AlfalfaGEDB | MS.gene065159

M. sativa cultivar XinJiangDaYe / MS.gene065159

KEGG: -
GO: -
PFAM: PF00226.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065159.t1	XP_003592629.1	93	401	1	1	16	416	41	414	2.20E-183	651.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065159.t1	Q9ZSY2	79.8	401	47	4	16	415	42	409	2.5e-159	563.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065159.t1	G7IC93	93.0	401	1	1	16	416	41	414	1.6e-183	651.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene065159	0.834946	2.23E-56	-1.69E-46
MS.gene049254	MS.gene065159	0.814308	1.65E-51	-1.69E-46
MS.gene049283	MS.gene065159	0.836468	9.19E-57	-1.69E-46
MS.gene049368	MS.gene065159	0.82715	1.83E-54	-1.69E-46
MS.gene049499	MS.gene065159	0.804113	2.52E-49	-1.69E-46
MS.gene04998	MS.gene065159	0.813911	2.01E-51	-1.69E-46
MS.gene049983	MS.gene065159	0.839965	1.16E-57	-1.69E-46
MS.gene050114	MS.gene065159	0.838661	2.52E-57	-1.69E-46
MS.gene050439	MS.gene065159	0.803005	4.29E-49	-1.69E-46
MS.gene050654	MS.gene065159	0.848256	6.88E-60	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065159.t1	MTR_1g110310	92.556	403	3	1	14	416	39	414	0.0	756
MS.gene065159.t1	MTR_5g035770	54.684	395	143	3	14	407	48	407	1.15e-155	446
MS.gene065159.t1	MTR_5g035770	54.707	393	142	3	16	407	11	368	1.20e-155	444
MS.gene065159.t1	MTR_5g035770	55.584	394	133	4	18	407	20	375	1.55e-155	444

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065159.t1	AT1G68370	78.465	404	51	5	14	415	40	409	0.0	639
MS.gene065159.t1	AT1G24120	51.923	416	149	3	14	407	43	429	3.30e-151	436
MS.gene065159.t1	AT1G59980	47.891	403	172	4	14	414	46	412	2.78e-125	369
MS.gene065159.t1	AT1G59980	47.532	385	164	4	32	414	1	349	3.29e-117	346
MS.gene065159.t1	AT1G59980	50.915	328	134	1	15	342	47	347	3.09e-114	338

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Find 92 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCGATTTATCTAATCTT+GGG	0.433620	1.2:+81698739	MS.gene065159:CDS
AACCCGAGCCCTTAAGATTG+AGG	0.504980	1.2:-81701884	None:intergenic
AACCTCAATCTTAAGGGCTC+GGG	0.448187	1.2:+81701882	MS.gene065159:CDS
AACTGCACAAAGCAAATTCA+AGG	0.433774	1.2:+81699163	MS.gene065159:CDS
AATGAGCAGCAAGCTGAGTC+CGG	0.438090	1.2:+81699119	MS.gene065159:CDS
AATGGATTCAACTGTGAATG+CGG	0.640290	1.2:+81700485	MS.gene065159:CDS
ACACATATATTTGCCGTTTA+TGG	0.136662	1.2:+81700675	MS.gene065159:CDS
ACAGATGTTCCCATTGGAAG+GGG	0.585092	1.2:-81698956	None:intergenic
ACAGTCAGACCCCTTCCAAT+GGG	0.539807	1.2:+81698947	MS.gene065159:CDS
ACGGCAAATATATGTGTGCC+AGG	0.520233	1.2:-81700669	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGCATGAATTGAACGAA+AGG	-	chr1.2:81698437-81698456	None:intergenic	30.0%
AACAGACAACTAAAAAGGAA+TGG	+	chr1.2:81699563-81699582	MS.gene065159:intron	30.0%
AAGCAATGCAATAATCTTCT+TGG	+	chr1.2:81699014-81699033	MS.gene065159:intron	30.0%
AGTAGTTGTGCAATTACAAT+TGG	+	chr1.2:81700358-81700377	MS.gene065159:intron	30.0%
ATAGAAGTAAGATGTCAAGA+TGG	-	chr1.2:81698156-81698175	None:intergenic	30.0%
ATTAAAAGGAGAGTTGTATC+AGG	-	chr1.2:81698652-81698671	None:intergenic	30.0%
ATTAAATGTGTTCTGCTCTT+CGG	+	chr1.2:81701600-81701619	MS.gene065159:intron	30.0%
ATTTACCAAGTTATCTAGCT+TGG	+	chr1.2:81698069-81698088	MS.gene065159:intron	30.0%
CACAAGATTTGAAAGTTTGA+AGG	-	chr1.2:81700182-81700201	None:intergenic	30.0%
CTGATCTCTATATAATTGAC+AGG	+	chr1.2:81697808-81697827	MS.gene065159:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	81697512	81701926	81697512	ID=MS.gene065159
chr1.2	mRNA	81697512	81701926	81697512	ID=MS.gene065159.t1;Parent=MS.gene065159
chr1.2	exon	81697512	81697561	81697512	ID=MS.gene065159.t1.exon1;Parent=MS.gene065159.t1
chr1.2	CDS	81697512	81697561	81697512	ID=cds.MS.gene065159.t1;Parent=MS.gene065159.t1
chr1.2	exon	81697830	81697953	81697830	ID=MS.gene065159.t1.exon2;Parent=MS.gene065159.t1
chr1.2	CDS	81697830	81697953	81697830	ID=cds.MS.gene065159.t1;Parent=MS.gene065159.t1
chr1.2	exon	81698711	81698793	81698711	ID=MS.gene065159.t1.exon3;Parent=MS.gene065159.t1
chr1.2	CDS	81698711	81698793	81698711	ID=cds.MS.gene065159.t1;Parent=MS.gene065159.t1
chr1.2	exon	81698877	81698988	81698877	ID=MS.gene065159.t1.exon4;Parent=MS.gene065159.t1
chr1.2	CDS	81698877	81698988	81698877	ID=cds.MS.gene065159.t1;Parent=MS.gene065159.t1
chr1.2	exon	81699080	81699184	81699080	ID=MS.gene065159.t1.exon5;Parent=MS.gene065159.t1
chr1.2	CDS	81699080	81699184	81699080	ID=cds.MS.gene065159.t1;Parent=MS.gene065159.t1
chr1.2	exon	81699261	81699311	81699261	ID=MS.gene065159.t1.exon6;Parent=MS.gene065159.t1
chr1.2	CDS	81699261	81699311	81699261	ID=cds.MS.gene065159.t1;Parent=MS.gene065159.t1
chr1.2	exon	81700417	81700696	81700417	ID=MS.gene065159.t1.exon7;Parent=MS.gene065159.t1
chr1.2	CDS	81700417	81700696	81700417	ID=cds.MS.gene065159.t1;Parent=MS.gene065159.t1
chr1.2	exon	81700792	81700940	81700792	ID=MS.gene065159.t1.exon8;Parent=MS.gene065159.t1
chr1.2	CDS	81700792	81700940	81700792	ID=cds.MS.gene065159.t1;Parent=MS.gene065159.t1
chr1.2	exon	81701021	81701074	81701021	ID=MS.gene065159.t1.exon9;Parent=MS.gene065159.t1
chr1.2	CDS	81701021	81701074	81701021	ID=cds.MS.gene065159.t1;Parent=MS.gene065159.t1
chr1.2	exon	81701684	81701926	81701684	ID=MS.gene065159.t1.exon10;Parent=MS.gene065159.t1
chr1.2	CDS	81701684	81701926	81701684	ID=cds.MS.gene065159.t1;Parent=MS.gene065159.t1

Gene Sequence

>MS.gene065159

ATGAGTTTAAGAAAGCCCTTCAATTTGAATGGTTATGACTTTTGCTTGGGGTATTGAAGCAATTTTGCAATTCAAATACTATAGATTAGTGTTTGGGCTTTTCTCTCAATTTGTCTCACTCCTGCTATCAGTTTTCACCCTCTGATTAGTCATAGCTAGTTGTGAGTTTTATGTATATAGTATAAATTGTTTAAACTCTGTAGGAATTTTGAAATAGCAGCCATCCCCCTATCCGCTATCTCACTATAGCTTTTCTAGGGCCGGACACTATGCTCTGCTATCCACAATTGATAACACTGATCTCTATATAATTGACAGGTATCACCCTGACAAGAATGCCAACAATCCTGAAGCTTCAGAACTATTCAAAGAGGTTGCATATTCTTATAATATCTTATCTGACCCAGAAAAGAGAAGGCAGTACGACAGTGCAGGATTTGAGGTTACTTTCTTCCTCTTCTTTCCATGTGAATCCAAAGCTCTTCTTTTCTTCGATTTATCTCTCCCTCCCTTTTTGGCAGCATGAAAACAAAAGTTTTGGCTAATGGCATAGGAAAATTTACCAAGTTATCTAGCTTGGAAAACAGATAAAAAATGCATTGCTCAACTACTATAATTTTTTCCCTTTTCTGGGGAGCTTGCCATCTTGACATCTTACTTCTATGATGGTCTGTAATTGAACCTGCAAGCTTTTCTTATGCTTTCAACATATACATCTCAGAAGAGAGGAGCTAATGCATTCATATTGCCTCCCTGCAACTTGGAATTTGAGTGAATGACATATCTCCACGTCAAATATTATATTTTAGTCAAAATTGGAGTTTATATATTAGCTGTAAAACATGAGTCATTTGTTTCGGACTAGACCTTATACATATGTACTGTTTTTGTTATTCCTGCCTATCTTTTCATAGATTACTATCCTTTCGTTCAATTCATGCATTTATCTTTACTATTATGTCATGTATATTCTTGAAAATTTAAGTTTCATTTGTACTCTGCTGCTTGCATTAATGTAAATAGTTTGCTTTTTATATATCGGACTCTGCTGCTTGCATTAATGTAAATGGTTTGTTTTTTTATATATCGGTAGTACTATATAGTCCTCGAAAGCTCTTTTGCGTTTCAGTTCATATTCCTGATACAACTCTCCTTTTAATTAATATGTAACTTTAAGCTATTTTGCCTATGTATATCAGGCACTTGATGCTGATAGCATGGACATGGAAATCGATTTATCTAATCTTGGGACTGTGAACACAATGTTTGCAGCTTTATTCAGGTGTGGGTTTTAGAGCATGAGTATGACTGCTTGTTTTCAAAATTATTTCGCTCTGCATTGTTTCTTACTTTATTTGGTAACAGCAAGCTGGGTGTCCCAATCAAGACTACCATTTCGGCTAATGTTCTTGAAGAAGCTTTGAATGGCACTGTTACAGTCAGACCCCTTCCAATGGGAACATCTGTCAGTGGAAAGGTTCGTACATTCTTCATGATGAATGAAGCAATGCAATAATCTTCTTGGTTTCTATTTGTTCTTATTCCACTTATATGGCAATTTGTTGCAGGTAGAGAAGCAATGTGCTCATTTTTTTGGTGTGACAATAAATGAGCAGCAAGCTGAGTCCGGGATTGTAGTAAGAGTTACTTCAACTGCACAAAGCAAATTCAAGGTATCACTGATGCCTTTTTTACAATGATTCCGGCTAATATGGCATCAGATTGTAATATTGAACGCTGGTTTTTCAGTTGCTCTATTTCGAACAAGATGCAAACGGGGGCTATGGTTTAGCATTGCAGGTAATATTTACTCCCTACGTTCCTTTTTAAGTGGTGCTTTTGTAGAAATTTTTGTCCCTTATTTGTTGTTGTCAAAGTTCAATGCAACAATAATTATTGTTTTGTCAATTATACCCTTAAGTATTTATTGCAGAGATAGAAATATGTGTAATGAGATAATATATTGTTAAGGGTATAATACGAAAAAGTAAACAATTTAATCAAAAGTAACAAAGTTTATTGGTTTTCTTGGAATGTGTGAATAATCATAAAACAGACAACTAAAAAGGAATGGAGGGAGTATTAACCTAGTGCTTCTTCTTTTACTCCCTCATCTCCCTTCGACTTGTTGATTTACCAAAATATATTGGTATTAAATTGAAATTGATACACTCACCATGAGTAGGTTGAGGTTGTAAGCAGTCCCAACCACCTGGGGCGAGAACATGGGACTCAGATATCACAGAAACTCTAATAGGAAAAAACACATCCTTCACGCTTCTGCAGTTGAATGATGATTAATCTCACAGGCAGATATCCCATGGTTTTACCTCTTCCAAAAATTGAAATGACTATTAACTTTATATTACTGGCGTTTTCTTCAAGCATGGTTGTGTCTCTAGAATGTTAGATCATCAAAGTGTTACCCATTAACTTATATCTCAAATTCTTCCCTCCCTCCACCCTCATCTCCATTTCCCTTTTACTTGTGTCTTGTAGCATAATATTAGTAAACACTAGGCATTAAATAACAATCCTTGCACGTGGTTGTATTTTTATTTCAACAAATGCAGAAGCATAACAGCACGAATTTCTATGGTGGCTGCTAACAAGCCTTTGGCCTTGTGTTTCCTGTTTTTATCATCTGGATAAAAACCAAAATCAATTCCTTCAAACTTTCAAATCTTGTGAAACACATTTTATCATCTGGATTTTGTAAAGTAATTTGCTGTTAGACTAACAAATCAGAAAAAGTGATAACACAAAATGCACTTTAAATTTAATTCTTCTTAAGCCATTCAAAATTGATTCATAGATCGCACAAATCACAACTAGTTTATTGAAGTAGTAGTTGTGCAATTACAATTGGAAGTTTATTTAGTTGTCTATGCAATTGTCTATACAGGAAGATAGTGAGAAGACTGGCAAAGTGACATCTGCTGGAATGTATTTCTTACATTTTCAAGTGTACAGAATGGATTCAACTGTGAATGCGGTATGGATATTATGTCTATTTGGTTTCTTTTCTTTGTTGCGGGCTGTTTGGAAAGTGGTCACTTTTAGTGTTGTGGTGCAGTTAGCGATGGCCAAGGATCCTGAGGGGGCTTTCTTTAAAAGGTTGGAAGGTCTTCAACCTTGTGAAGTTTCGGAACTAAAGCCTGGCACACATATATTTGCCGTTTATGGTCTGAATAATTTATTTTGTTTCATTGTTTTTTTTTTTGCTTGCTTGGGATGTTTTTTCATGTAAACTAATTCAATTCGAGTTGATATTGTTTAGGCGATAACTTCTTTAAGACTGCTAGCTATACAATTGAAGCAGTATGTGCAAAATCACATGAAGATACCACCCAAAAACTTCAGGATATTGAGGCTCAAATTTTAAGAAAGAGGAATGAGCTACGGCAATTCGAATCAGAATATAGAAAGGTTATTATTTTCTATAGTTGTTCATAGCTTGAAGTTTGTTTTGTGGTCCTTAATGTGATCCTTTTCTGAATACGTTTCAGGCATTGGCACGCTATCAGGAAGTGACAGACAGATACACAAAAGAAAAACAGTCTGTAAGTTCTTCCAACACATGCTACAGTTATAAATGCATGTCTTTTTTCTTTTTTTTTAAATAAATTACAAATGTAAACATTTGCATTTTTTTTTTAGTAGTAAATTCCCCACAGCATAGCTGATCATCAGTTGAAAAAACCCCATCTGCTCCATTAAGTTGTGGCAAGCTAGATCAGTTGCAGATTTTTCTCACCTGGCTTACTTGGCTTGCCGATAGTATGTTGCTATTGCAATCAATTATCAGAATTTAATAGAGGAAAAGGAAACAACTCAGCTGTTGTGCCATACGATGCTTATCCTTGTTTTGGTCTTTTATATGCATTATGAATGTTAAAATATATGATGCACAAAAAGTTAGAGAGAAAAACTATTCTCACACTATTTCCTGTTTTCGATATGTCCTGTTTTCACCATTTCTGCAGATTCTCACTGTTTTCAATTGTTATTGTAAACATATCAATTGAAAATGAATAGTTAAAAAAAAAAAAAAAAAACGTTTTGATATAATTTACCCTGGCACTACTATTAAATGTGTTCTGCTCTTCGGTGTTTTTACAATTACAAATACAATATGATGTAATTTGTCTGTTATTTTTCTGGTTACCCAGGTAGATGAGCTTCTGAAGCAAAGGGACGGTATCCATTCTACCTTCACCATTGTCAAGCCAACCAGTACTAGTGGAAGTGGCAGTAATTTAAGCAATGGAAGTTCTAGCAAAATTTCTGGTGAAGATTCCAAAGGTGAGAGCCCTGGGGAAGATGGAGGGTCAGATAGTAAGGATAAATCAGGCAAAAAGAAATGGTTCAACCTCAATCTTAAGGGCTCGGGTTCTGATAAGAAGTTGATTTAA

Protein sequence

>MS.gene065159.t1

MSLRKPFNLNGYDFCLGYHPDKNANNPEASELFKEVAYSYNILSDPEKRRQYDSAGFEALDADSMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPMGTSVSGKVEKQCAHFFGVTINEQQAESGIVVRVTSTAQSKFKLLYFEQDANGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTVNAVWILCLFGFFSLLRAVWKVVTFSVVVQLAMAKDPEGAFFKRLEGLQPCEVSELKPGTHIFAVYGDNFFKTASYTIEAVCAKSHEDTTQKLQDIEAQILRKRNELRQFESEYRKALARYQEVTDRYTKEKQSVDELLKQRDGIHSTFTIVKPTSTSGSGSNLSNGSSSKISGEDSKGESPGEDGGSDSKDKSGKKKWFNLNLKGSGSDKKLI