Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071408.t1 | XP_003602045.1 | 98.4 | 129 | 2 | 0 | 1 | 129 | 308 | 436 | 2.30E-62 | 248.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071408.t1 | Q42593 | 77.3 | 128 | 25 | 1 | 1 | 128 | 293 | 416 | 2.3e-47 | 189.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071408.t1 | G7J4Y2 | 98.4 | 129 | 2 | 0 | 1 | 129 | 308 | 436 | 1.7e-62 | 248.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene071408 | 0.824409 | 8.20E-54 | -1.69E-46 |
| MS.gene049150 | MS.gene071408 | 0.807667 | 4.52E-50 | -1.69E-46 |
| MS.gene049153 | MS.gene071408 | 0.813588 | 2.37E-51 | -1.69E-46 |
| MS.gene049260 | MS.gene071408 | 0.838927 | 2.15E-57 | -1.69E-46 |
| MS.gene049284 | MS.gene071408 | 0.823366 | 1.44E-53 | -1.69E-46 |
| MS.gene049346 | MS.gene071408 | 0.803449 | 3.47E-49 | -1.69E-46 |
| MS.gene049351 | MS.gene071408 | 0.824453 | 8.01E-54 | -1.69E-46 |
| MS.gene049389 | MS.gene071408 | 0.803982 | 2.69E-49 | -1.69E-46 |
| MS.gene049491 | MS.gene071408 | 0.825249 | 5.20E-54 | -1.69E-46 |
| MS.gene049599 | MS.gene071408 | -0.826763 | 2.27E-54 | -1.69E-46 |
| MS.gene049661 | MS.gene071408 | 0.802546 | 5.33E-49 | -1.69E-46 |
| MS.gene049662 | MS.gene071408 | 0.806569 | 7.72E-50 | -1.69E-46 |
| MS.gene049758 | MS.gene071408 | 0.903238 | 4.26E-79 | -1.69E-46 |
| MS.gene049910 | MS.gene071408 | 0.838638 | 2.55E-57 | -1.69E-46 |
| MS.gene050076 | MS.gene071408 | 0.850383 | 1.76E-60 | -1.69E-46 |
| MS.gene050099 | MS.gene071408 | 0.815395 | 9.45E-52 | -1.69E-46 |
| MS.gene050128 | MS.gene071408 | 0.831889 | 1.29E-55 | -1.69E-46 |
| MS.gene050301 | MS.gene071408 | 0.876326 | 1.53E-68 | -1.69E-46 |
| MS.gene050397 | MS.gene071408 | 0.876095 | 1.83E-68 | -1.69E-46 |
| MS.gene050426 | MS.gene071408 | -0.803696 | 3.08E-49 | -1.69E-46 |
| MS.gene050432 | MS.gene071408 | 0.839621 | 1.42E-57 | -1.69E-46 |
| MS.gene050464 | MS.gene071408 | 0.8845 | 1.82E-71 | -1.69E-46 |
| MS.gene050529 | MS.gene071408 | 0.882423 | 1.05E-70 | -1.69E-46 |
| MS.gene050558 | MS.gene071408 | 0.805707 | 1.17E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene071408 | -0.801154 | 1.03E-48 | -1.69E-46 |
| MS.gene050642 | MS.gene071408 | 0.830101 | 3.55E-55 | -1.69E-46 |
| MS.gene050670 | MS.gene071408 | 0.819852 | 9.34E-53 | -1.69E-46 |
| MS.gene05101 | MS.gene071408 | 0.85817 | 9.90E-63 | -1.69E-46 |
| MS.gene05119 | MS.gene071408 | -0.831114 | 2.00E-55 | -1.69E-46 |
| MS.gene051471 | MS.gene071408 | 0.858073 | 1.06E-62 | -1.69E-46 |
| MS.gene051582 | MS.gene071408 | 0.824629 | 7.28E-54 | -1.69E-46 |
| MS.gene051662 | MS.gene071408 | 0.838509 | 2.76E-57 | -1.69E-46 |
| MS.gene051663 | MS.gene071408 | 0.827448 | 1.56E-54 | -1.69E-46 |
| MS.gene051860 | MS.gene071408 | 0.868496 | 6.25E-66 | -1.69E-46 |
| MS.gene051877 | MS.gene071408 | 0.802932 | 4.44E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene071408 | 0.845493 | 3.92E-59 | -1.69E-46 |
| MS.gene052011 | MS.gene071408 | -0.810802 | 9.62E-51 | -1.69E-46 |
| MS.gene052077 | MS.gene071408 | 0.834047 | 3.76E-56 | -1.69E-46 |
| MS.gene052078 | MS.gene071408 | 0.866765 | 2.24E-65 | -1.69E-46 |
| MS.gene052178 | MS.gene071408 | 0.871562 | 6.22E-67 | -1.69E-46 |
| MS.gene052188 | MS.gene071408 | 0.84372 | 1.18E-58 | -1.69E-46 |
| MS.gene052207 | MS.gene071408 | 0.810216 | 1.29E-50 | -1.69E-46 |
| MS.gene052253 | MS.gene071408 | 0.819116 | 1.37E-52 | -1.69E-46 |
| MS.gene052309 | MS.gene071408 | -0.806245 | 9.03E-50 | -1.69E-46 |
| MS.gene052310 | MS.gene071408 | 0.842605 | 2.34E-58 | -1.69E-46 |
| MS.gene052326 | MS.gene071408 | 0.804871 | 1.75E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene071408 | 0.857589 | 1.47E-62 | -1.69E-46 |
| MS.gene053103 | MS.gene071408 | 0.803005 | 4.29E-49 | -1.69E-46 |
| MS.gene05316 | MS.gene071408 | 0.804511 | 2.09E-49 | -1.69E-46 |
| MS.gene053209 | MS.gene071408 | 0.868388 | 6.78E-66 | -1.69E-46 |
| MS.gene053557 | MS.gene071408 | 0.871209 | 8.13E-67 | -1.69E-46 |
| MS.gene053836 | MS.gene071408 | 0.892338 | 1.74E-74 | -1.69E-46 |
| MS.gene053907 | MS.gene071408 | 0.837402 | 5.31E-57 | -1.69E-46 |
| MS.gene053971 | MS.gene071408 | 0.806012 | 1.01E-49 | -1.69E-46 |
| MS.gene054123 | MS.gene071408 | 0.803061 | 4.17E-49 | -1.69E-46 |
| MS.gene054473 | MS.gene071408 | 0.835 | 2.16E-56 | -1.69E-46 |
| MS.gene054930 | MS.gene071408 | 0.810432 | 1.16E-50 | -1.69E-46 |
| MS.gene054983 | MS.gene071408 | 0.817956 | 2.52E-52 | -1.69E-46 |
| MS.gene055116 | MS.gene071408 | 0.835199 | 1.93E-56 | -1.69E-46 |
| MS.gene055277 | MS.gene071408 | 0.912333 | 2.20E-83 | -1.69E-46 |
| MS.gene055390 | MS.gene071408 | 0.865831 | 4.44E-65 | -1.69E-46 |
| MS.gene055422 | MS.gene071408 | 0.896801 | 2.60E-76 | -1.69E-46 |
| MS.gene055428 | MS.gene071408 | 0.876385 | 1.46E-68 | -1.69E-46 |
| MS.gene05553 | MS.gene071408 | 0.822717 | 2.04E-53 | -1.69E-46 |
| MS.gene055712 | MS.gene071408 | 0.836205 | 1.07E-56 | -1.69E-46 |
| MS.gene055859 | MS.gene071408 | 0.81084 | 9.43E-51 | -1.69E-46 |
| MS.gene056191 | MS.gene071408 | 0.81424 | 1.70E-51 | -1.69E-46 |
| MS.gene056314 | MS.gene071408 | 0.803032 | 4.23E-49 | -1.69E-46 |
| MS.gene056407 | MS.gene071408 | 0.846854 | 1.67E-59 | -1.69E-46 |
| MS.gene056410 | MS.gene071408 | 0.806841 | 6.76E-50 | -1.69E-46 |
| MS.gene056447 | MS.gene071408 | 0.815445 | 9.21E-52 | -1.69E-46 |
| MS.gene056609 | MS.gene071408 | 0.820619 | 6.23E-53 | -1.69E-46 |
| MS.gene056612 | MS.gene071408 | 0.878747 | 2.19E-69 | -1.69E-46 |
| MS.gene056659 | MS.gene071408 | 0.813953 | 1.97E-51 | -1.69E-46 |
| MS.gene056899 | MS.gene071408 | -0.835973 | 1.23E-56 | -1.69E-46 |
| MS.gene056979 | MS.gene071408 | 0.853052 | 3.08E-61 | -1.69E-46 |
| MS.gene05702 | MS.gene071408 | 0.850184 | 2.00E-60 | -1.69E-46 |
| MS.gene057121 | MS.gene071408 | 0.843567 | 1.29E-58 | -1.69E-46 |
| MS.gene057245 | MS.gene071408 | 0.844295 | 8.26E-59 | -1.69E-46 |
| MS.gene057439 | MS.gene071408 | 0.853418 | 2.42E-61 | -1.69E-46 |
| MS.gene057448 | MS.gene071408 | 0.840533 | 8.21E-58 | -1.69E-46 |
| MS.gene057449 | MS.gene071408 | 0.835949 | 1.25E-56 | -1.69E-46 |
| MS.gene057450 | MS.gene071408 | 0.848592 | 5.56E-60 | -1.69E-46 |
| MS.gene058002 | MS.gene071408 | 0.867377 | 1.43E-65 | -1.69E-46 |
| MS.gene058082 | MS.gene071408 | 0.831938 | 1.26E-55 | -1.69E-46 |
| MS.gene05811 | MS.gene071408 | 0.880465 | 5.37E-70 | -1.69E-46 |
| MS.gene058142 | MS.gene071408 | 0.829551 | 4.83E-55 | -1.69E-46 |
| MS.gene058233 | MS.gene071408 | 0.824844 | 6.48E-54 | -1.69E-46 |
| MS.gene058276 | MS.gene071408 | 0.821922 | 3.12E-53 | -1.69E-46 |
| MS.gene058293 | MS.gene071408 | 0.835113 | 2.03E-56 | -1.69E-46 |
| MS.gene058660 | MS.gene071408 | 0.864171 | 1.47E-64 | -1.69E-46 |
| MS.gene058710 | MS.gene071408 | 0.802351 | 5.85E-49 | -1.69E-46 |
| MS.gene058749 | MS.gene071408 | 0.80041 | 1.46E-48 | -1.69E-46 |
| MS.gene058787 | MS.gene071408 | 0.80848 | 3.03E-50 | -1.69E-46 |
| MS.gene058845 | MS.gene071408 | 0.856654 | 2.78E-62 | -1.69E-46 |
| MS.gene05886 | MS.gene071408 | 0.818983 | 1.47E-52 | -1.69E-46 |
| MS.gene058928 | MS.gene071408 | 0.82517 | 5.42E-54 | -1.69E-46 |
| MS.gene05907 | MS.gene071408 | 0.867287 | 1.53E-65 | -1.69E-46 |
| MS.gene059285 | MS.gene071408 | 0.830521 | 2.80E-55 | -1.69E-46 |
| MS.gene059294 | MS.gene071408 | 0.813051 | 3.11E-51 | -1.69E-46 |
| MS.gene059326 | MS.gene071408 | 0.83181 | 1.35E-55 | -1.69E-46 |
| MS.gene059342 | MS.gene071408 | 0.802273 | 6.07E-49 | -1.69E-46 |
| MS.gene059366 | MS.gene071408 | 0.803045 | 4.20E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene071408 | 0.816747 | 4.72E-52 | -1.69E-46 |
| MS.gene059518 | MS.gene071408 | 0.864419 | 1.23E-64 | -1.69E-46 |
| MS.gene059597 | MS.gene071408 | 0.86082 | 1.58E-63 | -1.69E-46 |
| MS.gene05959 | MS.gene071408 | 0.847616 | 1.03E-59 | -1.69E-46 |
| MS.gene059676 | MS.gene071408 | 0.854981 | 8.57E-62 | -1.69E-46 |
| MS.gene059688 | MS.gene071408 | 0.844346 | 8.00E-59 | -1.69E-46 |
| MS.gene059692 | MS.gene071408 | 0.844683 | 6.50E-59 | -1.69E-46 |
| MS.gene059695 | MS.gene071408 | 0.83609 | 1.15E-56 | -1.69E-46 |
| MS.gene059708 | MS.gene071408 | 0.821211 | 4.56E-53 | -1.69E-46 |
| MS.gene05984 | MS.gene071408 | 0.884427 | 1.94E-71 | -1.69E-46 |
| MS.gene059894 | MS.gene071408 | 0.904239 | 1.51E-79 | -1.69E-46 |
| MS.gene059899 | MS.gene071408 | 0.840737 | 7.26E-58 | -1.69E-46 |
| MS.gene06037 | MS.gene071408 | 0.841994 | 3.39E-58 | -1.69E-46 |
| MS.gene060407 | MS.gene071408 | 0.806559 | 7.76E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene071408 | 0.895325 | 1.07E-75 | -1.69E-46 |
| MS.gene061051 | MS.gene071408 | -0.862598 | 4.52E-64 | -1.69E-46 |
| MS.gene061112 | MS.gene071408 | 0.819433 | 1.16E-52 | -1.69E-46 |
| MS.gene061154 | MS.gene071408 | 0.816577 | 5.15E-52 | -1.69E-46 |
| MS.gene061159 | MS.gene071408 | 0.835999 | 1.21E-56 | -1.69E-46 |
| MS.gene061265 | MS.gene071408 | 0.819572 | 1.08E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071408.t1 | MTR_3g088160 | 98.450 | 129 | 2 | 0 | 1 | 129 | 308 | 436 | 3.08e-86 | 258 |
| MS.gene071408.t1 | MTR_3g088160 | 96.250 | 80 | 3 | 0 | 1 | 80 | 308 | 387 | 1.30e-48 | 160 |
| MS.gene071408.t1 | MTR_5g022510 | 61.538 | 52 | 18 | 1 | 3 | 54 | 173 | 222 | 4.27e-14 | 67.0 |
| MS.gene071408.t1 | MTR_5g022510 | 61.538 | 52 | 18 | 1 | 3 | 54 | 198 | 247 | 6.44e-14 | 66.6 |
| MS.gene071408.t1 | MTR_4g073410 | 62.745 | 51 | 17 | 1 | 4 | 54 | 200 | 248 | 1.03e-13 | 66.2 |
| MS.gene071408.t1 | MTR_4g061140 | 63.830 | 47 | 17 | 0 | 2 | 48 | 166 | 212 | 7.20e-13 | 63.2 |
| MS.gene071408.t1 | MTR_4g061140 | 63.830 | 47 | 17 | 0 | 2 | 48 | 200 | 246 | 8.93e-13 | 63.2 |
| MS.gene071408.t1 | MTR_4g061140 | 63.830 | 47 | 17 | 0 | 2 | 48 | 200 | 246 | 9.19e-13 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071408.t1 | AT1G77490 | 77.344 | 128 | 25 | 1 | 1 | 128 | 293 | 416 | 2.07e-62 | 196 |
| MS.gene071408.t1 | AT1G77490 | 77.344 | 128 | 25 | 1 | 1 | 128 | 293 | 416 | 2.16e-62 | 196 |
| MS.gene071408.t1 | AT4G08390 | 84.746 | 59 | 9 | 0 | 1 | 59 | 314 | 372 | 3.02e-27 | 103 |
| MS.gene071408.t1 | AT4G08390 | 84.746 | 59 | 9 | 0 | 1 | 59 | 314 | 372 | 3.02e-27 | 103 |
| MS.gene071408.t1 | AT4G08390 | 84.746 | 59 | 9 | 0 | 1 | 59 | 314 | 372 | 3.02e-27 | 103 |
| MS.gene071408.t1 | AT4G08390 | 84.746 | 59 | 9 | 0 | 1 | 59 | 313 | 371 | 3.59e-27 | 103 |
| MS.gene071408.t1 | AT4G08390 | 80.435 | 46 | 9 | 0 | 14 | 59 | 301 | 346 | 1.34e-17 | 77.4 |
| MS.gene071408.t1 | AT3G09640 | 65.957 | 47 | 16 | 0 | 2 | 48 | 200 | 246 | 2.06e-13 | 65.1 |
| MS.gene071408.t1 | AT3G09640 | 65.957 | 47 | 16 | 0 | 2 | 48 | 200 | 246 | 2.06e-13 | 65.1 |
| MS.gene071408.t1 | AT4G35000 | 57.692 | 52 | 20 | 1 | 2 | 53 | 197 | 246 | 3.68e-12 | 62.0 |
| MS.gene071408.t1 | AT1G07890 | 63.830 | 47 | 17 | 0 | 2 | 48 | 200 | 246 | 5.01e-12 | 61.2 |
| MS.gene071408.t1 | AT1G07890 | 63.830 | 47 | 17 | 0 | 2 | 48 | 200 | 246 | 5.21e-12 | 61.2 |
| MS.gene071408.t1 | AT1G07890 | 63.830 | 47 | 17 | 0 | 2 | 48 | 200 | 246 | 5.21e-12 | 61.2 |
| MS.gene071408.t1 | AT1G07890 | 63.830 | 47 | 17 | 0 | 2 | 48 | 200 | 246 | 5.21e-12 | 61.2 |
| MS.gene071408.t1 | AT1G07890 | 63.830 | 47 | 17 | 0 | 2 | 48 | 200 | 246 | 5.21e-12 | 61.2 |
| MS.gene071408.t1 | AT1G07890 | 63.830 | 47 | 17 | 0 | 2 | 48 | 200 | 246 | 5.21e-12 | 61.2 |
| MS.gene071408.t1 | AT1G07890 | 63.830 | 47 | 17 | 0 | 2 | 48 | 200 | 246 | 5.21e-12 | 61.2 |
| MS.gene071408.t1 | AT1G07890 | 63.830 | 47 | 17 | 0 | 2 | 48 | 200 | 246 | 5.21e-12 | 61.2 |
Find 26 sgRNAs with CRISPR-Local
Find 53 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCCAAGGTTGCTGAGTT+TGG | 0.256056 | 3.3:-73453379 | None:intergenic |
| CATAATTGTTATTGCTGCTT+TGG | 0.283340 | 3.3:+73454104 | MS.gene071408:CDS |
| TTTGACTTTAGAGCCTTATC+TGG | 0.287367 | 3.3:-73454066 | None:intergenic |
| CAATAACAATTATGATGTTT+AGG | 0.296597 | 3.3:-73454095 | None:intergenic |
| AACTTCTCTCCCACTACATT+TGG | 0.336185 | 3.3:-73453648 | None:intergenic |
| TTTCAGGGCATTGTAATAGA+TGG | 0.363698 | 3.3:+73453621 | MS.gene071408:intron |
| AACCTTTCCAGAGGAGTACT+TGG | 0.382167 | 3.3:-73453679 | None:intergenic |
| CAGGTTCAAACTTTGCTCCA+AGG | 0.468266 | 3.3:-73453392 | None:intergenic |
| CATGCCAAACTCAGCAACCT+TGG | 0.474570 | 3.3:+73453375 | MS.gene071408:CDS |
| ATGCTATGAGGAAGAAGATA+CGG | 0.479276 | 3.3:+73454016 | MS.gene071408:CDS |
| CAACGTGAACAGACCTCTGC+AGG | 0.481098 | 3.3:-73453411 | None:intergenic |
| TTGACTTTAGAGCCTTATCT+GGG | 0.486207 | 3.3:-73454065 | None:intergenic |
| TGAGAAATATGCTGTAGATC+AGG | 0.501966 | 3.3:+73453323 | MS.gene071408:CDS |
| GAAGATACGGGCTGAATATG+AGG | 0.502305 | 3.3:+73454029 | MS.gene071408:CDS |
| GCTGAATATGAGGCGGTTGG+CGG | 0.508251 | 3.3:+73454039 | MS.gene071408:CDS |
| GTAGCAGCCAAGTACTCCTC+TGG | 0.510718 | 3.3:+73453672 | MS.gene071408:CDS |
| GGTTGGCGGAAGCCCAGATA+AGG | 0.547496 | 3.3:+73454053 | MS.gene071408:CDS |
| TGCTATGAGGAAGAAGATAC+GGG | 0.568469 | 3.3:+73454017 | MS.gene071408:CDS |
| AAGAGCTGTCTGATGCTATG+AGG | 0.570930 | 3.3:+73454004 | MS.gene071408:CDS |
| AGATGGTTCTCCAAATGTAG+TGG | 0.571290 | 3.3:+73453638 | MS.gene071408:CDS |
| CGGGCTGAATATGAGGCGGT+TGG | 0.594896 | 3.3:+73454036 | MS.gene071408:CDS |
| AGCAAAGTTTGAACCTGCAG+AGG | 0.602470 | 3.3:+73453398 | MS.gene071408:CDS |
| GATGGTTCTCCAAATGTAGT+GGG | 0.610180 | 3.3:+73453639 | MS.gene071408:CDS |
| AGCCAAGTACTCCTCTGGAA+AGG | 0.627771 | 3.3:+73453677 | MS.gene071408:CDS |
| CAAGCTTAAAACCTTTCCAG+AGG | 0.659132 | 3.3:-73453688 | None:intergenic |
| GATACGGGCTGAATATGAGG+CGG | 0.710767 | 3.3:+73454032 | MS.gene071408:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAAGAAAACTTTAAT+AGG | - | chr3.3:73453596-73453615 | None:intergenic | 10.0% |
| !!! | AATTTTATGTTGAATAAATA+TGG | - | chr3.3:73453254-73453273 | None:intergenic | 10.0% |
| !!! | ATATTTCACAAATAATTTTA+TGG | - | chr3.3:73453291-73453310 | None:intergenic | 10.0% |
| !!! | TATTTCACAAATAATTTTAT+GGG | - | chr3.3:73453290-73453309 | None:intergenic | 10.0% |
| !!! | ATTATTATCACATGTAATTT+TGG | + | chr3.3:73453922-73453941 | MS.gene071408:intron | 15.0% |
| !! | AAATCTTAAATGAAGAAGAA+AGG | + | chr3.3:73453945-73453964 | MS.gene071408:intron | 20.0% |
| !! | AAATTATTTGTGAAATATGC+AGG | + | chr3.3:73453293-73453312 | MS.gene071408:intron | 20.0% |
| !! | CAATAACAATTATGATGTTT+AGG | - | chr3.3:73454098-73454117 | None:intergenic | 20.0% |
| !!! | TCTTTTTTATCTGTTTTTCA+GGG | + | chr3.3:73453606-73453625 | MS.gene071408:intron | 20.0% |
| !!! | TTCTTTTTTATCTGTTTTTC+AGG | + | chr3.3:73453605-73453624 | MS.gene071408:intron | 20.0% |
| ! | ATGTTGAATAAATATGGACA+TGG | - | chr3.3:73453248-73453267 | None:intergenic | 25.0% |
| ! | GAAAACTTTAATAGGTGATT+TGG | - | chr3.3:73453588-73453607 | None:intergenic | 25.0% |
| ! | TGTTGAATAAATATGGACAT+GGG | - | chr3.3:73453247-73453266 | None:intergenic | 25.0% |
| !!! | TGTTTTGTGCATTTTTAGAT+GGG | + | chr3.3:73453440-73453459 | MS.gene071408:intron | 25.0% |
| ATGCAGACATGAAAAAGAAA+AGG | - | chr3.3:73453524-73453543 | None:intergenic | 30.0% | |
| ! | ATTCAGCAATTTTACCTTGA+AGG | - | chr3.3:73453219-73453238 | None:intergenic | 30.0% |
| ! | CATAATTGTTATTGCTGCTT+TGG | + | chr3.3:73454104-73454123 | MS.gene071408:CDS | 30.0% |
| ! | TTCATTTTCTTGATGCTTGT+TGG | + | chr3.3:73453733-73453752 | MS.gene071408:intron | 30.0% |
| !! | AAGAAGCTATTTTCAAATCG+TGG | + | chr3.3:73453898-73453917 | MS.gene071408:intron | 30.0% |
| !! | AGAAGCTATTTTCAAATCGT+GGG | + | chr3.3:73453899-73453918 | MS.gene071408:intron | 30.0% |
| !! | CTGTTTTGTGCATTTTTAGA+TGG | + | chr3.3:73453439-73453458 | MS.gene071408:intron | 30.0% |
| !!! | GCTATTTTGACATATCTGTT+TGG | + | chr3.3:73454126-73454145 | MS.gene071408:CDS | 30.0% |
| ATGCTATGAGGAAGAAGATA+CGG | + | chr3.3:73454016-73454035 | MS.gene071408:CDS | 35.0% | |
| TGAGAAATATGCTGTAGATC+AGG | + | chr3.3:73453323-73453342 | MS.gene071408:CDS | 35.0% | |
| ! | AGCAATTTTACCTTGAAGGA+AGG | - | chr3.3:73453215-73453234 | None:intergenic | 35.0% |
| ! | GTTCATTGTTTCTCTATTCC+TGG | + | chr3.3:73453813-73453832 | MS.gene071408:intron | 35.0% |
| !! | TTGACTTTAGAGCCTTATCT+GGG | - | chr3.3:73454068-73454087 | None:intergenic | 35.0% |
| !! | TTTCAGGGCATTGTAATAGA+TGG | + | chr3.3:73453621-73453640 | MS.gene071408:intron | 35.0% |
| !! | TTTGACTTTAGAGCCTTATC+TGG | - | chr3.3:73454069-73454088 | None:intergenic | 35.0% |
| AACTTCTCTCCCACTACATT+TGG | - | chr3.3:73453651-73453670 | None:intergenic | 40.0% | |
| AGATGGTTCTCCAAATGTAG+TGG | + | chr3.3:73453638-73453657 | MS.gene071408:CDS | 40.0% | |
| CAAGCTTAAAACCTTTCCAG+AGG | - | chr3.3:73453691-73453710 | None:intergenic | 40.0% | |
| GATGGTTCTCCAAATGTAGT+GGG | + | chr3.3:73453639-73453658 | MS.gene071408:CDS | 40.0% | |
| TCAAAAAGAGCAGCATCAGT+TGG | - | chr3.3:73453188-73453207 | None:intergenic | 40.0% | |
| TGCTATGAGGAAGAAGATAC+GGG | + | chr3.3:73454017-73454036 | MS.gene071408:CDS | 40.0% | |
| ! | TTTTACTCCTGCATCAAACC+AGG | - | chr3.3:73453834-73453853 | None:intergenic | 40.0% |
| ! | TTTTGACGATCCTTCCTTCA+AGG | + | chr3.3:73453202-73453221 | MS.gene071408:CDS | 40.0% |
| AAGAGCTGTCTGATGCTATG+AGG | + | chr3.3:73454004-73454023 | MS.gene071408:CDS | 45.0% | |
| AGCAAAGTTTGAACCTGCAG+AGG | + | chr3.3:73453398-73453417 | MS.gene071408:CDS | 45.0% | |
| CAGGTTCAAACTTTGCTCCA+AGG | - | chr3.3:73453395-73453414 | None:intergenic | 45.0% | |
| ! | CTCTATTCCTGGTTTGATGC+AGG | + | chr3.3:73453824-73453843 | MS.gene071408:intron | 45.0% |
| ! | GAAGATACGGGCTGAATATG+AGG | + | chr3.3:73454029-73454048 | MS.gene071408:CDS | 45.0% |
| !! | AACCTTTCCAGAGGAGTACT+TGG | - | chr3.3:73453682-73453701 | None:intergenic | 45.0% |
| !! | ATTATATATAATTTAATGAA+AGG | + | chr3.3:73453762-73453781 | MS.gene071408:intron | 5.0% |
| CATGCCAAACTCAGCAACCT+TGG | + | chr3.3:73453375-73453394 | MS.gene071408:CDS | 50.0% | |
| TGCTCCAAGGTTGCTGAGTT+TGG | - | chr3.3:73453382-73453401 | None:intergenic | 50.0% | |
| ! | AGCCAAGTACTCCTCTGGAA+AGG | + | chr3.3:73453677-73453696 | MS.gene071408:CDS | 50.0% |
| ! | GATACGGGCTGAATATGAGG+CGG | + | chr3.3:73454032-73454051 | MS.gene071408:CDS | 50.0% |
| CAACGTGAACAGACCTCTGC+AGG | - | chr3.3:73453414-73453433 | None:intergenic | 55.0% | |
| GCTGAATATGAGGCGGTTGG+CGG | + | chr3.3:73454039-73454058 | MS.gene071408:CDS | 55.0% | |
| GTAGCAGCCAAGTACTCCTC+TGG | + | chr3.3:73453672-73453691 | MS.gene071408:CDS | 55.0% | |
| CGGGCTGAATATGAGGCGGT+TGG | + | chr3.3:73454036-73454055 | MS.gene071408:CDS | 60.0% | |
| GGTTGGCGGAAGCCCAGATA+AGG | + | chr3.3:73454053-73454072 | MS.gene071408:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 73453164 | 73454155 | 73453164 | ID=MS.gene071408 |
| chr3.3 | mRNA | 73453164 | 73454155 | 73453164 | ID=MS.gene071408.t1;Parent=MS.gene071408 |
| chr3.3 | exon | 73453164 | 73453223 | 73453164 | ID=MS.gene071408.t1.exon1;Parent=MS.gene071408.t1 |
| chr3.3 | CDS | 73453164 | 73453223 | 73453164 | ID=cds.MS.gene071408.t1;Parent=MS.gene071408.t1 |
| chr3.3 | exon | 73453315 | 73453419 | 73453315 | ID=MS.gene071408.t1.exon2;Parent=MS.gene071408.t1 |
| chr3.3 | CDS | 73453315 | 73453419 | 73453315 | ID=cds.MS.gene071408.t1;Parent=MS.gene071408.t1 |
| chr3.3 | exon | 73453627 | 73453698 | 73453627 | ID=MS.gene071408.t1.exon3;Parent=MS.gene071408.t1 |
| chr3.3 | CDS | 73453627 | 73453698 | 73453627 | ID=cds.MS.gene071408.t1;Parent=MS.gene071408.t1 |
| chr3.3 | exon | 73454003 | 73454155 | 73454003 | ID=MS.gene071408.t1.exon4;Parent=MS.gene071408.t1 |
| chr3.3 | CDS | 73454003 | 73454155 | 73454003 | ID=cds.MS.gene071408.t1;Parent=MS.gene071408.t1 |
| Gene Sequence |
| Protein sequence |
