Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07315.t1 | KEH43195.1 | 75.4 | 199 | 25 | 3 | 1 | 182 | 1 | 192 | 2.40E-73 | 285 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07315.t1 | C7AU21 | 24.8 | 145 | 89 | 3 | 54 | 182 | 80 | 220 | 1.1e-07 | 58.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07315.t1 | A0A072VYP0 | 75.4 | 199 | 25 | 3 | 1 | 182 | 1 | 192 | 1.7e-73 | 285.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene07315 | 0.805465 | 1.32E-49 | -1.69E-46 |
| MS.gene049170 | MS.gene07315 | 0.820704 | 5.96E-53 | -1.69E-46 |
| MS.gene049346 | MS.gene07315 | 0.820789 | 5.70E-53 | -1.69E-46 |
| MS.gene049351 | MS.gene07315 | 0.822642 | 2.12E-53 | -1.69E-46 |
| MS.gene049356 | MS.gene07315 | 0.827762 | 1.31E-54 | -1.69E-46 |
| MS.gene049661 | MS.gene07315 | 0.817963 | 2.51E-52 | -1.69E-46 |
| MS.gene049662 | MS.gene07315 | 0.814487 | 1.50E-51 | -1.69E-46 |
| MS.gene049758 | MS.gene07315 | 0.829445 | 5.13E-55 | -1.69E-46 |
| MS.gene049910 | MS.gene07315 | 0.809379 | 1.95E-50 | -1.69E-46 |
| MS.gene050128 | MS.gene07315 | 0.815919 | 7.22E-52 | -1.69E-46 |
| MS.gene050301 | MS.gene07315 | 0.88499 | 1.20E-71 | -1.69E-46 |
| MS.gene050397 | MS.gene07315 | 0.806922 | 6.50E-50 | -1.69E-46 |
| MS.gene050406 | MS.gene07315 | 0.806065 | 9.86E-50 | -1.69E-46 |
| MS.gene050426 | MS.gene07315 | -0.800543 | 1.37E-48 | -1.69E-46 |
| MS.gene050432 | MS.gene07315 | 0.805207 | 1.49E-49 | -1.69E-46 |
| MS.gene050529 | MS.gene07315 | 0.820759 | 5.79E-53 | -1.69E-46 |
| MS.gene050670 | MS.gene07315 | 0.897388 | 1.48E-76 | -1.69E-46 |
| MS.gene050812 | MS.gene07315 | 0.844014 | 9.82E-59 | -1.69E-46 |
| MS.gene05101 | MS.gene07315 | 0.807102 | 5.96E-50 | -1.69E-46 |
| MS.gene05105 | MS.gene07315 | 0.864906 | 8.68E-65 | -1.69E-46 |
| MS.gene051360 | MS.gene07315 | 0.816002 | 6.92E-52 | -1.69E-46 |
| MS.gene051471 | MS.gene07315 | 0.808996 | 2.35E-50 | -1.69E-46 |
| MS.gene051525 | MS.gene07315 | 0.834698 | 2.58E-56 | -1.69E-46 |
| MS.gene051582 | MS.gene07315 | 0.861123 | 1.28E-63 | -1.69E-46 |
| MS.gene051860 | MS.gene07315 | 0.803967 | 2.71E-49 | -1.69E-46 |
| MS.gene052011 | MS.gene07315 | -0.844747 | 6.24E-59 | -1.69E-46 |
| MS.gene052077 | MS.gene07315 | 0.823351 | 1.45E-53 | -1.69E-46 |
| MS.gene052078 | MS.gene07315 | 0.820358 | 7.15E-53 | -1.69E-46 |
| MS.gene052188 | MS.gene07315 | 0.925114 | 2.84E-90 | -1.69E-46 |
| MS.gene052253 | MS.gene07315 | 0.88059 | 4.84E-70 | -1.69E-46 |
| MS.gene052310 | MS.gene07315 | 0.859944 | 2.91E-63 | -1.69E-46 |
| MS.gene052322 | MS.gene07315 | 0.804277 | 2.33E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene07315 | 0.88281 | 7.62E-71 | -1.69E-46 |
| MS.gene052414 | MS.gene07315 | 0.804597 | 2.00E-49 | -1.69E-46 |
| MS.gene052421 | MS.gene07315 | 0.824388 | 8.30E-54 | -1.69E-46 |
| MS.gene052481 | MS.gene07315 | 0.809678 | 1.68E-50 | -1.69E-46 |
| MS.gene052484 | MS.gene07315 | 0.801448 | 8.96E-49 | -1.69E-46 |
| MS.gene052485 | MS.gene07315 | 0.854131 | 1.51E-61 | -1.69E-46 |
| MS.gene053209 | MS.gene07315 | 0.858331 | 8.87E-63 | -1.69E-46 |
| MS.gene053557 | MS.gene07315 | 0.822732 | 2.02E-53 | -1.69E-46 |
| MS.gene053758 | MS.gene07315 | 0.813366 | 2.65E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene07315 | 0.857019 | 2.17E-62 | -1.69E-46 |
| MS.gene053907 | MS.gene07315 | 0.809521 | 1.82E-50 | -1.69E-46 |
| MS.gene053928 | MS.gene07315 | 0.854712 | 1.03E-61 | -1.69E-46 |
| MS.gene054011 | MS.gene07315 | 0.800807 | 1.21E-48 | -1.69E-46 |
| MS.gene054123 | MS.gene07315 | 0.873271 | 1.67E-67 | -1.69E-46 |
| MS.gene054183 | MS.gene07315 | 0.830686 | 2.55E-55 | -1.69E-46 |
| MS.gene054349 | MS.gene07315 | 0.849241 | 3.67E-60 | -1.69E-46 |
| MS.gene054556 | MS.gene07315 | 0.831242 | 1.87E-55 | -1.69E-46 |
| MS.gene054719 | MS.gene07315 | 0.804959 | 1.68E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene07315 | 0.837061 | 6.49E-57 | -1.69E-46 |
| MS.gene054983 | MS.gene07315 | 0.803686 | 3.10E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene07315 | 0.87141 | 6.98E-67 | -1.69E-46 |
| MS.gene055277 | MS.gene07315 | 0.823092 | 1.67E-53 | -1.69E-46 |
| MS.gene055369 | MS.gene07315 | 0.827668 | 1.38E-54 | -1.69E-46 |
| MS.gene055390 | MS.gene07315 | 0.81772 | 2.85E-52 | -1.69E-46 |
| MS.gene055412 | MS.gene07315 | 0.81505 | 1.13E-51 | -1.69E-46 |
| MS.gene055422 | MS.gene07315 | 0.844553 | 7.04E-59 | -1.69E-46 |
| MS.gene055428 | MS.gene07315 | 0.818468 | 1.93E-52 | -1.69E-46 |
| MS.gene055539 | MS.gene07315 | 0.837208 | 5.95E-57 | -1.69E-46 |
| MS.gene05553 | MS.gene07315 | 0.867174 | 1.66E-65 | -1.69E-46 |
| MS.gene055604 | MS.gene07315 | 0.844626 | 6.73E-59 | -1.69E-46 |
| MS.gene055744 | MS.gene07315 | 0.810734 | 9.95E-51 | -1.69E-46 |
| MS.gene05602 | MS.gene07315 | 0.820233 | 7.64E-53 | -1.69E-46 |
| MS.gene056191 | MS.gene07315 | 0.819633 | 1.05E-52 | -1.69E-46 |
| MS.gene056407 | MS.gene07315 | 0.861071 | 1.33E-63 | -1.69E-46 |
| MS.gene056410 | MS.gene07315 | 0.803337 | 3.66E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene07315 | 0.80434 | 2.26E-49 | -1.69E-46 |
| MS.gene056609 | MS.gene07315 | 0.825866 | 3.71E-54 | -1.69E-46 |
| MS.gene056612 | MS.gene07315 | 0.830069 | 3.61E-55 | -1.69E-46 |
| MS.gene056659 | MS.gene07315 | 0.898152 | 7.02E-77 | -1.69E-46 |
| MS.gene056719 | MS.gene07315 | 0.834386 | 3.09E-56 | -1.69E-46 |
| MS.gene056723 | MS.gene07315 | 0.868536 | 6.07E-66 | -1.69E-46 |
| MS.gene056796 | MS.gene07315 | 0.802757 | 4.82E-49 | -1.69E-46 |
| MS.gene05702 | MS.gene07315 | 0.840576 | 8.00E-58 | -1.69E-46 |
| MS.gene057121 | MS.gene07315 | 0.835057 | 2.09E-56 | -1.69E-46 |
| MS.gene057124 | MS.gene07315 | 0.877197 | 7.62E-69 | -1.69E-46 |
| MS.gene057207 | MS.gene07315 | 0.820533 | 6.52E-53 | -1.69E-46 |
| MS.gene057396 | MS.gene07315 | 0.829946 | 3.87E-55 | -1.69E-46 |
| MS.gene057448 | MS.gene07315 | 0.851449 | 8.81E-61 | -1.69E-46 |
| MS.gene057449 | MS.gene07315 | 0.830198 | 3.36E-55 | -1.69E-46 |
| MS.gene057450 | MS.gene07315 | 0.851291 | 9.77E-61 | -1.69E-46 |
| MS.gene057469 | MS.gene07315 | 0.801043 | 1.08E-48 | -1.69E-46 |
| MS.gene057749 | MS.gene07315 | 0.848697 | 5.20E-60 | -1.69E-46 |
| MS.gene057796 | MS.gene07315 | 0.80173 | 7.85E-49 | -1.69E-46 |
| MS.gene057823 | MS.gene07315 | 0.840766 | 7.14E-58 | -1.69E-46 |
| MS.gene057825 | MS.gene07315 | 0.820136 | 8.05E-53 | -1.69E-46 |
| MS.gene058002 | MS.gene07315 | 0.869373 | 3.25E-66 | -1.69E-46 |
| MS.gene058007 | MS.gene07315 | 0.856441 | 3.21E-62 | -1.69E-46 |
| MS.gene058082 | MS.gene07315 | 0.864152 | 1.49E-64 | -1.69E-46 |
| MS.gene05811 | MS.gene07315 | 0.84065 | 7.65E-58 | -1.69E-46 |
| MS.gene058142 | MS.gene07315 | 0.869451 | 3.07E-66 | -1.69E-46 |
| MS.gene058233 | MS.gene07315 | 0.847039 | 1.49E-59 | -1.69E-46 |
| MS.gene058276 | MS.gene07315 | 0.827709 | 1.35E-54 | -1.69E-46 |
| MS.gene058293 | MS.gene07315 | 0.844363 | 7.92E-59 | -1.69E-46 |
| MS.gene058365 | MS.gene07315 | 0.87419 | 8.19E-68 | -1.69E-46 |
| MS.gene058444 | MS.gene07315 | 0.810396 | 1.18E-50 | -1.69E-46 |
| MS.gene058660 | MS.gene07315 | 0.859909 | 2.98E-63 | -1.69E-46 |
| MS.gene058700 | MS.gene07315 | 0.83921 | 1.82E-57 | -1.69E-46 |
| MS.gene058710 | MS.gene07315 | 0.865234 | 6.85E-65 | -1.69E-46 |
| MS.gene058748 | MS.gene07315 | 0.801393 | 9.20E-49 | -1.69E-46 |
| MS.gene058787 | MS.gene07315 | 0.80447 | 2.13E-49 | -1.69E-46 |
| MS.gene05886 | MS.gene07315 | 0.863099 | 3.17E-64 | -1.69E-46 |
| MS.gene058928 | MS.gene07315 | 0.833368 | 5.55E-56 | -1.69E-46 |
| MS.gene058948 | MS.gene07315 | 0.832949 | 7.06E-56 | -1.69E-46 |
| MS.gene058949 | MS.gene07315 | 0.839967 | 1.15E-57 | -1.69E-46 |
| MS.gene059011 | MS.gene07315 | 0.828484 | 8.76E-55 | -1.69E-46 |
| MS.gene05907 | MS.gene07315 | 0.851609 | 7.94E-61 | -1.69E-46 |
| MS.gene059285 | MS.gene07315 | 0.83851 | 2.76E-57 | -1.69E-46 |
| MS.gene059294 | MS.gene07315 | 0.803202 | 3.90E-49 | -1.69E-46 |
| MS.gene059366 | MS.gene07315 | 0.806004 | 1.02E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene07315 | 0.861355 | 1.09E-63 | -1.69E-46 |
| MS.gene059462 | MS.gene07315 | 0.815212 | 1.04E-51 | -1.69E-46 |
| MS.gene059597 | MS.gene07315 | 0.832121 | 1.13E-55 | -1.69E-46 |
| MS.gene05959 | MS.gene07315 | 0.810187 | 1.31E-50 | -1.69E-46 |
| MS.gene059676 | MS.gene07315 | 0.858752 | 6.64E-63 | -1.69E-46 |
| MS.gene059688 | MS.gene07315 | 0.89883 | 3.61E-77 | -1.69E-46 |
| MS.gene059692 | MS.gene07315 | 0.902413 | 9.95E-79 | -1.69E-46 |
| MS.gene059695 | MS.gene07315 | 0.903961 | 2.02E-79 | -1.69E-46 |
| MS.gene05984 | MS.gene07315 | 0.858365 | 8.66E-63 | -1.69E-46 |
| MS.gene059894 | MS.gene07315 | 0.843398 | 1.44E-58 | -1.69E-46 |
| MS.gene059899 | MS.gene07315 | 0.806498 | 7.99E-50 | -1.69E-46 |
| MS.gene060247 | MS.gene07315 | 0.817302 | 3.54E-52 | -1.69E-46 |
| MS.gene06037 | MS.gene07315 | 0.810612 | 1.06E-50 | -1.69E-46 |
| MS.gene060403 | MS.gene07315 | 0.820572 | 6.39E-53 | -1.69E-46 |
| MS.gene060407 | MS.gene07315 | 0.843169 | 1.65E-58 | -1.69E-46 |
| MS.gene060496 | MS.gene07315 | 0.804226 | 2.39E-49 | -1.69E-46 |
| MS.gene06090 | MS.gene07315 | 0.80359 | 3.24E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene07315 | 0.884738 | 1.48E-71 | -1.69E-46 |
| MS.gene061051 | MS.gene07315 | -0.836146 | 1.11E-56 | -1.69E-46 |
| MS.gene061154 | MS.gene07315 | 0.841445 | 4.73E-58 | -1.69E-46 |
| MS.gene061159 | MS.gene07315 | 0.814623 | 1.40E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07315.t1 | MTR_1g086840 | 82.412 | 199 | 11 | 3 | 1 | 182 | 1 | 192 | 5.21e-111 | 315 |
| MS.gene07315.t1 | MTR_1g086840 | 82.412 | 199 | 11 | 3 | 1 | 182 | 1 | 192 | 2.68e-110 | 315 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07315.t1 | AT4G01995 | 54.190 | 179 | 57 | 2 | 21 | 182 | 27 | 197 | 1.09e-54 | 174 |
| MS.gene07315.t1 | AT4G01995 | 60.265 | 151 | 43 | 1 | 49 | 182 | 16 | 166 | 7.95e-54 | 171 |
| MS.gene07315.t1 | AT4G01995 | 56.463 | 147 | 56 | 1 | 21 | 167 | 27 | 165 | 2.30e-47 | 153 |
| MS.gene07315.t1 | AT1G64680 | 29.375 | 160 | 77 | 6 | 51 | 182 | 36 | 187 | 3.98e-14 | 67.8 |
| MS.gene07315.t1 | AT1G64680 | 29.375 | 160 | 77 | 6 | 51 | 182 | 36 | 187 | 9.62e-14 | 67.4 |
Find 48 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCAACGCTTTGTTCTAA+TGG | 0.234706 | 1.4:+69186690 | MS.gene07315:CDS |
| GCAGAAGATGCAAACCGTTT+TGG | 0.270080 | 1.4:-69186775 | None:intergenic |
| CAATTTGTTTCGCACCAAAT+TGG | 0.279978 | 1.4:+69186921 | MS.gene07315:CDS |
| TTTGTTTCCTCCATTCCTTT+TGG | 0.289746 | 1.4:+69188066 | MS.gene07315:CDS |
| GAAAATTACCGTAGCTTCTA+TGG | 0.292895 | 1.4:-69187155 | None:intergenic |
| TTAGGTTACCTGAACCAATT+TGG | 0.303056 | 1.4:-69186935 | None:intergenic |
| AACCTGTGTTGGAAACTTAC+AGG | 0.345038 | 1.4:-69188509 | None:intergenic |
| GTCTACAGAATTGACTTTGC+AGG | 0.348660 | 1.4:-69188303 | None:intergenic |
| GTTTCGCACCAAATTGGTTC+AGG | 0.358197 | 1.4:+69186927 | MS.gene07315:CDS |
| TCTTCTTCTTCATCTTCATC+AGG | 0.361445 | 1.4:+69186750 | MS.gene07315:CDS |
| TTAGAACAAAGCGTTGGAAT+TGG | 0.365725 | 1.4:-69186687 | None:intergenic |
| TGTCGAAAGATGCAAGTATC+TGG | 0.367315 | 1.4:+69188454 | MS.gene07315:intron |
| GCAACTTTGCCTCCACCTAT+AGG | 0.420034 | 1.4:-69188112 | None:intergenic |
| TCAAAGAGTGAATACAAGCC+TGG | 0.439154 | 1.4:+69186877 | MS.gene07315:CDS |
| AGGCAAAGTTGCCGCTATAA+TGG | 0.445748 | 1.4:+69188123 | MS.gene07315:CDS |
| TCAATTAGTCCGTCATATCC+AGG | 0.477685 | 1.4:-69187088 | None:intergenic |
| AAAATGCTCATAGCTCCTAT+AGG | 0.484909 | 1.4:+69188097 | MS.gene07315:CDS |
| TTACTGCACTTACTTGTCAA+TGG | 0.489234 | 1.4:+69188270 | MS.gene07315:CDS |
| TACCGTAGCTTCTATGGTAT+CGG | 0.506593 | 1.4:-69187149 | None:intergenic |
| ATCTTCATCAGGACCCAAAA+CGG | 0.508312 | 1.4:+69186761 | MS.gene07315:CDS |
| GGATGGGACTCGAAGAAACC+TGG | 0.509195 | 1.4:+69187070 | MS.gene07315:CDS |
| CAAAGAGTGAATACAAGCCT+GGG | 0.509583 | 1.4:+69186878 | MS.gene07315:CDS |
| AAGGCGCTAAGTATTGTTGT+TGG | 0.517773 | 1.4:+69186657 | MS.gene07315:CDS |
| GAAGAATCACTAACCTGTGT+TGG | 0.521242 | 1.4:-69188520 | None:intergenic |
| ACTTACTTGTCAATGGCTCA+TGG | 0.525178 | 1.4:+69188277 | MS.gene07315:CDS |
| TCTACAGAATTGACTTTGCA+GGG | 0.526670 | 1.4:-69188302 | None:intergenic |
| GCGCTAAGTATTGTTGTTGG+CGG | 0.530949 | 1.4:+69186660 | MS.gene07315:CDS |
| CTTACTTGTCAATGGCTCAT+GGG | 0.539633 | 1.4:+69188278 | MS.gene07315:CDS |
| CTCCGATACCATAGAAGCTA+CGG | 0.540098 | 1.4:+69187147 | MS.gene07315:CDS |
| TACTATAACAGGAAGTGGGA+TGG | 0.548952 | 1.4:+69187053 | MS.gene07315:intron |
| TTATAGAGCTCCAAAAGGAA+TGG | 0.549533 | 1.4:-69188076 | None:intergenic |
| ATTTGGTGCGAAACAAATTG+AGG | 0.552877 | 1.4:-69186918 | None:intergenic |
| CTCATAGCTCCTATAGGTGG+AGG | 0.565279 | 1.4:+69188103 | MS.gene07315:CDS |
| TAGTGCCTTTCATCATTAGA+CGG | 0.569097 | 1.4:-69187120 | None:intergenic |
| ATTCCATTAGAACAAAGCGT+TGG | 0.570606 | 1.4:-69186693 | None:intergenic |
| AAAATACTATAACAGGAAGT+GGG | 0.571265 | 1.4:+69187049 | MS.gene07315:intron |
| TCGAAGAAACCTGGATATGA+CGG | 0.573061 | 1.4:+69187079 | MS.gene07315:CDS |
| ACTATAACAGGAAGTGGGAT+GGG | 0.573427 | 1.4:+69187054 | MS.gene07315:intron |
| AACAAATCATCAATAACCCC+AGG | 0.586570 | 1.4:-69186895 | None:intergenic |
| CACCTGTAAGTTTCCAACAC+AGG | 0.597620 | 1.4:+69188507 | MS.gene07315:CDS |
| AAAGTTGCCGCTATAATGGT+TGG | 0.601706 | 1.4:+69188127 | MS.gene07315:CDS |
| TAGAGCTCCAAAAGGAATGG+AGG | 0.615600 | 1.4:-69188073 | None:intergenic |
| GCTAACCGTCTAATGATGAA+AGG | 0.626704 | 1.4:+69187115 | MS.gene07315:CDS |
| TCTGGAGGAAGCAAGTGTGT+TGG | 0.632128 | 1.4:+69188472 | MS.gene07315:CDS |
| ATGCTCATAGCTCCTATAGG+TGG | 0.633669 | 1.4:+69188100 | MS.gene07315:CDS |
| CGAAAGATGCAAGTATCTGG+AGG | 0.664975 | 1.4:+69188457 | MS.gene07315:intron |
| AGACTCACCAACCATTATAG+CGG | 0.701172 | 1.4:-69188134 | None:intergenic |
| AAAGAGTGAATACAAGCCTG+GGG | 0.716715 | 1.4:+69186879 | MS.gene07315:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTTAAATAAATGTTTA+AGG | - | chr1.4:69188240-69188259 | None:intergenic | 10.0% |
| !! | ATATATGAATATGATTAATG+TGG | + | chr1.4:69187010-69187029 | MS.gene07315:intron | 15.0% |
| !! | AAAGCTATAAATAAGTTAAC+TGG | - | chr1.4:69186970-69186989 | None:intergenic | 20.0% |
| !! | AAATCCTAAGATGATAAAAA+TGG | + | chr1.4:69187599-69187618 | MS.gene07315:intron | 20.0% |
| !! | AAGTTTAGAAGAATCATATA+AGG | - | chr1.4:69187977-69187996 | None:intergenic | 20.0% |
| !! | AGATTATCAAACTGTTTATA+AGG | + | chr1.4:69187364-69187383 | MS.gene07315:intron | 20.0% |
| !! | GAATAAGTAACATTGTATTA+CGG | - | chr1.4:69187879-69187898 | None:intergenic | 20.0% |
| !! | TATAAATAAGTTAACTGGAA+GGG | - | chr1.4:69186965-69186984 | None:intergenic | 20.0% |
| !! | TATGTACTATAAAATGTTGT+AGG | + | chr1.4:69188427-69188446 | MS.gene07315:intron | 20.0% |
| !!! | AGATAAGAATTTGATGTTTT+TGG | + | chr1.4:69187661-69187680 | MS.gene07315:intron | 20.0% |
| !!! | ATAAGAATTTGATGTTTTTG+GGG | + | chr1.4:69187663-69187682 | MS.gene07315:intron | 20.0% |
| !!! | GATAAGAATTTGATGTTTTT+GGG | + | chr1.4:69187662-69187681 | MS.gene07315:intron | 20.0% |
| !!! | GTTTTGATTGAATTTGAATT+AGG | + | chr1.4:69186837-69186856 | MS.gene07315:intron | 20.0% |
| !!! | TAATACAATGTTACTTATTC+TGG | + | chr1.4:69187879-69187898 | MS.gene07315:intron | 20.0% |
| !!! | TTATTTAAGTTTTGAAGCAA+GGG | + | chr1.4:69188247-69188266 | MS.gene07315:intron | 20.0% |
| !!! | TTTATTTAAGTTTTGAAGCA+AGG | + | chr1.4:69188246-69188265 | MS.gene07315:intron | 20.0% |
| !!! | TTTTAGAAAGAAAGAAAAGA+GGG | + | chr1.4:69186987-69187006 | MS.gene07315:intron | 20.0% |
| ! | AAAATACTATAACAGGAAGT+GGG | + | chr1.4:69187049-69187068 | MS.gene07315:intron | 25.0% |
| ! | ATAAATAAGTTAACTGGAAG+GGG | - | chr1.4:69186964-69186983 | None:intergenic | 25.0% |
| ! | ATGAATATGATTAATGTGGT+GGG | + | chr1.4:69187014-69187033 | MS.gene07315:intron | 25.0% |
| ! | CTATAAATAAGTTAACTGGA+AGG | - | chr1.4:69186966-69186985 | None:intergenic | 25.0% |
| ! | GAGTATGAAAATACTATAAC+AGG | + | chr1.4:69187042-69187061 | MS.gene07315:intron | 25.0% |
| ! | TAGTTATCTTTGCGAAAAAA+TGG | + | chr1.4:69187778-69187797 | MS.gene07315:intron | 25.0% |
| ! | TATGAATATGATTAATGTGG+TGG | + | chr1.4:69187013-69187032 | MS.gene07315:intron | 25.0% |
| ! | TCATCTTGTATTATTGAAAG+TGG | + | chr1.4:69188402-69188421 | MS.gene07315:intron | 25.0% |
| ! | TGATTCTTCTAAACTTTGAA+TGG | + | chr1.4:69187981-69188000 | MS.gene07315:intron | 25.0% |
| ! | TGATTGAATTTGAATTAGGT+GGG | + | chr1.4:69186841-69186860 | MS.gene07315:intron | 25.0% |
| ! | TTGATTGAATTTGAATTAGG+TGG | + | chr1.4:69186840-69186859 | MS.gene07315:intron | 25.0% |
| !! | TAAATTTTGTGTGACTGTTT+AGG | + | chr1.4:69187326-69187345 | MS.gene07315:intron | 25.0% |
| !!! | ATATAAACCTTTTGAAACCA+TGG | - | chr1.4:69187248-69187267 | None:intergenic | 25.0% |
| !!! | CTTTTAGAAAGAAAGAAAAG+AGG | + | chr1.4:69186986-69187005 | MS.gene07315:intron | 25.0% |
| !!! | GTTTCCATTTTTATCATCTT+AGG | - | chr1.4:69187606-69187625 | None:intergenic | 25.0% |
| AGCTTTACTTTCTCTTTCTA+AGG | - | chr1.4:69187555-69187574 | None:intergenic | 30.0% | |
| GAAAATACTATAACAGGAAG+TGG | + | chr1.4:69187048-69187067 | MS.gene07315:intron | 30.0% | |
| ! | GAAAGAGAAAGTAAAGCTTT+TGG | + | chr1.4:69187557-69187576 | MS.gene07315:intron | 30.0% |
| !! | TGAAGTGGATTGGAATAAAA+CGG | - | chr1.4:69187827-69187846 | None:intergenic | 30.0% |
| AAAATGCTCATAGCTCCTAT+AGG | + | chr1.4:69188097-69188116 | MS.gene07315:CDS | 35.0% | |
| AACAAATCATCAATAACCCC+AGG | - | chr1.4:69186898-69186917 | None:intergenic | 35.0% | |
| AACTCTCAAAACCAAAATGG+TGG | - | chr1.4:69187706-69187725 | None:intergenic | 35.0% | |
| AATTCTGTAGACCTATCAGA+TGG | + | chr1.4:69188314-69188333 | MS.gene07315:intron | 35.0% | |
| ACATTGTATTACGGTATGTC+TGG | - | chr1.4:69187870-69187889 | None:intergenic | 35.0% | |
| ACCAAAACCATGGTTTCAAA+AGG | + | chr1.4:69187238-69187257 | MS.gene07315:intron | 35.0% | |
| ATTCCATTAGAACAAAGCGT+TGG | - | chr1.4:69186696-69186715 | None:intergenic | 35.0% | |
| CCAAACTCTCAAAACCAAAA+TGG | - | chr1.4:69187709-69187728 | None:intergenic | 35.0% | |
| GAAAATTACCGTAGCTTCTA+TGG | - | chr1.4:69187158-69187177 | None:intergenic | 35.0% | |
| GGTATAGATCAGGTATGTTT+GGG | + | chr1.4:69187727-69187746 | MS.gene07315:intron | 35.0% | |
| TAGAGTTGAATGAAGTGGAT+TGG | - | chr1.4:69187837-69187856 | None:intergenic | 35.0% | |
| TAGTGCCTTTCATCATTAGA+CGG | - | chr1.4:69187123-69187142 | None:intergenic | 35.0% | |
| TCATAATAAGCACTTGTGAG+CGG | + | chr1.4:69187508-69187527 | MS.gene07315:intron | 35.0% | |
| TCTTCTTCTTCATCTTCATC+AGG | + | chr1.4:69186750-69186769 | MS.gene07315:CDS | 35.0% | |
| TGGTATAGAGTTGAATGAAG+TGG | - | chr1.4:69187842-69187861 | None:intergenic | 35.0% | |
| TGGTATAGATCAGGTATGTT+TGG | + | chr1.4:69187726-69187745 | MS.gene07315:intron | 35.0% | |
| TTACTGCACTTACTTGTCAA+TGG | + | chr1.4:69188270-69188289 | MS.gene07315:CDS | 35.0% | |
| TTAGGTTACCTGAACCAATT+TGG | - | chr1.4:69186938-69186957 | None:intergenic | 35.0% | |
| TTATAGAGCTCCAAAAGGAA+TGG | - | chr1.4:69188079-69188098 | None:intergenic | 35.0% | |
| TTCCTTACAAACCAAAACCA+TGG | + | chr1.4:69187228-69187247 | MS.gene07315:intron | 35.0% | |
| TTGAGAGTTTGGTATAGATC+AGG | + | chr1.4:69187717-69187736 | MS.gene07315:intron | 35.0% | |
| ! | AATATGATTAATGTGGTGGG+TGG | + | chr1.4:69187017-69187036 | MS.gene07315:intron | 35.0% |
| ! | ATTCCAACGCTTTGTTCTAA+TGG | + | chr1.4:69186690-69186709 | MS.gene07315:CDS | 35.0% |
| ! | CAATTTGTTTCGCACCAAAT+TGG | + | chr1.4:69186921-69186940 | MS.gene07315:CDS | 35.0% |
| ! | GCATTTTATAGAGCTCCAAA+AGG | - | chr1.4:69188084-69188103 | None:intergenic | 35.0% |
| ! | TAGCACTTATGTCTTGTTAC+AGG | + | chr1.4:69188027-69188046 | MS.gene07315:intron | 35.0% |
| ! | TCTACAGAATTGACTTTGCA+GGG | - | chr1.4:69188305-69188324 | None:intergenic | 35.0% |
| ! | TGTTACAGGTACGAATTTTG+AGG | + | chr1.4:69188041-69188060 | MS.gene07315:intron | 35.0% |
| ! | TTTGTTTCCTCCATTCCTTT+TGG | + | chr1.4:69188066-69188085 | MS.gene07315:CDS | 35.0% |
| !! | AGCTGTTTTCATAAGCTATC+TGG | - | chr1.4:69187417-69187436 | None:intergenic | 35.0% |
| !! | ATTTGGTGCGAAACAAATTG+AGG | - | chr1.4:69186921-69186940 | None:intergenic | 35.0% |
| !! | TTAGAACAAAGCGTTGGAAT+TGG | - | chr1.4:69186690-69186709 | None:intergenic | 35.0% |
| !!! | AACCATGGTTTTGGTTTGTA+AGG | - | chr1.4:69187233-69187252 | None:intergenic | 35.0% |
| !!! | ACCTTTTGAAACCATGGTTT+TGG | - | chr1.4:69187242-69187261 | None:intergenic | 35.0% |
| !!! | CCATTTTGGTTTTGAGAGTT+TGG | + | chr1.4:69187706-69187725 | MS.gene07315:intron | 35.0% |
| !!! | GAATTTGATGTTTTTGGGGA+TGG | + | chr1.4:69187667-69187686 | MS.gene07315:intron | 35.0% |
| AAAGAGTGAATACAAGCCTG+GGG | + | chr1.4:69186879-69186898 | MS.gene07315:CDS | 40.0% | |
| AAAGTTGCCGCTATAATGGT+TGG | + | chr1.4:69188127-69188146 | MS.gene07315:CDS | 40.0% | |
| ACTATAACAGGAAGTGGGAT+GGG | + | chr1.4:69187054-69187073 | MS.gene07315:intron | 40.0% | |
| ACTTACTTGTCAATGGCTCA+TGG | + | chr1.4:69188277-69188296 | MS.gene07315:CDS | 40.0% | |
| AGACTCACCAACCATTATAG+CGG | - | chr1.4:69188137-69188156 | None:intergenic | 40.0% | |
| AGATGGAACCTCATGAATAG+TGG | + | chr1.4:69188331-69188350 | MS.gene07315:intron | 40.0% | |
| AGTCATAAACACACAGCGAA+AGG | - | chr1.4:69188371-69188390 | None:intergenic | 40.0% | |
| ATCTTCATCAGGACCCAAAA+CGG | + | chr1.4:69186761-69186780 | MS.gene07315:CDS | 40.0% | |
| ATGGAACCTCATGAATAGTG+GGG | + | chr1.4:69188333-69188352 | MS.gene07315:intron | 40.0% | |
| CAAAGAGTGAATACAAGCCT+GGG | + | chr1.4:69186878-69186897 | MS.gene07315:CDS | 40.0% | |
| CTTACTTGTCAATGGCTCAT+GGG | + | chr1.4:69188278-69188297 | MS.gene07315:CDS | 40.0% | |
| GATGGAACCTCATGAATAGT+GGG | + | chr1.4:69188332-69188351 | MS.gene07315:intron | 40.0% | |
| GCTAACCGTCTAATGATGAA+AGG | + | chr1.4:69187115-69187134 | MS.gene07315:CDS | 40.0% | |
| GGTGTATGTGTATCCAAACA+GGG | + | chr1.4:69187529-69187548 | MS.gene07315:intron | 40.0% | |
| TACCGTAGCTTCTATGGTAT+CGG | - | chr1.4:69187152-69187171 | None:intergenic | 40.0% | |
| TACTATAACAGGAAGTGGGA+TGG | + | chr1.4:69187053-69187072 | MS.gene07315:intron | 40.0% | |
| TAGATCAGGTATGTTTGGGT+TGG | + | chr1.4:69187731-69187750 | MS.gene07315:intron | 40.0% | |
| TCAAAGAGTGAATACAAGCC+TGG | + | chr1.4:69186877-69186896 | MS.gene07315:CDS | 40.0% | |
| TCAATTAGTCCGTCATATCC+AGG | - | chr1.4:69187091-69187110 | None:intergenic | 40.0% | |
| TCGAAGAAACCTGGATATGA+CGG | + | chr1.4:69187079-69187098 | MS.gene07315:CDS | 40.0% | |
| TGTCGAAAGATGCAAGTATC+TGG | + | chr1.4:69188454-69188473 | MS.gene07315:intron | 40.0% | |
| TTCATGAGGTTCCATCTGAT+AGG | - | chr1.4:69188328-69188347 | None:intergenic | 40.0% | |
| ! | AAGGCGCTAAGTATTGTTGT+TGG | + | chr1.4:69186657-69186676 | MS.gene07315:CDS | 40.0% |
| ! | AAGTGCTAACAAACTTGCTC+TGG | - | chr1.4:69188015-69188034 | None:intergenic | 40.0% |
| ! | CAGAAGATGCAAACCGTTTT+GGG | - | chr1.4:69186777-69186796 | None:intergenic | 40.0% |
| ! | GTCTACAGAATTGACTTTGC+AGG | - | chr1.4:69188306-69188325 | None:intergenic | 40.0% |
| ! | TTACGGTATGTCTGGAATTG+TGG | - | chr1.4:69187862-69187881 | None:intergenic | 40.0% |
| !! | TCACTAGCTTGTTACGTTCA+GGG | - | chr1.4:69188203-69188222 | None:intergenic | 40.0% |
| !!! | TTGATGTTTTTGGGGATGGA+TGG | + | chr1.4:69187671-69187690 | MS.gene07315:intron | 40.0% |
| AGGCAAAGTTGCCGCTATAA+TGG | + | chr1.4:69188123-69188142 | MS.gene07315:CDS | 45.0% | |
| ATGCTCATAGCTCCTATAGG+TGG | + | chr1.4:69188100-69188119 | MS.gene07315:CDS | 45.0% | |
| CGAAAGATGCAAGTATCTGG+AGG | + | chr1.4:69188457-69188476 | MS.gene07315:intron | 45.0% | |
| CGGTGTATGTGTATCCAAAC+AGG | + | chr1.4:69187528-69187547 | MS.gene07315:intron | 45.0% | |
| CTCCGATACCATAGAAGCTA+CGG | + | chr1.4:69187147-69187166 | MS.gene07315:CDS | 45.0% | |
| TAGAGCTCCAAAAGGAATGG+AGG | - | chr1.4:69188076-69188095 | None:intergenic | 45.0% | |
| TGATCACCCCACTATTCATG+AGG | - | chr1.4:69188342-69188361 | None:intergenic | 45.0% | |
| ! | GCAGAAGATGCAAACCGTTT+TGG | - | chr1.4:69186778-69186797 | None:intergenic | 45.0% |
| ! | GCGCTAAGTATTGTTGTTGG+CGG | + | chr1.4:69186660-69186679 | MS.gene07315:CDS | 45.0% |
| ! | GGCAAAGATCTCCACCATTT+TGG | + | chr1.4:69187692-69187711 | MS.gene07315:intron | 45.0% |
| ! | GTTTCGCACCAAATTGGTTC+AGG | + | chr1.4:69186927-69186946 | MS.gene07315:CDS | 45.0% |
| !! | ATCAGGTATGTTTGGGTTGG+TGG | + | chr1.4:69187734-69187753 | MS.gene07315:intron | 45.0% |
| !! | CACTAGCTTGTTACGTTCAG+GGG | - | chr1.4:69188202-69188221 | None:intergenic | 45.0% |
| !! | CTCACTAGCTTGTTACGTTC+AGG | - | chr1.4:69188204-69188223 | None:intergenic | 45.0% |
| !! | TCTCTTTCTAAGGCCCTGTT+TGG | - | chr1.4:69187545-69187564 | None:intergenic | 45.0% |
| CTCATAGCTCCTATAGGTGG+AGG | + | chr1.4:69188103-69188122 | MS.gene07315:CDS | 50.0% | |
| GCAACTTTGCCTCCACCTAT+AGG | - | chr1.4:69188115-69188134 | None:intergenic | 50.0% | |
| GTTAACTGGAAGGGGCTGTT+AGG | - | chr1.4:69186956-69186975 | None:intergenic | 50.0% | |
| TCTGGAGGAAGCAAGTGTGT+TGG | + | chr1.4:69188472-69188491 | MS.gene07315:CDS | 50.0% | |
| GGATGGGACTCGAAGAAACC+TGG | + | chr1.4:69187070-69187089 | MS.gene07315:CDS | 55.0% | |
| !! | GGTTGGTGGCTAGAGTGGAA+TGG | + | chr1.4:69187748-69187767 | MS.gene07315:intron | 55.0% |
| !! | GTTTGGGTTGGTGGCTAGAG+TGG | + | chr1.4:69187743-69187762 | MS.gene07315:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 69186654 | 69188528 | 69186654 | ID=MS.gene07315 |
| chr1.4 | mRNA | 69186654 | 69188528 | 69186654 | ID=MS.gene07315.t1;Parent=MS.gene07315 |
| chr1.4 | exon | 69186654 | 69186782 | 69186654 | ID=MS.gene07315.t1.exon1;Parent=MS.gene07315.t1 |
| chr1.4 | CDS | 69186654 | 69186782 | 69186654 | ID=cds.MS.gene07315.t1;Parent=MS.gene07315.t1 |
| chr1.4 | exon | 69186859 | 69186948 | 69186859 | ID=MS.gene07315.t1.exon2;Parent=MS.gene07315.t1 |
| chr1.4 | CDS | 69186859 | 69186948 | 69186859 | ID=cds.MS.gene07315.t1;Parent=MS.gene07315.t1 |
| chr1.4 | exon | 69187064 | 69187168 | 69187064 | ID=MS.gene07315.t1.exon3;Parent=MS.gene07315.t1 |
| chr1.4 | CDS | 69187064 | 69187168 | 69187064 | ID=cds.MS.gene07315.t1;Parent=MS.gene07315.t1 |
| chr1.4 | exon | 69188049 | 69188148 | 69188049 | ID=MS.gene07315.t1.exon4;Parent=MS.gene07315.t1 |
| chr1.4 | CDS | 69188049 | 69188148 | 69188049 | ID=cds.MS.gene07315.t1;Parent=MS.gene07315.t1 |
| chr1.4 | exon | 69188264 | 69188319 | 69188264 | ID=MS.gene07315.t1.exon5;Parent=MS.gene07315.t1 |
| chr1.4 | CDS | 69188264 | 69188319 | 69188264 | ID=cds.MS.gene07315.t1;Parent=MS.gene07315.t1 |
| chr1.4 | exon | 69188463 | 69188528 | 69188463 | ID=MS.gene07315.t1.exon6;Parent=MS.gene07315.t1 |
| chr1.4 | CDS | 69188463 | 69188528 | 69188463 | ID=cds.MS.gene07315.t1;Parent=MS.gene07315.t1 |
| Gene Sequence |
| Protein sequence |
