AlfalfaGEDB | MS.gene07315

M. sativa cultivar XinJiangDaYe / MS.gene07315

KEGG: -
GO: -
PFAM: PF13225.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07315.t1	KEH43195.1	75.4	199	25	3	1	182	1	192	2.40E-73	285

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07315.t1	C7AU21	24.8	145	89	3	54	182	80	220	1.1e-07	58.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07315.t1	A0A072VYP0	75.4	199	25	3	1	182	1	192	1.7e-73	285.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene07315	0.805465	1.32E-49	-1.69E-46
MS.gene049170	MS.gene07315	0.820704	5.96E-53	-1.69E-46
MS.gene049346	MS.gene07315	0.820789	5.70E-53	-1.69E-46
MS.gene049351	MS.gene07315	0.822642	2.12E-53	-1.69E-46
MS.gene049356	MS.gene07315	0.827762	1.31E-54	-1.69E-46
MS.gene049661	MS.gene07315	0.817963	2.51E-52	-1.69E-46
MS.gene049662	MS.gene07315	0.814487	1.50E-51	-1.69E-46
MS.gene049758	MS.gene07315	0.829445	5.13E-55	-1.69E-46
MS.gene049910	MS.gene07315	0.809379	1.95E-50	-1.69E-46
MS.gene050128	MS.gene07315	0.815919	7.22E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07315.t1	MTR_1g086840	82.412	199	11	3	1	182	1	192	5.21e-111	315
MS.gene07315.t1	MTR_1g086840	82.412	199	11	3	1	182	1	192	2.68e-110	315

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07315.t1	AT4G01995	54.190	179	57	2	21	182	27	197	1.09e-54	174
MS.gene07315.t1	AT4G01995	60.265	151	43	1	49	182	16	166	7.95e-54	171
MS.gene07315.t1	AT4G01995	56.463	147	56	1	21	167	27	165	2.30e-47	153
MS.gene07315.t1	AT1G64680	29.375	160	77	6	51	182	36	187	3.98e-14	67.8
MS.gene07315.t1	AT1G64680	29.375	160	77	6	51	182	36	187	9.62e-14	67.4

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Find 48 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACTATAACAGGAAGT+GGG	0.571265	1.4:+69187049	MS.gene07315:intron
AAAATGCTCATAGCTCCTAT+AGG	0.484909	1.4:+69188097	MS.gene07315:CDS
AAAGAGTGAATACAAGCCTG+GGG	0.716715	1.4:+69186879	MS.gene07315:CDS
AAAGTTGCCGCTATAATGGT+TGG	0.601706	1.4:+69188127	MS.gene07315:CDS
AACAAATCATCAATAACCCC+AGG	0.586570	1.4:-69186895	None:intergenic
AACCTGTGTTGGAAACTTAC+AGG	0.345038	1.4:-69188509	None:intergenic
AAGGCGCTAAGTATTGTTGT+TGG	0.517773	1.4:+69186657	MS.gene07315:CDS
ACTATAACAGGAAGTGGGAT+GGG	0.573427	1.4:+69187054	MS.gene07315:intron
ACTTACTTGTCAATGGCTCA+TGG	0.525178	1.4:+69188277	MS.gene07315:CDS
AGACTCACCAACCATTATAG+CGG	0.701172	1.4:-69188134	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCTTTACTTTCTCTTTCTA+AGG	-	chr1.4:69187555-69187574	None:intergenic	30.0%
GAAAATACTATAACAGGAAG+TGG	+	chr1.4:69187048-69187067	MS.gene07315:intron	30.0%
AAAATGCTCATAGCTCCTAT+AGG	+	chr1.4:69188097-69188116	MS.gene07315:CDS	35.0%
AACAAATCATCAATAACCCC+AGG	-	chr1.4:69186898-69186917	None:intergenic	35.0%
AACTCTCAAAACCAAAATGG+TGG	-	chr1.4:69187706-69187725	None:intergenic	35.0%
AATTCTGTAGACCTATCAGA+TGG	+	chr1.4:69188314-69188333	MS.gene07315:intron	35.0%
ACATTGTATTACGGTATGTC+TGG	-	chr1.4:69187870-69187889	None:intergenic	35.0%
ACCAAAACCATGGTTTCAAA+AGG	+	chr1.4:69187238-69187257	MS.gene07315:intron	35.0%
ATTCCATTAGAACAAAGCGT+TGG	-	chr1.4:69186696-69186715	None:intergenic	35.0%
CCAAACTCTCAAAACCAAAA+TGG	-	chr1.4:69187709-69187728	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	69186654	69188528	69186654	ID=MS.gene07315
chr1.4	mRNA	69186654	69188528	69186654	ID=MS.gene07315.t1;Parent=MS.gene07315
chr1.4	exon	69186654	69186782	69186654	ID=MS.gene07315.t1.exon1;Parent=MS.gene07315.t1
chr1.4	CDS	69186654	69186782	69186654	ID=cds.MS.gene07315.t1;Parent=MS.gene07315.t1
chr1.4	exon	69186859	69186948	69186859	ID=MS.gene07315.t1.exon2;Parent=MS.gene07315.t1
chr1.4	CDS	69186859	69186948	69186859	ID=cds.MS.gene07315.t1;Parent=MS.gene07315.t1
chr1.4	exon	69187064	69187168	69187064	ID=MS.gene07315.t1.exon3;Parent=MS.gene07315.t1
chr1.4	CDS	69187064	69187168	69187064	ID=cds.MS.gene07315.t1;Parent=MS.gene07315.t1
chr1.4	exon	69188049	69188148	69188049	ID=MS.gene07315.t1.exon4;Parent=MS.gene07315.t1
chr1.4	CDS	69188049	69188148	69188049	ID=cds.MS.gene07315.t1;Parent=MS.gene07315.t1
chr1.4	exon	69188264	69188319	69188264	ID=MS.gene07315.t1.exon5;Parent=MS.gene07315.t1
chr1.4	CDS	69188264	69188319	69188264	ID=cds.MS.gene07315.t1;Parent=MS.gene07315.t1
chr1.4	exon	69188463	69188528	69188463	ID=MS.gene07315.t1.exon6;Parent=MS.gene07315.t1
chr1.4	CDS	69188463	69188528	69188463	ID=cds.MS.gene07315.t1;Parent=MS.gene07315.t1

Gene Sequence

>MS.gene07315

ATGAAGGCGCTAAGTATTGTTGTTGGCGGTGTTCCAATTCCAACGCTTTGTTCTAATGGAATTCGTAAACGTCAGTTCTGCGTTTCAGCTTCTTCTTCTTCTTCTTCATCTTCATCAGGACCCAAAACGGTTTGCATCTTCTGCTATTGTTTTTCGTGTGCGATTATGAAATATTGTGTGTGTGTTTTGATTGAATTTGAATTAGGTGGGAGTTGCAGCAGCTTCAAAGAGTGAATACAAGCCTGGGGTTATTGATGATTTGTTCCTCAATTTGTTTCGCACCAAATTGGTTCAGGTAACCTAACAGCCCCTTCCAGTTAACTTATTTATAGCTTTTAGAAAGAAAGAAAAGAGGGATATATGAATATGATTAATGTGGTGGGTGGCTGAGTATGAAAATACTATAACAGGAAGTGGGATGGGACTCGAAGAAACCTGGATATGACGGACTAATTGAAGTTGCTAACCGTCTAATGATGAAAGGCACTACAAACTCCGATACCATAGAAGCTACGGTAATTTTCTCTTTCAGAATCTCGATAACTTGTAATAATAGTATTTCGCTTCAGAAGTGTTCCTTACAAACCAAAACCATGGTTTCAAAAGGTTTATATTCAACTGAGTTAATGCAATGCATGTTTGAATTGCATTATTTGAGCTTATAGAAAGACTTAAATTTTGTGTGACTGTTTAGGAGAAGTTATGAAGACAGATTATCAAACTGTTTATAAGGTGTTTTCAGCTTATTTTCATAAGTTCTCCAGATAGCTTATGAAAACAGCTTATATTTTATACGAAGACAATTTAATGTTATTTATCTTTTGCTATAGAAATAGCTTATGTACAAGCGCTTATCATAATAAGCACTTGTGAGCGGTGTATGTGTATCCAAACAGGGCCTTAGAAAGAGAAAGTAAAGCTTTTGGTTCAAGTTAATAAAAAAAAAAATCCTAAGATGATAAAAATGGAAACTTATTTTGTGTAGACTTTTATTTGAAAAACTGATGAGATAAGAATTTGATGTTTTTGGGGATGGATGGCAAAGATCTCCACCATTTTGGTTTTGAGAGTTTGGTATAGATCAGGTATGTTTGGGTTGGTGGCTAGAGTGGAATGGAATAAGCTAGTTATCTTTGCGAAAAAATGGACTTTACTTCATTCAATTCTATTCCGTTTTATTCCAATCCACTTCATTCAACTCTATACCACAATTCCAGACATACCGTAATACAATGTTACTTATTCTGGTCATACATGTATGTGTTTCAACTTTTCACATCACTGCAACATAAGTCATCACATTTGTGATATAGTAATTCACCTTATATGATTCTTCTAAACTTTGAATGGTCATTTGTCCAGAGCAAGTTTGTTAGCACTTATGTCTTGTTACAGGTACGAATTTTGAGGTCTTTGTTTCCTCCATTCCTTTTGGAGCTCTATAAAATGCTCATAGCTCCTATAGGTGGAGGCAAAGTTGCCGCTATAATGGTTGGTGAGTCTGATAATATTACATCTCATTTTACAATTCTTCAAGATGATGTTCCCCTGAACGTAACAAGCTAGTGAGTTTTTTGAGATATCCTTAAACATTTATTTAAGTTTTGAAGCAAGGGTTACTGCACTTACTTGTCAATGGCTCATGGGACCCTGCAAAGTCAATTCTGTAGACCTATCAGATGGAACCTCATGAATAGTGGGGTGATCACTTATACCTTTCGCTGTGTGTTTATGACTGAATAACAATATCATCTTGTATTATTGAAAGTGGTGTATGTACTATAAAATGTTGTAGGTGCATGTCGAAAGATGCAAGTATCTGGAGGAAGCAAGTGTGTTGGTATCTGCATCAACACCTGTAAGTTTCCAACACAG

Protein sequence

>MS.gene07315.t1

MKALSIVVGGVPIPTLCSNGIRKRQFCVSASSSSSSSSSGPKTVGVAAASKSEYKPGVIDDLFLNLFRTKLVQEVGWDSKKPGYDGLIEVANRLMMKGTTNSDTIEATVRILRSLFPPFLLELYKMLIAPIGGGKVAAIMVARVTALTCQWLMGPCKVNSMQVSGGSKCVGICINTCKFPTQ