Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09998.t1 | XP_013469326.1 | 96.8 | 309 | 7 | 1 | 1 | 309 | 1 | 306 | 1.00E-161 | 579.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09998.t1 | Q2N2K1 | 72.9 | 310 | 75 | 3 | 1 | 309 | 1 | 302 | 7.4e-116 | 418.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09998.t1 | A0A072VN17 | 96.8 | 309 | 7 | 1 | 1 | 309 | 1 | 306 | 7.5e-162 | 579.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene09998 | 0.84585 | 3.14E-59 | -1.69E-46 |
| MS.gene049217 | MS.gene09998 | 0.840636 | 7.72E-58 | -1.69E-46 |
| MS.gene049222 | MS.gene09998 | 0.851927 | 6.45E-61 | -1.69E-46 |
| MS.gene049285 | MS.gene09998 | 0.889335 | 2.66E-73 | -1.69E-46 |
| MS.gene049320 | MS.gene09998 | 0.862531 | 4.75E-64 | -1.69E-46 |
| MS.gene04939 | MS.gene09998 | 0.806591 | 7.64E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene09998 | 0.818506 | 1.89E-52 | -1.69E-46 |
| MS.gene049627 | MS.gene09998 | 0.900423 | 7.43E-78 | -1.69E-46 |
| MS.gene05010 | MS.gene09998 | 0.808565 | 2.91E-50 | -1.69E-46 |
| MS.gene050163 | MS.gene09998 | 0.887853 | 9.91E-73 | -1.69E-46 |
| MS.gene050165 | MS.gene09998 | 0.869795 | 2.37E-66 | -1.69E-46 |
| MS.gene050333 | MS.gene09998 | 0.860775 | 1.63E-63 | -1.69E-46 |
| MS.gene050353 | MS.gene09998 | -0.832705 | 8.11E-56 | -1.69E-46 |
| MS.gene050504 | MS.gene09998 | 0.880479 | 5.31E-70 | -1.69E-46 |
| MS.gene050518 | MS.gene09998 | 0.844666 | 6.56E-59 | -1.69E-46 |
| MS.gene050577 | MS.gene09998 | 0.847086 | 1.44E-59 | -1.69E-46 |
| MS.gene050612 | MS.gene09998 | 0.846518 | 2.06E-59 | -1.69E-46 |
| MS.gene050675 | MS.gene09998 | 0.838018 | 3.69E-57 | -1.69E-46 |
| MS.gene050699 | MS.gene09998 | 0.877114 | 8.14E-69 | -1.69E-46 |
| MS.gene050747 | MS.gene09998 | 0.832665 | 8.30E-56 | -1.69E-46 |
| MS.gene050772 | MS.gene09998 | 0.826064 | 3.33E-54 | -1.69E-46 |
| MS.gene050781 | MS.gene09998 | 0.849966 | 2.30E-60 | -1.69E-46 |
| MS.gene050876 | MS.gene09998 | 0.81272 | 3.68E-51 | -1.69E-46 |
| MS.gene05087 | MS.gene09998 | 0.830035 | 3.68E-55 | -1.69E-46 |
| MS.gene050950 | MS.gene09998 | 0.829773 | 4.27E-55 | -1.69E-46 |
| MS.gene050986 | MS.gene09998 | 0.864398 | 1.25E-64 | -1.69E-46 |
| MS.gene05100 | MS.gene09998 | 0.871247 | 7.91E-67 | -1.69E-46 |
| MS.gene051317 | MS.gene09998 | 0.813046 | 3.12E-51 | -1.69E-46 |
| MS.gene051551 | MS.gene09998 | 0.824794 | 6.65E-54 | -1.69E-46 |
| MS.gene051564 | MS.gene09998 | 0.812832 | 3.48E-51 | -1.69E-46 |
| MS.gene051694 | MS.gene09998 | 0.855481 | 6.13E-62 | -1.69E-46 |
| MS.gene051810 | MS.gene09998 | 0.834681 | 2.60E-56 | -1.69E-46 |
| MS.gene051858 | MS.gene09998 | 0.802785 | 4.76E-49 | -1.69E-46 |
| MS.gene051949 | MS.gene09998 | 0.811475 | 6.87E-51 | -1.69E-46 |
| MS.gene052164 | MS.gene09998 | 0.822965 | 1.79E-53 | -1.69E-46 |
| MS.gene052271 | MS.gene09998 | 0.806046 | 9.95E-50 | -1.69E-46 |
| MS.gene052379 | MS.gene09998 | 0.829356 | 5.39E-55 | -1.69E-46 |
| MS.gene052482 | MS.gene09998 | 0.811021 | 8.62E-51 | -1.69E-46 |
| MS.gene052486 | MS.gene09998 | 0.83141 | 1.70E-55 | -1.69E-46 |
| MS.gene052503 | MS.gene09998 | 0.81875 | 1.67E-52 | -1.69E-46 |
| MS.gene052615 | MS.gene09998 | 0.823115 | 1.65E-53 | -1.69E-46 |
| MS.gene052670 | MS.gene09998 | 0.841609 | 4.28E-58 | -1.69E-46 |
| MS.gene052823 | MS.gene09998 | 0.81429 | 1.66E-51 | -1.69E-46 |
| MS.gene052825 | MS.gene09998 | 0.813916 | 2.01E-51 | -1.69E-46 |
| MS.gene053203 | MS.gene09998 | 0.823747 | 1.17E-53 | -1.69E-46 |
| MS.gene053207 | MS.gene09998 | 0.83576 | 1.39E-56 | -1.69E-46 |
| MS.gene053213 | MS.gene09998 | 0.874401 | 6.95E-68 | -1.69E-46 |
| MS.gene053286 | MS.gene09998 | 0.878871 | 1.98E-69 | -1.69E-46 |
| MS.gene053322 | MS.gene09998 | 0.812174 | 4.84E-51 | -1.69E-46 |
| MS.gene053436 | MS.gene09998 | 0.816701 | 4.83E-52 | -1.69E-46 |
| MS.gene053574 | MS.gene09998 | 0.8005 | 1.40E-48 | -1.69E-46 |
| MS.gene053632 | MS.gene09998 | 0.843646 | 1.23E-58 | -1.69E-46 |
| MS.gene053915 | MS.gene09998 | 0.807728 | 4.39E-50 | -1.69E-46 |
| MS.gene054408 | MS.gene09998 | 0.811585 | 6.50E-51 | -1.69E-46 |
| MS.gene054595 | MS.gene09998 | 0.803531 | 3.34E-49 | -1.69E-46 |
| MS.gene054600 | MS.gene09998 | 0.86447 | 1.19E-64 | -1.69E-46 |
| MS.gene054642 | MS.gene09998 | 0.861097 | 1.30E-63 | -1.69E-46 |
| MS.gene05470 | MS.gene09998 | 0.839251 | 1.77E-57 | -1.69E-46 |
| MS.gene054927 | MS.gene09998 | 0.809355 | 1.97E-50 | -1.69E-46 |
| MS.gene054954 | MS.gene09998 | 0.86535 | 6.30E-65 | -1.69E-46 |
| MS.gene055362 | MS.gene09998 | 0.887679 | 1.15E-72 | -1.69E-46 |
| MS.gene055499 | MS.gene09998 | 0.824249 | 8.94E-54 | -1.69E-46 |
| MS.gene055502 | MS.gene09998 | 0.873192 | 1.78E-67 | -1.69E-46 |
| MS.gene055577 | MS.gene09998 | 0.842455 | 2.56E-58 | -1.69E-46 |
| MS.gene055748 | MS.gene09998 | 0.809922 | 1.49E-50 | -1.69E-46 |
| MS.gene055941 | MS.gene09998 | 0.810467 | 1.14E-50 | -1.69E-46 |
| MS.gene056083 | MS.gene09998 | 0.859201 | 4.87E-63 | -1.69E-46 |
| MS.gene056374 | MS.gene09998 | 0.836683 | 8.11E-57 | -1.69E-46 |
| MS.gene056409 | MS.gene09998 | 0.840957 | 6.36E-58 | -1.69E-46 |
| MS.gene056449 | MS.gene09998 | 0.807186 | 5.72E-50 | -1.69E-46 |
| MS.gene056450 | MS.gene09998 | 0.809323 | 2.00E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene09998 | 0.818327 | 2.08E-52 | -1.69E-46 |
| MS.gene056510 | MS.gene09998 | 0.83658 | 8.61E-57 | -1.69E-46 |
| MS.gene056550 | MS.gene09998 | -0.829425 | 5.18E-55 | -1.69E-46 |
| MS.gene056610 | MS.gene09998 | 0.839273 | 1.75E-57 | -1.69E-46 |
| MS.gene056657 | MS.gene09998 | 0.871572 | 6.17E-67 | -1.69E-46 |
| MS.gene056692 | MS.gene09998 | 0.862018 | 6.82E-64 | -1.69E-46 |
| MS.gene057011 | MS.gene09998 | 0.800546 | 1.37E-48 | -1.69E-46 |
| MS.gene057416 | MS.gene09998 | 0.822823 | 1.93E-53 | -1.69E-46 |
| MS.gene057658 | MS.gene09998 | 0.841938 | 3.51E-58 | -1.69E-46 |
| MS.gene057831 | MS.gene09998 | 0.861148 | 1.26E-63 | -1.69E-46 |
| MS.gene05837 | MS.gene09998 | 0.809242 | 2.08E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene09998 | 0.866952 | 1.96E-65 | -1.69E-46 |
| MS.gene058544 | MS.gene09998 | 0.873068 | 1.96E-67 | -1.69E-46 |
| MS.gene058773 | MS.gene09998 | 0.880135 | 7.04E-70 | -1.69E-46 |
| MS.gene058838 | MS.gene09998 | 0.817425 | 3.32E-52 | -1.69E-46 |
| MS.gene05883 | MS.gene09998 | 0.823572 | 1.29E-53 | -1.69E-46 |
| MS.gene059022 | MS.gene09998 | 0.880786 | 4.12E-70 | -1.69E-46 |
| MS.gene059023 | MS.gene09998 | 0.855609 | 5.62E-62 | -1.69E-46 |
| MS.gene059029 | MS.gene09998 | 0.82341 | 1.41E-53 | -1.69E-46 |
| MS.gene05914 | MS.gene09998 | 0.816722 | 4.78E-52 | -1.69E-46 |
| MS.gene059479 | MS.gene09998 | -0.817256 | 3.62E-52 | -1.69E-46 |
| MS.gene059677 | MS.gene09998 | 0.892403 | 1.64E-74 | -1.69E-46 |
| MS.gene059718 | MS.gene09998 | 0.893176 | 8.02E-75 | -1.69E-46 |
| MS.gene059756 | MS.gene09998 | 0.860611 | 1.83E-63 | -1.69E-46 |
| MS.gene059801 | MS.gene09998 | 0.82026 | 7.53E-53 | -1.69E-46 |
| MS.gene059902 | MS.gene09998 | 0.804043 | 2.61E-49 | -1.69E-46 |
| MS.gene059960 | MS.gene09998 | 0.801602 | 8.33E-49 | -1.69E-46 |
| MS.gene060703 | MS.gene09998 | 0.833861 | 4.18E-56 | -1.69E-46 |
| MS.gene060762 | MS.gene09998 | 0.848868 | 4.66E-60 | -1.69E-46 |
| MS.gene06077 | MS.gene09998 | 0.877189 | 7.67E-69 | -1.69E-46 |
| MS.gene06092 | MS.gene09998 | 0.843451 | 1.39E-58 | -1.69E-46 |
| MS.gene061150 | MS.gene09998 | 0.894787 | 1.77E-75 | -1.69E-46 |
| MS.gene061200 | MS.gene09998 | 0.813828 | 2.10E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09998.t1 | MTR_1g090913 | 96.764 | 309 | 7 | 1 | 1 | 309 | 1 | 306 | 0.0 | 598 |
| MS.gene09998.t1 | MTR_3g465120 | 46.396 | 222 | 118 | 1 | 86 | 307 | 81 | 301 | 1.71e-70 | 221 |
| MS.gene09998.t1 | MTR_4g015990 | 42.917 | 240 | 132 | 2 | 72 | 307 | 1 | 239 | 5.91e-68 | 212 |
| MS.gene09998.t1 | MTR_4g016040 | 44.976 | 209 | 114 | 1 | 94 | 302 | 27 | 234 | 2.32e-62 | 197 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09998.t1 | AT5G04490 | 67.083 | 240 | 79 | 0 | 70 | 309 | 65 | 304 | 2.92e-117 | 340 |
| MS.gene09998.t1 | AT5G04490 | 70.787 | 178 | 52 | 0 | 70 | 247 | 65 | 242 | 6.31e-91 | 271 |
| MS.gene09998.t1 | AT5G58560 | 42.793 | 222 | 126 | 1 | 86 | 307 | 87 | 307 | 5.78e-66 | 209 |
Find 76 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCATAGCAATGCTTATATT+TGG | 0.177370 | 1.4:+72378411 | MS.gene09998:CDS |
| AATGCTTATATTTGGATTCT+TGG | 0.197393 | 1.4:+72378419 | MS.gene09998:CDS |
| TTTGGATTCTTGGTTTCAAT+TGG | 0.256377 | 1.4:+72378429 | MS.gene09998:CDS |
| GGTGCCACTGTTGGTGTTCT+TGG | 0.284632 | 1.4:+72377392 | MS.gene09998:CDS |
| CTCTCCAAGGTTATTAATAA+TGG | 0.286305 | 1.4:-72378788 | None:intergenic |
| GATATCATTGGTAGAAGATA+TGG | 0.303985 | 1.4:+72378345 | MS.gene09998:CDS |
| GAGGTGGTGGTGGTTGTTGC+CGG | 0.304454 | 1.4:-72377218 | None:intergenic |
| AAAGCAATCCTGATAATATA+TGG | 0.321784 | 1.4:-72377713 | None:intergenic |
| GAAATGGGGTACCTGAAAAT+TGG | 0.330597 | 1.4:-72377750 | None:intergenic |
| TTCTGTTCCACTAGTAACTA+TGG | 0.342085 | 1.4:+72378746 | MS.gene09998:CDS |
| TGTTAAGTGCTATTGTGTTC+TGG | 0.376561 | 1.4:+72378155 | MS.gene09998:CDS |
| TTACAAATCTTTCATCTAAA+CGG | 0.377409 | 1.4:-72377322 | None:intergenic |
| AAACTGGTCCATATATTATC+AGG | 0.380119 | 1.4:+72377705 | MS.gene09998:CDS |
| TTCTGGCGTGAATCTCCAAT+TGG | 0.390436 | 1.4:+72378172 | MS.gene09998:CDS |
| GTGGGTTTGTTCCAAGGAAA+AGG | 0.392595 | 1.4:-72377245 | None:intergenic |
| TCCAATTGGGGTTGTTGCAT+TGG | 0.393868 | 1.4:+72378186 | MS.gene09998:CDS |
| TTGGATTCTTGGTTTCAATT+GGG | 0.404183 | 1.4:+72378430 | MS.gene09998:CDS |
| ATTAGATCTTGAGCATTTGC+AGG | 0.415465 | 1.4:-72377359 | None:intergenic |
| ACAGTGTCGTTTGTTGTTGT+GGG | 0.430951 | 1.4:-72377263 | None:intergenic |
| TTTGGTGAATGGTCTCTCCT+TGG | 0.432501 | 1.4:+72377950 | MS.gene09998:CDS |
| TCTGGCGTGAATCTCCAATT+GGG | 0.433764 | 1.4:+72378173 | MS.gene09998:CDS |
| CTCCGTGCACCGCCGTTCAC+CGG | 0.435055 | 1.4:+72377199 | MS.gene09998:CDS |
| GACAGTGTCGTTTGTTGTTG+TGG | 0.438491 | 1.4:-72377264 | None:intergenic |
| AGGAAAAGGGTTGGAGGTGG+TGG | 0.441202 | 1.4:-72377231 | None:intergenic |
| TCATCGACCACCTCAGTAAT+GGG | 0.442023 | 1.4:-72378717 | None:intergenic |
| GCCAATGCAACAACCCCAAT+TGG | 0.443959 | 1.4:-72378187 | None:intergenic |
| CGGCGGTGCACGGAGGAGAA+TGG | 0.444784 | 1.4:-72377191 | None:intergenic |
| GCAGGGTCTGAGCAGAAAAC+TGG | 0.450996 | 1.4:+72377689 | MS.gene09998:intron |
| CTCTCCTTGGTTACTGATCA+AGG | 0.451114 | 1.4:+72377963 | MS.gene09998:CDS |
| AAAAGGGTTGGAGGTGGTGG+TGG | 0.452390 | 1.4:-72377228 | None:intergenic |
| CAGCAAAGTAACGAGCTTCA+AGG | 0.476437 | 1.4:-72377896 | None:intergenic |
| TTAATATCCCAACATAATAG+AGG | 0.477271 | 1.4:-72378132 | None:intergenic |
| GAGGTCCCCTCTATTATGTT+GGG | 0.482902 | 1.4:+72378125 | MS.gene09998:CDS |
| TGGTGGTTGTTGCCGGTGAA+CGG | 0.484199 | 1.4:-72377211 | None:intergenic |
| GACATGTGCAGTTTGATTTG+TGG | 0.485754 | 1.4:+72378637 | MS.gene09998:CDS |
| GTTGTTGTGGGTTTGTTCCA+AGG | 0.487703 | 1.4:-72377251 | None:intergenic |
| CTGTACTACTATTCAGCTCT+AGG | 0.488201 | 1.4:+72378615 | MS.gene09998:CDS |
| CTAGGTGTGGCTGATATCAT+TGG | 0.492948 | 1.4:+72378333 | MS.gene09998:intron |
| TGCCGGTGAACGGCGGTGCA+CGG | 0.494482 | 1.4:-72377201 | None:intergenic |
| GTCATCGACCACCTCAGTAA+TGG | 0.501122 | 1.4:-72378718 | None:intergenic |
| GCCACTGTTGGTGTTCTTGG+CGG | 0.506473 | 1.4:+72377395 | MS.gene09998:CDS |
| TGGGTTTGTTCCAAGGAAAA+GGG | 0.511191 | 1.4:-72377244 | None:intergenic |
| AGCAAAGTAACGAGCTTCAA+GGG | 0.523609 | 1.4:-72377895 | None:intergenic |
| AGAGGTCCCCTCTATTATGT+TGG | 0.534169 | 1.4:+72378124 | MS.gene09998:CDS |
| TTTGTTCCAAGGAAAAGGGT+TGG | 0.535640 | 1.4:-72377240 | None:intergenic |
| GTTCCAAGGAAAAGGGTTGG+AGG | 0.535671 | 1.4:-72377237 | None:intergenic |
| GCAATGATGTGTGGAGGGGA+TGG | 0.536528 | 1.4:+72378208 | MS.gene09998:CDS |
| GGAGAATGGAGAGAGGTGAG+AGG | 0.540624 | 1.4:-72377177 | None:intergenic |
| AAAGACACAAAAGCAACTCT+TGG | 0.543465 | 1.4:-72378669 | None:intergenic |
| CCAAGGAAAAGGGTTGGAGG+TGG | 0.543991 | 1.4:-72377234 | None:intergenic |
| ATATCATTGGTAGAAGATAT+GGG | 0.547601 | 1.4:+72378346 | MS.gene09998:CDS |
| ATCAAATCTGTGACTAGGAA+AGG | 0.549956 | 1.4:+72377990 | MS.gene09998:CDS |
| CACAATGTTGGTGCCACTGT+TGG | 0.565061 | 1.4:+72377383 | MS.gene09998:CDS |
| TAATATCCCAACATAATAGA+GGG | 0.574859 | 1.4:-72378131 | None:intergenic |
| TTAGATCTTGAGCATTTGCA+GGG | 0.579429 | 1.4:-72377358 | None:intergenic |
| CGACCACCTCAGTAATGGGT+AGG | 0.581372 | 1.4:-72378713 | None:intergenic |
| CCCTACAGAGAATTGCTAAG+AGG | 0.586996 | 1.4:+72378106 | MS.gene09998:intron |
| GTCACTGCCATAGTTACTAG+TGG | 0.589305 | 1.4:-72378753 | None:intergenic |
| GTTGCATTGGCAATGATGTG+TGG | 0.589491 | 1.4:+72378199 | MS.gene09998:CDS |
| CAAGATCTAATCCACAATGT+TGG | 0.596614 | 1.4:+72377371 | MS.gene09998:CDS |
| CAACAGTGGCACCAACATTG+TGG | 0.602793 | 1.4:-72377382 | None:intergenic |
| GTCCCTACCCATTACTGAGG+TGG | 0.610171 | 1.4:+72378710 | MS.gene09998:CDS |
| CATTGGCAATGATGTGTGGA+GGG | 0.615220 | 1.4:+72378203 | MS.gene09998:CDS |
| GACTCATCAAATCTGTGACT+AGG | 0.615495 | 1.4:+72377985 | MS.gene09998:CDS |
| GACCACCTCAGTAATGGGTA+GGG | 0.617402 | 1.4:-72378712 | None:intergenic |
| GCCGCCAAGAACACCAACAG+TGG | 0.621865 | 1.4:-72377396 | None:intergenic |
| CGGACACTACGATGTACTGA+AGG | 0.643227 | 1.4:-72377302 | None:intergenic |
| GCATTGGCAATGATGTGTGG+AGG | 0.648439 | 1.4:+72378202 | MS.gene09998:CDS |
| CTGGCGTGAATCTCCAATTG+GGG | 0.652571 | 1.4:+72378174 | MS.gene09998:CDS |
| GGAGTCCCTACCCATTACTG+AGG | 0.664036 | 1.4:+72378707 | MS.gene09998:CDS |
| GAGTCCTTGATCAGTAACCA+AGG | 0.675558 | 1.4:-72377967 | None:intergenic |
| GCACGGAGGAGAATGGAGAG+AGG | 0.679387 | 1.4:-72377184 | None:intergenic |
| CGGTGAACGGCGGTGCACGG+AGG | 0.687859 | 1.4:-72377198 | None:intergenic |
| ATTGGCAATGATGTGTGGAG+GGG | 0.694210 | 1.4:+72378204 | MS.gene09998:CDS |
| TGGTTGTTGCCGGTGAACGG+CGG | 0.696223 | 1.4:-72377208 | None:intergenic |
| AATATCCCAACATAATAGAG+GGG | 0.697645 | 1.4:-72378130 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGTCTTTATTCATTTTTT+TGG | + | chr1.4:72378032-72378051 | MS.gene09998:intron | 15.0% |
| !!! | TTTGGTTCAATTTAAATTTT+GGG | + | chr1.4:72377597-72377616 | MS.gene09998:intron | 15.0% |
| !!! | TTTTGGTTCAATTTAAATTT+TGG | + | chr1.4:72377596-72377615 | MS.gene09998:intron | 15.0% |
| !! | ATTTATCTAAATCACAGAAA+TGG | - | chr1.4:72377769-72377788 | None:intergenic | 20.0% |
| !! | TTAATCAACATTGAATTTGA+TGG | + | chr1.4:72378307-72378326 | MS.gene09998:intron | 20.0% |
| !! | TTACAAATCTTTCATCTAAA+CGG | - | chr1.4:72377325-72377344 | None:intergenic | 20.0% |
| !! | TTTATCTAAATCACAGAAAT+GGG | - | chr1.4:72377768-72377787 | None:intergenic | 20.0% |
| !!! | GTCAATTCATAAATTTTTCT+TGG | - | chr1.4:72377556-72377575 | None:intergenic | 20.0% |
| !!! | TTCATTTTTTTGGCATTATT+TGG | + | chr1.4:72378042-72378061 | MS.gene09998:intron | 20.0% |
| ! | AAAAAAATTGCAAAGCTTCT+AGG | - | chr1.4:72378289-72378308 | None:intergenic | 25.0% |
| ! | AAAAAATTGCAAAGCTTCTA+GGG | - | chr1.4:72378288-72378307 | None:intergenic | 25.0% |
| ! | AAACATCATTGATCAAGTAA+TGG | + | chr1.4:72377460-72377479 | MS.gene09998:intron | 25.0% |
| ! | AAAGCAATCCTGATAATATA+TGG | - | chr1.4:72377716-72377735 | None:intergenic | 25.0% |
| ! | AAGACATTTGATACTTACTT+TGG | - | chr1.4:72378020-72378039 | None:intergenic | 25.0% |
| ! | AATGCTTATATTTGGATTCT+TGG | + | chr1.4:72378419-72378438 | MS.gene09998:CDS | 25.0% |
| ! | AGGAAAGGTTTAAGAAATAA+AGG | - | chr1.4:72378257-72378276 | None:intergenic | 25.0% |
| ! | ATATCATTGGTAGAAGATAT+GGG | + | chr1.4:72378346-72378365 | MS.gene09998:CDS | 25.0% |
| ! | GAACCAAAACAAGTAAAAAA+TGG | - | chr1.4:72377585-72377604 | None:intergenic | 25.0% |
| ! | TAATATCCCAACATAATAGA+GGG | - | chr1.4:72378134-72378153 | None:intergenic | 25.0% |
| ! | TATTTCTTAAACCTTTCCTA+GGG | + | chr1.4:72378258-72378277 | MS.gene09998:intron | 25.0% |
| ! | TTAATATCCCAACATAATAG+AGG | - | chr1.4:72378135-72378154 | None:intergenic | 25.0% |
| ! | TTACAACCAAAAAAAGAGTT+GGG | + | chr1.4:72378383-72378402 | MS.gene09998:CDS | 25.0% |
| ! | TTATCTAAATCACAGAAATG+GGG | - | chr1.4:72377767-72377786 | None:intergenic | 25.0% |
| ! | TTCCTTATAAGGAAAGTTTA+AGG | + | chr1.4:72377821-72377840 | MS.gene09998:intron | 25.0% |
| !! | TCTTTGCTTTATTCCTTATA+AGG | + | chr1.4:72377810-72377829 | MS.gene09998:intron | 25.0% |
| !! | TTATTTCTTAAACCTTTCCT+AGG | + | chr1.4:72378257-72378276 | MS.gene09998:intron | 25.0% |
| !!! | AATGTTTTGGTGTTAATGTT+AGG | + | chr1.4:72377863-72377882 | MS.gene09998:intron | 25.0% |
| !!! | ATTGCTTTGTTTGAATGTTT+TGG | + | chr1.4:72377850-72377869 | MS.gene09998:intron | 25.0% |
| !!! | GATCCATTTTTTACTTGTTT+TGG | + | chr1.4:72377579-72377598 | MS.gene09998:intron | 25.0% |
| AAACTGGTCCATATATTATC+AGG | + | chr1.4:72377705-72377724 | MS.gene09998:CDS | 30.0% | |
| AATATCCCAACATAATAGAG+GGG | - | chr1.4:72378133-72378152 | None:intergenic | 30.0% | |
| AGCATAGCAATGCTTATATT+TGG | + | chr1.4:72378411-72378430 | MS.gene09998:CDS | 30.0% | |
| AGTGTGAAAATCTATCTACT+TGG | - | chr1.4:72378564-72378583 | None:intergenic | 30.0% | |
| CTTACAACCAAAAAAAGAGT+TGG | + | chr1.4:72378382-72378401 | MS.gene09998:CDS | 30.0% | |
| GATATCATTGGTAGAAGATA+TGG | + | chr1.4:72378345-72378364 | MS.gene09998:CDS | 30.0% | |
| TCATTGATCAAGTAATGGTT+TGG | + | chr1.4:72377465-72377484 | MS.gene09998:intron | 30.0% | |
| TGCCTTAAACTTTCCTTATA+AGG | - | chr1.4:72377826-72377845 | None:intergenic | 30.0% | |
| TTGGATTCTTGGTTTCAATT+GGG | + | chr1.4:72378430-72378449 | MS.gene09998:CDS | 30.0% | |
| TTTGGATTCTTGGTTTCAAT+TGG | + | chr1.4:72378429-72378448 | MS.gene09998:CDS | 30.0% | |
| ! | ATAAGGAAAGTTTAAGGCAT+TGG | + | chr1.4:72377827-72377846 | MS.gene09998:intron | 30.0% |
| ! | CATTGAATTTGATGGTTACT+AGG | + | chr1.4:72378315-72378334 | MS.gene09998:intron | 30.0% |
| !! | AAAAAGTGCTGTTGAAAAAG+TGG | - | chr1.4:72378477-72378496 | None:intergenic | 30.0% |
| !! | TTTTTGGCATTATTTGGTCA+TGG | + | chr1.4:72378048-72378067 | MS.gene09998:intron | 30.0% |
| !!! | ATTATCAGGATTGCTTTTTC+TGG | + | chr1.4:72377719-72377738 | MS.gene09998:CDS | 30.0% |
| !!! | CAACTCTTTTTTTGGTTGTA+AGG | - | chr1.4:72378384-72378403 | None:intergenic | 30.0% |
| !!! | TGTGAATTTTTTGAGGCTTT+TGG | + | chr1.4:72377932-72377951 | MS.gene09998:CDS | 30.0% |
| !!! | TTCCTCTTGTGAATTTTTTG+AGG | + | chr1.4:72377925-72377944 | MS.gene09998:CDS | 30.0% |
| AAAGACACAAAAGCAACTCT+TGG | - | chr1.4:72378672-72378691 | None:intergenic | 35.0% | |
| AAATTTGTGTCACATGGTGA+TGG | + | chr1.4:72377667-72377686 | MS.gene09998:intron | 35.0% | |
| AGCCTCAAAAAATTCACAAG+AGG | - | chr1.4:72377930-72377949 | None:intergenic | 35.0% | |
| ATCAAATCTGTGACTAGGAA+AGG | + | chr1.4:72377990-72378009 | MS.gene09998:CDS | 35.0% | |
| ATTAGATCTTGAGCATTTGC+AGG | - | chr1.4:72377362-72377381 | None:intergenic | 35.0% | |
| CAAGATCTAATCCACAATGT+TGG | + | chr1.4:72377371-72377390 | MS.gene09998:CDS | 35.0% | |
| TGCATGCAAATTGCAAAGTA+AGG | - | chr1.4:72377517-72377536 | None:intergenic | 35.0% | |
| TGCTGATATTTATTGCATGC+AGG | + | chr1.4:72378589-72378608 | MS.gene09998:intron | 35.0% | |
| TTAGATCTTGAGCATTTGCA+GGG | - | chr1.4:72377361-72377380 | None:intergenic | 35.0% | |
| TTCTGTTCCACTAGTAACTA+TGG | + | chr1.4:72378746-72378765 | MS.gene09998:CDS | 35.0% | |
| ! | AATTTGATGGTTACTAGGTG+TGG | + | chr1.4:72378320-72378339 | MS.gene09998:intron | 35.0% |
| ! | TGTTAAGTGCTATTGTGTTC+TGG | + | chr1.4:72378155-72378174 | MS.gene09998:CDS | 35.0% |
| !! | GCTTTGAAATTTGTGTCACA+TGG | + | chr1.4:72377661-72377680 | MS.gene09998:intron | 35.0% |
| !!! | AGTTGCTTTTGTGTCTTTTG+TGG | + | chr1.4:72378674-72378693 | MS.gene09998:CDS | 35.0% |
| !!! | GATTGCTTTTTCTGGTTTCA+TGG | + | chr1.4:72377727-72377746 | MS.gene09998:CDS | 35.0% |
| !!! | TTTTTGAGGCTTTTGGTGAA+TGG | + | chr1.4:72377939-72377958 | MS.gene09998:CDS | 35.0% |
| AACCAAAAAAAGAGTTGGGC+TGG | + | chr1.4:72378387-72378406 | MS.gene09998:CDS | 40.0% | |
| ACCTCTTAGCAATTCTCTGT+AGG | - | chr1.4:72378110-72378129 | None:intergenic | 40.0% | |
| AGCAAAGTAACGAGCTTCAA+GGG | - | chr1.4:72377898-72377917 | None:intergenic | 40.0% | |
| CCTCTTAGCAATTCTCTGTA+GGG | - | chr1.4:72378109-72378128 | None:intergenic | 40.0% | |
| CTGTACTACTATTCAGCTCT+AGG | + | chr1.4:72378615-72378634 | MS.gene09998:CDS | 40.0% | |
| GACTCATCAAATCTGTGACT+AGG | + | chr1.4:72377985-72378004 | MS.gene09998:CDS | 40.0% | |
| TTTGTTCCAAGGAAAAGGGT+TGG | - | chr1.4:72377243-72377262 | None:intergenic | 40.0% | |
| ! | GAAATGGGGTACCTGAAAAT+TGG | - | chr1.4:72377753-72377772 | None:intergenic | 40.0% |
| ! | TGGGTTTGTTCCAAGGAAAA+GGG | - | chr1.4:72377247-72377266 | None:intergenic | 40.0% |
| ! | TGGTTTCATGGCCAATTTTC+AGG | + | chr1.4:72377739-72377758 | MS.gene09998:CDS | 40.0% |
| !! | ACAGTGTCGTTTGTTGTTGT+GGG | - | chr1.4:72377266-72377285 | None:intergenic | 40.0% |
| !! | GACATGTGCAGTTTGATTTG+TGG | + | chr1.4:72378637-72378656 | MS.gene09998:CDS | 40.0% |
| !!! | TACCAGCCCAACTCTTTTTT+TGG | - | chr1.4:72378392-72378411 | None:intergenic | 40.0% |
| AGAGGTCCCCTCTATTATGT+TGG | + | chr1.4:72378124-72378143 | MS.gene09998:CDS | 45.0% | |
| ATTGGCAATGATGTGTGGAG+GGG | + | chr1.4:72378204-72378223 | MS.gene09998:CDS | 45.0% | |
| CAGCAAAGTAACGAGCTTCA+AGG | - | chr1.4:72377899-72377918 | None:intergenic | 45.0% | |
| CATTGGCAATGATGTGTGGA+GGG | + | chr1.4:72378203-72378222 | MS.gene09998:CDS | 45.0% | |
| CCCTACAGAGAATTGCTAAG+AGG | + | chr1.4:72378106-72378125 | MS.gene09998:intron | 45.0% | |
| CTAGGTGTGGCTGATATCAT+TGG | + | chr1.4:72378333-72378352 | MS.gene09998:intron | 45.0% | |
| CTCTCCTTGGTTACTGATCA+AGG | + | chr1.4:72377963-72377982 | MS.gene09998:CDS | 45.0% | |
| GAGGTCCCCTCTATTATGTT+GGG | + | chr1.4:72378125-72378144 | MS.gene09998:CDS | 45.0% | |
| GAGTCCTTGATCAGTAACCA+AGG | - | chr1.4:72377970-72377989 | None:intergenic | 45.0% | |
| GTCACTGCCATAGTTACTAG+TGG | - | chr1.4:72378756-72378775 | None:intergenic | 45.0% | |
| TCATCGACCACCTCAGTAAT+GGG | - | chr1.4:72378720-72378739 | None:intergenic | 45.0% | |
| TCCAATTGGGGTTGTTGCAT+TGG | + | chr1.4:72378186-72378205 | MS.gene09998:CDS | 45.0% | |
| TCTGGCGTGAATCTCCAATT+GGG | + | chr1.4:72378173-72378192 | MS.gene09998:CDS | 45.0% | |
| TGGCATTATTTGGTCATGGC+AGG | + | chr1.4:72378052-72378071 | MS.gene09998:intron | 45.0% | |
| TTCTGGCGTGAATCTCCAAT+TGG | + | chr1.4:72378172-72378191 | MS.gene09998:CDS | 45.0% | |
| TTTGGTGAATGGTCTCTCCT+TGG | + | chr1.4:72377950-72377969 | MS.gene09998:CDS | 45.0% | |
| ! | GTGGGTTTGTTCCAAGGAAA+AGG | - | chr1.4:72377248-72377267 | None:intergenic | 45.0% |
| ! | GTTGCATTGGCAATGATGTG+TGG | + | chr1.4:72378199-72378218 | MS.gene09998:CDS | 45.0% |
| ! | GTTGTTGTGGGTTTGTTCCA+AGG | - | chr1.4:72377254-72377273 | None:intergenic | 45.0% |
| ! | TGTGTCTTTTGTGGCAACAG+TGG | + | chr1.4:72378683-72378702 | MS.gene09998:CDS | 45.0% |
| !! | GACAGTGTCGTTTGTTGTTG+TGG | - | chr1.4:72377267-72377286 | None:intergenic | 45.0% |
| !!! | GTTTATTTTTTATTTTTTAA+TGG | + | chr1.4:72377624-72377643 | MS.gene09998:intron | 5.0% |
| CAACAGTGGCACCAACATTG+TGG | - | chr1.4:72377385-72377404 | None:intergenic | 50.0% | |
| CGGACACTACGATGTACTGA+AGG | - | chr1.4:72377305-72377324 | None:intergenic | 50.0% | |
| CTGGCGTGAATCTCCAATTG+GGG | + | chr1.4:72378174-72378193 | MS.gene09998:CDS | 50.0% | |
| GCCAATGCAACAACCCCAAT+TGG | - | chr1.4:72378190-72378209 | None:intergenic | 50.0% | |
| GTCATCGACCACCTCAGTAA+TGG | - | chr1.4:72378721-72378740 | None:intergenic | 50.0% | |
| GTTCCAAGGAAAAGGGTTGG+AGG | - | chr1.4:72377240-72377259 | None:intergenic | 50.0% | |
| TCTAGGGAAAGCCCTAGGAA+AGG | - | chr1.4:72378272-72378291 | None:intergenic | 50.0% | |
| ! | AAGCTTCTAGGGAAAGCCCT+AGG | - | chr1.4:72378277-72378296 | None:intergenic | 50.0% |
| ! | GCATTGGCAATGATGTGTGG+AGG | + | chr1.4:72378202-72378221 | MS.gene09998:CDS | 50.0% |
| ! | GTCTTTTGTGGCAACAGTGG+TGG | + | chr1.4:72378686-72378705 | MS.gene09998:CDS | 50.0% |
| !! | CACAATGTTGGTGCCACTGT+TGG | + | chr1.4:72377383-72377402 | MS.gene09998:CDS | 50.0% |
| !! | GACCACCTCAGTAATGGGTA+GGG | - | chr1.4:72378715-72378734 | None:intergenic | 50.0% |
| !! | TGTGTCACATGGTGATGGCA+GGG | + | chr1.4:72377672-72377691 | MS.gene09998:intron | 50.0% |
| !! | TTGTGTCACATGGTGATGGC+AGG | + | chr1.4:72377671-72377690 | MS.gene09998:intron | 50.0% |
| AGGAAAAGGGTTGGAGGTGG+TGG | - | chr1.4:72377234-72377253 | None:intergenic | 55.0% | |
| CCAAGGAAAAGGGTTGGAGG+TGG | - | chr1.4:72377237-72377256 | None:intergenic | 55.0% | |
| GCAATGATGTGTGGAGGGGA+TGG | + | chr1.4:72378208-72378227 | MS.gene09998:CDS | 55.0% | |
| GCAGGGTCTGAGCAGAAAAC+TGG | + | chr1.4:72377689-72377708 | MS.gene09998:intron | 55.0% | |
| GGAGAATGGAGAGAGGTGAG+AGG | - | chr1.4:72377180-72377199 | None:intergenic | 55.0% | |
| GGAGTCCCTACCCATTACTG+AGG | + | chr1.4:72378707-72378726 | MS.gene09998:CDS | 55.0% | |
| GTCCCTACCCATTACTGAGG+TGG | + | chr1.4:72378710-72378729 | MS.gene09998:CDS | 55.0% | |
| TGGTGGTTGTTGCCGGTGAA+CGG | - | chr1.4:72377214-72377233 | None:intergenic | 55.0% | |
| ! | AAAAGGGTTGGAGGTGGTGG+TGG | - | chr1.4:72377231-72377250 | None:intergenic | 55.0% |
| ! | CCACCTCCAACCCTTTTCCT+TGG | + | chr1.4:72377234-72377253 | MS.gene09998:CDS | 55.0% |
| ! | GCCACTGTTGGTGTTCTTGG+CGG | + | chr1.4:72377395-72377414 | MS.gene09998:CDS | 55.0% |
| !! | CGACCACCTCAGTAATGGGT+AGG | - | chr1.4:72378716-72378735 | None:intergenic | 55.0% |
| !! | GGTGCCACTGTTGGTGTTCT+TGG | + | chr1.4:72377392-72377411 | MS.gene09998:CDS | 55.0% |
| GCACGGAGGAGAATGGAGAG+AGG | - | chr1.4:72377187-72377206 | None:intergenic | 60.0% | |
| GCCGCCAAGAACACCAACAG+TGG | - | chr1.4:72377399-72377418 | None:intergenic | 60.0% | |
| TGGTTGTTGCCGGTGAACGG+CGG | - | chr1.4:72377211-72377230 | None:intergenic | 60.0% | |
| !! | GAGGTGGTGGTGGTTGTTGC+CGG | - | chr1.4:72377221-72377240 | None:intergenic | 60.0% |
| CGGCGGTGCACGGAGGAGAA+TGG | - | chr1.4:72377194-72377213 | None:intergenic | 70.0% | |
| CTCCGTGCACCGCCGTTCAC+CGG | + | chr1.4:72377199-72377218 | MS.gene09998:CDS | 70.0% | |
| TGCCGGTGAACGGCGGTGCA+CGG | - | chr1.4:72377204-72377223 | None:intergenic | 70.0% | |
| CGGTGAACGGCGGTGCACGG+AGG | - | chr1.4:72377201-72377220 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 72377164 | 72378797 | 72377164 | ID=MS.gene09998 |
| chr1.4 | mRNA | 72377164 | 72378797 | 72377164 | ID=MS.gene09998.t1;Parent=MS.gene09998 |
| chr1.4 | exon | 72377164 | 72377475 | 72377164 | ID=MS.gene09998.t1.exon1;Parent=MS.gene09998.t1 |
| chr1.4 | CDS | 72377164 | 72377475 | 72377164 | ID=cds.MS.gene09998.t1;Parent=MS.gene09998.t1 |
| chr1.4 | exon | 72377693 | 72377760 | 72377693 | ID=MS.gene09998.t1.exon2;Parent=MS.gene09998.t1 |
| chr1.4 | CDS | 72377693 | 72377760 | 72377693 | ID=cds.MS.gene09998.t1;Parent=MS.gene09998.t1 |
| chr1.4 | exon | 72377890 | 72378021 | 72377890 | ID=MS.gene09998.t1.exon3;Parent=MS.gene09998.t1 |
| chr1.4 | CDS | 72377890 | 72378021 | 72377890 | ID=cds.MS.gene09998.t1;Parent=MS.gene09998.t1 |
| chr1.4 | exon | 72378114 | 72378229 | 72378114 | ID=MS.gene09998.t1.exon4;Parent=MS.gene09998.t1 |
| chr1.4 | CDS | 72378114 | 72378229 | 72378114 | ID=cds.MS.gene09998.t1;Parent=MS.gene09998.t1 |
| chr1.4 | exon | 72378337 | 72378451 | 72378337 | ID=MS.gene09998.t1.exon5;Parent=MS.gene09998.t1 |
| chr1.4 | CDS | 72378337 | 72378451 | 72378337 | ID=cds.MS.gene09998.t1;Parent=MS.gene09998.t1 |
| chr1.4 | exon | 72378611 | 72378797 | 72378611 | ID=MS.gene09998.t1.exon6;Parent=MS.gene09998.t1 |
| chr1.4 | CDS | 72378611 | 72378797 | 72378611 | ID=cds.MS.gene09998.t1;Parent=MS.gene09998.t1 |
| Gene Sequence |
| Protein sequence |
