Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33177.t1 | XP_013465806.1 | 97.5 | 709 | 17 | 1 | 1 | 709 | 1 | 708 | 0.00E+00 | 1265.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33177.t1 | F4IRM4 | 56.4 | 741 | 286 | 9 | 1 | 707 | 1 | 738 | 2.8e-219 | 763.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33177.t1 | A0A072VDJ0 | 97.5 | 709 | 17 | 1 | 1 | 709 | 1 | 708 | 0.0e+00 | 1265.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene33177 | 0.802337 | 5.89E-49 | -1.69E-46 |
| MS.gene04915 | MS.gene33177 | 0.813331 | 2.70E-51 | -1.69E-46 |
| MS.gene04917 | MS.gene33177 | 0.816356 | 5.77E-52 | -1.69E-46 |
| MS.gene049254 | MS.gene33177 | 0.802136 | 6.47E-49 | -1.69E-46 |
| MS.gene049283 | MS.gene33177 | 0.825404 | 4.78E-54 | -1.69E-46 |
| MS.gene049368 | MS.gene33177 | 0.814521 | 1.48E-51 | -1.69E-46 |
| MS.gene049419 | MS.gene33177 | -0.812283 | 4.58E-51 | -1.69E-46 |
| MS.gene049452 | MS.gene33177 | 0.830499 | 2.84E-55 | -1.69E-46 |
| MS.gene049499 | MS.gene33177 | 0.813953 | 1.97E-51 | -1.69E-46 |
| MS.gene049983 | MS.gene33177 | 0.863538 | 2.32E-64 | -1.69E-46 |
| MS.gene050300 | MS.gene33177 | -0.809726 | 1.64E-50 | -1.69E-46 |
| MS.gene050359 | MS.gene33177 | 0.80837 | 3.20E-50 | -1.69E-46 |
| MS.gene050414 | MS.gene33177 | 0.834879 | 2.32E-56 | -1.69E-46 |
| MS.gene050556 | MS.gene33177 | 0.80155 | 8.54E-49 | -1.69E-46 |
| MS.gene050646 | MS.gene33177 | 0.800191 | 1.62E-48 | -1.69E-46 |
| MS.gene050654 | MS.gene33177 | 0.885129 | 1.06E-71 | -1.69E-46 |
| MS.gene050737 | MS.gene33177 | 0.852411 | 4.70E-61 | -1.69E-46 |
| MS.gene050759 | MS.gene33177 | 0.841273 | 5.25E-58 | -1.69E-46 |
| MS.gene050826 | MS.gene33177 | 0.8129 | 3.36E-51 | -1.69E-46 |
| MS.gene050941 | MS.gene33177 | 0.881024 | 3.38E-70 | -1.69E-46 |
| MS.gene050962 | MS.gene33177 | 0.827618 | 1.42E-54 | -1.69E-46 |
| MS.gene051122 | MS.gene33177 | 0.817515 | 3.17E-52 | -1.69E-46 |
| MS.gene051184 | MS.gene33177 | 0.826816 | 2.20E-54 | -1.69E-46 |
| MS.gene051490 | MS.gene33177 | 0.821867 | 3.21E-53 | -1.69E-46 |
| MS.gene051541 | MS.gene33177 | 0.861717 | 8.43E-64 | -1.69E-46 |
| MS.gene051800 | MS.gene33177 | 0.813697 | 2.24E-51 | -1.69E-46 |
| MS.gene051831 | MS.gene33177 | 0.801033 | 1.09E-48 | -1.69E-46 |
| MS.gene051848 | MS.gene33177 | -0.809775 | 1.60E-50 | -1.69E-46 |
| MS.gene051852 | MS.gene33177 | 0.819286 | 1.26E-52 | -1.69E-46 |
| MS.gene052016 | MS.gene33177 | 0.839866 | 1.23E-57 | -1.69E-46 |
| MS.gene052052 | MS.gene33177 | 0.821193 | 4.60E-53 | -1.69E-46 |
| MS.gene052118 | MS.gene33177 | 0.824641 | 7.23E-54 | -1.69E-46 |
| MS.gene05216 | MS.gene33177 | 0.800238 | 1.58E-48 | -1.69E-46 |
| MS.gene052307 | MS.gene33177 | 0.805444 | 1.33E-49 | -1.69E-46 |
| MS.gene052342 | MS.gene33177 | 0.811738 | 6.03E-51 | -1.69E-46 |
| MS.gene052463 | MS.gene33177 | 0.857121 | 2.02E-62 | -1.69E-46 |
| MS.gene052464 | MS.gene33177 | 0.805628 | 1.22E-49 | -1.69E-46 |
| MS.gene052493 | MS.gene33177 | 0.857749 | 1.32E-62 | -1.69E-46 |
| MS.gene052518 | MS.gene33177 | 0.818181 | 2.24E-52 | -1.69E-46 |
| MS.gene052534 | MS.gene33177 | 0.804347 | 2.26E-49 | -1.69E-46 |
| MS.gene052674 | MS.gene33177 | 0.870193 | 1.76E-66 | -1.69E-46 |
| MS.gene052675 | MS.gene33177 | 0.868858 | 4.78E-66 | -1.69E-46 |
| MS.gene052677 | MS.gene33177 | 0.865388 | 6.12E-65 | -1.69E-46 |
| MS.gene053079 | MS.gene33177 | 0.804025 | 2.63E-49 | -1.69E-46 |
| MS.gene053298 | MS.gene33177 | 0.800611 | 1.33E-48 | -1.69E-46 |
| MS.gene053456 | MS.gene33177 | 0.808357 | 3.22E-50 | -1.69E-46 |
| MS.gene05350 | MS.gene33177 | 0.835243 | 1.88E-56 | -1.69E-46 |
| MS.gene053726 | MS.gene33177 | 0.851987 | 6.20E-61 | -1.69E-46 |
| MS.gene054178 | MS.gene33177 | 0.804529 | 2.07E-49 | -1.69E-46 |
| MS.gene05423 | MS.gene33177 | 0.800834 | 1.20E-48 | -1.69E-46 |
| MS.gene054479 | MS.gene33177 | 0.875993 | 1.99E-68 | -1.69E-46 |
| MS.gene054489 | MS.gene33177 | 0.811119 | 8.21E-51 | -1.69E-46 |
| MS.gene054641 | MS.gene33177 | 0.842273 | 2.86E-58 | -1.69E-46 |
| MS.gene054772 | MS.gene33177 | 0.807522 | 4.85E-50 | -1.69E-46 |
| MS.gene054892 | MS.gene33177 | 0.865102 | 7.53E-65 | -1.69E-46 |
| MS.gene054893 | MS.gene33177 | 0.872665 | 2.67E-67 | -1.69E-46 |
| MS.gene055327 | MS.gene33177 | 0.839337 | 1.68E-57 | -1.69E-46 |
| MS.gene055513 | MS.gene33177 | 0.832553 | 8.85E-56 | -1.69E-46 |
| MS.gene05552 | MS.gene33177 | 0.805526 | 1.28E-49 | -1.69E-46 |
| MS.gene055864 | MS.gene33177 | 0.86997 | 2.08E-66 | -1.69E-46 |
| MS.gene055926 | MS.gene33177 | 0.821973 | 3.04E-53 | -1.69E-46 |
| MS.gene056045 | MS.gene33177 | 0.812517 | 4.07E-51 | -1.69E-46 |
| MS.gene056174 | MS.gene33177 | 0.828493 | 8.72E-55 | -1.69E-46 |
| MS.gene056390 | MS.gene33177 | 0.805193 | 1.50E-49 | -1.69E-46 |
| MS.gene056480 | MS.gene33177 | 0.836121 | 1.13E-56 | -1.69E-46 |
| MS.gene056699 | MS.gene33177 | 0.809192 | 2.14E-50 | -1.69E-46 |
| MS.gene056776 | MS.gene33177 | 0.814278 | 1.67E-51 | -1.69E-46 |
| MS.gene056779 | MS.gene33177 | 0.838947 | 2.12E-57 | -1.69E-46 |
| MS.gene056831 | MS.gene33177 | 0.831847 | 1.32E-55 | -1.69E-46 |
| MS.gene057155 | MS.gene33177 | 0.816073 | 6.67E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene33177 | 0.803853 | 2.86E-49 | -1.69E-46 |
| MS.gene057919 | MS.gene33177 | 0.80238 | 5.77E-49 | -1.69E-46 |
| MS.gene058081 | MS.gene33177 | 0.842645 | 2.28E-58 | -1.69E-46 |
| MS.gene058095 | MS.gene33177 | 0.800608 | 1.33E-48 | -1.69E-46 |
| MS.gene058159 | MS.gene33177 | 0.824071 | 9.84E-54 | -1.69E-46 |
| MS.gene058223 | MS.gene33177 | -0.840154 | 1.03E-57 | -1.69E-46 |
| MS.gene058278 | MS.gene33177 | 0.820959 | 5.21E-53 | -1.69E-46 |
| MS.gene058289 | MS.gene33177 | 0.803428 | 3.50E-49 | -1.69E-46 |
| MS.gene058429 | MS.gene33177 | 0.891107 | 5.37E-74 | -1.69E-46 |
| MS.gene058708 | MS.gene33177 | -0.803795 | 2.94E-49 | -1.69E-46 |
| MS.gene058758 | MS.gene33177 | 0.812949 | 3.28E-51 | -1.69E-46 |
| MS.gene059170 | MS.gene33177 | 0.841945 | 3.49E-58 | -1.69E-46 |
| MS.gene059283 | MS.gene33177 | 0.864152 | 1.49E-64 | -1.69E-46 |
| MS.gene059439 | MS.gene33177 | 0.810881 | 9.24E-51 | -1.69E-46 |
| MS.gene05952 | MS.gene33177 | 0.81483 | 1.26E-51 | -1.69E-46 |
| MS.gene059774 | MS.gene33177 | 0.800506 | 1.40E-48 | -1.69E-46 |
| MS.gene059965 | MS.gene33177 | 0.80388 | 2.82E-49 | -1.69E-46 |
| MS.gene060122 | MS.gene33177 | -0.816122 | 6.51E-52 | -1.69E-46 |
| MS.gene060259 | MS.gene33177 | 0.846479 | 2.12E-59 | -1.69E-46 |
| MS.gene060373 | MS.gene33177 | 0.801458 | 8.92E-49 | -1.69E-46 |
| MS.gene060435 | MS.gene33177 | 0.833871 | 4.16E-56 | -1.69E-46 |
| MS.gene060520 | MS.gene33177 | 0.800195 | 1.62E-48 | -1.69E-46 |
| MS.gene06052 | MS.gene33177 | 0.879936 | 8.29E-70 | -1.69E-46 |
| MS.gene060777 | MS.gene33177 | 0.850955 | 1.22E-60 | -1.69E-46 |
| MS.gene060850 | MS.gene33177 | 0.858072 | 1.06E-62 | -1.69E-46 |
| MS.gene060851 | MS.gene33177 | 0.858092 | 1.04E-62 | -1.69E-46 |
| MS.gene060852 | MS.gene33177 | 0.856456 | 3.18E-62 | -1.69E-46 |
| MS.gene060932 | MS.gene33177 | 0.978592 | 3.79E-146 | -1.69E-46 |
| MS.gene060937 | MS.gene33177 | 0.807722 | 4.40E-50 | -1.69E-46 |
| MS.gene061100 | MS.gene33177 | 0.830041 | 3.67E-55 | -1.69E-46 |
| MS.gene06121 | MS.gene33177 | 0.868249 | 7.51E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene33177 | MS.gene68933 | PPI |
| MS.gene33177 | MS.gene042139 | PPI |
| MS.gene33177 | MS.gene012678 | PPI |
| MS.gene33177 | MS.gene68877 | PPI |
| MS.gene68959 | MS.gene33177 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33177.t1 | MTR_1g012840 | 97.038 | 709 | 20 | 1 | 1 | 709 | 1 | 708 | 0.0 | 1426 |
| MS.gene33177.t1 | MTR_4g132780 | 36.133 | 750 | 377 | 13 | 1 | 659 | 1 | 739 | 2.12e-144 | 441 |
| MS.gene33177.t1 | MTR_2g025130 | 37.642 | 441 | 196 | 10 | 251 | 662 | 50 | 440 | 9.47e-89 | 286 |
| MS.gene33177.t1 | MTR_2g451540 | 57.377 | 183 | 73 | 3 | 6 | 185 | 2 | 182 | 1.82e-60 | 216 |
| MS.gene33177.t1 | MTR_7g059150 | 31.646 | 158 | 93 | 5 | 7 | 152 | 52 | 206 | 6.26e-16 | 79.0 |
| MS.gene33177.t1 | MTR_2g090135 | 33.913 | 115 | 70 | 4 | 41 | 152 | 98 | 209 | 7.35e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33177.t1 | AT2G25290 | 58.681 | 743 | 266 | 14 | 1 | 707 | 1 | 738 | 0.0 | 833 |
| MS.gene33177.t1 | AT2G25290 | 58.681 | 743 | 266 | 14 | 1 | 707 | 1 | 738 | 0.0 | 833 |
| MS.gene33177.t1 | AT2G25290 | 58.681 | 743 | 266 | 14 | 1 | 707 | 1 | 738 | 0.0 | 833 |
| MS.gene33177.t1 | AT2G25290 | 58.681 | 743 | 266 | 14 | 1 | 707 | 1 | 738 | 0.0 | 833 |
| MS.gene33177.t1 | AT4G32070 | 55.357 | 784 | 264 | 18 | 1 | 707 | 1 | 775 | 0.0 | 808 |
| MS.gene33177.t1 | AT4G32070 | 55.357 | 784 | 264 | 18 | 1 | 707 | 1 | 775 | 0.0 | 808 |
| MS.gene33177.t1 | AT5G20360 | 39.478 | 689 | 386 | 13 | 38 | 705 | 33 | 711 | 7.81e-163 | 486 |
| MS.gene33177.t1 | AT5G20360 | 39.478 | 689 | 386 | 13 | 38 | 705 | 33 | 711 | 7.81e-163 | 486 |
| MS.gene33177.t1 | AT5G20360 | 39.478 | 689 | 386 | 13 | 38 | 705 | 63 | 741 | 1.69e-162 | 486 |
| MS.gene33177.t1 | AT5G20360 | 39.478 | 689 | 386 | 13 | 38 | 705 | 63 | 741 | 1.69e-162 | 486 |
| MS.gene33177.t1 | AT5G20360 | 39.478 | 689 | 386 | 13 | 38 | 705 | 113 | 791 | 1.11e-161 | 486 |
| MS.gene33177.t1 | AT5G20360 | 39.478 | 689 | 386 | 13 | 38 | 705 | 123 | 801 | 2.00e-161 | 486 |
| MS.gene33177.t1 | AT5G20360 | 39.478 | 689 | 386 | 13 | 38 | 705 | 123 | 801 | 2.00e-161 | 486 |
| MS.gene33177.t1 | AT1G62390 | 37.464 | 702 | 366 | 10 | 31 | 662 | 41 | 739 | 3.20e-145 | 442 |
| MS.gene33177.t1 | AT3G58620 | 36.885 | 122 | 70 | 3 | 45 | 166 | 453 | 567 | 3.95e-12 | 70.1 |
| MS.gene33177.t1 | AT3G58620 | 36.885 | 122 | 70 | 3 | 45 | 166 | 453 | 567 | 4.98e-12 | 69.7 |
| MS.gene33177.t1 | AT4G30480 | 34.532 | 139 | 78 | 4 | 41 | 169 | 105 | 240 | 1.20e-11 | 66.6 |
Find 185 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTTTGGCTTTGTTTAAT+TGG | 0.077180 | 1.2:+8804979 | MS.gene33177:CDS |
| TGCTTTGGCTTTGTTTAATT+GGG | 0.159575 | 1.2:+8804980 | MS.gene33177:CDS |
| TAATGCACAGTTAGAGAAAA+TGG | 0.163980 | 1.2:+8805382 | MS.gene33177:CDS |
| TTCTTGTTGTTGTTTGATTT+TGG | 0.181726 | 1.2:-8803703 | None:intergenic |
| GGCGTTGAATCGGTTGGATT+TGG | 0.260217 | 1.2:+8804044 | MS.gene33177:CDS |
| GGATAGGTATCCGGGGTTAA+AGG | 0.285842 | 1.2:+8804539 | MS.gene33177:CDS |
| CGCGGTTTAGGAAAGTTGTT+AGG | 0.290109 | 1.2:+8804226 | MS.gene33177:CDS |
| ACAATAAGGTGCCCCATAAA+AGG | 0.298701 | 1.2:-8805481 | None:intergenic |
| GCAGAGGACAGCATGGAAAA+AGG | 0.303320 | 1.2:+8805296 | MS.gene33177:CDS |
| GTATATTACGCAGGTGGATT+TGG | 0.326290 | 1.2:+8804668 | MS.gene33177:CDS |
| GTTTGATTCTGATTCGTATC+TGG | 0.333235 | 1.2:+8804845 | MS.gene33177:CDS |
| ATAAGGGTGTTGGGGCTAAT+AGG | 0.333240 | 1.2:+8804763 | MS.gene33177:CDS |
| TACGCAGGTGGATTTGGATA+TGG | 0.341945 | 1.2:+8804674 | MS.gene33177:CDS |
| GTGAGGTGAGAGGGGAGAAT+GGG | 0.343540 | 1.2:+8804727 | MS.gene33177:CDS |
| GGGGAATGTTCACTTGTCTA+AGG | 0.350249 | 1.2:+8805001 | MS.gene33177:CDS |
| TGATAGTTTGAGGATTACTA+TGG | 0.351621 | 1.2:+8804131 | MS.gene33177:CDS |
| TAAGGATAGGGAAGGTGATT+TGG | 0.357323 | 1.2:+8804578 | MS.gene33177:CDS |
| AGCCGCCTGCTGCGCGGTTT+AGG | 0.357668 | 1.2:+8804214 | MS.gene33177:CDS |
| GTTTCAAGAGATGGCTGCTT+TGG | 0.361028 | 1.2:+8804965 | MS.gene33177:CDS |
| TACGAGGGTCTCCTAGCTCT+TGG | 0.363815 | 1.2:+8805167 | MS.gene33177:CDS |
| TCCAACGCAGTTGAATTATT+CGG | 0.366515 | 1.2:-8804102 | None:intergenic |
| TATTAGATGGGCGCAGTTGC+CGG | 0.370574 | 1.2:+8804479 | MS.gene33177:CDS |
| GGGTGTTCTTGTGAAGTATA+AGG | 0.372992 | 1.2:+8804560 | MS.gene33177:CDS |
| GAAGGATAAGGTTACGGATA+AGG | 0.374145 | 1.2:+8804383 | MS.gene33177:CDS |
| ACCAACATGGGAGGAATGTT+TGG | 0.374580 | 1.2:+8805538 | MS.gene33177:CDS |
| GGCCATGTGTTATATGCAAT+TGG | 0.379545 | 1.2:+8803921 | MS.gene33177:CDS |
| AAGAAGAAGAAAGGGCATAA+AGG | 0.384960 | 1.2:+8804261 | MS.gene33177:CDS |
| AGGACTGTGAAGTTGATATA+TGG | 0.388536 | 1.2:+8804450 | MS.gene33177:CDS |
| GGATAGTAACGAAGTTGTTA+AGG | 0.389904 | 1.2:+8804410 | MS.gene33177:CDS |
| GGCTGTTTAAGAACCATGTT+GGG | 0.393596 | 1.2:+8804823 | MS.gene33177:CDS |
| TATATGGAGAGGATATTAGA+TGG | 0.397585 | 1.2:+8804466 | MS.gene33177:CDS |
| ATGGGCTACGAAGGAGTATA+AGG | 0.401726 | 1.2:+8805097 | MS.gene33177:CDS |
| AAGATTAATAAGAAGAAGAA+AGG | 0.408833 | 1.2:+8804252 | MS.gene33177:CDS |
| GGGTGAAGATTTGAAGGATA+AGG | 0.409828 | 1.2:+8804371 | MS.gene33177:CDS |
| GAGAAGGAGATAAGGGTGTT+GGG | 0.411879 | 1.2:+8804754 | MS.gene33177:CDS |
| TGAGTAGTGGTGAGGTGAGA+GGG | 0.413021 | 1.2:+8804718 | MS.gene33177:CDS |
| AACAGAACGCTCATACAATA+AGG | 0.415328 | 1.2:-8805495 | None:intergenic |
| GGTGAGGTGAGAGGGGAGAA+TGG | 0.419918 | 1.2:+8804726 | MS.gene33177:CDS |
| GTGAGAGGGGAGAATGGGGT+TGG | 0.422494 | 1.2:+8804732 | MS.gene33177:CDS |
| ATTGAGGAACAGCGTTTGAA+TGG | 0.424825 | 1.2:+8805338 | MS.gene33177:CDS |
| GGGGAGAATGGGGTTGGAGA+AGG | 0.425637 | 1.2:+8804738 | MS.gene33177:CDS |
| AAATGTTAATGTTAATGTTA+AGG | 0.428883 | 1.2:+8804344 | MS.gene33177:CDS |
| TGGAGATTCTTGATAGTTTG+AGG | 0.428936 | 1.2:+8804121 | MS.gene33177:CDS |
| AGCTGCAGAACCTCCTCAAA+AGG | 0.429826 | 1.2:-8805263 | None:intergenic |
| TGACGAGACTGAGATTGCTT+TGG | 0.437155 | 1.2:+8804173 | MS.gene33177:CDS |
| GGTGAAGGGTGAAGATTTGA+AGG | 0.440373 | 1.2:+8804365 | MS.gene33177:CDS |
| TGTGATAAGGGATAGGTATC+CGG | 0.440872 | 1.2:+8804530 | MS.gene33177:CDS |
| AAAATTGTTCCAGGATGTAA+TGG | 0.443210 | 1.2:-8805870 | None:intergenic |
| CTCGACCCGTCTTCCTGAAA+AGG | 0.446613 | 1.2:-8805038 | None:intergenic |
| ATCTGGATATTCATGAGGTT+GGG | 0.451158 | 1.2:+8804862 | MS.gene33177:CDS |
| GGTTGGGATGAAGATATATT+CGG | 0.451414 | 1.2:+8804878 | MS.gene33177:CDS |
| TGGGGTTGGAGAAGGAGATA+AGG | 0.452188 | 1.2:+8804746 | MS.gene33177:CDS |
| TGTTATATGCAATTGGGTCT+TGG | 0.453077 | 1.2:+8803928 | MS.gene33177:CDS |
| GTGATAAGGGATAGGTATCC+GGG | 0.453408 | 1.2:+8804531 | MS.gene33177:CDS |
| AGGATTACTATGGAGGAGAA+AGG | 0.457524 | 1.2:+8804141 | MS.gene33177:CDS |
| AACATTAACATTTCCAACAT+TGG | 0.459292 | 1.2:-8804334 | None:intergenic |
| AACAATAAGAATATCGAAGT+TGG | 0.461398 | 1.2:+8805239 | MS.gene33177:CDS |
| ACGAGGGTCTCCTAGCTCTT+GGG | 0.466544 | 1.2:+8805168 | MS.gene33177:CDS |
| GCTGAGGGTTGTCATGTGCT+TGG | 0.466822 | 1.2:+8804633 | MS.gene33177:CDS |
| GCTTTGGCTTTGTTTAATTG+GGG | 0.471043 | 1.2:+8804981 | MS.gene33177:CDS |
| TATCTGGATATTCATGAGGT+TGG | 0.472474 | 1.2:+8804861 | MS.gene33177:CDS |
| GTTGGTGAGAGATGTGATAA+GGG | 0.473972 | 1.2:+8804518 | MS.gene33177:CDS |
| TTCTGAAGAAGCTGAAGACC+AGG | 0.474811 | 1.2:+8805433 | MS.gene33177:CDS |
| GTCATGTGCTTGGTTCGATC+CGG | 0.477175 | 1.2:+8804643 | MS.gene33177:CDS |
| GATAGGTATCCGGGGTTAAA+GGG | 0.478058 | 1.2:+8804540 | MS.gene33177:CDS |
| AGATTAATAAGAAGAAGAAA+GGG | 0.479602 | 1.2:+8804253 | MS.gene33177:CDS |
| AGATTTGAAGGATAAGGTTA+CGG | 0.481786 | 1.2:+8804377 | MS.gene33177:CDS |
| AGATCGATGGGGAAACCAGC+TGG | 0.483060 | 1.2:+8803658 | None:intergenic |
| GGGGTTGGAGAAGGAGATAA+GGG | 0.485908 | 1.2:+8804747 | MS.gene33177:CDS |
| AATGCACAGTTAGAGAAAAT+GGG | 0.486916 | 1.2:+8805383 | MS.gene33177:CDS |
| GGAGAAGGAGATAAGGGTGT+TGG | 0.487702 | 1.2:+8804753 | MS.gene33177:CDS |
| TTGAGCAAGCAAAGCTATGC+TGG | 0.490157 | 1.2:+8805201 | MS.gene33177:CDS |
| CCACCTGCGTAATATACAAC+CGG | 0.493909 | 1.2:-8804662 | None:intergenic |
| GAGTAGTGGTGAGGTGAGAG+GGG | 0.494532 | 1.2:+8804719 | MS.gene33177:CDS |
| AGTGTTACGAGGCGTTGAAT+CGG | 0.494656 | 1.2:+8804034 | MS.gene33177:CDS |
| TCACAAGAATTAAGAGAAGA+AGG | 0.494937 | 1.2:+8803784 | MS.gene33177:CDS |
| ATGTTAAAGCTGGATATGAA+TGG | 0.495987 | 1.2:+8805078 | MS.gene33177:CDS |
| TAAGGTTACGGATAAGGATA+AGG | 0.497434 | 1.2:+8804389 | MS.gene33177:CDS |
| GTATCCTCATCTTTGAAGCC+TGG | 0.498183 | 1.2:-8805451 | None:intergenic |
| AGTTGGTGAGAGATGTGATA+AGG | 0.498390 | 1.2:+8804517 | MS.gene33177:CDS |
| TCCAGGATGTAATGGAGTCT+TGG | 0.500662 | 1.2:-8805862 | None:intergenic |
| TTCTGAGTTGAGGTTAGCTG+AGG | 0.503420 | 1.2:+8804617 | MS.gene33177:CDS |
| GAGAAGAAAGCCACCAATGT+TGG | 0.504400 | 1.2:+8804321 | MS.gene33177:CDS |
| CTTTGGCTTTGTTTAATTGG+GGG | 0.508071 | 1.2:+8804982 | MS.gene33177:CDS |
| ATGAGTAGTGGTGAGGTGAG+AGG | 0.509195 | 1.2:+8804717 | MS.gene33177:CDS |
| GTTGATGTGGGAGGAGATTG+AGG | 0.511356 | 1.2:+8805322 | MS.gene33177:CDS |
| GGATTACTATGGAGGAGAAA+GGG | 0.511446 | 1.2:+8804142 | MS.gene33177:CDS |
| TTACGAGGCGTTGAATCGGT+TGG | 0.511704 | 1.2:+8804038 | MS.gene33177:CDS |
| TGTTAAAGCTGGATATGAAT+GGG | 0.512823 | 1.2:+8805079 | MS.gene33177:CDS |
| GAAGATATATTCGGAGGCGA+TGG | 0.514826 | 1.2:+8804887 | MS.gene33177:CDS |
| AGGAAGATAAAGCGGTTACT+AGG | 0.515733 | 1.2:+8804430 | MS.gene33177:CDS |
| TCTGTTGTGGAATTTAAGCT+AGG | 0.515915 | 1.2:+8805512 | MS.gene33177:CDS |
| GACTCGAACCATTGTTTCGT+CGG | 0.516704 | 1.2:+8805833 | MS.gene33177:CDS |
| AATGTCAGTTGTAGAAGCTC+CGG | 0.523785 | 1.2:-8805588 | None:intergenic |
| AGGCTGTTTAAGAACCATGT+TGG | 0.526266 | 1.2:+8804822 | MS.gene33177:CDS |
| GCCGAATAATTCAACTGCGT+TGG | 0.526616 | 1.2:+8804101 | MS.gene33177:CDS |
| AATGGTTCGAGTCGGAAAGT+TGG | 0.527329 | 1.2:-8805823 | None:intergenic |
| TCTCTCGAGCATGTTAAAGC+TGG | 0.529882 | 1.2:+8805068 | MS.gene33177:CDS |
| TGCGGATAAGTTTCAAGAGA+TGG | 0.533330 | 1.2:+8804956 | MS.gene33177:CDS |
| GCGGTTTAGGAAAGTTGTTA+GGG | 0.534543 | 1.2:+8804227 | MS.gene33177:CDS |
| ACTTTCCTAAACCGCGCAGC+AGG | 0.535349 | 1.2:-8804219 | None:intergenic |
| TAGTTTGAGGATTACTATGG+AGG | 0.535558 | 1.2:+8804134 | MS.gene33177:CDS |
| GTTGAAAAGTTTGAACTAGC+CGG | 0.537285 | 1.2:+8805569 | MS.gene33177:CDS |
| AGGAGACCCTCGTAGAAGTC+CGG | 0.539637 | 1.2:-8805158 | None:intergenic |
| TGAGAGATGTGATAAGGGAT+AGG | 0.541480 | 1.2:+8804523 | MS.gene33177:CDS |
| GCATGGAATGAGATGTATGA+TGG | 0.545970 | 1.2:+8805784 | MS.gene33177:CDS |
| TTGCTGTTTCATTAGAACAA+TGG | 0.546528 | 1.2:-8805628 | None:intergenic |
| AGAATCTGTGAAAATCAAAC+CGG | 0.549691 | 1.2:+8805139 | MS.gene33177:CDS |
| ATTAACATTTCCAACATTGG+TGG | 0.550948 | 1.2:-8804331 | None:intergenic |
| TCTGAGTTGAGGTTAGCTGA+GGG | 0.552191 | 1.2:+8804618 | MS.gene33177:CDS |
| GATATATTCGGAGGCGATGG+AGG | 0.553793 | 1.2:+8804890 | MS.gene33177:CDS |
| GGATGATTACTGTGGAGGAA+TGG | 0.555855 | 1.2:+8804784 | MS.gene33177:CDS |
| TTCTTGTGAAGTATAAGGAT+AGG | 0.556963 | 1.2:+8804565 | MS.gene33177:CDS |
| TCGATGACATAGTGCAAGCA+TGG | 0.557013 | 1.2:+8805767 | MS.gene33177:CDS |
| GCCATGTGTTATATGCAATT+GGG | 0.559073 | 1.2:+8803922 | MS.gene33177:CDS |
| ATTCAACGCCTCGTAACACT+TGG | 0.561428 | 1.2:-8804031 | None:intergenic |
| GCTGCAGAACCTCCTCAAAA+GGG | 0.561685 | 1.2:-8805262 | None:intergenic |
| AAGTAGAGCCGCCTGCTGCG+CGG | 0.563860 | 1.2:+8804208 | MS.gene33177:CDS |
| ACAAGAACACCCTTTAACCC+CGG | 0.566730 | 1.2:-8804549 | None:intergenic |
| TGAGGTGAGAGGGGAGAATG+GGG | 0.567723 | 1.2:+8804728 | MS.gene33177:CDS |
| TCTTGTGAAGTATAAGGATA+GGG | 0.568474 | 1.2:+8804566 | MS.gene33177:CDS |
| AATGTTAATGTTAAGGTGAA+GGG | 0.568909 | 1.2:+8804351 | MS.gene33177:CDS |
| GGAACACGCCGACGAAACAA+TGG | 0.570618 | 1.2:-8805841 | None:intergenic |
| AACATGGGAGGAATGTTTGG+AGG | 0.573058 | 1.2:+8805541 | MS.gene33177:CDS |
| CATATAACACATGGCCATGT+TGG | 0.573374 | 1.2:-8803914 | None:intergenic |
| AAGAAAGGGCATAAAGGAGA+AGG | 0.575305 | 1.2:+8804267 | MS.gene33177:CDS |
| ACTGTTGATACCCAAGAGCT+AGG | 0.576141 | 1.2:-8805178 | None:intergenic |
| AAGGAGAAGGCGAGGAAGAG+CGG | 0.579153 | 1.2:+8804280 | MS.gene33177:CDS |
| TCCAAGACTCCATTACATCC+TGG | 0.582606 | 1.2:+8805861 | MS.gene33177:CDS |
| TTACTACTACTTCTGAGTTG+AGG | 0.582702 | 1.2:+8804607 | MS.gene33177:CDS |
| GAGGATTCAGTGACGAATGA+TGG | 0.587808 | 1.2:+8804909 | MS.gene33177:CDS |
| TAATGTTAATGTTAAGGTGA+AGG | 0.589069 | 1.2:+8804350 | MS.gene33177:CDS |
| AATGGCTTGTTCAGTTTGCG+AGG | 0.590314 | 1.2:+8804802 | MS.gene33177:CDS |
| TCCAAACATTCCTCCCATGT+TGG | 0.593550 | 1.2:-8805539 | None:intergenic |
| TTAGAGAAAATGGGTTTGCA+CGG | 0.595862 | 1.2:+8805392 | MS.gene33177:CDS |
| AGAAGGAGATAAGGGTGTTG+GGG | 0.600333 | 1.2:+8804755 | MS.gene33177:CDS |
| TTCCTAAACCGCGCAGCAGG+CGG | 0.600423 | 1.2:-8804216 | None:intergenic |
| ATATGGAGAGGATATTAGAT+GGG | 0.603947 | 1.2:+8804467 | MS.gene33177:CDS |
| TAATAGGATGATTACTGTGG+AGG | 0.608454 | 1.2:+8804779 | MS.gene33177:CDS |
| TTGCACTCGTTAATCGCTCG+AGG | 0.610141 | 1.2:-8803958 | None:intergenic |
| TGGATATGAATGGGCTACGA+AGG | 0.610634 | 1.2:+8805088 | MS.gene33177:CDS |
| TAACAAGGCAGAGGACAGCA+TGG | 0.611758 | 1.2:+8805289 | MS.gene33177:CDS |
| GGTGAATTGTAGTATGAAGT+TGG | 0.612990 | 1.2:+8804500 | MS.gene33177:CDS |
| AGAAGAGCTTTACTATACCT+CGG | 0.613368 | 1.2:-8804000 | None:intergenic |
| ATTGTATGAGCGTTCTGTTG+TGG | 0.617025 | 1.2:+8805499 | MS.gene33177:CDS |
| AACTTCATACTACAATTCAC+CGG | 0.617885 | 1.2:-8804498 | None:intergenic |
| GGTTCTGCAGCTCTATAACA+AGG | 0.619781 | 1.2:+8805274 | MS.gene33177:CDS |
| AAAAGGGATGTTGATGTGGG+AGG | 0.621444 | 1.2:+8805313 | MS.gene33177:CDS |
| ATCAAACCGGACTTCTACGA+GGG | 0.621754 | 1.2:+8805152 | MS.gene33177:CDS |
| TTGTTCTAATGAAACAGCAA+TGG | 0.622294 | 1.2:+8805631 | MS.gene33177:CDS |
| AGGGCATAAAGGAGAAGGCG+AGG | 0.623032 | 1.2:+8804272 | MS.gene33177:CDS |
| CCGGTTGTATATTACGCAGG+TGG | 0.623338 | 1.2:+8804662 | MS.gene33177:CDS |
| TTCGTATCTGGATATTCATG+AGG | 0.624473 | 1.2:+8804857 | MS.gene33177:CDS |
| TCTAATGAAACAGCAATGGA+AGG | 0.625596 | 1.2:+8805635 | MS.gene33177:CDS |
| AATCAGAATCAAACCCAACA+TGG | 0.625835 | 1.2:-8804836 | None:intergenic |
| AGTTGTTAAGGAAGATAAAG+CGG | 0.626540 | 1.2:+8804422 | MS.gene33177:CDS |
| GTGAAGTATAAGGATAGGGA+AGG | 0.628310 | 1.2:+8804570 | MS.gene33177:CDS |
| TTAAGCTAGGACTACCAACA+TGG | 0.632474 | 1.2:+8805525 | MS.gene33177:CDS |
| GCAGCTCTATAACAAGGCAG+AGG | 0.632813 | 1.2:+8805280 | MS.gene33177:CDS |
| GATCCGGTTGTATATTACGC+AGG | 0.635696 | 1.2:+8804659 | MS.gene33177:CDS |
| TGCACATCTTCACACCAACA+TGG | 0.638664 | 1.2:+8803900 | MS.gene33177:CDS |
| TTGTGACATGTTGATGAACA+TGG | 0.639131 | 1.2:-8803767 | None:intergenic |
| TCAAACAACAACAAGAACAA+AGG | 0.642821 | 1.2:+8803709 | MS.gene33177:CDS |
| TGTGAAGTTGATATATGGAG+AGG | 0.643074 | 1.2:+8804455 | MS.gene33177:CDS |
| GACGAAACAATGGTTCGAGT+CGG | 0.643395 | 1.2:-8805831 | None:intergenic |
| AGAGCTGTTTGATATTGCTG+CGG | 0.643756 | 1.2:+8804938 | MS.gene33177:CDS |
| TAGAAGAGCCAAGTGTTACG+AGG | 0.646607 | 1.2:+8804023 | MS.gene33177:CDS |
| TGCACTCGTTAATCGCTCGA+GGG | 0.647015 | 1.2:-8803957 | None:intergenic |
| AAGACCAGGCTTCAAAGATG+AGG | 0.650447 | 1.2:+8805447 | MS.gene33177:CDS |
| GGAGCTTCTACAACTGACAT+TGG | 0.653645 | 1.2:+8805590 | MS.gene33177:CDS |
| ATGTTCACTTGTCTAAGGCG+AGG | 0.655166 | 1.2:+8805006 | MS.gene33177:CDS |
| CATGGAATGAGATGTATGAT+GGG | 0.662583 | 1.2:+8805785 | MS.gene33177:CDS |
| ACCCAATTGCATATAACACA+TGG | 0.669146 | 1.2:-8803923 | None:intergenic |
| TATGATGAAAAGATGAGTAG+TGG | 0.669294 | 1.2:+8804705 | MS.gene33177:CDS |
| TGATAAGGGATAGGTATCCG+GGG | 0.671748 | 1.2:+8804532 | MS.gene33177:CDS |
| TAAGCTAGGACTACCAACAT+GGG | 0.675321 | 1.2:+8805526 | MS.gene33177:CDS |
| TTCACTTGTCTAAGGCGAGG+AGG | 0.676418 | 1.2:+8805009 | MS.gene33177:CDS |
| TTGCTCTGCAAGTTTCGCCG+AGG | 0.682933 | 1.2:+8803983 | MS.gene33177:CDS |
| TGGGATGAAGATATATTCGG+AGG | 0.690271 | 1.2:+8804881 | MS.gene33177:CDS |
| TGAAAAGATGAGTAGTGGTG+AGG | 0.697497 | 1.2:+8804710 | MS.gene33177:CDS |
| GGCTAATAGGATGATTACTG+TGG | 0.700839 | 1.2:+8804776 | MS.gene33177:CDS |
| AATCAAACCGGACTTCTACG+AGG | 0.701391 | 1.2:+8805151 | MS.gene33177:CDS |
| GAAGATGTGCAACATCTATG+TGG | 0.701400 | 1.2:-8803888 | None:intergenic |
| GCTAGGACTACCAACATGGG+AGG | 0.703040 | 1.2:+8805529 | MS.gene33177:CDS |
| GGAATGAGATGTATGATGGG+TGG | 0.713527 | 1.2:+8805788 | MS.gene33177:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATATTTGAAACATAAA+AGG | - | chr1.2:8805706-8805725 | None:intergenic | 10.0% |
| !!! | TTTATGTTTCAAATATTTTA+GGG | + | chr1.2:8805706-8805725 | MS.gene33177:intron | 10.0% |
| !!! | TTTTATGTTTCAAATATTTT+AGG | + | chr1.2:8805705-8805724 | MS.gene33177:intron | 10.0% |
| !! | AAATGTTAATGTTAATGTTA+AGG | + | chr1.2:8804344-8804363 | MS.gene33177:CDS | 15.0% |
| !! | AAGATTAATAAGAAGAAGAA+AGG | + | chr1.2:8804252-8804271 | MS.gene33177:CDS | 20.0% |
| !! | AGATTAATAAGAAGAAGAAA+GGG | + | chr1.2:8804253-8804272 | MS.gene33177:CDS | 20.0% |
| ! | AACAATAAGAATATCGAAGT+TGG | + | chr1.2:8805239-8805258 | MS.gene33177:CDS | 25.0% |
| ! | AACATTAACATTTCCAACAT+TGG | - | chr1.2:8804337-8804356 | None:intergenic | 25.0% |
| ! | AATGTTAATGTTAAGGTGAA+GGG | + | chr1.2:8804351-8804370 | MS.gene33177:CDS | 25.0% |
| ! | TAATGTTAATGTTAAGGTGA+AGG | + | chr1.2:8804350-8804369 | MS.gene33177:CDS | 25.0% |
| !! | ATACAGATATACCTTTTATG+GGG | + | chr1.2:8805470-8805489 | MS.gene33177:CDS | 25.0% |
| !! | GATACAGATATACCTTTTAT+GGG | + | chr1.2:8805469-8805488 | MS.gene33177:CDS | 25.0% |
| !!! | TTCTTGTTGTTGTTTGATTT+TGG | - | chr1.2:8803706-8803725 | None:intergenic | 25.0% |
| AAAATTGTTCCAGGATGTAA+TGG | - | chr1.2:8805873-8805892 | None:intergenic | 30.0% | |
| AACTTCATACTACAATTCAC+CGG | - | chr1.2:8804501-8804520 | None:intergenic | 30.0% | |
| AATGCACAGTTAGAGAAAAT+GGG | + | chr1.2:8805383-8805402 | MS.gene33177:CDS | 30.0% | |
| AGAATCTGTGAAAATCAAAC+CGG | + | chr1.2:8805139-8805158 | MS.gene33177:CDS | 30.0% | |
| AGATTTGAAGGATAAGGTTA+CGG | + | chr1.2:8804377-8804396 | MS.gene33177:CDS | 30.0% | |
| AGTTGTTAAGGAAGATAAAG+CGG | + | chr1.2:8804422-8804441 | MS.gene33177:CDS | 30.0% | |
| ATATGGAGAGGATATTAGAT+GGG | + | chr1.2:8804467-8804486 | MS.gene33177:CDS | 30.0% | |
| ATGTTAAAGCTGGATATGAA+TGG | + | chr1.2:8805078-8805097 | MS.gene33177:CDS | 30.0% | |
| ATTAACATTTCCAACATTGG+TGG | - | chr1.2:8804334-8804353 | None:intergenic | 30.0% | |
| TAATGCACAGTTAGAGAAAA+TGG | + | chr1.2:8805382-8805401 | MS.gene33177:CDS | 30.0% | |
| TATATGGAGAGGATATTAGA+TGG | + | chr1.2:8804466-8804485 | MS.gene33177:CDS | 30.0% | |
| TATGATGAAAAGATGAGTAG+TGG | + | chr1.2:8804705-8804724 | MS.gene33177:CDS | 30.0% | |
| TCAAACAACAACAAGAACAA+AGG | + | chr1.2:8803709-8803728 | MS.gene33177:CDS | 30.0% | |
| TCACAAGAATTAAGAGAAGA+AGG | + | chr1.2:8803784-8803803 | MS.gene33177:CDS | 30.0% | |
| TCTTGTGAAGTATAAGGATA+GGG | + | chr1.2:8804566-8804585 | MS.gene33177:CDS | 30.0% | |
| TGATAGTTTGAGGATTACTA+TGG | + | chr1.2:8804131-8804150 | MS.gene33177:CDS | 30.0% | |
| TGTTAAAGCTGGATATGAAT+GGG | + | chr1.2:8805079-8805098 | MS.gene33177:CDS | 30.0% | |
| TTCCAAAAAAAAGACAACGA+AGG | + | chr1.2:8803820-8803839 | MS.gene33177:CDS | 30.0% | |
| TTCTTGTGAAGTATAAGGAT+AGG | + | chr1.2:8804565-8804584 | MS.gene33177:CDS | 30.0% | |
| TTGTTCTAATGAAACAGCAA+TGG | + | chr1.2:8805631-8805650 | MS.gene33177:CDS | 30.0% | |
| ! | CTCATCTTTTCATCATAACA+CGG | - | chr1.2:8804702-8804721 | None:intergenic | 30.0% |
| ! | GGATACAGATATACCTTTTA+TGG | + | chr1.2:8805468-8805487 | MS.gene33177:CDS | 30.0% |
| !! | AAACCACTTTTCATGATTAC+AGG | + | chr1.2:8805736-8805755 | MS.gene33177:intron | 30.0% |
| !! | AACCACTTTTCATGATTACA+GGG | + | chr1.2:8805737-8805756 | MS.gene33177:intron | 30.0% |
| !! | TGCTTTGGCTTTGTTTAATT+GGG | + | chr1.2:8804980-8804999 | MS.gene33177:CDS | 30.0% |
| !! | TTGCTGTTTCATTAGAACAA+TGG | - | chr1.2:8805631-8805650 | None:intergenic | 30.0% |
| AACAGAACGCTCATACAATA+AGG | - | chr1.2:8805498-8805517 | None:intergenic | 35.0% | |
| AACCCTGTAATCATGAAAAG+TGG | - | chr1.2:8805742-8805761 | None:intergenic | 35.0% | |
| AATCAGAATCAAACCCAACA+TGG | - | chr1.2:8804839-8804858 | None:intergenic | 35.0% | |
| ACCCAATTGCATATAACACA+TGG | - | chr1.2:8803926-8803945 | None:intergenic | 35.0% | |
| AGAAGAGCTTTACTATACCT+CGG | - | chr1.2:8804003-8804022 | None:intergenic | 35.0% | |
| ATCTGGATATTCATGAGGTT+GGG | + | chr1.2:8804862-8804881 | MS.gene33177:CDS | 35.0% | |
| CATGGAATGAGATGTATGAT+GGG | + | chr1.2:8805785-8805804 | MS.gene33177:CDS | 35.0% | |
| GCCATGTGTTATATGCAATT+GGG | + | chr1.2:8803922-8803941 | MS.gene33177:CDS | 35.0% | |
| GGATAGTAACGAAGTTGTTA+AGG | + | chr1.2:8804410-8804429 | MS.gene33177:CDS | 35.0% | |
| GGTGAATTGTAGTATGAAGT+TGG | + | chr1.2:8804500-8804519 | MS.gene33177:CDS | 35.0% | |
| GGTTGGGATGAAGATATATT+CGG | + | chr1.2:8804878-8804897 | MS.gene33177:CDS | 35.0% | |
| GTTGAAAAGTTTGAACTAGC+CGG | + | chr1.2:8805569-8805588 | MS.gene33177:CDS | 35.0% | |
| TAAGGTTACGGATAAGGATA+AGG | + | chr1.2:8804389-8804408 | MS.gene33177:CDS | 35.0% | |
| TAATAGGATGATTACTGTGG+AGG | + | chr1.2:8804779-8804798 | MS.gene33177:CDS | 35.0% | |
| TAGTTTGAGGATTACTATGG+AGG | + | chr1.2:8804134-8804153 | MS.gene33177:CDS | 35.0% | |
| TATCTGGATATTCATGAGGT+TGG | + | chr1.2:8804861-8804880 | MS.gene33177:CDS | 35.0% | |
| TCCAACGCAGTTGAATTATT+CGG | - | chr1.2:8804105-8804124 | None:intergenic | 35.0% | |
| TCTAATGAAACAGCAATGGA+AGG | + | chr1.2:8805635-8805654 | MS.gene33177:CDS | 35.0% | |
| TCTGTTGTGGAATTTAAGCT+AGG | + | chr1.2:8805512-8805531 | MS.gene33177:CDS | 35.0% | |
| TGTTATATGCAATTGGGTCT+TGG | + | chr1.2:8803928-8803947 | MS.gene33177:CDS | 35.0% | |
| TTACTACTACTTCTGAGTTG+AGG | + | chr1.2:8804607-8804626 | MS.gene33177:CDS | 35.0% | |
| TTCGTATCTGGATATTCATG+AGG | + | chr1.2:8804857-8804876 | MS.gene33177:CDS | 35.0% | |
| ! | AAGAAGAAGAAAGGGCATAA+AGG | + | chr1.2:8804261-8804280 | MS.gene33177:CDS | 35.0% |
| ! | GCAACATCTATGTGGTTTTT+GGG | - | chr1.2:8803883-8803902 | None:intergenic | 35.0% |
| ! | GTTTGATTCTGATTCGTATC+TGG | + | chr1.2:8804845-8804864 | MS.gene33177:CDS | 35.0% |
| ! | TGCAACATCTATGTGGTTTT+TGG | - | chr1.2:8803884-8803903 | None:intergenic | 35.0% |
| ! | TGGAGATTCTTGATAGTTTG+AGG | + | chr1.2:8804121-8804140 | MS.gene33177:CDS | 35.0% |
| ! | TTAGAGAAAATGGGTTTGCA+CGG | + | chr1.2:8805392-8805411 | MS.gene33177:CDS | 35.0% |
| ! | TTGTGACATGTTGATGAACA+TGG | - | chr1.2:8803770-8803789 | None:intergenic | 35.0% |
| !! | AGGACTGTGAAGTTGATATA+TGG | + | chr1.2:8804450-8804469 | MS.gene33177:CDS | 35.0% |
| !! | CTGCTTTGGCTTTGTTTAAT+TGG | + | chr1.2:8804979-8804998 | MS.gene33177:CDS | 35.0% |
| !! | CTTTGGCTTTGTTTAATTGG+GGG | + | chr1.2:8804982-8805001 | MS.gene33177:CDS | 35.0% |
| !! | GCTTTGGCTTTGTTTAATTG+GGG | + | chr1.2:8804981-8805000 | MS.gene33177:CDS | 35.0% |
| !! | TGTGAAGTTGATATATGGAG+AGG | + | chr1.2:8804455-8804474 | MS.gene33177:CDS | 35.0% |
| !!! | CTCCTTCGTTGTCTTTTTTT+TGG | - | chr1.2:8803825-8803844 | None:intergenic | 35.0% |
| !!! | GTTTTTGGGTAAGAGTTTGA+GGG | - | chr1.2:8803869-8803888 | None:intergenic | 35.0% |
| AATGTCAGTTGTAGAAGCTC+CGG | - | chr1.2:8805591-8805610 | None:intergenic | 40.0% | |
| AGAGCTGTTTGATATTGCTG+CGG | + | chr1.2:8804938-8804957 | MS.gene33177:CDS | 40.0% | |
| AGGAAGATAAAGCGGTTACT+AGG | + | chr1.2:8804430-8804449 | MS.gene33177:CDS | 40.0% | |
| AGGATTACTATGGAGGAGAA+AGG | + | chr1.2:8804141-8804160 | MS.gene33177:CDS | 40.0% | |
| AGGCTGTTTAAGAACCATGT+TGG | + | chr1.2:8804822-8804841 | MS.gene33177:CDS | 40.0% | |
| ATTGAGGAACAGCGTTTGAA+TGG | + | chr1.2:8805338-8805357 | MS.gene33177:CDS | 40.0% | |
| ATTGTATGAGCGTTCTGTTG+TGG | + | chr1.2:8805499-8805518 | MS.gene33177:CDS | 40.0% | |
| CATATAACACATGGCCATGT+TGG | - | chr1.2:8803917-8803936 | None:intergenic | 40.0% | |
| GAAACCAGCTGGAAAAAAGA+AGG | + | chr1.2:8803669-8803688 | MS.gene33177:CDS | 40.0% | |
| GAAGATGTGCAACATCTATG+TGG | - | chr1.2:8803891-8803910 | None:intergenic | 40.0% | |
| GAAGGATAAGGTTACGGATA+AGG | + | chr1.2:8804383-8804402 | MS.gene33177:CDS | 40.0% | |
| GCATGGAATGAGATGTATGA+TGG | + | chr1.2:8805784-8805803 | MS.gene33177:CDS | 40.0% | |
| GCGGTTTAGGAAAGTTGTTA+GGG | + | chr1.2:8804227-8804246 | MS.gene33177:CDS | 40.0% | |
| GGAAAAAGGGATGTTGATGT+GGG | + | chr1.2:8805310-8805329 | MS.gene33177:CDS | 40.0% | |
| GGATTACTATGGAGGAGAAA+GGG | + | chr1.2:8804142-8804161 | MS.gene33177:CDS | 40.0% | |
| GGCCATGTGTTATATGCAAT+TGG | + | chr1.2:8803921-8803940 | MS.gene33177:CDS | 40.0% | |
| GGCTAATAGGATGATTACTG+TGG | + | chr1.2:8804776-8804795 | MS.gene33177:CDS | 40.0% | |
| GGCTGTTTAAGAACCATGTT+GGG | + | chr1.2:8804823-8804842 | MS.gene33177:CDS | 40.0% | |
| GGGTGAAGATTTGAAGGATA+AGG | + | chr1.2:8804371-8804390 | MS.gene33177:CDS | 40.0% | |
| GGGTGTTCTTGTGAAGTATA+AGG | + | chr1.2:8804560-8804579 | MS.gene33177:CDS | 40.0% | |
| GTGAAGTATAAGGATAGGGA+AGG | + | chr1.2:8804570-8804589 | MS.gene33177:CDS | 40.0% | |
| TAAGCTAGGACTACCAACAT+GGG | + | chr1.2:8805526-8805545 | MS.gene33177:CDS | 40.0% | |
| TAAGGATAGGGAAGGTGATT+TGG | + | chr1.2:8804578-8804597 | MS.gene33177:CDS | 40.0% | |
| TGAAAAGATGAGTAGTGGTG+AGG | + | chr1.2:8804710-8804729 | MS.gene33177:CDS | 40.0% | |
| TGAAACAGCAATGGAAGGTA+CGG | + | chr1.2:8805640-8805659 | MS.gene33177:intron | 40.0% | |
| TGAGAGATGTGATAAGGGAT+AGG | + | chr1.2:8804523-8804542 | MS.gene33177:CDS | 40.0% | |
| TGCGGATAAGTTTCAAGAGA+TGG | + | chr1.2:8804956-8804975 | MS.gene33177:CDS | 40.0% | |
| TGGAAAAAGGGATGTTGATG+TGG | + | chr1.2:8805309-8805328 | MS.gene33177:CDS | 40.0% | |
| TGGGATGAAGATATATTCGG+AGG | + | chr1.2:8804881-8804900 | MS.gene33177:CDS | 40.0% | |
| TGTGATAAGGGATAGGTATC+CGG | + | chr1.2:8804530-8804549 | MS.gene33177:CDS | 40.0% | |
| TTAAGCTAGGACTACCAACA+TGG | + | chr1.2:8805525-8805544 | MS.gene33177:CDS | 40.0% | |
| ! | AAGAAAGGGCATAAAGGAGA+AGG | + | chr1.2:8804267-8804286 | MS.gene33177:CDS | 40.0% |
| ! | ACAATAAGGTGCCCCATAAA+AGG | - | chr1.2:8805484-8805503 | None:intergenic | 40.0% |
| ! | GTATATTACGCAGGTGGATT+TGG | + | chr1.2:8804668-8804687 | MS.gene33177:CDS | 40.0% |
| ! | GTTGGTGAGAGATGTGATAA+GGG | + | chr1.2:8804518-8804537 | MS.gene33177:CDS | 40.0% |
| !! | AGTTGGTGAGAGATGTGATA+AGG | + | chr1.2:8804517-8804536 | MS.gene33177:CDS | 40.0% |
| !!! | GGTTTTTGGGTAAGAGTTTG+AGG | - | chr1.2:8803870-8803889 | None:intergenic | 40.0% |
| !!! | TGTTCCTTCTTTTTTCCAGC+TGG | - | chr1.2:8803676-8803695 | None:intergenic | 40.0% |
| AAAAGGGATGTTGATGTGGG+AGG | + | chr1.2:8805313-8805332 | MS.gene33177:CDS | 45.0% | |
| AACATGGGAGGAATGTTTGG+AGG | + | chr1.2:8805541-8805560 | MS.gene33177:CDS | 45.0% | |
| AAGACCAGGCTTCAAAGATG+AGG | + | chr1.2:8805447-8805466 | MS.gene33177:CDS | 45.0% | |
| AATCAAACCGGACTTCTACG+AGG | + | chr1.2:8805151-8805170 | MS.gene33177:CDS | 45.0% | |
| AATGGTTCGAGTCGGAAAGT+TGG | - | chr1.2:8805826-8805845 | None:intergenic | 45.0% | |
| ACAAGAACACCCTTTAACCC+CGG | - | chr1.2:8804552-8804571 | None:intergenic | 45.0% | |
| ACCAACATGGGAGGAATGTT+TGG | + | chr1.2:8805538-8805557 | MS.gene33177:CDS | 45.0% | |
| ACTGTTGATACCCAAGAGCT+AGG | - | chr1.2:8805181-8805200 | None:intergenic | 45.0% | |
| ATCAAACCGGACTTCTACGA+GGG | + | chr1.2:8805152-8805171 | MS.gene33177:CDS | 45.0% | |
| ATTCAACGCCTCGTAACACT+TGG | - | chr1.2:8804034-8804053 | None:intergenic | 45.0% | |
| CAGAGGACAGCATGGAAAAA+GGG | + | chr1.2:8805297-8805316 | MS.gene33177:CDS | 45.0% | |
| CCACCTGCGTAATATACAAC+CGG | - | chr1.2:8804665-8804684 | None:intergenic | 45.0% | |
| CGCGGTTTAGGAAAGTTGTT+AGG | + | chr1.2:8804226-8804245 | MS.gene33177:CDS | 45.0% | |
| GAAGATATATTCGGAGGCGA+TGG | + | chr1.2:8804887-8804906 | MS.gene33177:CDS | 45.0% | |
| GACGAAACAATGGTTCGAGT+CGG | - | chr1.2:8805834-8805853 | None:intergenic | 45.0% | |
| GACTCGAACCATTGTTTCGT+CGG | + | chr1.2:8805833-8805852 | MS.gene33177:CDS | 45.0% | |
| GAGAAGAAAGCCACCAATGT+TGG | + | chr1.2:8804321-8804340 | MS.gene33177:CDS | 45.0% | |
| GAGGATTCAGTGACGAATGA+TGG | + | chr1.2:8804909-8804928 | MS.gene33177:CDS | 45.0% | |
| GATAGGTATCCGGGGTTAAA+GGG | + | chr1.2:8804540-8804559 | MS.gene33177:CDS | 45.0% | |
| GATCCGGTTGTATATTACGC+AGG | + | chr1.2:8804659-8804678 | MS.gene33177:CDS | 45.0% | |
| GCCGAATAATTCAACTGCGT+TGG | + | chr1.2:8804101-8804120 | MS.gene33177:CDS | 45.0% | |
| GGAGCTTCTACAACTGACAT+TGG | + | chr1.2:8805590-8805609 | MS.gene33177:CDS | 45.0% | |
| GGATGATTACTGTGGAGGAA+TGG | + | chr1.2:8804784-8804803 | MS.gene33177:CDS | 45.0% | |
| GGGGAATGTTCACTTGTCTA+AGG | + | chr1.2:8805001-8805020 | MS.gene33177:CDS | 45.0% | |
| GGTGAAGGGTGAAGATTTGA+AGG | + | chr1.2:8804365-8804384 | MS.gene33177:CDS | 45.0% | |
| GGTTCTGCAGCTCTATAACA+AGG | + | chr1.2:8805274-8805293 | MS.gene33177:CDS | 45.0% | |
| GTGATAAGGGATAGGTATCC+GGG | + | chr1.2:8804531-8804550 | MS.gene33177:CDS | 45.0% | |
| GTTTCAAGAGATGGCTGCTT+TGG | + | chr1.2:8804965-8804984 | MS.gene33177:CDS | 45.0% | |
| TAGAAGAGCCAAGTGTTACG+AGG | + | chr1.2:8804023-8804042 | MS.gene33177:CDS | 45.0% | |
| TCCAAACATTCCTCCCATGT+TGG | - | chr1.2:8805542-8805561 | None:intergenic | 45.0% | |
| TCCAAGACTCCATTACATCC+TGG | + | chr1.2:8805861-8805880 | MS.gene33177:CDS | 45.0% | |
| TCGATGACATAGTGCAAGCA+TGG | + | chr1.2:8805767-8805786 | MS.gene33177:CDS | 45.0% | |
| TCTCTCGAGCATGTTAAAGC+TGG | + | chr1.2:8805068-8805087 | MS.gene33177:CDS | 45.0% | |
| TGACGAGACTGAGATTGCTT+TGG | + | chr1.2:8804173-8804192 | MS.gene33177:CDS | 45.0% | |
| TGATAAGGGATAGGTATCCG+GGG | + | chr1.2:8804532-8804551 | MS.gene33177:CDS | 45.0% | |
| TGCACATCTTCACACCAACA+TGG | + | chr1.2:8803900-8803919 | MS.gene33177:CDS | 45.0% | |
| TTGAGCAAGCAAAGCTATGC+TGG | + | chr1.2:8805201-8805220 | MS.gene33177:CDS | 45.0% | |
| ! | ATGGGCTACGAAGGAGTATA+AGG | + | chr1.2:8805097-8805116 | MS.gene33177:CDS | 45.0% |
| ! | ATGTTCACTTGTCTAAGGCG+AGG | + | chr1.2:8805006-8805025 | MS.gene33177:CDS | 45.0% |
| ! | GAAACAGCAATGGAAGGTAC+GGG | + | chr1.2:8805641-8805660 | MS.gene33177:intron | 45.0% |
| ! | GGAATGAGATGTATGATGGG+TGG | + | chr1.2:8805788-8805807 | MS.gene33177:CDS | 45.0% |
| ! | TACGCAGGTGGATTTGGATA+TGG | + | chr1.2:8804674-8804693 | MS.gene33177:CDS | 45.0% |
| ! | TATCGAAGTTGGCCCTTTTG+AGG | + | chr1.2:8805250-8805269 | MS.gene33177:CDS | 45.0% |
| ! | TCCAGGATGTAATGGAGTCT+TGG | - | chr1.2:8805865-8805884 | None:intergenic | 45.0% |
| ! | TCTGAGTTGAGGTTAGCTGA+GGG | + | chr1.2:8804618-8804637 | MS.gene33177:CDS | 45.0% |
| ! | TTCTGAAGAAGCTGAAGACC+AGG | + | chr1.2:8805433-8805452 | MS.gene33177:CDS | 45.0% |
| ! | TTCTGAGTTGAGGTTAGCTG+AGG | + | chr1.2:8804617-8804636 | MS.gene33177:CDS | 45.0% |
| !! | AATGGCTTGTTCAGTTTGCG+AGG | + | chr1.2:8804802-8804821 | MS.gene33177:CDS | 45.0% |
| !! | AGAAGGAGATAAGGGTGTTG+GGG | + | chr1.2:8804755-8804774 | MS.gene33177:CDS | 45.0% |
| !! | AGTGTTACGAGGCGTTGAAT+CGG | + | chr1.2:8804034-8804053 | MS.gene33177:CDS | 45.0% |
| !! | ATAAGGGTGTTGGGGCTAAT+AGG | + | chr1.2:8804763-8804782 | MS.gene33177:CDS | 45.0% |
| !! | GAGAAGGAGATAAGGGTGTT+GGG | + | chr1.2:8804754-8804773 | MS.gene33177:CDS | 45.0% |
| !! | GTATCCTCATCTTTGAAGCC+TGG | - | chr1.2:8805454-8805473 | None:intergenic | 45.0% |
| !! | TGGATATGAATGGGCTACGA+AGG | + | chr1.2:8805088-8805107 | MS.gene33177:CDS | 45.0% |
| AGCTGCAGAACCTCCTCAAA+AGG | - | chr1.2:8805266-8805285 | None:intergenic | 50.0% | |
| ATGAGTAGTGGTGAGGTGAG+AGG | + | chr1.2:8804717-8804736 | MS.gene33177:CDS | 50.0% | |
| CCGGTTGTATATTACGCAGG+TGG | + | chr1.2:8804662-8804681 | MS.gene33177:CDS | 50.0% | |
| GATATATTCGGAGGCGATGG+AGG | + | chr1.2:8804890-8804909 | MS.gene33177:CDS | 50.0% | |
| GCAGAGGACAGCATGGAAAA+AGG | + | chr1.2:8805296-8805315 | MS.gene33177:CDS | 50.0% | |
| GCAGCTCTATAACAAGGCAG+AGG | + | chr1.2:8805280-8805299 | MS.gene33177:CDS | 50.0% | |
| GCTGCAGAACCTCCTCAAAA+GGG | - | chr1.2:8805265-8805284 | None:intergenic | 50.0% | |
| GGATAGGTATCCGGGGTTAA+AGG | + | chr1.2:8804539-8804558 | MS.gene33177:CDS | 50.0% | |
| GGGGTTGGAGAAGGAGATAA+GGG | + | chr1.2:8804747-8804766 | MS.gene33177:CDS | 50.0% | |
| GTTGATGTGGGAGGAGATTG+AGG | + | chr1.2:8805322-8805341 | MS.gene33177:CDS | 50.0% | |
| TAACAAGGCAGAGGACAGCA+TGG | + | chr1.2:8805289-8805308 | MS.gene33177:CDS | 50.0% | |
| TATTAGATGGGCGCAGTTGC+CGG | + | chr1.2:8804479-8804498 | MS.gene33177:CDS | 50.0% | |
| TGAGTAGTGGTGAGGTGAGA+GGG | + | chr1.2:8804718-8804737 | MS.gene33177:CDS | 50.0% | |
| TGCACTCGTTAATCGCTCGA+GGG | - | chr1.2:8803960-8803979 | None:intergenic | 50.0% | |
| TGGGGTTGGAGAAGGAGATA+AGG | + | chr1.2:8804746-8804765 | MS.gene33177:CDS | 50.0% | |
| TTGCACTCGTTAATCGCTCG+AGG | - | chr1.2:8803961-8803980 | None:intergenic | 50.0% | |
| ! | GGAGAAGGAGATAAGGGTGT+TGG | + | chr1.2:8804753-8804772 | MS.gene33177:CDS | 50.0% |
| ! | GGCGTTGAATCGGTTGGATT+TGG | + | chr1.2:8804044-8804063 | MS.gene33177:CDS | 50.0% |
| ! | GGGTTTGCACGGTCTTTTCA+GGG | + | chr1.2:8805403-8805422 | MS.gene33177:CDS | 50.0% |
| ! | GTCATGTGCTTGGTTCGATC+CGG | + | chr1.2:8804643-8804662 | MS.gene33177:CDS | 50.0% |
| ! | TGGGTTTGCACGGTCTTTTC+AGG | + | chr1.2:8805402-8805421 | MS.gene33177:CDS | 50.0% |
| ! | TTCACTTGTCTAAGGCGAGG+AGG | + | chr1.2:8805009-8805028 | MS.gene33177:CDS | 50.0% |
| !! | CGAGTGCCTTTTCAGGAAGA+CGG | + | chr1.2:8805032-8805051 | MS.gene33177:CDS | 50.0% |
| !! | GAGTGCCTTTTCAGGAAGAC+GGG | + | chr1.2:8805033-8805052 | MS.gene33177:CDS | 50.0% |
| !! | TTACGAGGCGTTGAATCGGT+TGG | + | chr1.2:8804038-8804057 | MS.gene33177:CDS | 50.0% |
| AAGGAGAAGGCGAGGAAGAG+CGG | + | chr1.2:8804280-8804299 | MS.gene33177:CDS | 55.0% | |
| ACTTTCCTAAACCGCGCAGC+AGG | - | chr1.2:8804222-8804241 | None:intergenic | 55.0% | |
| AGGAGACCCTCGTAGAAGTC+CGG | - | chr1.2:8805161-8805180 | None:intergenic | 55.0% | |
| AGGGCATAAAGGAGAAGGCG+AGG | + | chr1.2:8804272-8804291 | MS.gene33177:CDS | 55.0% | |
| CTCGACCCGTCTTCCTGAAA+AGG | - | chr1.2:8805041-8805060 | None:intergenic | 55.0% | |
| GAGTAGTGGTGAGGTGAGAG+GGG | + | chr1.2:8804719-8804738 | MS.gene33177:CDS | 55.0% | |
| GCTAGGACTACCAACATGGG+AGG | + | chr1.2:8805529-8805548 | MS.gene33177:CDS | 55.0% | |
| GCTGAGGGTTGTCATGTGCT+TGG | + | chr1.2:8804633-8804652 | MS.gene33177:CDS | 55.0% | |
| GGAACACGCCGACGAAACAA+TGG | - | chr1.2:8805844-8805863 | None:intergenic | 55.0% | |
| GTGAGGTGAGAGGGGAGAAT+GGG | + | chr1.2:8804727-8804746 | MS.gene33177:CDS | 55.0% | |
| TGAGGTGAGAGGGGAGAATG+GGG | + | chr1.2:8804728-8804747 | MS.gene33177:CDS | 55.0% | |
| TTGCTCTGCAAGTTTCGCCG+AGG | + | chr1.2:8803983-8804002 | MS.gene33177:CDS | 55.0% | |
| ! | ACGAGGGTCTCCTAGCTCTT+GGG | + | chr1.2:8805168-8805187 | MS.gene33177:CDS | 55.0% |
| ! | TACGAGGGTCTCCTAGCTCT+TGG | + | chr1.2:8805167-8805186 | MS.gene33177:CDS | 55.0% |
| !! | CGAAGTTGGCCCTTTTGAGG+AGG | + | chr1.2:8805253-8805272 | MS.gene33177:CDS | 55.0% |
| GGGGAGAATGGGGTTGGAGA+AGG | + | chr1.2:8804738-8804757 | MS.gene33177:CDS | 60.0% | |
| GGTGAGGTGAGAGGGGAGAA+TGG | + | chr1.2:8804726-8804745 | MS.gene33177:CDS | 60.0% | |
| GTGAGAGGGGAGAATGGGGT+TGG | + | chr1.2:8804732-8804751 | MS.gene33177:CDS | 60.0% | |
| TTCCTAAACCGCGCAGCAGG+CGG | - | chr1.2:8804219-8804238 | None:intergenic | 60.0% | |
| ! | GAGGAGGCGAGTGCCTTTTC+AGG | + | chr1.2:8805025-8805044 | MS.gene33177:CDS | 60.0% |
| AAGTAGAGCCGCCTGCTGCG+CGG | + | chr1.2:8804208-8804227 | MS.gene33177:CDS | 65.0% | |
| AGCCGCCTGCTGCGCGGTTT+AGG | + | chr1.2:8804214-8804233 | MS.gene33177:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 8803664 | 8805894 | 8803664 | ID=MS.gene33177 |
| chr1.2 | mRNA | 8803664 | 8805894 | 8803664 | ID=MS.gene33177.t1;Parent=MS.gene33177 |
| chr1.2 | exon | 8803664 | 8805656 | 8803664 | ID=MS.gene33177.t1.exon1;Parent=MS.gene33177.t1 |
| chr1.2 | CDS | 8803664 | 8805656 | 8803664 | ID=cds.MS.gene33177.t1;Parent=MS.gene33177.t1 |
| chr1.2 | exon | 8805758 | 8805894 | 8805758 | ID=MS.gene33177.t1.exon2;Parent=MS.gene33177.t1 |
| chr1.2 | CDS | 8805758 | 8805894 | 8805758 | ID=cds.MS.gene33177.t1;Parent=MS.gene33177.t1 |
| Gene Sequence |
| Protein sequence |
