Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40024.t1 | XP_003590727.2 | 95.8 | 239 | 10 | 0 | 1 | 239 | 1 | 239 | 1.60E-130 | 475.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40024.t1 | Q8RYE9 | 68.2 | 223 | 69 | 1 | 19 | 239 | 23 | 245 | 7.8e-89 | 328.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40024.t1 | G7I2P1 | 95.8 | 239 | 10 | 0 | 1 | 239 | 1 | 239 | 1.2e-130 | 475.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene40024 | 0.802049 | 6.75E-49 | -1.69E-46 |
| MS.gene049171 | MS.gene40024 | 0.833967 | 3.93E-56 | -1.69E-46 |
| MS.gene049217 | MS.gene40024 | 0.840891 | 6.62E-58 | -1.69E-46 |
| MS.gene049222 | MS.gene40024 | 0.863291 | 2.76E-64 | -1.69E-46 |
| MS.gene049232 | MS.gene40024 | 0.818468 | 1.93E-52 | -1.69E-46 |
| MS.gene049285 | MS.gene40024 | 0.831752 | 1.40E-55 | -1.69E-46 |
| MS.gene049320 | MS.gene40024 | 0.813834 | 2.09E-51 | -1.69E-46 |
| MS.gene049609 | MS.gene40024 | 0.822005 | 2.98E-53 | -1.69E-46 |
| MS.gene049627 | MS.gene40024 | 0.83554 | 1.58E-56 | -1.69E-46 |
| MS.gene049633 | MS.gene40024 | 0.844864 | 5.81E-59 | -1.69E-46 |
| MS.gene050163 | MS.gene40024 | 0.82543 | 4.71E-54 | -1.69E-46 |
| MS.gene050165 | MS.gene40024 | 0.823443 | 1.38E-53 | -1.69E-46 |
| MS.gene050170 | MS.gene40024 | 0.805466 | 1.32E-49 | -1.69E-46 |
| MS.gene050323 | MS.gene40024 | 0.812888 | 3.38E-51 | -1.69E-46 |
| MS.gene050504 | MS.gene40024 | 0.834571 | 2.78E-56 | -1.69E-46 |
| MS.gene050518 | MS.gene40024 | 0.842069 | 3.24E-58 | -1.69E-46 |
| MS.gene050538 | MS.gene40024 | 0.806983 | 6.31E-50 | -1.69E-46 |
| MS.gene050577 | MS.gene40024 | 0.832045 | 1.18E-55 | -1.69E-46 |
| MS.gene050612 | MS.gene40024 | 0.805881 | 1.08E-49 | -1.69E-46 |
| MS.gene050675 | MS.gene40024 | 0.802977 | 4.34E-49 | -1.69E-46 |
| MS.gene050699 | MS.gene40024 | 0.810978 | 8.81E-51 | -1.69E-46 |
| MS.gene050747 | MS.gene40024 | 0.847965 | 8.28E-60 | -1.69E-46 |
| MS.gene050772 | MS.gene40024 | 0.833748 | 4.46E-56 | -1.69E-46 |
| MS.gene05080 | MS.gene40024 | 0.836102 | 1.14E-56 | -1.69E-46 |
| MS.gene050868 | MS.gene40024 | 0.83257 | 8.77E-56 | -1.69E-46 |
| MS.gene050871 | MS.gene40024 | 0.831699 | 1.44E-55 | -1.69E-46 |
| MS.gene050904 | MS.gene40024 | 0.824003 | 1.02E-53 | -1.69E-46 |
| MS.gene050950 | MS.gene40024 | 0.840864 | 6.73E-58 | -1.69E-46 |
| MS.gene051317 | MS.gene40024 | 0.80777 | 4.30E-50 | -1.69E-46 |
| MS.gene051666 | MS.gene40024 | 0.838551 | 2.69E-57 | -1.69E-46 |
| MS.gene051694 | MS.gene40024 | 0.823037 | 1.72E-53 | -1.69E-46 |
| MS.gene051734 | MS.gene40024 | 0.803399 | 3.55E-49 | -1.69E-46 |
| MS.gene051838 | MS.gene40024 | 0.815986 | 6.98E-52 | -1.69E-46 |
| MS.gene051858 | MS.gene40024 | 0.835849 | 1.32E-56 | -1.69E-46 |
| MS.gene052164 | MS.gene40024 | 0.846793 | 1.74E-59 | -1.69E-46 |
| MS.gene052482 | MS.gene40024 | 0.80392 | 2.77E-49 | -1.69E-46 |
| MS.gene052486 | MS.gene40024 | 0.826691 | 2.36E-54 | -1.69E-46 |
| MS.gene052503 | MS.gene40024 | 0.809276 | 2.05E-50 | -1.69E-46 |
| MS.gene052615 | MS.gene40024 | 0.805189 | 1.51E-49 | -1.69E-46 |
| MS.gene052825 | MS.gene40024 | 0.80824 | 3.41E-50 | -1.69E-46 |
| MS.gene052966 | MS.gene40024 | 0.843165 | 1.66E-58 | -1.69E-46 |
| MS.gene053203 | MS.gene40024 | 0.855321 | 6.82E-62 | -1.69E-46 |
| MS.gene053207 | MS.gene40024 | 0.822748 | 2.01E-53 | -1.69E-46 |
| MS.gene053213 | MS.gene40024 | 0.818268 | 2.14E-52 | -1.69E-46 |
| MS.gene053286 | MS.gene40024 | 0.813232 | 2.84E-51 | -1.69E-46 |
| MS.gene053574 | MS.gene40024 | 0.833011 | 6.81E-56 | -1.69E-46 |
| MS.gene053626 | MS.gene40024 | 0.807594 | 4.68E-50 | -1.69E-46 |
| MS.gene053632 | MS.gene40024 | 0.814447 | 1.53E-51 | -1.69E-46 |
| MS.gene053633 | MS.gene40024 | 0.802376 | 5.78E-49 | -1.69E-46 |
| MS.gene053824 | MS.gene40024 | 0.819295 | 1.25E-52 | -1.69E-46 |
| MS.gene054408 | MS.gene40024 | 0.803522 | 3.35E-49 | -1.69E-46 |
| MS.gene054595 | MS.gene40024 | 0.80102 | 1.10E-48 | -1.69E-46 |
| MS.gene054600 | MS.gene40024 | 0.833404 | 5.44E-56 | -1.69E-46 |
| MS.gene054642 | MS.gene40024 | 0.821971 | 3.04E-53 | -1.69E-46 |
| MS.gene05470 | MS.gene40024 | 0.825718 | 4.02E-54 | -1.69E-46 |
| MS.gene054927 | MS.gene40024 | 0.836803 | 7.55E-57 | -1.69E-46 |
| MS.gene054954 | MS.gene40024 | 0.815361 | 9.62E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene40024 | 0.816075 | 6.67E-52 | -1.69E-46 |
| MS.gene055502 | MS.gene40024 | 0.831317 | 1.79E-55 | -1.69E-46 |
| MS.gene055577 | MS.gene40024 | 0.860248 | 2.36E-63 | -1.69E-46 |
| MS.gene055722 | MS.gene40024 | 0.836208 | 1.07E-56 | -1.69E-46 |
| MS.gene055748 | MS.gene40024 | 0.807074 | 6.04E-50 | -1.69E-46 |
| MS.gene055751 | MS.gene40024 | 0.800594 | 1.34E-48 | -1.69E-46 |
| MS.gene05589 | MS.gene40024 | 0.81695 | 4.25E-52 | -1.69E-46 |
| MS.gene055941 | MS.gene40024 | 0.827344 | 1.65E-54 | -1.69E-46 |
| MS.gene056083 | MS.gene40024 | 0.813682 | 2.26E-51 | -1.69E-46 |
| MS.gene056166 | MS.gene40024 | 0.808954 | 2.40E-50 | -1.69E-46 |
| MS.gene056409 | MS.gene40024 | 0.809122 | 2.21E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene40024 | 0.814012 | 1.91E-51 | -1.69E-46 |
| MS.gene056510 | MS.gene40024 | 0.84438 | 7.84E-59 | -1.69E-46 |
| MS.gene056549 | MS.gene40024 | 0.811968 | 5.37E-51 | -1.69E-46 |
| MS.gene056610 | MS.gene40024 | 0.813049 | 3.12E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene40024 | 0.820366 | 7.13E-53 | -1.69E-46 |
| MS.gene056692 | MS.gene40024 | 0.807027 | 6.18E-50 | -1.69E-46 |
| MS.gene057416 | MS.gene40024 | 0.808239 | 3.42E-50 | -1.69E-46 |
| MS.gene057658 | MS.gene40024 | 0.800858 | 1.18E-48 | -1.69E-46 |
| MS.gene057831 | MS.gene40024 | 0.840996 | 6.21E-58 | -1.69E-46 |
| MS.gene05837 | MS.gene40024 | 0.815453 | 9.17E-52 | -1.69E-46 |
| MS.gene058419 | MS.gene40024 | 0.831875 | 1.30E-55 | -1.69E-46 |
| MS.gene058544 | MS.gene40024 | 0.81459 | 1.43E-51 | -1.69E-46 |
| MS.gene058773 | MS.gene40024 | 0.833457 | 5.28E-56 | -1.69E-46 |
| MS.gene058838 | MS.gene40024 | 0.811904 | 5.54E-51 | -1.69E-46 |
| MS.gene05883 | MS.gene40024 | 0.809723 | 1.64E-50 | -1.69E-46 |
| MS.gene059022 | MS.gene40024 | 0.812008 | 5.26E-51 | -1.69E-46 |
| MS.gene059023 | MS.gene40024 | 0.846468 | 2.13E-59 | -1.69E-46 |
| MS.gene05934 | MS.gene40024 | 0.832705 | 8.12E-56 | -1.69E-46 |
| MS.gene059677 | MS.gene40024 | 0.825305 | 5.04E-54 | -1.69E-46 |
| MS.gene059718 | MS.gene40024 | 0.853479 | 2.33E-61 | -1.69E-46 |
| MS.gene059756 | MS.gene40024 | 0.80701 | 6.23E-50 | -1.69E-46 |
| MS.gene059801 | MS.gene40024 | 0.824964 | 6.07E-54 | -1.69E-46 |
| MS.gene059865 | MS.gene40024 | 0.821632 | 3.64E-53 | -1.69E-46 |
| MS.gene059902 | MS.gene40024 | 0.835844 | 1.32E-56 | -1.69E-46 |
| MS.gene060482 | MS.gene40024 | 0.810996 | 8.73E-51 | -1.69E-46 |
| MS.gene060703 | MS.gene40024 | 0.815473 | 9.08E-52 | -1.69E-46 |
| MS.gene060762 | MS.gene40024 | 0.859349 | 4.40E-63 | -1.69E-46 |
| MS.gene06077 | MS.gene40024 | 0.819573 | 1.08E-52 | -1.69E-46 |
| MS.gene06092 | MS.gene40024 | 0.827448 | 1.56E-54 | -1.69E-46 |
| MS.gene060982 | MS.gene40024 | 0.830951 | 2.20E-55 | -1.69E-46 |
| MS.gene061150 | MS.gene40024 | 0.830957 | 2.19E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40024.t1 | MTR_1g073140 | 95.816 | 239 | 10 | 0 | 1 | 239 | 1 | 239 | 1.12e-174 | 479 |
| MS.gene40024.t1 | MTR_1g073140 | 92.340 | 235 | 16 | 1 | 1 | 235 | 1 | 233 | 2.20e-162 | 449 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40024.t1 | AT2G33255 | 68.161 | 223 | 69 | 1 | 19 | 239 | 23 | 245 | 1.25e-115 | 331 |
Find 59 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCACTTACATCATCTTTA+AGG | 0.144402 | 1.4:-59729583 | None:intergenic |
| ATTTATTCCACCAACGCTTT+GGG | 0.274021 | 1.4:+59728375 | MS.gene40024:CDS |
| GAAATCGACATTAGCATATT+CGG | 0.286039 | 1.4:-59730195 | None:intergenic |
| TTCTTGATTCAAAGAAAATT+AGG | 0.286367 | 1.4:+59728315 | MS.gene40024:CDS |
| TACTGCATATCTGTTCTCTT+TGG | 0.304882 | 1.4:+59729522 | MS.gene40024:CDS |
| ATTTACTACCAGGCATGATT+TGG | 0.318202 | 1.4:-59728203 | None:intergenic |
| GATTTATTCCACCAACGCTT+TGG | 0.319915 | 1.4:+59728374 | MS.gene40024:CDS |
| GACGCCACGGAGGCGCGTTT+TGG | 0.336627 | 1.4:-59727968 | None:intergenic |
| ACTGCATATCTGTTCTCTTT+GGG | 0.358743 | 1.4:+59729523 | MS.gene40024:CDS |
| AAAATGAGCAATGGTATCAT+AGG | 0.361847 | 1.4:-59728157 | None:intergenic |
| CCGACCATTACTACTTCATT+TGG | 0.368014 | 1.4:-59729554 | None:intergenic |
| AGGGAAGTTACCTTGAAATC+TGG | 0.368119 | 1.4:-59730221 | None:intergenic |
| AAATCGACATTAGCATATTC+GGG | 0.370379 | 1.4:-59730194 | None:intergenic |
| GGAGCTGGATCAGGTTTATA+AGG | 0.385703 | 1.4:-59729497 | None:intergenic |
| CGATTTCAAACCAGATTTCA+AGG | 0.418712 | 1.4:+59730211 | MS.gene40024:CDS |
| ACTTGTCTGCTTGATCAAAC+TGG | 0.423784 | 1.4:+59730158 | MS.gene40024:CDS |
| ATTGCTTGTGGAGGGCGAGC+AGG | 0.444789 | 1.4:+59730128 | MS.gene40024:CDS |
| TTAGGAGGGGTTTGATTACA+AGG | 0.448691 | 1.4:+59728333 | MS.gene40024:CDS |
| CAAATGAAGTAGTAATGGTC+GGG | 0.454036 | 1.4:+59729555 | MS.gene40024:CDS |
| TGCAGTAGTGGAGCTGGATC+AGG | 0.459438 | 1.4:-59729506 | None:intergenic |
| ATCGATTCCAGCAGGGTTTG+AGG | 0.464862 | 1.4:-59728088 | None:intergenic |
| TTCAAGATATCGATTCCAGC+AGG | 0.477823 | 1.4:-59728096 | None:intergenic |
| AACTGACCCCAAAGCGTTGG+TGG | 0.483746 | 1.4:-59728382 | None:intergenic |
| CAGATATGCAGTAGTGGAGC+TGG | 0.491301 | 1.4:-59729512 | None:intergenic |
| CGAAATTCCCTGCTTAATGC+TGG | 0.499413 | 1.4:-59729473 | None:intergenic |
| TACTACCAGGCATGATTTGG+AGG | 0.499592 | 1.4:-59728200 | None:intergenic |
| GCCGAGTACTGCTTTGTACA+TGG | 0.510991 | 1.4:-59728040 | None:intergenic |
| GTCAAAGCCTCAAACCCTGC+TGG | 0.521374 | 1.4:+59728081 | MS.gene40024:CDS |
| ACATGGTGCGTGGGAAGAGA+AGG | 0.533604 | 1.4:-59727930 | None:intergenic |
| GAGCAATGGTATCATAGGCT+TGG | 0.543525 | 1.4:-59728152 | None:intergenic |
| TTGATTCAAAGAAAATTAGG+AGG | 0.544314 | 1.4:+59728318 | MS.gene40024:CDS |
| TCTTGAAACTCATTGATCAC+TGG | 0.545427 | 1.4:+59728112 | MS.gene40024:CDS |
| TCAACCAAATGAAGTAGTAA+TGG | 0.553506 | 1.4:+59729550 | MS.gene40024:CDS |
| GATCACCTCCAAATCATGCC+TGG | 0.556305 | 1.4:+59728195 | MS.gene40024:CDS |
| AGGGAAATCAATGACGGGGA+CGG | 0.561282 | 1.4:-59728016 | None:intergenic |
| TCCATGTACAAAGCAGTACT+CGG | 0.569767 | 1.4:+59728039 | MS.gene40024:CDS |
| ATGGAAGGGAAATCAATGAC+GGG | 0.572088 | 1.4:-59728021 | None:intergenic |
| AGTACTGCTTTGTACATGGA+AGG | 0.576818 | 1.4:-59728036 | None:intergenic |
| CCAAATGAAGTAGTAATGGT+CGG | 0.579295 | 1.4:+59729554 | MS.gene40024:CDS |
| TAGGCTTGGCGTTGTTGATG+TGG | 0.585097 | 1.4:-59728138 | None:intergenic |
| AGAGAACAGATATGCAGTAG+TGG | 0.586307 | 1.4:-59729518 | None:intergenic |
| GGTGGTTAAGTGTGATGACA+TGG | 0.587907 | 1.4:-59727947 | None:intergenic |
| TGATTCAAAGAAAATTAGGA+GGG | 0.590623 | 1.4:+59728319 | MS.gene40024:CDS |
| AAATGAAGTAGTAATGGTCG+GGG | 0.605638 | 1.4:+59729556 | MS.gene40024:CDS |
| AATTGAGTAAACTTCAGAGA+GGG | 0.606847 | 1.4:-59730240 | None:intergenic |
| GATTCAAAGAAAATTAGGAG+GGG | 0.613293 | 1.4:+59728320 | MS.gene40024:CDS |
| CATGGAAGGGAAATCAATGA+CGG | 0.615972 | 1.4:-59728022 | None:intergenic |
| TTTATTCCACCAACGCTTTG+GGG | 0.616024 | 1.4:+59728376 | MS.gene40024:CDS |
| TAAAACTGACCCCAAAGCGT+TGG | 0.618013 | 1.4:-59728385 | None:intergenic |
| GTCTGCTTGATCAAACTGGA+AGG | 0.626822 | 1.4:+59730162 | MS.gene40024:CDS |
| AAGTGTGATGACATGGTGCG+TGG | 0.628658 | 1.4:-59727940 | None:intergenic |
| TCAAGATATCGATTCCAGCA+GGG | 0.632481 | 1.4:-59728095 | None:intergenic |
| ACCACCAAAACGCGCCTCCG+TGG | 0.633706 | 1.4:+59727964 | MS.gene40024:CDS |
| GTACTGCTTTGTACATGGAA+GGG | 0.645077 | 1.4:-59728035 | None:intergenic |
| CCATGTCGAAAACGACGCCA+CGG | 0.669079 | 1.4:-59727981 | None:intergenic |
| AGTGTGATGACATGGTGCGT+GGG | 0.699733 | 1.4:-59727939 | None:intergenic |
| TGTCGAAAACGACGCCACGG+AGG | 0.727352 | 1.4:-59727978 | None:intergenic |
| TGGAAGGGAAATCAATGACG+GGG | 0.729656 | 1.4:-59728020 | None:intergenic |
| GAATTGAGTAAACTTCAGAG+AGG | 0.733429 | 1.4:-59730241 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTACTTTTTTATTATATT+AGG | + | chr1.4:59728245-59728264 | MS.gene40024:intron | 10.0% |
| !! | ATTGAATATGAACAAATAAA+AGG | - | chr1.4:59729340-59729359 | None:intergenic | 15.0% |
| !!! | TGATTTTTTCAAATTATTAG+CGG | + | chr1.4:59728538-59728557 | MS.gene40024:intron | 15.0% |
| !!! | TTACTTTTCTTTCTTATATT+TGG | + | chr1.4:59728405-59728424 | MS.gene40024:intron | 15.0% |
| !!! | TTTTATTTGTTCATATTCAA+TGG | + | chr1.4:59729339-59729358 | MS.gene40024:intron | 15.0% |
| !! | AATATGAACAAATAAAAGGA+GGG | - | chr1.4:59729336-59729355 | None:intergenic | 20.0% |
| !! | AGAGCATGTTTATAAAAAAA+AGG | - | chr1.4:59728799-59728818 | None:intergenic | 20.0% |
| !! | GAACATTCAATCAAATTAAT+GGG | - | chr1.4:59729614-59729633 | None:intergenic | 20.0% |
| !! | GAGCATGTTTATAAAAAAAA+GGG | - | chr1.4:59728798-59728817 | None:intergenic | 20.0% |
| !! | TCAATTTACATTACACAATT+GGG | + | chr1.4:59728430-59728449 | MS.gene40024:intron | 20.0% |
| !! | TGAACATTCAATCAAATTAA+TGG | - | chr1.4:59729615-59729634 | None:intergenic | 20.0% |
| !! | TTCTTGATTCAAAGAAAATT+AGG | + | chr1.4:59728315-59728334 | MS.gene40024:CDS | 20.0% |
| !! | TTGAATGTTCATGATTTATA+TGG | + | chr1.4:59729624-59729643 | MS.gene40024:intron | 20.0% |
| !! | TTTCTCAAAGATTAACAAAA+TGG | - | chr1.4:59728909-59728928 | None:intergenic | 20.0% |
| !!! | GATTTTATTCTATCTTGTTA+TGG | - | chr1.4:59729060-59729079 | None:intergenic | 20.0% |
| !!! | TTGTTTGAATTGACTTATTT+AGG | - | chr1.4:59729231-59729250 | None:intergenic | 20.0% |
| ! | AATTCAAACAAACCCTTAAA+AGG | + | chr1.4:59729240-59729259 | MS.gene40024:intron | 25.0% |
| ! | AATTGAAACGGTTAAAGTTA+TGG | - | chr1.4:59729893-59729912 | None:intergenic | 25.0% |
| ! | AGAAACAATTGTAAAATCGA+AGG | + | chr1.4:59729689-59729708 | MS.gene40024:intron | 25.0% |
| ! | ATATGAACAAATAAAAGGAG+GGG | - | chr1.4:59729335-59729354 | None:intergenic | 25.0% |
| ! | ATTGAAACGGTTAAAGTTAT+GGG | - | chr1.4:59729892-59729911 | None:intergenic | 25.0% |
| ! | CTCAATTTACATTACACAAT+TGG | + | chr1.4:59728429-59728448 | MS.gene40024:intron | 25.0% |
| ! | GAATATGAACAAATAAAAGG+AGG | - | chr1.4:59729337-59729356 | None:intergenic | 25.0% |
| ! | GAGAAAACAAAATCAGTAAA+AGG | + | chr1.4:59728923-59728942 | MS.gene40024:intron | 25.0% |
| ! | GCATAATAAATTGAACTAAC+AGG | + | chr1.4:59729295-59729314 | MS.gene40024:intron | 25.0% |
| ! | GGAGTTAAATCTATAAAGTT+TGG | + | chr1.4:59728871-59728890 | MS.gene40024:intron | 25.0% |
| ! | TAAGTGGCATAAAATTGAAA+CGG | - | chr1.4:59729905-59729924 | None:intergenic | 25.0% |
| ! | TACAAAAGAAGAAGAAAAGT+AGG | - | chr1.4:59728230-59728249 | None:intergenic | 25.0% |
| ! | TCTTCACAATCATAAATAAG+TGG | + | chr1.4:59729961-59729980 | MS.gene40024:intron | 25.0% |
| ! | TGAATCAACAAATATTTCGT+TGG | - | chr1.4:59730049-59730068 | None:intergenic | 25.0% |
| ! | TGATTAATTAATTATGCTGC+AGG | + | chr1.4:59728272-59728291 | MS.gene40024:intron | 25.0% |
| ! | TGATTCAAAGAAAATTAGGA+GGG | + | chr1.4:59728319-59728338 | MS.gene40024:CDS | 25.0% |
| ! | TGTTATCAAGTTACTACTAT+TGG | + | chr1.4:59728831-59728850 | MS.gene40024:intron | 25.0% |
| ! | TTCATTGTAATTATGTGTGT+CGG | - | chr1.4:59728513-59728532 | None:intergenic | 25.0% |
| ! | TTGATTCAAAGAAAATTAGG+AGG | + | chr1.4:59728318-59728337 | MS.gene40024:CDS | 25.0% |
| !! | GACAACTGAGTAATTTTATA+TGG | + | chr1.4:59728967-59728986 | MS.gene40024:intron | 25.0% |
| !! | TCTTGAGACAAATTTTGAAT+TGG | + | chr1.4:59730262-59730281 | MS.gene40024:CDS | 25.0% |
| !!! | AGATGTTCATAAGTTGTTTT+CGG | - | chr1.4:59729148-59729167 | None:intergenic | 25.0% |
| !!! | TTTGTTGATTCAGATGTATT+TGG | + | chr1.4:59730057-59730076 | MS.gene40024:intron | 25.0% |
| !!! | TTTTATGCCACTTATAATAC+CGG | + | chr1.4:59729911-59729930 | MS.gene40024:intron | 25.0% |
| AAAAGTAGGTATTTACTACC+AGG | - | chr1.4:59728216-59728235 | None:intergenic | 30.0% | |
| AAAATGAGCAATGGTATCAT+AGG | - | chr1.4:59728160-59728179 | None:intergenic | 30.0% | |
| AAATCGACATTAGCATATTC+GGG | - | chr1.4:59730197-59730216 | None:intergenic | 30.0% | |
| AACCACTTACATCATCTTTA+AGG | - | chr1.4:59729586-59729605 | None:intergenic | 30.0% | |
| AAGCCAATGTTGTTAAATAG+CGG | - | chr1.4:59728687-59728706 | None:intergenic | 30.0% | |
| AATTGAGTAAACTTCAGAGA+GGG | - | chr1.4:59730243-59730262 | None:intergenic | 30.0% | |
| ATACCAAAATGCATAGTGAA+AGG | - | chr1.4:59729866-59729885 | None:intergenic | 30.0% | |
| ATACTGTTTGAGAAAGCTTA+TGG | - | chr1.4:59729183-59729202 | None:intergenic | 30.0% | |
| ATATTCAATGGTTCATCGTA+TGG | + | chr1.4:59729351-59729370 | MS.gene40024:intron | 30.0% | |
| ATTATGCCTCCAATAGAATT+GGG | - | chr1.4:59729282-59729301 | None:intergenic | 30.0% | |
| ATTGGCTGTAGTTTCAATAT+TGG | + | chr1.4:59728849-59728868 | MS.gene40024:intron | 30.0% | |
| CATTATTGTCATGTCAACAA+AGG | + | chr1.4:59728739-59728758 | MS.gene40024:intron | 30.0% | |
| GAAATCGACATTAGCATATT+CGG | - | chr1.4:59730198-59730217 | None:intergenic | 30.0% | |
| GATTCAAAGAAAATTAGGAG+GGG | + | chr1.4:59728320-59728339 | MS.gene40024:CDS | 30.0% | |
| TATTATGCCTCCAATAGAAT+TGG | - | chr1.4:59729283-59729302 | None:intergenic | 30.0% | |
| TCAACCAAATGAAGTAGTAA+TGG | + | chr1.4:59729550-59729569 | MS.gene40024:CDS | 30.0% | |
| TGGAAAATATGTGCATAGAA+TGG | - | chr1.4:59730029-59730048 | None:intergenic | 30.0% | |
| TTGGCTGTAGTTTCAATATT+GGG | + | chr1.4:59728850-59728869 | MS.gene40024:intron | 30.0% | |
| TTTACAAGCAATCACACTAT+GGG | - | chr1.4:59729825-59729844 | None:intergenic | 30.0% | |
| TTTACATTACACAATTGGGT+TGG | + | chr1.4:59728434-59728453 | MS.gene40024:intron | 30.0% | |
| TTTCAAATTATTAGCGGTGT+CGG | + | chr1.4:59728544-59728563 | MS.gene40024:intron | 30.0% | |
| TTTCACAACAAAATCCAGAA+AGG | + | chr1.4:59729735-59729754 | MS.gene40024:intron | 30.0% | |
| ! | AAAAGCAGATGAACCTTTTA+AGG | - | chr1.4:59729256-59729275 | None:intergenic | 30.0% |
| ! | AAAGCAGATGAACCTTTTAA+GGG | - | chr1.4:59729255-59729274 | None:intergenic | 30.0% |
| ! | ATTGAACTAACAGGTTTTTC+TGG | + | chr1.4:59729304-59729323 | MS.gene40024:intron | 30.0% |
| ! | GATTCAGATGTATTTGGAAT+TGG | + | chr1.4:59730063-59730082 | MS.gene40024:intron | 30.0% |
| ! | GTCTACTAGTTAGAACTTTT+AGG | - | chr1.4:59729762-59729781 | None:intergenic | 30.0% |
| ! | TTTTACAAGCAATCACACTA+TGG | - | chr1.4:59729826-59729845 | None:intergenic | 30.0% |
| ! | TTTTTACCCAATTCTATTGG+AGG | + | chr1.4:59729273-59729292 | MS.gene40024:intron | 30.0% |
| !! | CATTGCTCATTTTGAAAAAC+AGG | + | chr1.4:59728167-59728186 | MS.gene40024:CDS | 30.0% |
| !! | CTGTTTTTCAAAATGAGCAA+TGG | - | chr1.4:59728169-59728188 | None:intergenic | 30.0% |
| !! | TTGATTTGCAATAAGGATGA+GGG | + | chr1.4:59729937-59729956 | MS.gene40024:intron | 30.0% |
| !! | TTTGATTTGCAATAAGGATG+AGG | + | chr1.4:59729936-59729955 | MS.gene40024:intron | 30.0% |
| !!! | GCTTTTTTACCCAATTCTAT+TGG | + | chr1.4:59729270-59729289 | MS.gene40024:intron | 30.0% |
| AAATGAAGTAGTAATGGTCG+GGG | + | chr1.4:59729556-59729575 | MS.gene40024:CDS | 35.0% | |
| ACAACACTGAATATGAAGCA+CGG | - | chr1.4:59728593-59728612 | None:intergenic | 35.0% | |
| ACTGCATATCTGTTCTCTTT+GGG | + | chr1.4:59729523-59729542 | MS.gene40024:CDS | 35.0% | |
| AGCCTTAAAGATGATGTAAG+TGG | + | chr1.4:59729581-59729600 | MS.gene40024:intron | 35.0% | |
| ATTTACTACCAGGCATGATT+TGG | - | chr1.4:59728206-59728225 | None:intergenic | 35.0% | |
| ATTTATTCCACCAACGCTTT+GGG | + | chr1.4:59728375-59728394 | MS.gene40024:CDS | 35.0% | |
| CAAATGAAGTAGTAATGGTC+GGG | + | chr1.4:59729555-59729574 | MS.gene40024:CDS | 35.0% | |
| CATGTCAACAAAGGTTTGTA+TGG | + | chr1.4:59728748-59728767 | MS.gene40024:intron | 35.0% | |
| CCAAATGAAGTAGTAATGGT+CGG | + | chr1.4:59729554-59729573 | MS.gene40024:CDS | 35.0% | |
| CCTTATTGCAAATCAAATGC+CGG | - | chr1.4:59729933-59729952 | None:intergenic | 35.0% | |
| CGATTTCAAACCAGATTTCA+AGG | + | chr1.4:59730211-59730230 | MS.gene40024:CDS | 35.0% | |
| GAAAGATATTGCTTCAAGCT+GGG | - | chr1.4:59730007-59730026 | None:intergenic | 35.0% | |
| GAATTGAGTAAACTTCAGAG+AGG | - | chr1.4:59730244-59730263 | None:intergenic | 35.0% | |
| GATTGTTCATTTGTACCCAA+AGG | - | chr1.4:59729666-59729685 | None:intergenic | 35.0% | |
| GCACAGATTGCAAAAAATAG+TGG | + | chr1.4:59728616-59728635 | MS.gene40024:intron | 35.0% | |
| TACTGCATATCTGTTCTCTT+TGG | + | chr1.4:59729522-59729541 | MS.gene40024:CDS | 35.0% | |
| TAGCCGCTATTTAACAACAT+TGG | + | chr1.4:59728681-59728700 | MS.gene40024:intron | 35.0% | |
| TCAAATGCCGGTATTATAAG+TGG | - | chr1.4:59729921-59729940 | None:intergenic | 35.0% | |
| TCTTGAAACTCATTGATCAC+TGG | + | chr1.4:59728112-59728131 | MS.gene40024:CDS | 35.0% | |
| TGTAAAAGAACCCTATGACT+CGG | + | chr1.4:59729839-59729858 | MS.gene40024:intron | 35.0% | |
| ! | AAGCTATCTTAGAGAGCTTT+TGG | + | chr1.4:59729115-59729134 | MS.gene40024:intron | 35.0% |
| ! | ATTTTCTCCAGCATTAAGCA+GGG | + | chr1.4:59729466-59729485 | MS.gene40024:CDS | 35.0% |
| ! | CAGATGTATTTGGAATTGGA+TGG | + | chr1.4:59730067-59730086 | MS.gene40024:intron | 35.0% |
| ! | GCTATTTAACAACATTGGCT+TGG | + | chr1.4:59728686-59728705 | MS.gene40024:intron | 35.0% |
| ! | GTAAAAGGAATTTGAGACTG+TGG | + | chr1.4:59728938-59728957 | MS.gene40024:intron | 35.0% |
| !! | TAGAACTTTTAGGTCCTTTC+TGG | - | chr1.4:59729752-59729771 | None:intergenic | 35.0% |
| AAATGTAATCTGCAGCAACG+AGG | - | chr1.4:59729450-59729469 | None:intergenic | 40.0% | |
| AAGCCATAATTGTCCACCTT+TGG | + | chr1.4:59729647-59729666 | MS.gene40024:intron | 40.0% | |
| AATGGTTCATCGTATGGTGA+AGG | + | chr1.4:59729357-59729376 | MS.gene40024:intron | 40.0% | |
| ACTTGTCTGCTTGATCAAAC+TGG | + | chr1.4:59730158-59730177 | MS.gene40024:CDS | 40.0% | |
| AGAGAACAGATATGCAGTAG+TGG | - | chr1.4:59729521-59729540 | None:intergenic | 40.0% | |
| AGCCATAATTGTCCACCTTT+GGG | + | chr1.4:59729648-59729667 | MS.gene40024:intron | 40.0% | |
| AGGGAAGTTACCTTGAAATC+TGG | - | chr1.4:59730224-59730243 | None:intergenic | 40.0% | |
| AGTACTGCTTTGTACATGGA+AGG | - | chr1.4:59728039-59728058 | None:intergenic | 40.0% | |
| ATAAATAAGTGGCCTGCACA+GGG | + | chr1.4:59729972-59729991 | MS.gene40024:intron | 40.0% | |
| ATGGAAGGGAAATCAATGAC+GGG | - | chr1.4:59728024-59728043 | None:intergenic | 40.0% | |
| CATGGAAGGGAAATCAATGA+CGG | - | chr1.4:59728025-59728044 | None:intergenic | 40.0% | |
| CCGACCATTACTACTTCATT+TGG | - | chr1.4:59729557-59729576 | None:intergenic | 40.0% | |
| CTGAATATGAAGCACGGATA+CGG | - | chr1.4:59728587-59728606 | None:intergenic | 40.0% | |
| GATTTATTCCACCAACGCTT+TGG | + | chr1.4:59728374-59728393 | MS.gene40024:CDS | 40.0% | |
| GGAAAGATATTGCTTCAAGC+TGG | - | chr1.4:59730008-59730027 | None:intergenic | 40.0% | |
| GTACTGCTTTGTACATGGAA+GGG | - | chr1.4:59728038-59728057 | None:intergenic | 40.0% | |
| TACCCAAAGGTGGACAATTA+TGG | - | chr1.4:59729653-59729672 | None:intergenic | 40.0% | |
| TCCACAAGCAATCTGCAAAA+TGG | - | chr1.4:59730120-59730139 | None:intergenic | 40.0% | |
| TCCATGTACAAAGCAGTACT+CGG | + | chr1.4:59728039-59728058 | MS.gene40024:CDS | 40.0% | |
| TGTTCATTTGTACCCAAAGG+TGG | - | chr1.4:59729663-59729682 | None:intergenic | 40.0% | |
| TTAGGAGGGGTTTGATTACA+AGG | + | chr1.4:59728333-59728352 | MS.gene40024:CDS | 40.0% | |
| TTTATTCCACCAACGCTTTG+GGG | + | chr1.4:59728376-59728395 | MS.gene40024:CDS | 40.0% | |
| ! | ACCATTTTGCAGATTGCTTG+TGG | + | chr1.4:59730116-59730135 | MS.gene40024:intron | 40.0% |
| ! | ATTTTGCAGATTGCTTGTGG+AGG | + | chr1.4:59730119-59730138 | MS.gene40024:intron | 40.0% |
| ! | CATTTTCTCCAGCATTAAGC+AGG | + | chr1.4:59729465-59729484 | MS.gene40024:CDS | 40.0% |
| ! | GAAGAGAAGGAAAGCTTTTG+CGG | - | chr1.4:59727920-59727939 | None:intergenic | 40.0% |
| ! | GAATTTGAGACTGTGGCATT+TGG | + | chr1.4:59728945-59728964 | MS.gene40024:intron | 40.0% |
| ! | GGTCCTTTCACTATGCATTT+TGG | + | chr1.4:59729860-59729879 | MS.gene40024:intron | 40.0% |
| ! | GTAATTATGTGTGTCGGTGT+CGG | - | chr1.4:59728507-59728526 | None:intergenic | 40.0% |
| ! | TTTTGCAGATTGCTTGTGGA+GGG | + | chr1.4:59730120-59730139 | MS.gene40024:intron | 40.0% |
| !! | CCGGCATTTGATTTGCAATA+AGG | + | chr1.4:59729930-59729949 | MS.gene40024:intron | 40.0% |
| !! | TCAAGATATCGATTCCAGCA+GGG | - | chr1.4:59728098-59728117 | None:intergenic | 40.0% |
| !! | TTCAAGATATCGATTCCAGC+AGG | - | chr1.4:59728099-59728118 | None:intergenic | 40.0% |
| AGTGAAAGGACCGAGTCATA+GGG | - | chr1.4:59729852-59729871 | None:intergenic | 45.0% | |
| ATGAAGCACGGATACGGATA+CGG | - | chr1.4:59728581-59728600 | None:intergenic | 45.0% | |
| CATAAATAAGTGGCCTGCAC+AGG | + | chr1.4:59729971-59729990 | MS.gene40024:intron | 45.0% | |
| CGAAATTCCCTGCTTAATGC+TGG | - | chr1.4:59729476-59729495 | None:intergenic | 45.0% | |
| GAGCAATGGTATCATAGGCT+TGG | - | chr1.4:59728155-59728174 | None:intergenic | 45.0% | |
| GGACACGGACAACTAATTTG+AGG | - | chr1.4:59728486-59728505 | None:intergenic | 45.0% | |
| GGAGCTGGATCAGGTTTATA+AGG | - | chr1.4:59729500-59729519 | None:intergenic | 45.0% | |
| GGTGGTTAAGTGTGATGACA+TGG | - | chr1.4:59727950-59727969 | None:intergenic | 45.0% | |
| GTCTGCTTGATCAAACTGGA+AGG | + | chr1.4:59730162-59730181 | MS.gene40024:CDS | 45.0% | |
| TAAAACTGACCCCAAAGCGT+TGG | - | chr1.4:59728388-59728407 | None:intergenic | 45.0% | |
| TAGTGAAAGGACCGAGTCAT+AGG | - | chr1.4:59729853-59729872 | None:intergenic | 45.0% | |
| TGGAAGGGAAATCAATGACG+GGG | - | chr1.4:59728023-59728042 | None:intergenic | 45.0% | |
| ! | TACTACCAGGCATGATTTGG+AGG | - | chr1.4:59728203-59728222 | None:intergenic | 45.0% |
| AAGTGTGATGACATGGTGCG+TGG | - | chr1.4:59727943-59727962 | None:intergenic | 50.0% | |
| AGTGTGATGACATGGTGCGT+GGG | - | chr1.4:59727942-59727961 | None:intergenic | 50.0% | |
| GATCACCTCCAAATCATGCC+TGG | + | chr1.4:59728195-59728214 | MS.gene40024:CDS | 50.0% | |
| TAGGCTTGGCGTTGTTGATG+TGG | - | chr1.4:59728141-59728160 | None:intergenic | 50.0% | |
| ! | AGGGAAATCAATGACGGGGA+CGG | - | chr1.4:59728019-59728038 | None:intergenic | 50.0% |
| ! | ATCGATTCCAGCAGGGTTTG+AGG | - | chr1.4:59728091-59728110 | None:intergenic | 50.0% |
| ! | CAGATATGCAGTAGTGGAGC+TGG | - | chr1.4:59729515-59729534 | None:intergenic | 50.0% |
| ! | GCCGAGTACTGCTTTGTACA+TGG | - | chr1.4:59728043-59728062 | None:intergenic | 50.0% |
| ! | GCTTTTGCGGAAGAGAGCAA+TGG | - | chr1.4:59727907-59727926 | None:intergenic | 50.0% |
| ACATGGTGCGTGGGAAGAGA+AGG | - | chr1.4:59727933-59727952 | None:intergenic | 55.0% | |
| CCATGTCGAAAACGACGCCA+CGG | - | chr1.4:59727984-59728003 | None:intergenic | 55.0% | |
| GGGTTGAAGTTACCCTGTGC+AGG | - | chr1.4:59729987-59730006 | None:intergenic | 55.0% | |
| GTCAAAGCCTCAAACCCTGC+TGG | + | chr1.4:59728081-59728100 | MS.gene40024:CDS | 55.0% | |
| ! | TGCAGTAGTGGAGCTGGATC+AGG | - | chr1.4:59729509-59729528 | None:intergenic | 55.0% |
| !! | AACTGACCCCAAAGCGTTGG+TGG | - | chr1.4:59728385-59728404 | None:intergenic | 55.0% |
| !! | ATGTGTGTCGGTGTCGGACA+CGG | - | chr1.4:59728501-59728520 | None:intergenic | 55.0% |
| !! | GGCGTCGTTTTCGACATGGA+CGG | + | chr1.4:59727985-59728004 | MS.gene40024:CDS | 55.0% |
| ATTGCTTGTGGAGGGCGAGC+AGG | + | chr1.4:59730128-59730147 | MS.gene40024:CDS | 60.0% | |
| TGTCGAAAACGACGCCACGG+AGG | - | chr1.4:59727981-59728000 | None:intergenic | 60.0% | |
| !! | CCGTGGCGTCGTTTTCGACA+TGG | + | chr1.4:59727981-59728000 | MS.gene40024:CDS | 60.0% |
| ACCACCAAAACGCGCCTCCG+TGG | + | chr1.4:59727964-59727983 | MS.gene40024:CDS | 65.0% | |
| !! | GACGCCACGGAGGCGCGTTT+TGG | - | chr1.4:59727971-59727990 | None:intergenic | 70.0% |
| !! | GCCACGGAGGCGCGTTTTGG+TGG | - | chr1.4:59727968-59727987 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 59727901 | 59730292 | 59727901 | ID=MS.gene40024 |
| chr1.4 | mRNA | 59727901 | 59730292 | 59727901 | ID=MS.gene40024.t1;Parent=MS.gene40024 |
| chr1.4 | exon | 59727901 | 59728216 | 59727901 | ID=MS.gene40024.t1.exon1;Parent=MS.gene40024.t1 |
| chr1.4 | CDS | 59727901 | 59728216 | 59727901 | ID=cds.MS.gene40024.t1;Parent=MS.gene40024.t1 |
| chr1.4 | exon | 59728294 | 59728397 | 59728294 | ID=MS.gene40024.t1.exon2;Parent=MS.gene40024.t1 |
| chr1.4 | CDS | 59728294 | 59728397 | 59728294 | ID=cds.MS.gene40024.t1;Parent=MS.gene40024.t1 |
| chr1.4 | exon | 59729461 | 59729595 | 59729461 | ID=MS.gene40024.t1.exon3;Parent=MS.gene40024.t1 |
| chr1.4 | CDS | 59729461 | 59729595 | 59729461 | ID=cds.MS.gene40024.t1;Parent=MS.gene40024.t1 |
| chr1.4 | exon | 59730128 | 59730292 | 59730128 | ID=MS.gene40024.t1.exon4;Parent=MS.gene40024.t1 |
| chr1.4 | CDS | 59730128 | 59730292 | 59730128 | ID=cds.MS.gene40024.t1;Parent=MS.gene40024.t1 |
| Gene Sequence |
| Protein sequence |
