Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56441.t1 | XP_003607854.1 | 96.1 | 413 | 15 | 1 | 1 | 412 | 13 | 425 | 2.20E-228 | 801.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56441.t1 | Q9MA87 | 62.5 | 427 | 138 | 9 | 8 | 412 | 16 | 442 | 3.5e-145 | 516.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56441.t1 | G7JIR1 | 96.1 | 413 | 15 | 1 | 1 | 412 | 13 | 425 | 1.6e-228 | 801.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene56441 | 0.825056 | 5.77E-54 | -1.69E-46 |
| MS.gene049283 | MS.gene56441 | 0.821369 | 4.19E-53 | -1.69E-46 |
| MS.gene049419 | MS.gene56441 | -0.827854 | 1.24E-54 | -1.69E-46 |
| MS.gene049452 | MS.gene56441 | 0.826271 | 2.97E-54 | -1.69E-46 |
| MS.gene049499 | MS.gene56441 | 0.807418 | 5.10E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene56441 | 0.845267 | 4.52E-59 | -1.69E-46 |
| MS.gene050026 | MS.gene56441 | 0.802973 | 4.35E-49 | -1.69E-46 |
| MS.gene050105 | MS.gene56441 | 0.827481 | 1.53E-54 | -1.69E-46 |
| MS.gene050414 | MS.gene56441 | 0.807258 | 5.52E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene56441 | 0.820121 | 8.11E-53 | -1.69E-46 |
| MS.gene050561 | MS.gene56441 | 0.822854 | 1.90E-53 | -1.69E-46 |
| MS.gene050562 | MS.gene56441 | 0.815726 | 7.98E-52 | -1.69E-46 |
| MS.gene050826 | MS.gene56441 | 0.807765 | 4.31E-50 | -1.69E-46 |
| MS.gene051122 | MS.gene56441 | 0.807798 | 4.24E-50 | -1.69E-46 |
| MS.gene051181 | MS.gene56441 | 0.802389 | 5.74E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene56441 | 0.807146 | 5.83E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene56441 | 0.80202 | 6.84E-49 | -1.69E-46 |
| MS.gene051332 | MS.gene56441 | 0.822099 | 2.84E-53 | -1.69E-46 |
| MS.gene051368 | MS.gene56441 | 0.841916 | 3.55E-58 | -1.69E-46 |
| MS.gene051800 | MS.gene56441 | 0.827014 | 1.98E-54 | -1.69E-46 |
| MS.gene051924 | MS.gene56441 | -0.820964 | 5.19E-53 | -1.69E-46 |
| MS.gene051926 | MS.gene56441 | -0.821996 | 3.00E-53 | -1.69E-46 |
| MS.gene052037 | MS.gene56441 | 0.814696 | 1.35E-51 | -1.69E-46 |
| MS.gene052108 | MS.gene56441 | 0.825739 | 3.98E-54 | -1.69E-46 |
| MS.gene05216 | MS.gene56441 | 0.806629 | 7.50E-50 | -1.69E-46 |
| MS.gene052239 | MS.gene56441 | -0.805592 | 1.24E-49 | -1.69E-46 |
| MS.gene052333 | MS.gene56441 | 0.830181 | 3.39E-55 | -1.69E-46 |
| MS.gene052463 | MS.gene56441 | 0.803807 | 2.92E-49 | -1.69E-46 |
| MS.gene052500 | MS.gene56441 | 0.814742 | 1.32E-51 | -1.69E-46 |
| MS.gene052502 | MS.gene56441 | 0.807836 | 4.16E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene56441 | 0.802647 | 5.08E-49 | -1.69E-46 |
| MS.gene052534 | MS.gene56441 | 0.81734 | 3.47E-52 | -1.69E-46 |
| MS.gene052582 | MS.gene56441 | 0.807083 | 6.01E-50 | -1.69E-46 |
| MS.gene052586 | MS.gene56441 | 0.811206 | 7.86E-51 | -1.69E-46 |
| MS.gene052674 | MS.gene56441 | 0.856604 | 2.88E-62 | -1.69E-46 |
| MS.gene052675 | MS.gene56441 | 0.856717 | 2.66E-62 | -1.69E-46 |
| MS.gene052677 | MS.gene56441 | 0.858595 | 7.40E-63 | -1.69E-46 |
| MS.gene052773 | MS.gene56441 | 0.808488 | 3.02E-50 | -1.69E-46 |
| MS.gene052826 | MS.gene56441 | 0.81396 | 1.96E-51 | -1.69E-46 |
| MS.gene052954 | MS.gene56441 | 0.816118 | 6.52E-52 | -1.69E-46 |
| MS.gene05308 | MS.gene56441 | 0.801967 | 7.01E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene56441 | 0.816118 | 6.52E-52 | -1.69E-46 |
| MS.gene053931 | MS.gene56441 | 0.835981 | 1.22E-56 | -1.69E-46 |
| MS.gene053963 | MS.gene56441 | 0.802739 | 4.86E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene56441 | 0.826202 | 3.09E-54 | -1.69E-46 |
| MS.gene054479 | MS.gene56441 | 0.842387 | 2.67E-58 | -1.69E-46 |
| MS.gene054576 | MS.gene56441 | 0.814104 | 1.83E-51 | -1.69E-46 |
| MS.gene054641 | MS.gene56441 | 0.804669 | 1.93E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene56441 | 0.818552 | 1.85E-52 | -1.69E-46 |
| MS.gene054892 | MS.gene56441 | 0.814514 | 1.48E-51 | -1.69E-46 |
| MS.gene054893 | MS.gene56441 | 0.813827 | 2.10E-51 | -1.69E-46 |
| MS.gene055227 | MS.gene56441 | 0.806927 | 6.49E-50 | -1.69E-46 |
| MS.gene055228 | MS.gene56441 | 0.82033 | 7.26E-53 | -1.69E-46 |
| MS.gene055230 | MS.gene56441 | 0.808085 | 3.68E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene56441 | 0.831843 | 1.33E-55 | -1.69E-46 |
| MS.gene055724 | MS.gene56441 | 0.835949 | 1.25E-56 | -1.69E-46 |
| MS.gene055818 | MS.gene56441 | 0.808658 | 2.78E-50 | -1.69E-46 |
| MS.gene055926 | MS.gene56441 | 0.814315 | 1.64E-51 | -1.69E-46 |
| MS.gene056045 | MS.gene56441 | 0.803719 | 3.05E-49 | -1.69E-46 |
| MS.gene056162 | MS.gene56441 | 0.80079 | 1.22E-48 | -1.69E-46 |
| MS.gene056174 | MS.gene56441 | 0.824684 | 7.06E-54 | -1.69E-46 |
| MS.gene056252 | MS.gene56441 | 0.811049 | 8.50E-51 | -1.69E-46 |
| MS.gene056480 | MS.gene56441 | 0.820671 | 6.06E-53 | -1.69E-46 |
| MS.gene056506 | MS.gene56441 | 0.808143 | 3.58E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene56441 | 0.804467 | 2.13E-49 | -1.69E-46 |
| MS.gene056776 | MS.gene56441 | 0.811686 | 6.18E-51 | -1.69E-46 |
| MS.gene056779 | MS.gene56441 | 0.836575 | 8.64E-57 | -1.69E-46 |
| MS.gene05686 | MS.gene56441 | 0.825131 | 5.54E-54 | -1.69E-46 |
| MS.gene056873 | MS.gene56441 | 0.802505 | 5.43E-49 | -1.69E-46 |
| MS.gene056973 | MS.gene56441 | 0.812496 | 4.12E-51 | -1.69E-46 |
| MS.gene057026 | MS.gene56441 | 0.801922 | 7.16E-49 | -1.69E-46 |
| MS.gene057155 | MS.gene56441 | 0.813459 | 2.53E-51 | -1.69E-46 |
| MS.gene057156 | MS.gene56441 | -0.812491 | 4.13E-51 | -1.69E-46 |
| MS.gene057208 | MS.gene56441 | 0.870738 | 1.16E-66 | -1.69E-46 |
| MS.gene057371 | MS.gene56441 | 0.805629 | 1.22E-49 | -1.69E-46 |
| MS.gene057598 | MS.gene56441 | 0.800482 | 1.41E-48 | -1.69E-46 |
| MS.gene057611 | MS.gene56441 | 0.807705 | 4.44E-50 | -1.69E-46 |
| MS.gene057855 | MS.gene56441 | 0.821802 | 3.33E-53 | -1.69E-46 |
| MS.gene058008 | MS.gene56441 | 0.815924 | 7.20E-52 | -1.69E-46 |
| MS.gene058009 | MS.gene56441 | 0.811402 | 7.13E-51 | -1.69E-46 |
| MS.gene058010 | MS.gene56441 | 0.827046 | 1.94E-54 | -1.69E-46 |
| MS.gene058081 | MS.gene56441 | 0.802836 | 4.64E-49 | -1.69E-46 |
| MS.gene058223 | MS.gene56441 | -0.829042 | 6.42E-55 | -1.69E-46 |
| MS.gene058279 | MS.gene56441 | 0.816696 | 4.84E-52 | -1.69E-46 |
| MS.gene058769 | MS.gene56441 | 0.801999 | 6.91E-49 | -1.69E-46 |
| MS.gene058781 | MS.gene56441 | 0.812892 | 3.37E-51 | -1.69E-46 |
| MS.gene058783 | MS.gene56441 | 0.820847 | 5.52E-53 | -1.69E-46 |
| MS.gene058979 | MS.gene56441 | 0.824081 | 9.79E-54 | -1.69E-46 |
| MS.gene059438 | MS.gene56441 | 0.811633 | 6.35E-51 | -1.69E-46 |
| MS.gene059439 | MS.gene56441 | 0.831142 | 1.97E-55 | -1.69E-46 |
| MS.gene059440 | MS.gene56441 | 0.813824 | 2.10E-51 | -1.69E-46 |
| MS.gene05952 | MS.gene56441 | 0.807105 | 5.94E-50 | -1.69E-46 |
| MS.gene059584 | MS.gene56441 | 0.804169 | 2.46E-49 | -1.69E-46 |
| MS.gene059952 | MS.gene56441 | 0.82147 | 3.97E-53 | -1.69E-46 |
| MS.gene060244 | MS.gene56441 | 0.800955 | 1.13E-48 | -1.69E-46 |
| MS.gene060322 | MS.gene56441 | 0.818537 | 1.86E-52 | -1.69E-46 |
| MS.gene060365 | MS.gene56441 | 0.801135 | 1.04E-48 | -1.69E-46 |
| MS.gene060527 | MS.gene56441 | 0.813407 | 2.60E-51 | -1.69E-46 |
| MS.gene06052 | MS.gene56441 | 0.819265 | 1.27E-52 | -1.69E-46 |
| MS.gene060777 | MS.gene56441 | 0.836522 | 8.91E-57 | -1.69E-46 |
| MS.gene060850 | MS.gene56441 | 0.807451 | 5.02E-50 | -1.69E-46 |
| MS.gene060851 | MS.gene56441 | 0.818269 | 2.14E-52 | -1.69E-46 |
| MS.gene060852 | MS.gene56441 | 0.815724 | 7.98E-52 | -1.69E-46 |
| MS.gene060879 | MS.gene56441 | 0.800368 | 1.49E-48 | -1.69E-46 |
| MS.gene060932 | MS.gene56441 | 0.818466 | 1.93E-52 | -1.69E-46 |
| MS.gene060935 | MS.gene56441 | 0.823337 | 1.46E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene56441 | 0.828439 | 8.98E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56441.t1 | MTR_4g083590 | 96.126 | 413 | 15 | 1 | 1 | 412 | 13 | 425 | 0.0 | 820 |
| MS.gene56441.t1 | MTR_2g028900 | 70.353 | 425 | 108 | 5 | 3 | 410 | 9 | 432 | 0.0 | 604 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56441.t1 | AT3G05320 | 62.529 | 427 | 138 | 9 | 8 | 412 | 16 | 442 | 0.0 | 534 |
| MS.gene56441.t1 | AT3G05320 | 62.529 | 427 | 138 | 9 | 8 | 412 | 16 | 442 | 0.0 | 534 |
| MS.gene56441.t1 | AT3G05320 | 62.529 | 427 | 138 | 9 | 8 | 412 | 16 | 442 | 0.0 | 534 |
Find 63 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTCAAAATTCTTCAATAT+TGG | 0.230483 | 4.3:-27933524 | MS.gene56441:CDS |
| CGCAAGAATGTTTCATCATA+TGG | 0.247238 | 4.3:-27934285 | MS.gene56441:CDS |
| CTTTCTTGTGGCATGATCAT+TGG | 0.261574 | 4.3:-27933864 | MS.gene56441:CDS |
| AACACAAAAGATGATCAAAT+TGG | 0.268660 | 4.3:-27933326 | MS.gene56441:CDS |
| GTGGACAGTTGAAAGGGATT+TGG | 0.319886 | 4.3:-27933956 | MS.gene56441:CDS |
| ACCTTTGCATAGTCCTTAAC+AGG | 0.326962 | 4.3:+27933841 | None:intergenic |
| CCCTTGCAAATGCAATCTTT+TGG | 0.340133 | 4.3:+27934202 | None:intergenic |
| ATTGCAGACTGAATTAAATA+AGG | 0.349906 | 4.3:+27933430 | None:intergenic |
| CCAAGTTTCTTCTTCTCATA+AGG | 0.367277 | 4.3:+27933478 | None:intergenic |
| GTTGGTAACCATGATGATAA+AGG | 0.386254 | 4.3:-27933748 | MS.gene56441:CDS |
| ATGAATTACCTTTATCATCA+TGG | 0.396445 | 4.3:+27933740 | None:intergenic |
| ATTCTTCAATATTGGAAGGT+TGG | 0.400853 | 4.3:-27933516 | MS.gene56441:CDS |
| ACATGAGAGTAGAAATTGAT+TGG | 0.407692 | 4.3:-27933687 | MS.gene56441:CDS |
| TAGTAGCAAGAATGAGATAA+TGG | 0.408374 | 4.3:-27933614 | MS.gene56441:CDS |
| ACTGCAAGATAAAGAACAAC+TGG | 0.413545 | 4.3:+27933559 | None:intergenic |
| TTTAATCCCCACACAATTTG+AGG | 0.419362 | 4.3:+27934228 | None:intergenic |
| TTGAGAGCTGATATCTTTGT+TGG | 0.421531 | 4.3:-27933391 | MS.gene56441:CDS |
| AACACCTTGTCAAATGAAAT+CGG | 0.421780 | 4.3:+27934090 | None:intergenic |
| CATTCTTGCGCGTAAATACA+AGG | 0.427389 | 4.3:+27934298 | None:intergenic |
| ATTGAGGTGATTAAGATTGA+TGG | 0.430449 | 4.3:-27933895 | MS.gene56441:CDS |
| TTTATATTATATGCAAAAGA+AGG | 0.438653 | 4.3:+27933268 | None:intergenic |
| GCCTCTATGATTAGAAAAGT+TGG | 0.443332 | 4.3:-27933766 | MS.gene56441:CDS |
| GCATGATCATTGGCCTGTTA+AGG | 0.447996 | 4.3:-27933854 | MS.gene56441:CDS |
| ATATTGGAAGGTTGGAAAGA+AGG | 0.448216 | 4.3:-27933508 | MS.gene56441:CDS |
| AATGATCATGCCACAAGAAA+GGG | 0.451098 | 4.3:+27933866 | None:intergenic |
| ATGAGATAATGGAAAGAGTA+GGG | 0.459739 | 4.3:-27933603 | MS.gene56441:CDS |
| ACACAAAAGATGATCAAATT+GGG | 0.466064 | 4.3:-27933325 | MS.gene56441:CDS |
| CAATGATCATGCCACAAGAA+AGG | 0.479742 | 4.3:+27933865 | None:intergenic |
| GGAGGTTCCTCAAATTGTGT+GGG | 0.483333 | 4.3:-27934235 | MS.gene56441:CDS |
| CCTTATGAGAAGAAGAAACT+TGG | 0.492913 | 4.3:-27933478 | MS.gene56441:CDS |
| AATGAGATAATGGAAAGAGT+AGG | 0.495512 | 4.3:-27933604 | MS.gene56441:CDS |
| TGGAGGTTCCTCAAATTGTG+TGG | 0.500076 | 4.3:-27934236 | MS.gene56441:CDS |
| ACCAAAAGATTGCATTTGCA+AGG | 0.505247 | 4.3:-27934203 | MS.gene56441:CDS |
| TTGAGGTGATTAAGATTGAT+GGG | 0.506436 | 4.3:-27933894 | MS.gene56441:CDS |
| CAAAATTCTTCAATATTGGA+AGG | 0.510361 | 4.3:-27933520 | MS.gene56441:CDS |
| AATTGAATGGTCCTATGAGA+TGG | 0.511997 | 4.3:-27933240 | MS.gene56441:CDS |
| AATATAAAAGGAGAATTGAA+TGG | 0.513612 | 4.3:-27933253 | MS.gene56441:CDS |
| ATATTTGTAACCCATCTCAT+AGG | 0.515941 | 4.3:+27933229 | None:intergenic |
| CTCATGTGAACAGCAACATA+AGG | 0.518574 | 4.3:+27933703 | None:intergenic |
| CCAAAAGATTGCATTTGCAA+GGG | 0.530122 | 4.3:-27934202 | MS.gene56441:CDS |
| CTGATAAAGTTAATGGGTGG+TGG | 0.531434 | 4.3:-27934402 | None:intergenic |
| AGCCTTCATGCTATCAGCTA+TGG | 0.542544 | 4.3:-27933196 | MS.gene56441:CDS |
| GTAGAAAGTGGACAGTTGAA+AGG | 0.547343 | 4.3:-27933963 | MS.gene56441:CDS |
| ATGGGAAAACCCCTTTCTTG+TGG | 0.557806 | 4.3:-27933876 | MS.gene56441:CDS |
| GCCTGTTAAGGACTATGCAA+AGG | 0.559420 | 4.3:-27933842 | MS.gene56441:CDS |
| TAGAAAGTGGACAGTTGAAA+GGG | 0.571713 | 4.3:-27933962 | MS.gene56441:CDS |
| GAGGTTCCTCAAATTGTGTG+GGG | 0.573751 | 4.3:-27934234 | MS.gene56441:CDS |
| ATTGAATGGTCCTATGAGAT+GGG | 0.575314 | 4.3:-27933239 | MS.gene56441:CDS |
| GTTGAATTGCAGAAAGGAAG+CGG | 0.576987 | 4.3:-27933985 | MS.gene56441:CDS |
| TCTCTTGAACAGAACAGAAG+TGG | 0.597718 | 4.3:-27934007 | MS.gene56441:CDS |
| ATAGCTTTCAACAAGAAATG+TGG | 0.601889 | 4.3:+27933167 | None:intergenic |
| ATTGATTTCCTTGTAAAACA+AGG | 0.609636 | 4.3:+27934122 | None:intergenic |
| CTTGAGTATATTCATCAACC+AGG | 0.612021 | 4.3:+27933803 | None:intergenic |
| GAAGTGGTTGAATTGCAGAA+AGG | 0.612730 | 4.3:-27933991 | MS.gene56441:CDS |
| AAATTTAATGAACTGTGTAG+TGG | 0.613501 | 4.3:-27934057 | MS.gene56441:CDS |
| AGAAAGGAAGCGGTAGAAAG+TGG | 0.619057 | 4.3:-27933975 | MS.gene56441:CDS |
| TGCCATAGCTGATAGCATGA+AGG | 0.627885 | 4.3:+27933194 | None:intergenic |
| TGTGTGGAAGTGATGTAAGA+TGG | 0.635629 | 4.3:-27933291 | MS.gene56441:CDS |
| AACAAGGAAGCACTAAGACT+AGG | 0.654550 | 4.3:+27934138 | None:intergenic |
| ATGATCATGCCACAAGAAAG+GGG | 0.657561 | 4.3:+27933867 | None:intergenic |
| ACAACCGATTTCATTTGACA+AGG | 0.662499 | 4.3:-27934094 | MS.gene56441:CDS |
| TTGGGTGTGAATGAAATGTG+TGG | 0.683523 | 4.3:-27933307 | MS.gene56441:CDS |
| AAACTGATAAAGTTAATGGG+TGG | 0.765999 | 4.3:-27934405 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATTATATGCAAAAGA+AGG | + | chr4.3:27934299-27934318 | None:intergenic | 15.0% |
| !!! | TCTTTTGCATATAATATAAA+AGG | - | chr4.3:27934299-27934318 | MS.gene56441:CDS | 15.0% |
| !! | AATATAAAAGGAGAATTGAA+TGG | - | chr4.3:27934311-27934330 | MS.gene56441:CDS | 20.0% |
| !! | ACTTCAAAATTCTTCAATAT+TGG | - | chr4.3:27934040-27934059 | MS.gene56441:CDS | 20.0% |
| ! | AAATTTAATGAACTGTGTAG+TGG | - | chr4.3:27933507-27933526 | MS.gene56441:CDS | 25.0% |
| ! | AACACAAAAGATGATCAAAT+TGG | - | chr4.3:27934238-27934257 | MS.gene56441:CDS | 25.0% |
| ! | ACACAAAAGATGATCAAATT+GGG | - | chr4.3:27934239-27934258 | MS.gene56441:CDS | 25.0% |
| ! | ATGAATTACCTTTATCATCA+TGG | + | chr4.3:27933827-27933846 | None:intergenic | 25.0% |
| ! | ATTGCAGACTGAATTAAATA+AGG | + | chr4.3:27934137-27934156 | None:intergenic | 25.0% |
| ! | CAAAATTCTTCAATATTGGA+AGG | - | chr4.3:27934044-27934063 | MS.gene56441:CDS | 25.0% |
| ! | GATGATTCATTGCAAAAAAT+TGG | - | chr4.3:27933899-27933918 | MS.gene56441:CDS | 25.0% |
| !! | ATTGATTTCCTTGTAAAACA+AGG | + | chr4.3:27933445-27933464 | None:intergenic | 25.0% |
| !! | CAGTATAAAAATGGTTCTTT+TGG | - | chr4.3:27933642-27933661 | MS.gene56441:CDS | 25.0% |
| !! | TGTTCAACAACAAAAGTTTT+TGG | - | chr4.3:27933308-27933327 | MS.gene56441:CDS | 25.0% |
| !!! | TATTGCTGTTTTGATTCTAA+GGG | - | chr4.3:27933224-27933243 | MS.gene56441:CDS | 25.0% |
| !!! | TTATTGCTGTTTTGATTCTA+AGG | - | chr4.3:27933223-27933242 | MS.gene56441:CDS | 25.0% |
| AACACCTTGTCAAATGAAAT+CGG | + | chr4.3:27933477-27933496 | None:intergenic | 30.0% | |
| ACATGAGAGTAGAAATTGAT+TGG | - | chr4.3:27933877-27933896 | MS.gene56441:CDS | 30.0% | |
| ATATTTGTAACCCATCTCAT+AGG | + | chr4.3:27934338-27934357 | None:intergenic | 30.0% | |
| ATTCTTCAATATTGGAAGGT+TGG | - | chr4.3:27934048-27934067 | MS.gene56441:CDS | 30.0% | |
| ATTGAGGTGATTAAGATTGA+TGG | - | chr4.3:27933669-27933688 | MS.gene56441:CDS | 30.0% | |
| CAGTTGAGACAGTATAAAAA+TGG | - | chr4.3:27933633-27933652 | MS.gene56441:CDS | 30.0% | |
| TAGTAGCAAGAATGAGATAA+TGG | - | chr4.3:27933950-27933969 | MS.gene56441:CDS | 30.0% | |
| TTGAGGTGATTAAGATTGAT+GGG | - | chr4.3:27933670-27933689 | MS.gene56441:CDS | 30.0% | |
| ! | ACCAACTTTTCTAATCATAG+AGG | + | chr4.3:27933802-27933821 | None:intergenic | 30.0% |
| !! | AATGAGATAATGGAAAGAGT+AGG | - | chr4.3:27933960-27933979 | MS.gene56441:CDS | 30.0% |
| !! | ATGAGATAATGGAAAGAGTA+GGG | - | chr4.3:27933961-27933980 | MS.gene56441:CDS | 30.0% |
| !! | TCAACAACAAAAGTTTTTGG+AGG | - | chr4.3:27933311-27933330 | MS.gene56441:CDS | 30.0% |
| !!! | TGTAGTGGTTTTGTTCAATT+GGG | - | chr4.3:27933522-27933541 | MS.gene56441:CDS | 30.0% |
| AATGATCATGCCACAAGAAA+GGG | + | chr4.3:27933701-27933720 | None:intergenic | 35.0% | |
| AATTGAATGGTCCTATGAGA+TGG | - | chr4.3:27934324-27934343 | MS.gene56441:CDS | 35.0% | |
| ACCAAAAGATTGCATTTGCA+AGG | - | chr4.3:27933361-27933380 | MS.gene56441:CDS | 35.0% | |
| ACTGCAAGATAAAGAACAAC+TGG | + | chr4.3:27934008-27934027 | None:intergenic | 35.0% | |
| ATATTGGAAGGTTGGAAAGA+AGG | - | chr4.3:27934056-27934075 | MS.gene56441:CDS | 35.0% | |
| ATTGAATGGTCCTATGAGAT+GGG | - | chr4.3:27934325-27934344 | MS.gene56441:CDS | 35.0% | |
| CCAAAAGATTGCATTTGCAA+GGG | - | chr4.3:27933362-27933381 | MS.gene56441:CDS | 35.0% | |
| CCAAGTTTCTTCTTCTCATA+AGG | + | chr4.3:27934089-27934108 | None:intergenic | 35.0% | |
| CCTTATGAGAAGAAGAAACT+TGG | - | chr4.3:27934086-27934105 | MS.gene56441:CDS | 35.0% | |
| CGCAAGAATGTTTCATCATA+TGG | - | chr4.3:27933279-27933298 | MS.gene56441:CDS | 35.0% | |
| CTTGAGTATATTCATCAACC+AGG | + | chr4.3:27933764-27933783 | None:intergenic | 35.0% | |
| GCCTCTATGATTAGAAAAGT+TGG | - | chr4.3:27933798-27933817 | MS.gene56441:CDS | 35.0% | |
| TAGAAAGTGGACAGTTGAAA+GGG | - | chr4.3:27933602-27933621 | MS.gene56441:CDS | 35.0% | |
| TTGAGAGCTGATATCTTTGT+TGG | - | chr4.3:27934173-27934192 | MS.gene56441:CDS | 35.0% | |
| TTTAATCCCCACACAATTTG+AGG | + | chr4.3:27933339-27933358 | None:intergenic | 35.0% | |
| ! | ACAACCGATTTCATTTGACA+AGG | - | chr4.3:27933470-27933489 | MS.gene56441:CDS | 35.0% |
| !! | GTTGGTAACCATGATGATAA+AGG | - | chr4.3:27933816-27933835 | MS.gene56441:CDS | 35.0% |
| !! | TGGTTCTTTTGGTGATATTG+AGG | - | chr4.3:27933653-27933672 | MS.gene56441:CDS | 35.0% |
| !!! | GTGTAGTGGTTTTGTTCAAT+TGG | - | chr4.3:27933521-27933540 | MS.gene56441:CDS | 35.0% |
| !!! | TAGTGCTTCCTTGTTTTACA+AGG | - | chr4.3:27933434-27933453 | MS.gene56441:CDS | 35.0% |
| ACCTTTGCATAGTCCTTAAC+AGG | + | chr4.3:27933726-27933745 | None:intergenic | 40.0% | |
| ATGATCATGCCACAAGAAAG+GGG | + | chr4.3:27933700-27933719 | None:intergenic | 40.0% | |
| CAATGATCATGCCACAAGAA+AGG | + | chr4.3:27933702-27933721 | None:intergenic | 40.0% | |
| CATTCTTGCGCGTAAATACA+AGG | + | chr4.3:27933269-27933288 | None:intergenic | 40.0% | |
| CTCATGTGAACAGCAACATA+AGG | + | chr4.3:27933864-27933883 | None:intergenic | 40.0% | |
| CTTTCTTGTGGCATGATCAT+TGG | - | chr4.3:27933700-27933719 | MS.gene56441:CDS | 40.0% | |
| GAAGTGGTTGAATTGCAGAA+AGG | - | chr4.3:27933573-27933592 | MS.gene56441:CDS | 40.0% | |
| GTAGAAAGTGGACAGTTGAA+AGG | - | chr4.3:27933601-27933620 | MS.gene56441:CDS | 40.0% | |
| GTTGAATTGCAGAAAGGAAG+CGG | - | chr4.3:27933579-27933598 | MS.gene56441:CDS | 40.0% | |
| TCTCTTGAACAGAACAGAAG+TGG | - | chr4.3:27933557-27933576 | MS.gene56441:CDS | 40.0% | |
| TGTGTGGAAGTGATGTAAGA+TGG | - | chr4.3:27934273-27934292 | MS.gene56441:CDS | 40.0% | |
| TTGGGTGTGAATGAAATGTG+TGG | - | chr4.3:27934257-27934276 | MS.gene56441:CDS | 40.0% | |
| ! | CCCTTGCAAATGCAATCTTT+TGG | + | chr4.3:27933365-27933384 | None:intergenic | 40.0% |
| ! | CGCGTAAATACAAGGTTTTG+AGG | + | chr4.3:27933261-27933280 | None:intergenic | 40.0% |
| !! | AACAAGGAAGCACTAAGACT+AGG | + | chr4.3:27933429-27933448 | None:intergenic | 40.0% |
| AGAAAGGAAGCGGTAGAAAG+TGG | - | chr4.3:27933589-27933608 | MS.gene56441:CDS | 45.0% | |
| AGCCTTCATGCTATCAGCTA+TGG | - | chr4.3:27934368-27934387 | MS.gene56441:CDS | 45.0% | |
| ATGGGAAAACCCCTTTCTTG+TGG | - | chr4.3:27933688-27933707 | MS.gene56441:CDS | 45.0% | |
| GAGGTTCCTCAAATTGTGTG+GGG | - | chr4.3:27933330-27933349 | MS.gene56441:CDS | 45.0% | |
| GCCTGTTAAGGACTATGCAA+AGG | - | chr4.3:27933722-27933741 | MS.gene56441:CDS | 45.0% | |
| GGAGGTTCCTCAAATTGTGT+GGG | - | chr4.3:27933329-27933348 | MS.gene56441:CDS | 45.0% | |
| GTGGACAGTTGAAAGGGATT+TGG | - | chr4.3:27933608-27933627 | MS.gene56441:CDS | 45.0% | |
| TGCCATAGCTGATAGCATGA+AGG | + | chr4.3:27934373-27934392 | None:intergenic | 45.0% | |
| TGGAGGTTCCTCAAATTGTG+TGG | - | chr4.3:27933328-27933347 | MS.gene56441:CDS | 45.0% | |
| ! | GCATGATCATTGGCCTGTTA+AGG | - | chr4.3:27933710-27933729 | MS.gene56441:CDS | 45.0% |
| !!! | GGTTTTTGAGTGCTTAGTCC+TGG | - | chr4.3:27933743-27933762 | MS.gene56441:CDS | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 27933174 | 27934412 | 27933174 | ID=MS.gene56441 |
| chr4.3 | mRNA | 27933174 | 27934412 | 27933174 | ID=MS.gene56441.t1;Parent=MS.gene56441 |
| chr4.3 | exon | 27933174 | 27934412 | 27933174 | ID=MS.gene56441.t1.exon1;Parent=MS.gene56441.t1 |
| chr4.3 | CDS | 27933174 | 27934412 | 27933174 | ID=cds.MS.gene56441.t1;Parent=MS.gene56441.t1 |
| Gene Sequence |
| Protein sequence |
