Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58724.t1 | KEH32210.1 | 88.3 | 239 | 18 | 1 | 1 | 239 | 1 | 229 | 3.00E-116 | 427.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58724.t1 | Q9ZT66 | 46.0 | 163 | 84 | 3 | 26 | 188 | 55 | 213 | 1.6e-33 | 144.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58724.t1 | A0A072V264 | 88.3 | 239 | 18 | 1 | 1 | 239 | 1 | 229 | 2.2e-116 | 427.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene58724 | -0.811204 | 7.87E-51 | -1.69E-46 |
| MS.gene049217 | MS.gene58724 | -0.822077 | 2.87E-53 | -1.69E-46 |
| MS.gene049222 | MS.gene58724 | -0.826245 | 3.01E-54 | -1.69E-46 |
| MS.gene049265 | MS.gene58724 | 0.804176 | 2.45E-49 | -1.69E-46 |
| MS.gene049285 | MS.gene58724 | -0.813579 | 2.38E-51 | -1.69E-46 |
| MS.gene049320 | MS.gene58724 | -0.846204 | 2.52E-59 | -1.69E-46 |
| MS.gene049611 | MS.gene58724 | 0.840351 | 9.16E-58 | -1.69E-46 |
| MS.gene049633 | MS.gene58724 | -0.801687 | 8.00E-49 | -1.69E-46 |
| MS.gene049634 | MS.gene58724 | 0.841176 | 5.57E-58 | -1.69E-46 |
| MS.gene05010 | MS.gene58724 | -0.804484 | 2.11E-49 | -1.69E-46 |
| MS.gene050163 | MS.gene58724 | -0.813034 | 3.14E-51 | -1.69E-46 |
| MS.gene050165 | MS.gene58724 | -0.818495 | 1.90E-52 | -1.69E-46 |
| MS.gene050216 | MS.gene58724 | -0.803801 | 2.93E-49 | -1.69E-46 |
| MS.gene050323 | MS.gene58724 | -0.815567 | 8.65E-52 | -1.69E-46 |
| MS.gene050333 | MS.gene58724 | -0.804478 | 2.12E-49 | -1.69E-46 |
| MS.gene050380 | MS.gene58724 | 0.800611 | 1.33E-48 | -1.69E-46 |
| MS.gene050381 | MS.gene58724 | 0.852384 | 4.78E-61 | -1.69E-46 |
| MS.gene050444 | MS.gene58724 | -0.812755 | 3.61E-51 | -1.69E-46 |
| MS.gene050496 | MS.gene58724 | -0.808276 | 3.35E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene58724 | -0.834726 | 2.54E-56 | -1.69E-46 |
| MS.gene050518 | MS.gene58724 | -0.815008 | 1.15E-51 | -1.69E-46 |
| MS.gene050612 | MS.gene58724 | -0.853157 | 2.88E-61 | -1.69E-46 |
| MS.gene050675 | MS.gene58724 | -0.814487 | 1.50E-51 | -1.69E-46 |
| MS.gene050699 | MS.gene58724 | -0.803534 | 3.33E-49 | -1.69E-46 |
| MS.gene05079 | MS.gene58724 | 0.822054 | 2.91E-53 | -1.69E-46 |
| MS.gene050809 | MS.gene58724 | 0.805355 | 1.39E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene58724 | -0.844841 | 5.89E-59 | -1.69E-46 |
| MS.gene050871 | MS.gene58724 | -0.841056 | 5.99E-58 | -1.69E-46 |
| MS.gene050986 | MS.gene58724 | -0.815148 | 1.07E-51 | -1.69E-46 |
| MS.gene051044 | MS.gene58724 | 0.809699 | 1.66E-50 | -1.69E-46 |
| MS.gene05104 | MS.gene58724 | 0.827927 | 1.19E-54 | -1.69E-46 |
| MS.gene051127 | MS.gene58724 | 0.85218 | 5.47E-61 | -1.69E-46 |
| MS.gene051138 | MS.gene58724 | 0.878776 | 2.14E-69 | -1.69E-46 |
| MS.gene051268 | MS.gene58724 | -0.8085 | 3.00E-50 | -1.69E-46 |
| MS.gene051364 | MS.gene58724 | 0.816438 | 5.53E-52 | -1.69E-46 |
| MS.gene051366 | MS.gene58724 | 0.816065 | 6.70E-52 | -1.69E-46 |
| MS.gene051632 | MS.gene58724 | 0.820006 | 8.61E-53 | -1.69E-46 |
| MS.gene051651 | MS.gene58724 | 0.801517 | 8.67E-49 | -1.69E-46 |
| MS.gene051810 | MS.gene58724 | -0.816599 | 5.09E-52 | -1.69E-46 |
| MS.gene051863 | MS.gene58724 | 0.805847 | 1.10E-49 | -1.69E-46 |
| MS.gene052164 | MS.gene58724 | -0.809554 | 1.79E-50 | -1.69E-46 |
| MS.gene052211 | MS.gene58724 | 0.811524 | 6.71E-51 | -1.69E-46 |
| MS.gene052966 | MS.gene58724 | -0.800418 | 1.45E-48 | -1.69E-46 |
| MS.gene053420 | MS.gene58724 | 0.87664 | 1.19E-68 | -1.69E-46 |
| MS.gene053488 | MS.gene58724 | 0.861583 | 9.26E-64 | -1.69E-46 |
| MS.gene053561 | MS.gene58724 | 0.856346 | 3.42E-62 | -1.69E-46 |
| MS.gene053887 | MS.gene58724 | 0.806163 | 9.40E-50 | -1.69E-46 |
| MS.gene053916 | MS.gene58724 | -0.80528 | 1.44E-49 | -1.69E-46 |
| MS.gene054054 | MS.gene58724 | 0.815508 | 8.92E-52 | -1.69E-46 |
| MS.gene054056 | MS.gene58724 | 0.822368 | 2.46E-53 | -1.69E-46 |
| MS.gene054595 | MS.gene58724 | -0.807935 | 3.96E-50 | -1.69E-46 |
| MS.gene054616 | MS.gene58724 | 0.814112 | 1.82E-51 | -1.69E-46 |
| MS.gene054642 | MS.gene58724 | -0.827534 | 1.48E-54 | -1.69E-46 |
| MS.gene054706 | MS.gene58724 | 0.834318 | 3.21E-56 | -1.69E-46 |
| MS.gene054707 | MS.gene58724 | 0.81888 | 1.56E-52 | -1.69E-46 |
| MS.gene054708 | MS.gene58724 | 0.828242 | 1.00E-54 | -1.69E-46 |
| MS.gene05470 | MS.gene58724 | -0.802739 | 4.86E-49 | -1.69E-46 |
| MS.gene054954 | MS.gene58724 | -0.81915 | 1.35E-52 | -1.69E-46 |
| MS.gene055124 | MS.gene58724 | 0.83837 | 2.99E-57 | -1.69E-46 |
| MS.gene055154 | MS.gene58724 | 0.884574 | 1.71E-71 | -1.69E-46 |
| MS.gene055202 | MS.gene58724 | 0.832016 | 1.20E-55 | -1.69E-46 |
| MS.gene055362 | MS.gene58724 | -0.829063 | 6.35E-55 | -1.69E-46 |
| MS.gene055502 | MS.gene58724 | -0.839879 | 1.22E-57 | -1.69E-46 |
| MS.gene055577 | MS.gene58724 | -0.816017 | 6.87E-52 | -1.69E-46 |
| MS.gene055748 | MS.gene58724 | -0.808349 | 3.24E-50 | -1.69E-46 |
| MS.gene055751 | MS.gene58724 | -0.815506 | 8.93E-52 | -1.69E-46 |
| MS.gene055776 | MS.gene58724 | -0.819549 | 1.10E-52 | -1.69E-46 |
| MS.gene05589 | MS.gene58724 | -0.82907 | 6.32E-55 | -1.69E-46 |
| MS.gene055942 | MS.gene58724 | 0.834555 | 2.80E-56 | -1.69E-46 |
| MS.gene056224 | MS.gene58724 | 0.85088 | 1.28E-60 | -1.69E-46 |
| MS.gene056504 | MS.gene58724 | -0.842874 | 1.98E-58 | -1.69E-46 |
| MS.gene056510 | MS.gene58724 | -0.801016 | 1.10E-48 | -1.69E-46 |
| MS.gene056657 | MS.gene58724 | -0.837112 | 6.30E-57 | -1.69E-46 |
| MS.gene056856 | MS.gene58724 | 0.826711 | 2.34E-54 | -1.69E-46 |
| MS.gene056857 | MS.gene58724 | 0.81044 | 1.15E-50 | -1.69E-46 |
| MS.gene057014 | MS.gene58724 | 0.822845 | 1.90E-53 | -1.69E-46 |
| MS.gene057549 | MS.gene58724 | 0.822379 | 2.44E-53 | -1.69E-46 |
| MS.gene058068 | MS.gene58724 | 0.802999 | 4.30E-49 | -1.69E-46 |
| MS.gene058093 | MS.gene58724 | 0.845131 | 4.92E-59 | -1.69E-46 |
| MS.gene058099 | MS.gene58724 | 0.861462 | 1.01E-63 | -1.69E-46 |
| MS.gene058109 | MS.gene58724 | 0.821842 | 3.26E-53 | -1.69E-46 |
| MS.gene058117 | MS.gene58724 | 0.8201 | 8.20E-53 | -1.69E-46 |
| MS.gene058171 | MS.gene58724 | 0.83911 | 1.93E-57 | -1.69E-46 |
| MS.gene058173 | MS.gene58724 | 0.829303 | 5.55E-55 | -1.69E-46 |
| MS.gene058175 | MS.gene58724 | 0.844246 | 8.51E-59 | -1.69E-46 |
| MS.gene058268 | MS.gene58724 | 0.81921 | 1.31E-52 | -1.69E-46 |
| MS.gene058269 | MS.gene58724 | 0.828314 | 9.63E-55 | -1.69E-46 |
| MS.gene058334 | MS.gene58724 | 0.820694 | 5.99E-53 | -1.69E-46 |
| MS.gene058419 | MS.gene58724 | -0.817848 | 2.67E-52 | -1.69E-46 |
| MS.gene058603 | MS.gene58724 | 0.848211 | 7.08E-60 | -1.69E-46 |
| MS.gene058723 | MS.gene58724 | -0.804333 | 2.27E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene58724 | -0.815556 | 8.70E-52 | -1.69E-46 |
| MS.gene058840 | MS.gene58724 | 0.843974 | 1.01E-58 | -1.69E-46 |
| MS.gene059022 | MS.gene58724 | -0.842884 | 1.97E-58 | -1.69E-46 |
| MS.gene059045 | MS.gene58724 | 0.822482 | 2.31E-53 | -1.69E-46 |
| MS.gene059677 | MS.gene58724 | -0.833466 | 5.25E-56 | -1.69E-46 |
| MS.gene059690 | MS.gene58724 | 0.827496 | 1.51E-54 | -1.69E-46 |
| MS.gene059691 | MS.gene58724 | 0.825157 | 5.46E-54 | -1.69E-46 |
| MS.gene059694 | MS.gene58724 | 0.831947 | 1.25E-55 | -1.69E-46 |
| MS.gene059697 | MS.gene58724 | 0.826959 | 2.04E-54 | -1.69E-46 |
| MS.gene059699 | MS.gene58724 | 0.82026 | 7.54E-53 | -1.69E-46 |
| MS.gene059701 | MS.gene58724 | 0.804094 | 2.55E-49 | -1.69E-46 |
| MS.gene059703 | MS.gene58724 | 0.826397 | 2.77E-54 | -1.69E-46 |
| MS.gene059718 | MS.gene58724 | -0.804709 | 1.90E-49 | -1.69E-46 |
| MS.gene059865 | MS.gene58724 | -0.844145 | 9.06E-59 | -1.69E-46 |
| MS.gene060762 | MS.gene58724 | -0.82764 | 1.40E-54 | -1.69E-46 |
| MS.gene060778 | MS.gene58724 | -0.801336 | 9.45E-49 | -1.69E-46 |
| MS.gene06077 | MS.gene58724 | -0.816575 | 5.15E-52 | -1.69E-46 |
| MS.gene060982 | MS.gene58724 | -0.806143 | 9.49E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58724.t1 | MTR_4g117390 | 88.285 | 239 | 18 | 1 | 1 | 239 | 1 | 229 | 2.80e-152 | 422 |
| MS.gene58724.t1 | MTR_4g117380 | 69.038 | 239 | 73 | 1 | 1 | 239 | 1 | 238 | 3.92e-117 | 334 |
| MS.gene58724.t1 | MTR_4g117400 | 63.180 | 239 | 88 | 0 | 1 | 239 | 55 | 293 | 5.23e-115 | 331 |
| MS.gene58724.t1 | MTR_4g117450 | 61.088 | 239 | 93 | 0 | 1 | 239 | 1 | 239 | 3.28e-109 | 314 |
| MS.gene58724.t1 | MTR_4g117450 | 58.400 | 250 | 93 | 1 | 1 | 239 | 1 | 250 | 1.39e-105 | 305 |
| MS.gene58724.t1 | MTR_2g021340 | 53.942 | 241 | 109 | 2 | 1 | 239 | 1 | 241 | 1.23e-83 | 249 |
| MS.gene58724.t1 | MTR_4g117450 | 62.431 | 181 | 68 | 0 | 59 | 239 | 2 | 182 | 7.10e-83 | 245 |
| MS.gene58724.t1 | MTR_2g021340 | 55.157 | 223 | 99 | 1 | 18 | 239 | 22 | 244 | 3.35e-80 | 241 |
| MS.gene58724.t1 | MTR_3g005060 | 22.642 | 212 | 148 | 5 | 36 | 238 | 114 | 318 | 6.90e-11 | 61.6 |
| MS.gene58724.t1 | MTR_3g005060 | 22.642 | 212 | 148 | 5 | 36 | 238 | 128 | 332 | 7.52e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58724.t1 | AT3G23600 | 61.925 | 239 | 91 | 0 | 1 | 239 | 1 | 239 | 7.98e-115 | 328 |
| MS.gene58724.t1 | AT3G23600 | 60.669 | 239 | 91 | 1 | 1 | 239 | 1 | 236 | 1.27e-110 | 318 |
| MS.gene58724.t1 | AT3G23570 | 58.577 | 239 | 99 | 0 | 1 | 239 | 1 | 239 | 5.10e-105 | 303 |
| MS.gene58724.t1 | AT3G23570 | 58.577 | 239 | 99 | 0 | 1 | 239 | 1 | 239 | 5.10e-105 | 303 |
| MS.gene58724.t1 | AT3G23570 | 58.577 | 239 | 99 | 0 | 1 | 239 | 1 | 239 | 5.10e-105 | 303 |
| MS.gene58724.t1 | AT1G35420 | 25.118 | 211 | 144 | 5 | 36 | 238 | 69 | 273 | 4.16e-16 | 75.9 |
| MS.gene58724.t1 | AT1G35420 | 25.118 | 211 | 144 | 5 | 36 | 238 | 105 | 309 | 6.22e-16 | 75.9 |
| MS.gene58724.t1 | AT1G35420 | 25.118 | 211 | 144 | 5 | 36 | 238 | 110 | 314 | 7.18e-16 | 75.9 |
Find 50 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTCAAAGCTTCAATTAC+TGG | 0.220353 | 8.1:+9895067 | None:intergenic |
| TCAAACTGTTTGAGGAGTTC+TGG | 0.314829 | 8.1:+9894274 | None:intergenic |
| CTCTAACCTAGCCGTTCTTA+TGG | 0.319996 | 8.1:-9895859 | MS.gene58724:CDS |
| ACATGGCCGACTCCAGAGTT+TGG | 0.329299 | 8.1:+9895927 | None:intergenic |
| CTAACAGACCTTTACCTGTT+TGG | 0.339344 | 8.1:-9895366 | MS.gene58724:CDS |
| GTCCAGCCATGTGAAACTTC+TGG | 0.340920 | 8.1:+9893893 | None:intergenic |
| TTTCACATGGCTGGACTATC+AGG | 0.358042 | 8.1:-9893886 | MS.gene58724:CDS |
| TTCCAGAAGTTTCACATGGC+TGG | 0.386737 | 8.1:-9893895 | MS.gene58724:CDS |
| CAACTCCTAACTACTGAACT+TGG | 0.389976 | 8.1:-9894250 | MS.gene58724:CDS |
| AGTATTCCAACTGCAGTACT+TGG | 0.412633 | 8.1:-9894322 | MS.gene58724:CDS |
| ACCATTCTAGTAAAAGTTGA+TGG | 0.415119 | 8.1:+9893819 | None:intergenic |
| GCAGACAAGGTTGCAGCTGC+AGG | 0.418993 | 8.1:-9895445 | MS.gene58724:CDS |
| CTACCCCAAGTTCAGTAGTT+AGG | 0.430369 | 8.1:+9894245 | None:intergenic |
| GGATGATCTGTTAACCAAAC+AGG | 0.433177 | 8.1:+9895352 | None:intergenic |
| CCAGAGTTTGGATTGAGGAT+TGG | 0.448066 | 8.1:+9895939 | None:intergenic |
| GGAGTTGCTCAAACTGTTTG+AGG | 0.469634 | 8.1:+9894266 | None:intergenic |
| AATCATCCATACCTTAGGTT+CGG | 0.473414 | 8.1:+9895589 | None:intergenic |
| CGACTCCAGAGTTTGGATTG+AGG | 0.482918 | 8.1:+9895934 | None:intergenic |
| TCATCCAAGGTGATAAATGA+AGG | 0.488266 | 8.1:+9894735 | None:intergenic |
| ACACCCTTCATTTATCACCT+TGG | 0.488728 | 8.1:-9894739 | MS.gene58724:CDS |
| AACGGCTAGGTTAGAGTCAG+AGG | 0.489138 | 8.1:+9895866 | None:intergenic |
| TATCACCTTGGATGACATCA+AGG | 0.492969 | 8.1:-9894727 | MS.gene58724:CDS |
| TCTGTTAACCAAACAGGTAA+AGG | 0.497024 | 8.1:+9895358 | None:intergenic |
| CCAATCCTCAATCCAAACTC+TGG | 0.515661 | 8.1:-9895939 | MS.gene58724:CDS |
| GATTCGAAGCTCCGAACCTA+AGG | 0.522782 | 8.1:-9895600 | MS.gene58724:intron |
| AGGGTACTATGTAGTGGTTC+CGG | 0.526279 | 8.1:-9895425 | MS.gene58724:CDS |
| AACTCCTAACTACTGAACTT+GGG | 0.535868 | 8.1:-9894249 | MS.gene58724:CDS |
| TAAAAGAAAACTTGCAGACA+AGG | 0.540044 | 8.1:-9895458 | MS.gene58724:intron |
| TCAGCTCCAAGTACTGCAGT+TGG | 0.549417 | 8.1:+9894316 | None:intergenic |
| AGCTTGGATTAATCTAGACT+TGG | 0.550642 | 8.1:+9894773 | None:intergenic |
| CTCAATCCAAACTCTGGAGT+CGG | 0.555669 | 8.1:-9895933 | MS.gene58724:CDS |
| GTCAGAGGGACCAGTGACAT+AGG | 0.556032 | 8.1:+9895881 | None:intergenic |
| GGTTTAGACACCTATGTCAC+TGG | 0.564288 | 8.1:-9895891 | MS.gene58724:CDS |
| TAACATATAAGCTAAGGTTG+TGG | 0.568012 | 8.1:-9894805 | MS.gene58724:intron |
| CTATTTCCAGAAGTTTCACA+TGG | 0.576072 | 8.1:-9893899 | MS.gene58724:CDS |
| GGTGTAGTAGCACAGCAGCT+TGG | 0.583656 | 8.1:+9894757 | None:intergenic |
| CAGACAAGGTTGCAGCTGCA+GGG | 0.594774 | 8.1:-9895444 | MS.gene58724:CDS |
| AGCTGCAGGGTACTATGTAG+TGG | 0.595210 | 8.1:-9895431 | MS.gene58724:CDS |
| GGTGCATTTGAGCAGCACTC+AGG | 0.598252 | 8.1:+9895960 | None:intergenic |
| GTACAACATTGAAGATGCAA+TGG | 0.599750 | 8.1:-9893864 | MS.gene58724:CDS |
| CCATTCTAGTAAAAGTTGAT+GGG | 0.601271 | 8.1:+9893820 | None:intergenic |
| CTTACCCTTGATGTCATCCA+AGG | 0.603742 | 8.1:+9894722 | None:intergenic |
| AACTGTTTGAGGAGTTCTGG+AGG | 0.608744 | 8.1:+9894277 | None:intergenic |
| ATTGAAGCTTTGAAACACAA+AGG | 0.609340 | 8.1:-9895061 | MS.gene58724:CDS |
| CATCCAAGGTGATAAATGAA+GGG | 0.620674 | 8.1:+9894736 | None:intergenic |
| AACTTCAGAAACCATAAGAA+CGG | 0.621048 | 8.1:+9895848 | None:intergenic |
| ATCACCTTGGATGACATCAA+GGG | 0.624946 | 8.1:-9894726 | MS.gene58724:intron |
| CAGAAACCATAAGAACGGCT+AGG | 0.625936 | 8.1:+9895853 | None:intergenic |
| ACTCCTAACTACTGAACTTG+GGG | 0.626052 | 8.1:-9894248 | MS.gene58724:intron |
| ACGGCTAGGTTAGAGTCAGA+GGG | 0.630345 | 8.1:+9895867 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAATAACAAATTAAAT+AGG | + | chr8.1:9894800-9894819 | None:intergenic | 10.0% |
| !! | GTAGAATATATTTATAATAA+TGG | - | chr8.1:9895624-9895643 | MS.gene58724:intron | 10.0% |
| !! | TATATATGTTATGTGTTTAT+TGG | - | chr8.1:9895089-9895108 | MS.gene58724:CDS | 15.0% |
| !!! | ACATTTTCAAAATATTTGTT+CGG | + | chr8.1:9894608-9894627 | None:intergenic | 15.0% |
| !!! | AGTTTTCTTTTAAACAAAAA+AGG | + | chr8.1:9894302-9894321 | None:intergenic | 15.0% |
| !!! | GTTTTCTTTTAAACAAAAAA+GGG | + | chr8.1:9894301-9894320 | None:intergenic | 15.0% |
| !! | ATATGTTCAACTTATTGTAT+AGG | - | chr8.1:9894146-9894165 | MS.gene58724:intron | 20.0% |
| !! | GGAAAACAAAATTTATACTT+GGG | + | chr8.1:9894218-9894237 | None:intergenic | 20.0% |
| !! | TGGAAAACAAAATTTATACT+TGG | + | chr8.1:9894219-9894238 | None:intergenic | 20.0% |
| !!! | AAACATGTATGATTTTAAGA+AGG | + | chr8.1:9895159-9895178 | None:intergenic | 20.0% |
| !!! | TCATTTTACAAAACTTTACT+TGG | + | chr8.1:9894239-9894258 | None:intergenic | 20.0% |
| ! | AAAAGTTATGCAAAGCTTTA+GGG | + | chr8.1:9895784-9895803 | None:intergenic | 25.0% |
| ! | AACCTTAGCTTATATGTTAA+AGG | + | chr8.1:9894962-9894981 | None:intergenic | 25.0% |
| ! | AATACTAATGTCATAAAGGT+AGG | + | chr8.1:9894554-9894573 | None:intergenic | 25.0% |
| ! | ACCTTAGCTTATATGTTAAA+GGG | + | chr8.1:9894961-9894980 | None:intergenic | 25.0% |
| ! | ATAGCTTAGTAGTTAACATT+TGG | - | chr8.1:9895406-9895425 | MS.gene58724:CDS | 25.0% |
| ! | ATTAAAATCATCCATACCTT+AGG | + | chr8.1:9894187-9894206 | None:intergenic | 25.0% |
| ! | ATTAGTTGTGATGCAAAATT+TGG | - | chr8.1:9894274-9894293 | MS.gene58724:CDS | 25.0% |
| ! | TAAATAGGATGAAAATAAGC+AGG | + | chr8.1:9894785-9894804 | None:intergenic | 25.0% |
| ! | TAATTACTCAGTTCATTGAT+TGG | - | chr8.1:9894924-9894943 | MS.gene58724:intron | 25.0% |
| ! | TACCAATACTAATGTCATAA+AGG | + | chr8.1:9894558-9894577 | None:intergenic | 25.0% |
| ! | TACCTTTATGACATTAGTAT+TGG | - | chr8.1:9894553-9894572 | MS.gene58724:intron | 25.0% |
| ! | TTAGTTGTGATGCAAAATTT+GGG | - | chr8.1:9894275-9894294 | MS.gene58724:CDS | 25.0% |
| !! | AAACATTAAAGTGCTAAAAG+AGG | + | chr8.1:9893966-9893985 | None:intergenic | 25.0% |
| !! | AATCATACATGTTTTGCAAA+AGG | - | chr8.1:9895165-9895184 | MS.gene58724:intron | 25.0% |
| !! | TGAATATGTGATTCTGTTTT+TGG | - | chr8.1:9894063-9894082 | MS.gene58724:intron | 25.0% |
| !! | TTAATGTTGTACGATTTTGT+CGG | + | chr8.1:9895724-9895743 | None:intergenic | 25.0% |
| !!! | AACATTTGGTGTTAATTTCA+GGG | - | chr8.1:9895420-9895439 | MS.gene58724:CDS | 25.0% |
| !!! | ATGAACTAATTTGTTCTTTC+AGG | - | chr8.1:9895829-9895848 | MS.gene58724:intron | 25.0% |
| !!! | GAAAAACCATTTGCTAATTT+TGG | - | chr8.1:9895290-9895309 | MS.gene58724:intron | 25.0% |
| !!! | GCTTTTTTTTAGTGTTTCTT+CGG | - | chr8.1:9895655-9895674 | MS.gene58724:intron | 25.0% |
| !!! | TAACATTTGGTGTTAATTTC+AGG | - | chr8.1:9895419-9895438 | MS.gene58724:CDS | 25.0% |
| !!! | TATGCTTTTTGTCATATACA+TGG | - | chr8.1:9894851-9894870 | MS.gene58724:intron | 25.0% |
| AACTTCAGAAACCATAAGAA+CGG | + | chr8.1:9893923-9893942 | None:intergenic | 30.0% | |
| ACCATTCTAGTAAAAGTTGA+TGG | + | chr8.1:9895952-9895971 | None:intergenic | 30.0% | |
| GAAAAGTTATGCAAAGCTTT+AGG | + | chr8.1:9895785-9895804 | None:intergenic | 30.0% | |
| TAAAAGAAAACTTGCAGACA+AGG | - | chr8.1:9894310-9894329 | MS.gene58724:CDS | 30.0% | |
| TAACATATAAGCTAAGGTTG+TGG | - | chr8.1:9894963-9894982 | MS.gene58724:intron | 30.0% | |
| TCCCTTTAACATATAAGCTA+AGG | - | chr8.1:9894957-9894976 | MS.gene58724:intron | 30.0% | |
| TGTTTCAAAGCTTCAATTAC+TGG | + | chr8.1:9894704-9894723 | None:intergenic | 30.0% | |
| TTGAGATGTTACAAAGATGA+AGG | + | chr8.1:9895560-9895579 | None:intergenic | 30.0% | |
| ! | CCATTCTAGTAAAAGTTGAT+GGG | + | chr8.1:9895951-9895970 | None:intergenic | 30.0% |
| ! | CTAAAAGAGGAAGAGTTTTA+AGG | + | chr8.1:9893953-9893972 | None:intergenic | 30.0% |
| !! | ACATTTGGTGTTAATTTCAG+GGG | - | chr8.1:9895421-9895440 | MS.gene58724:CDS | 30.0% |
| !! | ATTGAAGCTTTGAAACACAA+AGG | - | chr8.1:9894707-9894726 | MS.gene58724:intron | 30.0% |
| !! | TTTTCCTCCTAATTTAGAGT+CGG | + | chr8.1:9895275-9895294 | None:intergenic | 30.0% |
| !!! | CATTTTTTCGTGTTTTGATG+AGG | - | chr8.1:9895322-9895341 | MS.gene58724:intron | 30.0% |
| !!! | CTTATGGTTTCTGAAGTTTT+TGG | - | chr8.1:9893925-9893944 | MS.gene58724:intron | 30.0% |
| !!! | TTAGCATTTTCTGAAGTGAA+GGG | + | chr8.1:9894386-9894405 | None:intergenic | 30.0% |
| AACTCCTAACTACTGAACTT+GGG | - | chr8.1:9895519-9895538 | MS.gene58724:intron | 35.0% | |
| AACTTACCACTGTAGCATTA+TGG | + | chr8.1:9895378-9895397 | None:intergenic | 35.0% | |
| AATCATCCATACCTTAGGTT+CGG | + | chr8.1:9894182-9894201 | None:intergenic | 35.0% | |
| AGCTTGGATTAATCTAGACT+TGG | + | chr8.1:9894998-9895017 | None:intergenic | 35.0% | |
| ATGTTACAAAGATGAAGGAG+AGG | + | chr8.1:9895555-9895574 | None:intergenic | 35.0% | |
| CATCCAAGGTGATAAATGAA+GGG | + | chr8.1:9895035-9895054 | None:intergenic | 35.0% | |
| CTATTTCCAGAAGTTTCACA+TGG | - | chr8.1:9895869-9895888 | MS.gene58724:CDS | 35.0% | |
| GATGAAAATAAGCAGGAATC+AGG | + | chr8.1:9894778-9894797 | None:intergenic | 35.0% | |
| GGATCTCCGTATAAAAAATC+CGG | + | chr8.1:9894365-9894384 | None:intergenic | 35.0% | |
| GTACAACATTGAAGATGCAA+TGG | - | chr8.1:9895904-9895923 | MS.gene58724:CDS | 35.0% | |
| GTGCTTCCAAAATTAGCAAA+TGG | + | chr8.1:9895299-9895318 | None:intergenic | 35.0% | |
| TCATCCAAGGTGATAAATGA+AGG | + | chr8.1:9895036-9895055 | None:intergenic | 35.0% | |
| TCTGTTAACCAAACAGGTAA+AGG | + | chr8.1:9894413-9894432 | None:intergenic | 35.0% | |
| TGCTACAGTGGTAAGTTATA+TGG | - | chr8.1:9895381-9895400 | MS.gene58724:CDS | 35.0% | |
| ! | ACTTTTCTCTTTCTGCATTG+AGG | - | chr8.1:9895798-9895817 | MS.gene58724:intron | 35.0% |
| ! | CCCATCAACTTTTACTAGAA+TGG | - | chr8.1:9895948-9895967 | MS.gene58724:CDS | 35.0% |
| ! | TCTGAAGTAAAAGAACTCAC+TGG | + | chr8.1:9894443-9894462 | None:intergenic | 35.0% |
| ! | TTTCCTCCTAATTTAGAGTC+GGG | + | chr8.1:9895274-9895293 | None:intergenic | 35.0% |
| !! | AACCTCCAAGTTTTTCAACA+TGG | + | chr8.1:9893861-9893880 | None:intergenic | 35.0% |
| !!! | CACAAAGGTGTTTTGTCTAT+AGG | - | chr8.1:9894722-9894741 | MS.gene58724:intron | 35.0% |
| !!! | GTGGTTCCGGATTTTTTATA+CGG | - | chr8.1:9894356-9894375 | MS.gene58724:intron | 35.0% |
| !!! | GTTAGCATTTTCTGAAGTGA+AGG | + | chr8.1:9894387-9894406 | None:intergenic | 35.0% |
| ACACCCTTCATTTATCACCT+TGG | - | chr8.1:9895029-9895048 | MS.gene58724:CDS | 40.0% | |
| ACTCCTAACTACTGAACTTG+GGG | - | chr8.1:9895520-9895539 | MS.gene58724:intron | 40.0% | |
| AGAAAGGCGATGATATACAC+TGG | + | chr8.1:9895202-9895221 | None:intergenic | 40.0% | |
| AGTATTCCAACTGCAGTACT+TGG | - | chr8.1:9895446-9895465 | MS.gene58724:CDS | 40.0% | |
| ATCACCTTGGATGACATCAA+GGG | - | chr8.1:9895042-9895061 | MS.gene58724:CDS | 40.0% | |
| CAACTCCTAACTACTGAACT+TGG | - | chr8.1:9895518-9895537 | MS.gene58724:intron | 40.0% | |
| CTAACAGACCTTTACCTGTT+TGG | - | chr8.1:9894402-9894421 | MS.gene58724:intron | 40.0% | |
| GAAAGACCATAATGCTACAG+TGG | - | chr8.1:9895369-9895388 | MS.gene58724:CDS | 40.0% | |
| GAAGTAAAAGAACTCACTGG+TGG | + | chr8.1:9894440-9894459 | None:intergenic | 40.0% | |
| GGATGATCTGTTAACCAAAC+AGG | + | chr8.1:9894419-9894438 | None:intergenic | 40.0% | |
| GTCTATCCCGACTCTAAATT+AGG | - | chr8.1:9895265-9895284 | MS.gene58724:intron | 40.0% | |
| TATCACCTTGGATGACATCA+AGG | - | chr8.1:9895041-9895060 | MS.gene58724:CDS | 40.0% | |
| TATCCCGACTCTAAATTAGG+AGG | - | chr8.1:9895268-9895287 | MS.gene58724:intron | 40.0% | |
| TCAAACTGTTTGAGGAGTTC+TGG | + | chr8.1:9895497-9895516 | None:intergenic | 40.0% | |
| TCTCTTTCTGCATTGAGGTA+TGG | - | chr8.1:9895803-9895822 | MS.gene58724:intron | 40.0% | |
| TTTAGTGTTTCTTCGGACGT+AGG | - | chr8.1:9895662-9895681 | MS.gene58724:intron | 40.0% | |
| AAGGCGATGATATACACTGG+TGG | + | chr8.1:9895199-9895218 | None:intergenic | 45.0% | |
| CAGAAACCATAAGAACGGCT+AGG | + | chr8.1:9893918-9893937 | None:intergenic | 45.0% | |
| CCAATCCTCAATCCAAACTC+TGG | - | chr8.1:9893829-9893848 | MS.gene58724:CDS | 45.0% | |
| CCAGAGTTTGGATTGAGGAT+TGG | + | chr8.1:9893832-9893851 | None:intergenic | 45.0% | |
| CTACCCCAAGTTCAGTAGTT+AGG | + | chr8.1:9895526-9895545 | None:intergenic | 45.0% | |
| CTCTAACCTAGCCGTTCTTA+TGG | - | chr8.1:9893909-9893928 | MS.gene58724:CDS | 45.0% | |
| CTTACCCTTGATGTCATCCA+AGG | + | chr8.1:9895049-9895068 | None:intergenic | 45.0% | |
| GGAGTTGCTCAAACTGTTTG+AGG | + | chr8.1:9895505-9895524 | None:intergenic | 45.0% | |
| GGCCATGTTGAAAAACTTGG+AGG | - | chr8.1:9893856-9893875 | MS.gene58724:CDS | 45.0% | |
| GGTTTAGACACCTATGTCAC+TGG | - | chr8.1:9893877-9893896 | MS.gene58724:CDS | 45.0% | |
| GTCGGCCATGTTGAAAAACT+TGG | - | chr8.1:9893853-9893872 | MS.gene58724:CDS | 45.0% | |
| TTCCAGAAGTTTCACATGGC+TGG | - | chr8.1:9895873-9895892 | MS.gene58724:CDS | 45.0% | |
| TTTCACATGGCTGGACTATC+AGG | - | chr8.1:9895882-9895901 | MS.gene58724:CDS | 45.0% | |
| ! | AACTGTTTGAGGAGTTCTGG+AGG | + | chr8.1:9895494-9895513 | None:intergenic | 45.0% |
| ! | AGGAGCTGCCTCTTTTTGTT+GGG | - | chr8.1:9894742-9894761 | MS.gene58724:CDS | 45.0% |
| ! | AGGGTACTATGTAGTGGTTC+CGG | - | chr8.1:9894343-9894362 | MS.gene58724:intron | 45.0% |
| ! | TAGGAGCTGCCTCTTTTTGT+TGG | - | chr8.1:9894741-9894760 | MS.gene58724:CDS | 45.0% |
| !! | CTCAATCCAAACTCTGGAGT+CGG | - | chr8.1:9893835-9893854 | MS.gene58724:CDS | 45.0% |
| AACGGCTAGGTTAGAGTCAG+AGG | + | chr8.1:9893905-9893924 | None:intergenic | 50.0% | |
| ACGGCTAGGTTAGAGTCAGA+GGG | + | chr8.1:9893904-9893923 | None:intergenic | 50.0% | |
| ATAGACCAAGCCGACTGACA+CGG | + | chr8.1:9895251-9895270 | None:intergenic | 50.0% | |
| CGACTCCAGAGTTTGGATTG+AGG | + | chr8.1:9893837-9893856 | None:intergenic | 50.0% | |
| CTACGTCAAGGTCACGAGAA+AGG | + | chr8.1:9895218-9895237 | None:intergenic | 50.0% | |
| CTCACCACCCCAACAAAAAG+AGG | + | chr8.1:9894753-9894772 | None:intergenic | 50.0% | |
| CTTTCTCGTGACCTTGACGT+AGG | - | chr8.1:9895216-9895235 | MS.gene58724:intron | 50.0% | |
| GAAGCTCCGAACCTAAGGTA+TGG | - | chr8.1:9894173-9894192 | MS.gene58724:intron | 50.0% | |
| GATTCGAAGCTCCGAACCTA+AGG | - | chr8.1:9894168-9894187 | MS.gene58724:intron | 50.0% | |
| GTCCAGCCATGTGAAACTTC+TGG | + | chr8.1:9895878-9895897 | None:intergenic | 50.0% | |
| ! | AGCTGCAGGGTACTATGTAG+TGG | - | chr8.1:9894337-9894356 | MS.gene58724:intron | 50.0% |
| ! | GGAGCTGCCTCTTTTTGTTG+GGG | - | chr8.1:9894743-9894762 | MS.gene58724:CDS | 50.0% |
| ! | TCAGCTCCAAGTACTGCAGT+TGG | + | chr8.1:9895455-9895474 | None:intergenic | 50.0% |
| CAGACAAGGTTGCAGCTGCA+GGG | - | chr8.1:9894324-9894343 | MS.gene58724:CDS | 55.0% | |
| GCTAGACAACCCGTGTCAGT+CGG | - | chr8.1:9895238-9895257 | MS.gene58724:intron | 55.0% | |
| GGGTTGTCTAGCCTACGTCA+AGG | + | chr8.1:9895230-9895249 | None:intergenic | 55.0% | |
| GGTGCATTTGAGCAGCACTC+AGG | + | chr8.1:9893811-9893830 | None:intergenic | 55.0% | |
| GGTGTAGTAGCACAGCAGCT+TGG | + | chr8.1:9895014-9895033 | None:intergenic | 55.0% | |
| GTCAGAGGGACCAGTGACAT+AGG | + | chr8.1:9893890-9893909 | None:intergenic | 55.0% | |
| TAGACCAAGCCGACTGACAC+GGG | + | chr8.1:9895250-9895269 | None:intergenic | 55.0% | |
| ! | ACATGGCCGACTCCAGAGTT+TGG | + | chr8.1:9893844-9893863 | None:intergenic | 55.0% |
| ! | GCTGCCTCTTTTTGTTGGGG+TGG | - | chr8.1:9894746-9894765 | MS.gene58724:CDS | 55.0% |
| ACAACCCGTGTCAGTCGGCT+TGG | - | chr8.1:9895243-9895262 | MS.gene58724:intron | 60.0% | |
| GCAGACAAGGTTGCAGCTGC+AGG | - | chr8.1:9894323-9894342 | MS.gene58724:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 9893799 | 9895991 | 9893799 | ID=MS.gene58724 |
| chr8.1 | mRNA | 9893799 | 9895991 | 9893799 | ID=MS.gene58724.t1;Parent=MS.gene58724 |
| chr8.1 | exon | 9895844 | 9895991 | 9895844 | ID=MS.gene58724.t1.exon1;Parent=MS.gene58724.t1 |
| chr8.1 | CDS | 9895844 | 9895991 | 9895844 | ID=cds.MS.gene58724.t1;Parent=MS.gene58724.t1 |
| chr8.1 | exon | 9895601 | 9895622 | 9895601 | ID=MS.gene58724.t1.exon2;Parent=MS.gene58724.t1 |
| chr8.1 | CDS | 9895601 | 9895622 | 9895601 | ID=cds.MS.gene58724.t1;Parent=MS.gene58724.t1 |
| chr8.1 | exon | 9895348 | 9895474 | 9895348 | ID=MS.gene58724.t1.exon3;Parent=MS.gene58724.t1 |
| chr8.1 | CDS | 9895348 | 9895474 | 9895348 | ID=cds.MS.gene58724.t1;Parent=MS.gene58724.t1 |
| chr8.1 | exon | 9895023 | 9895113 | 9895023 | ID=MS.gene58724.t1.exon4;Parent=MS.gene58724.t1 |
| chr8.1 | CDS | 9895023 | 9895113 | 9895023 | ID=cds.MS.gene58724.t1;Parent=MS.gene58724.t1 |
| chr8.1 | exon | 9894727 | 9894816 | 9894727 | ID=MS.gene58724.t1.exon5;Parent=MS.gene58724.t1 |
| chr8.1 | CDS | 9894727 | 9894816 | 9894727 | ID=cds.MS.gene58724.t1;Parent=MS.gene58724.t1 |
| chr8.1 | exon | 9894249 | 9894349 | 9894249 | ID=MS.gene58724.t1.exon6;Parent=MS.gene58724.t1 |
| chr8.1 | CDS | 9894249 | 9894349 | 9894249 | ID=cds.MS.gene58724.t1;Parent=MS.gene58724.t1 |
| chr8.1 | exon | 9893799 | 9893939 | 9893799 | ID=MS.gene58724.t1.exon7;Parent=MS.gene58724.t1 |
| chr8.1 | CDS | 9893799 | 9893939 | 9893799 | ID=cds.MS.gene58724.t1;Parent=MS.gene58724.t1 |
| Gene Sequence |
| Protein sequence |
