Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61194.t1 | XP_013453855.1 | 97.4 | 265 | 7 | 0 | 1 | 265 | 4 | 268 | 6.00E-150 | 540 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61194.t1 | Q39224 | 54.3 | 269 | 117 | 4 | 3 | 265 | 10 | 278 | 2.0e-85 | 317.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61194.t1 | A0A072UER0 | 97.4 | 265 | 7 | 0 | 1 | 265 | 4 | 268 | 4.3e-150 | 540.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049232 | MS.gene61194 | -0.804245 | 2.37E-49 | -1.69E-46 |
| MS.gene049259 | MS.gene61194 | 0.814216 | 1.72E-51 | -1.69E-46 |
| MS.gene049320 | MS.gene61194 | -0.802349 | 5.85E-49 | -1.69E-46 |
| MS.gene049549 | MS.gene61194 | 0.81459 | 1.43E-51 | -1.69E-46 |
| MS.gene049611 | MS.gene61194 | 0.837832 | 4.12E-57 | -1.69E-46 |
| MS.gene049634 | MS.gene61194 | 0.86805 | 8.71E-66 | -1.69E-46 |
| MS.gene050095 | MS.gene61194 | 0.825201 | 5.33E-54 | -1.69E-46 |
| MS.gene050096 | MS.gene61194 | 0.823426 | 1.39E-53 | -1.69E-46 |
| MS.gene050216 | MS.gene61194 | -0.833328 | 5.68E-56 | -1.69E-46 |
| MS.gene050380 | MS.gene61194 | 0.841886 | 3.62E-58 | -1.69E-46 |
| MS.gene050381 | MS.gene61194 | 0.868226 | 7.64E-66 | -1.69E-46 |
| MS.gene050612 | MS.gene61194 | -0.811722 | 6.07E-51 | -1.69E-46 |
| MS.gene05079 | MS.gene61194 | 0.834738 | 2.52E-56 | -1.69E-46 |
| MS.gene050809 | MS.gene61194 | 0.825658 | 4.16E-54 | -1.69E-46 |
| MS.gene050868 | MS.gene61194 | -0.821175 | 4.64E-53 | -1.69E-46 |
| MS.gene050871 | MS.gene61194 | -0.823295 | 1.50E-53 | -1.69E-46 |
| MS.gene050883 | MS.gene61194 | 0.803961 | 2.72E-49 | -1.69E-46 |
| MS.gene051044 | MS.gene61194 | 0.82159 | 3.72E-53 | -1.69E-46 |
| MS.gene05104 | MS.gene61194 | 0.847088 | 1.44E-59 | -1.69E-46 |
| MS.gene051127 | MS.gene61194 | 0.859536 | 3.87E-63 | -1.69E-46 |
| MS.gene051138 | MS.gene61194 | 0.845578 | 3.72E-59 | -1.69E-46 |
| MS.gene051632 | MS.gene61194 | 0.834922 | 2.26E-56 | -1.69E-46 |
| MS.gene051863 | MS.gene61194 | 0.818647 | 1.76E-52 | -1.69E-46 |
| MS.gene052211 | MS.gene61194 | 0.811713 | 6.10E-51 | -1.69E-46 |
| MS.gene05240 | MS.gene61194 | 0.83414 | 3.56E-56 | -1.69E-46 |
| MS.gene052805 | MS.gene61194 | 0.825307 | 5.04E-54 | -1.69E-46 |
| MS.gene053031 | MS.gene61194 | 0.811966 | 5.37E-51 | -1.69E-46 |
| MS.gene053033 | MS.gene61194 | 0.820605 | 6.28E-53 | -1.69E-46 |
| MS.gene053069 | MS.gene61194 | 0.805996 | 1.02E-49 | -1.69E-46 |
| MS.gene053406 | MS.gene61194 | 0.816709 | 4.81E-52 | -1.69E-46 |
| MS.gene053420 | MS.gene61194 | 0.878727 | 2.22E-69 | -1.69E-46 |
| MS.gene053488 | MS.gene61194 | 0.862419 | 5.14E-64 | -1.69E-46 |
| MS.gene053561 | MS.gene61194 | 0.848861 | 4.68E-60 | -1.69E-46 |
| MS.gene053887 | MS.gene61194 | 0.831728 | 1.42E-55 | -1.69E-46 |
| MS.gene054056 | MS.gene61194 | 0.81801 | 2.45E-52 | -1.69E-46 |
| MS.gene054146 | MS.gene61194 | 0.802822 | 4.67E-49 | -1.69E-46 |
| MS.gene054290 | MS.gene61194 | 0.824266 | 8.86E-54 | -1.69E-46 |
| MS.gene054706 | MS.gene61194 | 0.804827 | 1.79E-49 | -1.69E-46 |
| MS.gene054708 | MS.gene61194 | 0.816428 | 5.56E-52 | -1.69E-46 |
| MS.gene05483 | MS.gene61194 | 0.802347 | 5.86E-49 | -1.69E-46 |
| MS.gene055124 | MS.gene61194 | 0.904596 | 1.04E-79 | -1.69E-46 |
| MS.gene055154 | MS.gene61194 | 0.878967 | 1.83E-69 | -1.69E-46 |
| MS.gene055202 | MS.gene61194 | 0.850983 | 1.19E-60 | -1.69E-46 |
| MS.gene055240 | MS.gene61194 | 0.812302 | 4.54E-51 | -1.69E-46 |
| MS.gene055942 | MS.gene61194 | 0.836761 | 7.74E-57 | -1.69E-46 |
| MS.gene055959 | MS.gene61194 | 0.895861 | 6.41E-76 | -1.69E-46 |
| MS.gene056224 | MS.gene61194 | 0.838423 | 2.90E-57 | -1.69E-46 |
| MS.gene056311 | MS.gene61194 | 0.801527 | 8.63E-49 | -1.69E-46 |
| MS.gene056313 | MS.gene61194 | 0.804689 | 1.91E-49 | -1.69E-46 |
| MS.gene056359 | MS.gene61194 | 0.812524 | 4.06E-51 | -1.69E-46 |
| MS.gene056422 | MS.gene61194 | -0.813372 | 2.65E-51 | -1.69E-46 |
| MS.gene056504 | MS.gene61194 | -0.813347 | 2.68E-51 | -1.69E-46 |
| MS.gene056590 | MS.gene61194 | 0.805126 | 1.55E-49 | -1.69E-46 |
| MS.gene056591 | MS.gene61194 | 0.804557 | 2.04E-49 | -1.69E-46 |
| MS.gene056856 | MS.gene61194 | 0.861857 | 7.64E-64 | -1.69E-46 |
| MS.gene056857 | MS.gene61194 | 0.805184 | 1.51E-49 | -1.69E-46 |
| MS.gene057544 | MS.gene61194 | 0.836354 | 9.83E-57 | -1.69E-46 |
| MS.gene057549 | MS.gene61194 | 0.842831 | 2.03E-58 | -1.69E-46 |
| MS.gene057550 | MS.gene61194 | 0.833473 | 5.23E-56 | -1.69E-46 |
| MS.gene058068 | MS.gene61194 | 0.808488 | 3.02E-50 | -1.69E-46 |
| MS.gene058093 | MS.gene61194 | 0.901528 | 2.45E-78 | -1.69E-46 |
| MS.gene058099 | MS.gene61194 | 0.886605 | 2.96E-72 | -1.69E-46 |
| MS.gene058108 | MS.gene61194 | 0.862001 | 6.90E-64 | -1.69E-46 |
| MS.gene058109 | MS.gene61194 | 0.879613 | 1.08E-69 | -1.69E-46 |
| MS.gene058111 | MS.gene61194 | 0.801597 | 8.35E-49 | -1.69E-46 |
| MS.gene058117 | MS.gene61194 | 0.815634 | 8.36E-52 | -1.69E-46 |
| MS.gene058171 | MS.gene61194 | 0.880609 | 4.77E-70 | -1.69E-46 |
| MS.gene058173 | MS.gene61194 | 0.87258 | 2.85E-67 | -1.69E-46 |
| MS.gene058175 | MS.gene61194 | 0.882138 | 1.34E-70 | -1.69E-46 |
| MS.gene058177 | MS.gene61194 | 0.810043 | 1.40E-50 | -1.69E-46 |
| MS.gene058179 | MS.gene61194 | 0.876257 | 1.61E-68 | -1.69E-46 |
| MS.gene058180 | MS.gene61194 | 0.855927 | 4.54E-62 | -1.69E-46 |
| MS.gene058268 | MS.gene61194 | 0.829904 | 3.97E-55 | -1.69E-46 |
| MS.gene058269 | MS.gene61194 | 0.831009 | 2.13E-55 | -1.69E-46 |
| MS.gene058341 | MS.gene61194 | 0.800532 | 1.38E-48 | -1.69E-46 |
| MS.gene058603 | MS.gene61194 | 0.830998 | 2.14E-55 | -1.69E-46 |
| MS.gene058840 | MS.gene61194 | 0.852907 | 3.39E-61 | -1.69E-46 |
| MS.gene059037 | MS.gene61194 | 0.902219 | 1.21E-78 | -1.69E-46 |
| MS.gene059038 | MS.gene61194 | 0.884378 | 2.02E-71 | -1.69E-46 |
| MS.gene059044 | MS.gene61194 | 0.804133 | 2.50E-49 | -1.69E-46 |
| MS.gene059045 | MS.gene61194 | 0.880585 | 4.86E-70 | -1.69E-46 |
| MS.gene05913 | MS.gene61194 | -0.814034 | 1.89E-51 | -1.69E-46 |
| MS.gene059367 | MS.gene61194 | -0.811587 | 6.50E-51 | -1.69E-46 |
| MS.gene059690 | MS.gene61194 | 0.831117 | 2.00E-55 | -1.69E-46 |
| MS.gene059691 | MS.gene61194 | 0.814451 | 1.53E-51 | -1.69E-46 |
| MS.gene059694 | MS.gene61194 | 0.837133 | 6.22E-57 | -1.69E-46 |
| MS.gene059697 | MS.gene61194 | 0.83707 | 6.45E-57 | -1.69E-46 |
| MS.gene059865 | MS.gene61194 | -0.831833 | 1.33E-55 | -1.69E-46 |
| MS.gene059916 | MS.gene61194 | 0.815011 | 1.15E-51 | -1.69E-46 |
| MS.gene059953 | MS.gene61194 | 0.812271 | 4.61E-51 | -1.69E-46 |
| MS.gene059955 | MS.gene61194 | 0.815619 | 8.43E-52 | -1.69E-46 |
| MS.gene060205 | MS.gene61194 | 0.807128 | 5.88E-50 | -1.69E-46 |
| MS.gene060482 | MS.gene61194 | -0.808819 | 2.57E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 64 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCAACCAGAAAATGTTAT+TGG | 0.207405 | 5.3:+37095548 | MS.gene61194:CDS |
| TGGAAGAGAAGAAGAAATTT+TGG | 0.275911 | 5.3:+37094803 | MS.gene61194:CDS |
| CGAGGATTCCTTTCATCTAA+TGG | 0.295402 | 5.3:-37094922 | None:intergenic |
| CTGGAGGCCTTCTATCTCAT+TGG | 0.331238 | 5.3:-37095618 | None:intergenic |
| CCAAATCCTTCCATGTCATT+TGG | 0.354285 | 5.3:-37094832 | None:intergenic |
| GAGTAGGAAACAAACCTAAA+TGG | 0.377754 | 5.3:-37094967 | None:intergenic |
| CCAAATGACATGGAAGGATT+TGG | 0.380420 | 5.3:+37094832 | MS.gene61194:CDS |
| ATCGACCTTGGTAAATTGTT+AGG | 0.381623 | 5.3:+37093952 | MS.gene61194:CDS |
| ATGTTGATGACAAATGCATT+AGG | 0.394467 | 5.3:-37095680 | None:intergenic |
| AGACCTTGCTTGTAAAGAAT+GGG | 0.400804 | 5.3:+37094002 | MS.gene61194:CDS |
| CTAAATGGTTGGAAAATACT+TGG | 0.413891 | 5.3:-37094952 | None:intergenic |
| GTTGATTGAAAAGGTAAAGA+TGG | 0.428723 | 5.3:+37094753 | MS.gene61194:CDS |
| ACATGAGTAGGGTCTTGATT+TGG | 0.433810 | 5.3:-37093895 | None:intergenic |
| GGCCTTCTATCTCATTGGCT+TGG | 0.437774 | 5.3:-37095613 | None:intergenic |
| CTCCAAGCCAATGAGATAGA+AGG | 0.438508 | 5.3:+37095611 | MS.gene61194:CDS |
| AATTTACCAAGGTCGATAAC+TGG | 0.453044 | 5.3:-37093946 | None:intergenic |
| GCATTAGGGAGGGGTTGAAC+AGG | 0.453363 | 5.3:-37095665 | None:intergenic |
| CAACACTTCGTTGATTGAAA+AGG | 0.453373 | 5.3:+37094744 | MS.gene61194:CDS |
| TAGACCTTGCTTGTAAAGAA+TGG | 0.454171 | 5.3:+37094001 | MS.gene61194:CDS |
| TTGCTCTGGAACTTCAATGA+TGG | 0.454680 | 5.3:-37093863 | None:intergenic |
| CATCAACATTGGAGATATGT+TGG | 0.457594 | 5.3:+37095694 | MS.gene61194:CDS |
| AATCATTAGCCAAATGGAAA+AGG | 0.476290 | 5.3:+37095442 | MS.gene61194:CDS |
| TTGATTGAAAAGGTAAAGAT+GGG | 0.477556 | 5.3:+37094754 | MS.gene61194:CDS |
| TGTTGATGACAAATGCATTA+GGG | 0.478792 | 5.3:-37095679 | None:intergenic |
| TTTGGACGAAGAAATTGCTC+TGG | 0.479151 | 5.3:-37093877 | None:intergenic |
| TCTTCTTCTCTTCCACTGGT+AGG | 0.479236 | 5.3:-37094795 | None:intergenic |
| CTGAATCCTCATTCTGATGT+TGG | 0.486800 | 5.3:+37095572 | MS.gene61194:CDS |
| AATTTCTTCTTCTCTTCCAC+TGG | 0.489167 | 5.3:-37094799 | None:intergenic |
| AATGCATTTGTCATCAACAT+TGG | 0.503596 | 5.3:+37095683 | MS.gene61194:CDS |
| CTATCTCATTGGCTTGGAGA+AGG | 0.505113 | 5.3:-37095607 | None:intergenic |
| CTGATGATCAGAAATTAGAA+TGG | 0.510997 | 5.3:+37094872 | MS.gene61194:CDS |
| CTCATTGGCTTGGAGAAGGA+TGG | 0.518636 | 5.3:-37095603 | None:intergenic |
| GGCCTCCAGATAAGAAAAGA+TGG | 0.530558 | 5.3:+37095632 | MS.gene61194:CDS |
| TGATGATCAGAAATTAGAAT+GGG | 0.530679 | 5.3:+37094873 | MS.gene61194:CDS |
| CTAATGGAAGTGTGGTAATG+AGG | 0.530737 | 5.3:-37094906 | None:intergenic |
| AACCCCATTCTTTACAAGCA+AGG | 0.534883 | 5.3:-37094005 | None:intergenic |
| AGGAAACAAACCTAAATGGT+TGG | 0.537689 | 5.3:-37094963 | None:intergenic |
| ACCTCATTGCTTGAGTAATG+TGG | 0.546838 | 5.3:-37095505 | None:intergenic |
| CCACACTTCCATTAGATGAA+AGG | 0.547315 | 5.3:+37094914 | MS.gene61194:CDS |
| TTGTGTTGAGCACATGAGTA+GGG | 0.549234 | 5.3:-37093906 | None:intergenic |
| CTTATGCAGATAATCAATCA+TGG | 0.550366 | 5.3:+37094718 | MS.gene61194:intron |
| GGCTTGGAGAAGGATGGTTA+AGG | 0.567568 | 5.3:-37095597 | None:intergenic |
| TTTGCAAGCTCGTGCACAGA+AGG | 0.571239 | 5.3:-37093835 | None:intergenic |
| ATGACAAATGCATTAGGGAG+GGG | 0.574452 | 5.3:-37095674 | None:intergenic |
| GATGACAAATGCATTAGGGA+GGG | 0.581365 | 5.3:-37095675 | None:intergenic |
| AAGGTTTGGAACCTCTCGAT+TGG | 0.588147 | 5.3:+37093810 | None:intergenic |
| AGAATTCTTAAGCCTACCAG+TGG | 0.596497 | 5.3:+37094783 | MS.gene61194:CDS |
| GACCTTGCTTGTAAAGAATG+GGG | 0.599209 | 5.3:+37094003 | MS.gene61194:CDS |
| AGATAAGAAAAGATGGACAA+TGG | 0.599638 | 5.3:+37095639 | MS.gene61194:CDS |
| CCTTTCATCTAATGGAAGTG+TGG | 0.601777 | 5.3:-37094914 | None:intergenic |
| CAAGTACCAGTTATCGACCT+TGG | 0.604034 | 5.3:+37093940 | MS.gene61194:CDS |
| CAACATTGGAGATATGTTGG+AGG | 0.605641 | 5.3:+37095697 | MS.gene61194:CDS |
| AAAATACTTGGAAATAAGCG+AGG | 0.612315 | 5.3:-37094940 | None:intergenic |
| TTGGCAAACTCCAAATGACA+TGG | 0.613342 | 5.3:+37094822 | MS.gene61194:CDS |
| TTTGTGTTGAGCACATGAGT+AGG | 0.618384 | 5.3:-37093907 | None:intergenic |
| CAAACTCCAAATGACATGGA+AGG | 0.624198 | 5.3:+37094826 | MS.gene61194:CDS |
| ACCACATTACTCAAGCAATG+AGG | 0.637197 | 5.3:+37095504 | MS.gene61194:CDS |
| AAGGCACCAACATCAGAATG+AGG | 0.637416 | 5.3:-37095578 | None:intergenic |
| ACATTACTCAAGCAATGAGG+TGG | 0.641618 | 5.3:+37095507 | MS.gene61194:CDS |
| TTTCTGGTTGAGGACATGGA+GGG | 0.655452 | 5.3:-37095538 | None:intergenic |
| TGATGACAAATGCATTAGGG+AGG | 0.655981 | 5.3:-37095676 | None:intergenic |
| CACAGAAGGTACCAATCGAG+AGG | 0.663153 | 5.3:-37093821 | None:intergenic |
| CTTCACCTAACAATTTACCA+AGG | 0.680448 | 5.3:-37093957 | None:intergenic |
| AGGTCGATAACTGGTACTTG+TGG | 0.691439 | 5.3:-37093937 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTCAAAAATAATAAAAAA+TGG | - | chr5.3:37095261-37095280 | None:intergenic | 10.0% |
| !! | ATTTATCTATATGATAATCA+TGG | - | chr5.3:37094114-37094133 | None:intergenic | 15.0% |
| !!! | AAATATACAAGTGTTTTTTA+CGG | - | chr5.3:37094193-37094212 | None:intergenic | 15.0% |
| !!! | ATAACAAATTTTGATTAATC+TGG | - | chr5.3:37095181-37095200 | None:intergenic | 15.0% |
| !! | GATTAATAATAATTCAAACC+TGG | - | chr5.3:37094035-37094054 | None:intergenic | 20.0% |
| !! | TATAGATACAAGTTAATGAA+GGG | + | chr5.3:37094650-37094669 | MS.gene61194:intron | 20.0% |
| !! | TATGTAAGTTGCAAAATAAA+TGG | + | chr5.3:37094086-37094105 | MS.gene61194:intron | 20.0% |
| !!! | ATTCAATCATTTTGTTCTAA+AGG | - | chr5.3:37095323-37095342 | None:intergenic | 20.0% |
| !!! | TGCAAAATTTGTCTAAAATT+CGG | - | chr5.3:37095292-37095311 | None:intergenic | 20.0% |
| !!! | TTTAATTTGTAACACATCAT+TGG | + | chr5.3:37094448-37094467 | MS.gene61194:intron | 20.0% |
| ! | AAAATGTGTTCAATACAATG+TGG | + | chr5.3:37095068-37095087 | MS.gene61194:intron | 25.0% |
| ! | CAATAAGTTGTGATATATGT+TGG | + | chr5.3:37094337-37094356 | MS.gene61194:intron | 25.0% |
| ! | CACTAATTAACAAATTGACA+TGG | + | chr5.3:37095358-37095377 | MS.gene61194:intron | 25.0% |
| ! | CTATAGATACAAGTTAATGA+AGG | + | chr5.3:37094649-37094668 | MS.gene61194:intron | 25.0% |
| ! | GAAATAACAACAGAAATTAG+AGG | + | chr5.3:37095212-37095231 | MS.gene61194:intron | 25.0% |
| ! | TGATGATCAGAAATTAGAAT+GGG | + | chr5.3:37094873-37094892 | MS.gene61194:CDS | 25.0% |
| ! | TTGATTGAAAAGGTAAAGAT+GGG | + | chr5.3:37094754-37094773 | MS.gene61194:CDS | 25.0% |
| !! | TTTTACAATCATTAGCCAAA+TGG | + | chr5.3:37095436-37095455 | MS.gene61194:CDS | 25.0% |
| !!! | TTTTGAAACAACAATAGTCT+TGG | - | chr5.3:37094569-37094588 | None:intergenic | 25.0% |
| AAAATACTTGGAAATAAGCG+AGG | - | chr5.3:37094943-37094962 | None:intergenic | 30.0% | |
| AATCATTAGCCAAATGGAAA+AGG | + | chr5.3:37095442-37095461 | MS.gene61194:CDS | 30.0% | |
| AATGCATTTGTCATCAACAT+TGG | + | chr5.3:37095683-37095702 | MS.gene61194:CDS | 30.0% | |
| ACATCAATTATTGAGAGAGT+AGG | - | chr5.3:37094986-37095005 | None:intergenic | 30.0% | |
| AGATAAGAAAAGATGGACAA+TGG | + | chr5.3:37095639-37095658 | MS.gene61194:CDS | 30.0% | |
| ATCAAGTTCGTGAAGAAAAA+TGG | - | chr5.3:37094678-37094697 | None:intergenic | 30.0% | |
| CTAAATGGTTGGAAAATACT+TGG | - | chr5.3:37094955-37094974 | None:intergenic | 30.0% | |
| CTGATGATCAGAAATTAGAA+TGG | + | chr5.3:37094872-37094891 | MS.gene61194:CDS | 30.0% | |
| CTTATGCAGATAATCAATCA+TGG | + | chr5.3:37094718-37094737 | MS.gene61194:intron | 30.0% | |
| GTTGATTGAAAAGGTAAAGA+TGG | + | chr5.3:37094753-37094772 | MS.gene61194:CDS | 30.0% | |
| TTATGAATATGCCATTCAAC+AGG | + | chr5.3:37094596-37094615 | MS.gene61194:intron | 30.0% | |
| ! | ATTGTCCATCTTTTCTTATC+TGG | - | chr5.3:37095640-37095659 | None:intergenic | 30.0% |
| ! | CAAGTATTTTCCAACCATTT+AGG | + | chr5.3:37094953-37094972 | MS.gene61194:CDS | 30.0% |
| ! | TGGAAGAGAAGAAGAAATTT+TGG | + | chr5.3:37094803-37094822 | MS.gene61194:CDS | 30.0% |
| ! | TTCAGTCCAATAACATTTTC+TGG | - | chr5.3:37095557-37095576 | None:intergenic | 30.0% |
| !! | ATGTTGATGACAAATGCATT+AGG | - | chr5.3:37095683-37095702 | None:intergenic | 30.0% |
| !! | TGTTGATGACAAATGCATTA+GGG | - | chr5.3:37095682-37095701 | None:intergenic | 30.0% |
| !!! | CAATCATTTTGTTCTAAAGG+TGG | - | chr5.3:37095320-37095339 | None:intergenic | 30.0% |
| AATTTACCAAGGTCGATAAC+TGG | - | chr5.3:37093949-37093968 | None:intergenic | 35.0% | |
| AATTTCTTCTTCTCTTCCAC+TGG | - | chr5.3:37094802-37094821 | None:intergenic | 35.0% | |
| AGACCTTGCTTGTAAAGAAT+GGG | + | chr5.3:37094002-37094021 | MS.gene61194:CDS | 35.0% | |
| AGGAAACAAACCTAAATGGT+TGG | - | chr5.3:37094966-37094985 | None:intergenic | 35.0% | |
| ATCGACCTTGGTAAATTGTT+AGG | + | chr5.3:37093952-37093971 | MS.gene61194:CDS | 35.0% | |
| ATGTGTTCAATACAATGTGG+TGG | + | chr5.3:37095071-37095090 | MS.gene61194:intron | 35.0% | |
| CATCAACATTGGAGATATGT+TGG | + | chr5.3:37095694-37095713 | MS.gene61194:CDS | 35.0% | |
| CCTCAACCAGAAAATGTTAT+TGG | + | chr5.3:37095548-37095567 | MS.gene61194:CDS | 35.0% | |
| CTTCACCTAACAATTTACCA+AGG | - | chr5.3:37093960-37093979 | None:intergenic | 35.0% | |
| GAGTAGGAAACAAACCTAAA+TGG | - | chr5.3:37094970-37094989 | None:intergenic | 35.0% | |
| GTATAAACTCGCATGTTGAA+CGG | + | chr5.3:37094289-37094308 | MS.gene61194:intron | 35.0% | |
| TAGACCTTGCTTGTAAAGAA+TGG | + | chr5.3:37094001-37094020 | MS.gene61194:CDS | 35.0% | |
| TCACAACTTATTGTCATTCG+TGG | - | chr5.3:37094330-37094349 | None:intergenic | 35.0% | |
| TGATATTTGTGTATGCTGAG+TGG | - | chr5.3:37094627-37094646 | None:intergenic | 35.0% | |
| ! | CAACACTTCGTTGATTGAAA+AGG | + | chr5.3:37094744-37094763 | MS.gene61194:CDS | 35.0% |
| ! | TAATTGTGTTGACCAATGCA+GGG | - | chr5.3:37094373-37094392 | None:intergenic | 35.0% |
| ! | TTAATTGTGTTGACCAATGC+AGG | - | chr5.3:37094374-37094393 | None:intergenic | 35.0% |
| !!! | CCAATAACATTTTCTGGTTG+AGG | - | chr5.3:37095551-37095570 | None:intergenic | 35.0% |
| !!! | TAAAGAATGGGGTTTTTTCC+AGG | + | chr5.3:37094014-37094033 | MS.gene61194:CDS | 35.0% |
| AACCCCATTCTTTACAAGCA+AGG | - | chr5.3:37094008-37094027 | None:intergenic | 40.0% | |
| ACATGAGTAGGGTCTTGATT+TGG | - | chr5.3:37093898-37093917 | None:intergenic | 40.0% | |
| ACATGCGAGTTTATACAGAG+CGG | - | chr5.3:37094285-37094304 | None:intergenic | 40.0% | |
| ACATTACTCAAGCAATGAGG+TGG | + | chr5.3:37095507-37095526 | MS.gene61194:CDS | 40.0% | |
| ACCACATTACTCAAGCAATG+AGG | + | chr5.3:37095504-37095523 | MS.gene61194:CDS | 40.0% | |
| ACCTCATTGCTTGAGTAATG+TGG | - | chr5.3:37095508-37095527 | None:intergenic | 40.0% | |
| AGAATTCTTAAGCCTACCAG+TGG | + | chr5.3:37094783-37094802 | MS.gene61194:CDS | 40.0% | |
| ATGACAAATGCATTAGGGAG+GGG | - | chr5.3:37095677-37095696 | None:intergenic | 40.0% | |
| CAAACTCCAAATGACATGGA+AGG | + | chr5.3:37094826-37094845 | MS.gene61194:CDS | 40.0% | |
| CAACATTGGAGATATGTTGG+AGG | + | chr5.3:37095697-37095716 | MS.gene61194:CDS | 40.0% | |
| CCAAATCCTTCCATGTCATT+TGG | - | chr5.3:37094835-37094854 | None:intergenic | 40.0% | |
| CCAAATGACATGGAAGGATT+TGG | + | chr5.3:37094832-37094851 | MS.gene61194:CDS | 40.0% | |
| CCACACTTCCATTAGATGAA+AGG | + | chr5.3:37094914-37094933 | MS.gene61194:CDS | 40.0% | |
| CCTTTCATCTAATGGAAGTG+TGG | - | chr5.3:37094917-37094936 | None:intergenic | 40.0% | |
| CGAGGATTCCTTTCATCTAA+TGG | - | chr5.3:37094925-37094944 | None:intergenic | 40.0% | |
| CTGAATCCTCATTCTGATGT+TGG | + | chr5.3:37095572-37095591 | MS.gene61194:CDS | 40.0% | |
| CTTTGCCCATGAATTAGCAA+AGG | - | chr5.3:37095135-37095154 | None:intergenic | 40.0% | |
| CTTTGCTAATTCATGGGCAA+AGG | + | chr5.3:37095133-37095152 | MS.gene61194:intron | 40.0% | |
| GACCTTGCTTGTAAAGAATG+GGG | + | chr5.3:37094003-37094022 | MS.gene61194:CDS | 40.0% | |
| GATGACAAATGCATTAGGGA+GGG | - | chr5.3:37095678-37095697 | None:intergenic | 40.0% | |
| TGATGACAAATGCATTAGGG+AGG | - | chr5.3:37095679-37095698 | None:intergenic | 40.0% | |
| TGTTCAATACAATGTGGTGG+AGG | + | chr5.3:37095074-37095093 | MS.gene61194:intron | 40.0% | |
| TTGGCAAACTCCAAATGACA+TGG | + | chr5.3:37094822-37094841 | MS.gene61194:CDS | 40.0% | |
| TTGTGTTGAGCACATGAGTA+GGG | - | chr5.3:37093909-37093928 | None:intergenic | 40.0% | |
| TTTGGACGAAGAAATTGCTC+TGG | - | chr5.3:37093880-37093899 | None:intergenic | 40.0% | |
| TTTGTGTTGAGCACATGAGT+AGG | - | chr5.3:37093910-37093929 | None:intergenic | 40.0% | |
| ! | CTAATGGAAGTGTGGTAATG+AGG | - | chr5.3:37094909-37094928 | None:intergenic | 40.0% |
| ! | GTCCATCTTTTCTTATCTGG+AGG | - | chr5.3:37095637-37095656 | None:intergenic | 40.0% |
| ! | TCTTGAGAGCCTTTTCCATT+TGG | - | chr5.3:37095454-37095473 | None:intergenic | 40.0% |
| !! | TTATACAGAGCGGGTTAAAC+TGG | - | chr5.3:37094275-37094294 | None:intergenic | 40.0% |
| !! | TTGCTCTGGAACTTCAATGA+TGG | - | chr5.3:37093866-37093885 | None:intergenic | 40.0% |
| !!! | ACATTTTCTGGTTGAGGACA+TGG | - | chr5.3:37095545-37095564 | None:intergenic | 40.0% |
| AGGTCGATAACTGGTACTTG+TGG | - | chr5.3:37093940-37093959 | None:intergenic | 45.0% | |
| CAAGTACCAGTTATCGACCT+TGG | + | chr5.3:37093940-37093959 | MS.gene61194:CDS | 45.0% | |
| CATGCGAGTTTATACAGAGC+GGG | - | chr5.3:37094284-37094303 | None:intergenic | 45.0% | |
| CTCCAAGCCAATGAGATAGA+AGG | + | chr5.3:37095611-37095630 | MS.gene61194:CDS | 45.0% | |
| CTGGAAACAAAGTCGTAACG+TGG | - | chr5.3:37095162-37095181 | None:intergenic | 45.0% | |
| CTGGAAACTAACTCCTAACG+TGG | + | chr5.3:37095106-37095125 | MS.gene61194:intron | 45.0% | |
| GGCCTCCAGATAAGAAAAGA+TGG | + | chr5.3:37095632-37095651 | MS.gene61194:CDS | 45.0% | |
| TCTTCTTCTCTTCCACTGGT+AGG | - | chr5.3:37094798-37094817 | None:intergenic | 45.0% | |
| TGCCCATGAATTAGCAAAGG+CGG | - | chr5.3:37095132-37095151 | None:intergenic | 45.0% | |
| TGCTAATTCATGGGCAAAGG+CGG | + | chr5.3:37095136-37095155 | MS.gene61194:intron | 45.0% | |
| ! | AAGGCACCAACATCAGAATG+AGG | - | chr5.3:37095581-37095600 | None:intergenic | 45.0% |
| !! | CTATCTCATTGGCTTGGAGA+AGG | - | chr5.3:37095610-37095629 | None:intergenic | 45.0% |
| !! | GAGTGGACTAACCTGTTGAA+TGG | - | chr5.3:37094610-37094629 | None:intergenic | 45.0% |
| !! | TTTCTGGTTGAGGACATGGA+GGG | - | chr5.3:37095541-37095560 | None:intergenic | 45.0% |
| !!! | TTTTCTGGTTGAGGACATGG+AGG | - | chr5.3:37095542-37095561 | None:intergenic | 45.0% |
| CTGGAGGCCTTCTATCTCAT+TGG | - | chr5.3:37095621-37095640 | None:intergenic | 50.0% | |
| GGCCGCCTTTGCTAATTCAT+GGG | + | chr5.3:37095127-37095146 | MS.gene61194:intron | 50.0% | |
| GGCTTGGAGAAGGATGGTTA+AGG | - | chr5.3:37095600-37095619 | None:intergenic | 50.0% | |
| TGGCCGCCTTTGCTAATTCA+TGG | + | chr5.3:37095126-37095145 | MS.gene61194:intron | 50.0% | |
| TTTGCAAGCTCGTGCACAGA+AGG | - | chr5.3:37093838-37093857 | None:intergenic | 50.0% | |
| ! | GGCCTTCTATCTCATTGGCT+TGG | - | chr5.3:37095616-37095635 | None:intergenic | 50.0% |
| !! | CACAGAAGGTACCAATCGAG+AGG | - | chr5.3:37093824-37093843 | None:intergenic | 50.0% |
| !! | CTCATTGGCTTGGAGAAGGA+TGG | - | chr5.3:37095606-37095625 | None:intergenic | 50.0% |
| GCATTAGGGAGGGGTTGAAC+AGG | - | chr5.3:37095668-37095687 | None:intergenic | 55.0% | |
| TTAGCAAAGGCGGCCACGTT+AGG | - | chr5.3:37095122-37095141 | None:intergenic | 55.0% | |
| ! | GTGGTGGAGGAAGCACAATC+TGG | + | chr5.3:37095087-37095106 | MS.gene61194:intron | 55.0% |
| GGTCTGAGTCTGCCCTGCAT+TGG | + | chr5.3:37094358-37094377 | MS.gene61194:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 37093813 | 37095718 | 37093813 | ID=MS.gene61194 |
| chr5.3 | mRNA | 37093813 | 37095718 | 37093813 | ID=MS.gene61194.t1;Parent=MS.gene61194 |
| chr5.3 | exon | 37093813 | 37094035 | 37093813 | ID=MS.gene61194.t1.exon1;Parent=MS.gene61194.t1 |
| chr5.3 | CDS | 37093813 | 37094035 | 37093813 | ID=cds.MS.gene61194.t1;Parent=MS.gene61194.t1 |
| chr5.3 | exon | 37094727 | 37094974 | 37094727 | ID=MS.gene61194.t1.exon2;Parent=MS.gene61194.t1 |
| chr5.3 | CDS | 37094727 | 37094974 | 37094727 | ID=cds.MS.gene61194.t1;Parent=MS.gene61194.t1 |
| chr5.3 | exon | 37095394 | 37095718 | 37095394 | ID=MS.gene61194.t1.exon3;Parent=MS.gene61194.t1 |
| chr5.3 | CDS | 37095394 | 37095718 | 37095394 | ID=cds.MS.gene61194.t1;Parent=MS.gene61194.t1 |
| Gene Sequence |
| Protein sequence |
