Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73235.t1 | XP_013454932.1 | 98.2 | 225 | 4 | 0 | 1 | 225 | 1 | 225 | 3.10E-123 | 451.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73235.t1 | P32110 | 65.6 | 224 | 76 | 1 | 1 | 223 | 1 | 224 | 1.3e-85 | 317.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73235.t1 | B7FMM3 | 98.2 | 225 | 4 | 0 | 1 | 225 | 1 | 225 | 2.2e-123 | 451.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049153 | MS.gene73235 | 0.816367 | 5.74E-52 | -1.69E-46 |
| MS.gene049351 | MS.gene73235 | 0.806825 | 6.82E-50 | -1.69E-46 |
| MS.gene049356 | MS.gene73235 | 0.810057 | 1.39E-50 | -1.69E-46 |
| MS.gene049369 | MS.gene73235 | 0.805261 | 1.45E-49 | -1.69E-46 |
| MS.gene049491 | MS.gene73235 | 0.845088 | 5.05E-59 | -1.69E-46 |
| MS.gene049681 | MS.gene73235 | 0.801849 | 7.41E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene73235 | 0.820267 | 7.51E-53 | -1.69E-46 |
| MS.gene050301 | MS.gene73235 | 0.844924 | 5.59E-59 | -1.69E-46 |
| MS.gene050397 | MS.gene73235 | 0.827075 | 1.91E-54 | -1.69E-46 |
| MS.gene050399 | MS.gene73235 | 0.801556 | 8.52E-49 | -1.69E-46 |
| MS.gene050400 | MS.gene73235 | 0.825963 | 3.52E-54 | -1.69E-46 |
| MS.gene050464 | MS.gene73235 | 0.811752 | 5.98E-51 | -1.69E-46 |
| MS.gene050529 | MS.gene73235 | 0.820326 | 7.28E-53 | -1.69E-46 |
| MS.gene050670 | MS.gene73235 | 0.830774 | 2.43E-55 | -1.69E-46 |
| MS.gene050971 | MS.gene73235 | 0.823039 | 1.72E-53 | -1.69E-46 |
| MS.gene05101 | MS.gene73235 | 0.808847 | 2.53E-50 | -1.69E-46 |
| MS.gene05105 | MS.gene73235 | 0.838578 | 2.65E-57 | -1.69E-46 |
| MS.gene051255 | MS.gene73235 | 0.827791 | 1.29E-54 | -1.69E-46 |
| MS.gene051360 | MS.gene73235 | 0.817498 | 3.20E-52 | -1.69E-46 |
| MS.gene051525 | MS.gene73235 | 0.816822 | 4.54E-52 | -1.69E-46 |
| MS.gene051605 | MS.gene73235 | 0.822009 | 2.98E-53 | -1.69E-46 |
| MS.gene051860 | MS.gene73235 | 0.832839 | 7.52E-56 | -1.69E-46 |
| MS.gene052011 | MS.gene73235 | -0.81345 | 2.54E-51 | -1.69E-46 |
| MS.gene052077 | MS.gene73235 | 0.81389 | 2.04E-51 | -1.69E-46 |
| MS.gene052078 | MS.gene73235 | 0.825382 | 4.83E-54 | -1.69E-46 |
| MS.gene052178 | MS.gene73235 | 0.820435 | 6.87E-53 | -1.69E-46 |
| MS.gene052188 | MS.gene73235 | 0.873489 | 1.41E-67 | -1.69E-46 |
| MS.gene052253 | MS.gene73235 | 0.869141 | 3.87E-66 | -1.69E-46 |
| MS.gene052310 | MS.gene73235 | 0.862556 | 4.66E-64 | -1.69E-46 |
| MS.gene052322 | MS.gene73235 | 0.812513 | 4.08E-51 | -1.69E-46 |
| MS.gene052340 | MS.gene73235 | 0.879021 | 1.75E-69 | -1.69E-46 |
| MS.gene052414 | MS.gene73235 | 0.800341 | 1.51E-48 | -1.69E-46 |
| MS.gene052481 | MS.gene73235 | 0.826041 | 3.37E-54 | -1.69E-46 |
| MS.gene052484 | MS.gene73235 | 0.815416 | 9.35E-52 | -1.69E-46 |
| MS.gene052485 | MS.gene73235 | 0.856879 | 2.39E-62 | -1.69E-46 |
| MS.gene053169 | MS.gene73235 | 0.809354 | 1.97E-50 | -1.69E-46 |
| MS.gene05316 | MS.gene73235 | 0.828521 | 8.58E-55 | -1.69E-46 |
| MS.gene053209 | MS.gene73235 | 0.817328 | 3.49E-52 | -1.69E-46 |
| MS.gene053449 | MS.gene73235 | 0.81045 | 1.15E-50 | -1.69E-46 |
| MS.gene053557 | MS.gene73235 | 0.844389 | 7.79E-59 | -1.69E-46 |
| MS.gene053758 | MS.gene73235 | 0.854175 | 1.47E-61 | -1.69E-46 |
| MS.gene053813 | MS.gene73235 | 0.805983 | 1.03E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene73235 | 0.81776 | 2.79E-52 | -1.69E-46 |
| MS.gene053928 | MS.gene73235 | 0.816907 | 4.34E-52 | -1.69E-46 |
| MS.gene054010 | MS.gene73235 | 0.828172 | 1.04E-54 | -1.69E-46 |
| MS.gene054011 | MS.gene73235 | 0.833468 | 5.24E-56 | -1.69E-46 |
| MS.gene054012 | MS.gene73235 | 0.831386 | 1.72E-55 | -1.69E-46 |
| MS.gene054013 | MS.gene73235 | 0.829187 | 5.92E-55 | -1.69E-46 |
| MS.gene054183 | MS.gene73235 | 0.814081 | 1.85E-51 | -1.69E-46 |
| MS.gene054349 | MS.gene73235 | 0.850417 | 1.72E-60 | -1.69E-46 |
| MS.gene054556 | MS.gene73235 | 0.84021 | 9.97E-58 | -1.69E-46 |
| MS.gene055116 | MS.gene73235 | 0.851835 | 6.85E-61 | -1.69E-46 |
| MS.gene055277 | MS.gene73235 | 0.842813 | 2.06E-58 | -1.69E-46 |
| MS.gene055422 | MS.gene73235 | 0.822415 | 2.40E-53 | -1.69E-46 |
| MS.gene055428 | MS.gene73235 | 0.808696 | 2.73E-50 | -1.69E-46 |
| MS.gene05553 | MS.gene73235 | 0.834298 | 3.25E-56 | -1.69E-46 |
| MS.gene055604 | MS.gene73235 | 0.827865 | 1.24E-54 | -1.69E-46 |
| MS.gene055666 | MS.gene73235 | 0.829687 | 4.48E-55 | -1.69E-46 |
| MS.gene056191 | MS.gene73235 | 0.867417 | 1.39E-65 | -1.69E-46 |
| MS.gene056511 | MS.gene73235 | 0.812071 | 5.10E-51 | -1.69E-46 |
| MS.gene056609 | MS.gene73235 | 0.802128 | 6.50E-49 | -1.69E-46 |
| MS.gene056659 | MS.gene73235 | 0.827535 | 1.48E-54 | -1.69E-46 |
| MS.gene056796 | MS.gene73235 | 0.824095 | 9.72E-54 | -1.69E-46 |
| MS.gene05702 | MS.gene73235 | 0.844075 | 9.46E-59 | -1.69E-46 |
| MS.gene057124 | MS.gene73235 | 0.814952 | 1.19E-51 | -1.69E-46 |
| MS.gene05733 | MS.gene73235 | 0.821229 | 4.51E-53 | -1.69E-46 |
| MS.gene057448 | MS.gene73235 | 0.815253 | 1.02E-51 | -1.69E-46 |
| MS.gene057449 | MS.gene73235 | 0.804805 | 1.81E-49 | -1.69E-46 |
| MS.gene057450 | MS.gene73235 | 0.814372 | 1.59E-51 | -1.69E-46 |
| MS.gene057749 | MS.gene73235 | 0.85718 | 1.95E-62 | -1.69E-46 |
| MS.gene057796 | MS.gene73235 | 0.825343 | 4.94E-54 | -1.69E-46 |
| MS.gene057823 | MS.gene73235 | 0.864394 | 1.26E-64 | -1.69E-46 |
| MS.gene057825 | MS.gene73235 | 0.823044 | 1.71E-53 | -1.69E-46 |
| MS.gene058002 | MS.gene73235 | 0.856694 | 2.71E-62 | -1.69E-46 |
| MS.gene058007 | MS.gene73235 | 0.813068 | 3.09E-51 | -1.69E-46 |
| MS.gene05811 | MS.gene73235 | 0.855723 | 5.21E-62 | -1.69E-46 |
| MS.gene058142 | MS.gene73235 | 0.821549 | 3.81E-53 | -1.69E-46 |
| MS.gene058365 | MS.gene73235 | 0.800153 | 1.65E-48 | -1.69E-46 |
| MS.gene05842 | MS.gene73235 | 0.812488 | 4.13E-51 | -1.69E-46 |
| MS.gene058444 | MS.gene73235 | 0.808336 | 3.26E-50 | -1.69E-46 |
| MS.gene058660 | MS.gene73235 | 0.832571 | 8.76E-56 | -1.69E-46 |
| MS.gene058700 | MS.gene73235 | 0.804445 | 2.15E-49 | -1.69E-46 |
| MS.gene05886 | MS.gene73235 | 0.825492 | 4.55E-54 | -1.69E-46 |
| MS.gene058928 | MS.gene73235 | 0.867274 | 1.54E-65 | -1.69E-46 |
| MS.gene058995 | MS.gene73235 | 0.821388 | 4.15E-53 | -1.69E-46 |
| MS.gene05907 | MS.gene73235 | 0.86795 | 9.38E-66 | -1.69E-46 |
| MS.gene059141 | MS.gene73235 | 0.824852 | 6.45E-54 | -1.69E-46 |
| MS.gene059285 | MS.gene73235 | 0.820552 | 6.46E-53 | -1.69E-46 |
| MS.gene059294 | MS.gene73235 | 0.85441 | 1.25E-61 | -1.69E-46 |
| MS.gene059366 | MS.gene73235 | 0.826044 | 3.37E-54 | -1.69E-46 |
| MS.gene059420 | MS.gene73235 | 0.846491 | 2.10E-59 | -1.69E-46 |
| MS.gene059518 | MS.gene73235 | 0.804579 | 2.02E-49 | -1.69E-46 |
| MS.gene059597 | MS.gene73235 | 0.850183 | 2.00E-60 | -1.69E-46 |
| MS.gene059676 | MS.gene73235 | 0.840555 | 8.10E-58 | -1.69E-46 |
| MS.gene059688 | MS.gene73235 | 0.859093 | 5.25E-63 | -1.69E-46 |
| MS.gene059692 | MS.gene73235 | 0.85992 | 2.96E-63 | -1.69E-46 |
| MS.gene059695 | MS.gene73235 | 0.861855 | 7.65E-64 | -1.69E-46 |
| MS.gene059711 | MS.gene73235 | 0.806174 | 9.35E-50 | -1.69E-46 |
| MS.gene059807 | MS.gene73235 | 0.831021 | 2.11E-55 | -1.69E-46 |
| MS.gene05984 | MS.gene73235 | 0.866283 | 3.19E-65 | -1.69E-46 |
| MS.gene059894 | MS.gene73235 | 0.823733 | 1.18E-53 | -1.69E-46 |
| MS.gene059974 | MS.gene73235 | 0.837031 | 6.61E-57 | -1.69E-46 |
| MS.gene06037 | MS.gene73235 | 0.805651 | 1.20E-49 | -1.69E-46 |
| MS.gene060403 | MS.gene73235 | 0.807426 | 5.08E-50 | -1.69E-46 |
| MS.gene060407 | MS.gene73235 | 0.823295 | 1.50E-53 | -1.69E-46 |
| MS.gene060837 | MS.gene73235 | 0.818858 | 1.57E-52 | -1.69E-46 |
| MS.gene060986 | MS.gene73235 | 0.847852 | 8.89E-60 | -1.69E-46 |
| MS.gene061049 | MS.gene73235 | 0.855194 | 7.43E-62 | -1.69E-46 |
| MS.gene061154 | MS.gene73235 | 0.825912 | 3.62E-54 | -1.69E-46 |
| MS.gene061159 | MS.gene73235 | 0.823552 | 1.30E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73235.t1 | MTR_4g019790 | 98.222 | 225 | 4 | 0 | 1 | 225 | 1 | 225 | 1.18e-162 | 448 |
| MS.gene73235.t1 | MTR_7g065720 | 65.158 | 221 | 76 | 1 | 1 | 220 | 1 | 221 | 2.90e-105 | 303 |
| MS.gene73235.t1 | MTR_7g065660 | 61.778 | 225 | 86 | 0 | 1 | 225 | 1 | 225 | 2.08e-104 | 301 |
| MS.gene73235.t1 | MTR_7g065590 | 61.435 | 223 | 86 | 0 | 1 | 223 | 1 | 223 | 5.10e-104 | 300 |
| MS.gene73235.t1 | MTR_7g065740 | 62.389 | 226 | 84 | 1 | 1 | 225 | 1 | 226 | 1.01e-103 | 299 |
| MS.gene73235.t1 | MTR_7g065290 | 63.470 | 219 | 80 | 0 | 1 | 219 | 1 | 219 | 1.98e-103 | 298 |
| MS.gene73235.t1 | MTR_7g065600 | 61.883 | 223 | 85 | 0 | 1 | 223 | 1 | 223 | 4.31e-103 | 297 |
| MS.gene73235.t1 | MTR_7g065750 | 64.159 | 226 | 80 | 1 | 1 | 225 | 1 | 226 | 2.97e-102 | 295 |
| MS.gene73235.t1 | MTR_7g065270 | 61.290 | 217 | 84 | 0 | 1 | 217 | 1 | 217 | 8.74e-97 | 281 |
| MS.gene73235.t1 | MTR_7g065265 | 60.829 | 217 | 85 | 0 | 1 | 217 | 1 | 217 | 5.52e-95 | 277 |
| MS.gene73235.t1 | MTR_7g065640 | 58.222 | 225 | 76 | 2 | 1 | 225 | 1 | 207 | 4.29e-94 | 274 |
| MS.gene73235.t1 | MTR_7g065230 | 58.744 | 223 | 87 | 1 | 1 | 223 | 1 | 218 | 7.19e-94 | 274 |
| MS.gene73235.t1 | MTR_7g065630 | 60.000 | 225 | 86 | 1 | 1 | 225 | 19 | 239 | 1.51e-93 | 274 |
| MS.gene73235.t1 | MTR_4g019780 | 59.624 | 213 | 84 | 2 | 4 | 215 | 5 | 216 | 4.67e-93 | 272 |
| MS.gene73235.t1 | MTR_7g065260 | 60.268 | 224 | 88 | 1 | 1 | 223 | 8 | 231 | 7.37e-91 | 267 |
| MS.gene73235.t1 | MTR_7g065710 | 57.005 | 207 | 85 | 1 | 8 | 214 | 5 | 207 | 3.06e-81 | 242 |
| MS.gene73235.t1 | MTR_7g065700 | 60.748 | 214 | 80 | 1 | 1 | 214 | 1 | 210 | 2.96e-80 | 239 |
| MS.gene73235.t1 | MTR_7g065680 | 56.444 | 225 | 94 | 1 | 1 | 225 | 1 | 221 | 1.78e-79 | 238 |
| MS.gene73235.t1 | MTR_1g090150 | 46.606 | 221 | 113 | 3 | 7 | 224 | 3 | 221 | 8.02e-66 | 203 |
| MS.gene73235.t1 | MTR_8g087425 | 46.188 | 223 | 112 | 3 | 7 | 225 | 5 | 223 | 1.72e-65 | 202 |
| MS.gene73235.t1 | MTR_6g080440 | 45.714 | 210 | 112 | 2 | 5 | 213 | 1 | 209 | 4.85e-65 | 201 |
| MS.gene73235.t1 | MTR_3g099757 | 44.889 | 225 | 120 | 3 | 1 | 224 | 1 | 222 | 3.82e-63 | 196 |
| MS.gene73235.t1 | MTR_1g115195 | 46.977 | 215 | 109 | 3 | 6 | 216 | 2 | 215 | 5.60e-61 | 191 |
| MS.gene73235.t1 | MTR_8g087410 | 45.000 | 220 | 119 | 2 | 7 | 225 | 6 | 224 | 9.27e-61 | 190 |
| MS.gene73235.t1 | MTR_4g059730 | 44.811 | 212 | 113 | 2 | 7 | 215 | 4 | 214 | 7.02e-60 | 187 |
| MS.gene73235.t1 | MTR_5g040430 | 40.991 | 222 | 123 | 3 | 1 | 215 | 1 | 221 | 9.12e-58 | 182 |
| MS.gene73235.t1 | MTR_1g090060 | 41.778 | 225 | 124 | 3 | 6 | 224 | 2 | 225 | 3.51e-56 | 178 |
| MS.gene73235.t1 | MTR_1g090070 | 41.892 | 222 | 126 | 1 | 6 | 224 | 8 | 229 | 5.14e-56 | 178 |
| MS.gene73235.t1 | MTR_1g090090 | 42.857 | 210 | 116 | 2 | 6 | 212 | 2 | 210 | 3.14e-54 | 173 |
| MS.gene73235.t1 | MTR_1g090100 | 42.180 | 211 | 118 | 2 | 8 | 215 | 3 | 212 | 1.34e-52 | 169 |
| MS.gene73235.t1 | MTR_5g037380 | 41.441 | 222 | 122 | 2 | 7 | 220 | 5 | 226 | 6.54e-50 | 162 |
| MS.gene73235.t1 | MTR_2g070150 | 42.365 | 203 | 112 | 4 | 7 | 207 | 4 | 203 | 5.67e-48 | 157 |
| MS.gene73235.t1 | MTR_8g061950 | 40.359 | 223 | 123 | 4 | 1 | 215 | 1 | 221 | 8.01e-48 | 157 |
| MS.gene73235.t1 | MTR_2g070130 | 44.390 | 205 | 109 | 5 | 7 | 209 | 4 | 205 | 2.41e-47 | 155 |
| MS.gene73235.t1 | MTR_2g070140 | 42.268 | 194 | 107 | 4 | 21 | 212 | 2 | 192 | 7.11e-47 | 154 |
| MS.gene73235.t1 | MTR_3g467420 | 38.967 | 213 | 125 | 4 | 2 | 212 | 4 | 213 | 2.21e-43 | 145 |
| MS.gene73235.t1 | MTR_2g070200 | 40.796 | 201 | 115 | 3 | 7 | 205 | 4 | 202 | 2.66e-43 | 145 |
| MS.gene73235.t1 | MTR_2g070180 | 40.394 | 203 | 116 | 4 | 7 | 207 | 4 | 203 | 9.37e-43 | 144 |
| MS.gene73235.t1 | MTR_2g070210 | 41.429 | 210 | 116 | 5 | 7 | 212 | 4 | 210 | 3.47e-42 | 142 |
| MS.gene73235.t1 | MTR_8g056940 | 38.942 | 208 | 122 | 4 | 7 | 212 | 4 | 208 | 5.03e-41 | 139 |
| MS.gene73235.t1 | MTR_4g124130 | 43.979 | 191 | 99 | 6 | 5 | 191 | 2 | 188 | 1.17e-40 | 139 |
| MS.gene73235.t1 | MTR_2g070120 | 39.524 | 210 | 120 | 6 | 7 | 213 | 4 | 209 | 1.58e-40 | 138 |
| MS.gene73235.t1 | MTR_2g070060 | 38.863 | 211 | 124 | 4 | 7 | 215 | 4 | 211 | 2.06e-40 | 138 |
| MS.gene73235.t1 | MTR_3g467430 | 37.441 | 211 | 127 | 4 | 4 | 212 | 6 | 213 | 1.02e-39 | 136 |
| MS.gene73235.t1 | MTR_5g076900 | 40.097 | 207 | 119 | 4 | 8 | 212 | 7 | 210 | 1.90e-39 | 135 |
| MS.gene73235.t1 | MTR_2g070070 | 41.038 | 212 | 120 | 4 | 6 | 215 | 3 | 211 | 3.86e-39 | 134 |
| MS.gene73235.t1 | MTR_0186s0030 | 47.445 | 137 | 70 | 2 | 7 | 142 | 4 | 139 | 1.34e-35 | 123 |
| MS.gene73235.t1 | MTR_2g070110 | 38.710 | 217 | 127 | 5 | 6 | 220 | 3 | 215 | 2.87e-34 | 122 |
| MS.gene73235.t1 | MTR_2g072120 | 50.769 | 65 | 31 | 1 | 51 | 114 | 2 | 66 | 2.10e-17 | 74.3 |
| MS.gene73235.t1 | MTR_1g067180 | 27.354 | 223 | 136 | 7 | 6 | 217 | 26 | 233 | 6.01e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73235.t1 | AT3G09270 | 50.459 | 218 | 104 | 4 | 8 | 222 | 7 | 223 | 5.61e-78 | 234 |
| MS.gene73235.t1 | AT2G29420 | 47.032 | 219 | 114 | 2 | 7 | 224 | 9 | 226 | 3.04e-72 | 219 |
| MS.gene73235.t1 | AT2G29490 | 48.325 | 209 | 105 | 3 | 1 | 207 | 1 | 208 | 5.10e-62 | 193 |
| MS.gene73235.t1 | AT2G29480 | 49.289 | 211 | 100 | 4 | 1 | 207 | 1 | 208 | 2.05e-61 | 192 |
| MS.gene73235.t1 | AT2G29450 | 46.117 | 206 | 109 | 2 | 4 | 207 | 3 | 208 | 3.41e-58 | 184 |
| MS.gene73235.t1 | AT2G29460 | 43.612 | 227 | 121 | 4 | 1 | 223 | 1 | 224 | 8.78e-58 | 182 |
| MS.gene73235.t1 | AT2G29440 | 41.333 | 225 | 128 | 4 | 1 | 223 | 1 | 223 | 3.53e-54 | 173 |
| MS.gene73235.t1 | AT2G29470 | 43.333 | 210 | 115 | 4 | 1 | 207 | 1 | 209 | 7.67e-54 | 172 |
| MS.gene73235.t1 | AT1G59700 | 43.723 | 231 | 121 | 4 | 4 | 225 | 3 | 233 | 1.56e-52 | 169 |
| MS.gene73235.t1 | AT1G59670 | 44.292 | 219 | 114 | 3 | 4 | 214 | 3 | 221 | 1.86e-52 | 169 |
| MS.gene73235.t1 | AT1G10370 | 41.475 | 217 | 120 | 2 | 5 | 214 | 3 | 219 | 1.51e-50 | 164 |
| MS.gene73235.t1 | AT1G69920 | 40.183 | 219 | 123 | 4 | 8 | 218 | 35 | 253 | 3.49e-48 | 159 |
| MS.gene73235.t1 | AT1G27130 | 38.073 | 218 | 127 | 3 | 8 | 217 | 7 | 224 | 4.34e-48 | 158 |
| MS.gene73235.t1 | AT1G78380 | 43.062 | 209 | 114 | 4 | 6 | 212 | 3 | 208 | 1.60e-47 | 156 |
| MS.gene73235.t1 | AT1G74590 | 38.136 | 236 | 128 | 5 | 1 | 224 | 1 | 230 | 1.72e-47 | 156 |
| MS.gene73235.t1 | AT1G78340 | 41.827 | 208 | 116 | 4 | 7 | 212 | 4 | 208 | 2.15e-47 | 155 |
| MS.gene73235.t1 | AT1G78370 | 41.951 | 205 | 114 | 4 | 10 | 212 | 7 | 208 | 5.48e-47 | 155 |
| MS.gene73235.t1 | AT5G62480 | 37.557 | 221 | 127 | 3 | 5 | 215 | 6 | 225 | 6.09e-47 | 155 |
| MS.gene73235.t1 | AT1G69930 | 36.486 | 222 | 135 | 2 | 2 | 217 | 7 | 228 | 1.19e-46 | 154 |
| MS.gene73235.t1 | AT1G78320 | 42.029 | 207 | 113 | 5 | 7 | 210 | 4 | 206 | 2.81e-45 | 150 |
| MS.gene73235.t1 | AT1G10360 | 38.140 | 215 | 126 | 3 | 7 | 214 | 5 | 219 | 3.35e-44 | 148 |
| MS.gene73235.t1 | AT1G17170 | 41.038 | 212 | 119 | 5 | 7 | 216 | 4 | 211 | 6.57e-44 | 147 |
| MS.gene73235.t1 | AT1G17180 | 40.385 | 208 | 119 | 4 | 7 | 212 | 4 | 208 | 2.27e-43 | 145 |
| MS.gene73235.t1 | AT1G27140 | 38.073 | 218 | 126 | 3 | 8 | 216 | 7 | 224 | 8.12e-43 | 145 |
| MS.gene73235.t1 | AT1G53680 | 39.614 | 207 | 120 | 4 | 1 | 204 | 1 | 205 | 9.52e-43 | 144 |
| MS.gene73235.t1 | AT1G78360 | 38.571 | 210 | 123 | 5 | 6 | 212 | 3 | 209 | 1.61e-38 | 133 |
| MS.gene73235.t1 | AT3G43800 | 38.725 | 204 | 116 | 6 | 7 | 204 | 5 | 205 | 2.99e-38 | 132 |
| MS.gene73235.t1 | AT1G17190 | 39.252 | 214 | 123 | 5 | 1 | 212 | 1 | 209 | 9.01e-38 | 131 |
| MS.gene73235.t1 | AT1G78320 | 35.922 | 206 | 100 | 5 | 7 | 210 | 4 | 179 | 4.63e-30 | 110 |
| MS.gene73235.t1 | AT5G62480 | 30.909 | 220 | 117 | 4 | 5 | 215 | 6 | 199 | 1.92e-29 | 109 |
| MS.gene73235.t1 | AT5G62480 | 30.909 | 220 | 116 | 4 | 5 | 215 | 6 | 198 | 3.55e-29 | 108 |
Find 47 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTTCCTACTTAGCTTTC+TGG | 0.061163 | 4.1:-78427682 | MS.gene73235:CDS |
| CTTACATTGAAGAAAATTTA+AGG | 0.142000 | 4.1:-78428466 | MS.gene73235:CDS |
| GTTCATTCTCAAGAAATTCT+AGG | 0.255826 | 4.1:+78427753 | None:intergenic |
| TTGAACTTCTCCTTGATCTT+TGG | 0.266733 | 4.1:+78428562 | None:intergenic |
| GAACTCAAGCACAAATTCTT+TGG | 0.284917 | 4.1:-78427734 | MS.gene73235:CDS |
| AGAAAGCATTGGCTCGATTT+TGG | 0.288252 | 4.1:-78428289 | MS.gene73235:CDS |
| TAAGGTTGTTGAGGGAAAAT+AGG | 0.325386 | 4.1:+78428314 | None:intergenic |
| CGAGCCAATGCTTTCTCATA+AGG | 0.337352 | 4.1:+78428296 | None:intergenic |
| AAGCCGAGGAGTCCATCTTT+TGG | 0.356975 | 4.1:+78427542 | None:intergenic |
| AATTTCCTAAGCTCTATAAA+TGG | 0.358102 | 4.1:-78427610 | MS.gene73235:CDS |
| CAAGGAGAAGTTCAATTGTT+AGG | 0.359110 | 4.1:-78428554 | MS.gene73235:CDS |
| ATTTGTACCCTTCGAACAAA+TGG | 0.373456 | 4.1:+78428518 | None:intergenic |
| GGGAGATTCTCTTTCACAAT+AGG | 0.380629 | 4.1:+78427566 | None:intergenic |
| CATGCAGCCTTTGATATTGC+TGG | 0.393495 | 4.1:+78427827 | None:intergenic |
| ACAGGCACCTTCTTGTGAAT+AGG | 0.403827 | 4.1:+78428413 | None:intergenic |
| ATGTTTCATCAATGTATTCA+AGG | 0.424371 | 4.1:+78428348 | None:intergenic |
| CTTTCTCATAAGGTTGTTGA+GGG | 0.431782 | 4.1:+78428306 | None:intergenic |
| ACAAATTGCTCTAAAACTAA+AGG | 0.443239 | 4.1:-78428501 | MS.gene73235:CDS |
| CAAATTGCTCTAAAACTAAA+GGG | 0.447417 | 4.1:-78428500 | MS.gene73235:CDS |
| GAAGTTCAATTGTTAGGTGT+AGG | 0.453999 | 4.1:-78428548 | MS.gene73235:CDS |
| TGACTCCATTTATAGAGCTT+AGG | 0.457524 | 4.1:+78427605 | None:intergenic |
| TTCATTCTCAAGAAATTCTA+GGG | 0.459545 | 4.1:+78427754 | None:intergenic |
| GTTCAATTGTTAGGTGTAGG+AGG | 0.480588 | 4.1:-78428545 | MS.gene73235:CDS |
| TTTGTACCCTTCGAACAAAT+GGG | 0.485284 | 4.1:+78428519 | None:intergenic |
| TTTGAAATGGCCAAAGATCA+AGG | 0.500048 | 4.1:-78428572 | None:intergenic |
| AGGAAGCCAGAAAGCTAAGT+AGG | 0.500826 | 4.1:+78427676 | None:intergenic |
| GCTTTCTCATAAGGTTGTTG+AGG | 0.515107 | 4.1:+78428305 | None:intergenic |
| GATCACAAGGGACTCAGCTA+AGG | 0.517350 | 4.1:+78428370 | None:intergenic |
| AACAAAGAAGAACGTGAGAA+AGG | 0.523741 | 4.1:-78427797 | MS.gene73235:CDS |
| CTCAAGCACAAATTCTTTGG+TGG | 0.534226 | 4.1:-78427731 | MS.gene73235:CDS |
| CTGTGATTGAAGAAGCTGTA+GGG | 0.541030 | 4.1:-78427655 | MS.gene73235:CDS |
| CAGCCTTTGATATTGCTGGC+AGG | 0.552662 | 4.1:+78427831 | None:intergenic |
| GAGGAAGCCCATTTGTTCGA+AGG | 0.559814 | 4.1:-78428526 | MS.gene73235:CDS |
| CAATGTATTCAAGGATCACA+AGG | 0.561254 | 4.1:+78428357 | None:intergenic |
| GTCGAGGTTCATTGATGACA+AGG | 0.566263 | 4.1:-78428267 | MS.gene73235:intron |
| TTGAATACATTGATGAAACA+TGG | 0.571451 | 4.1:-78428346 | MS.gene73235:CDS |
| AGGAAGCCCATTTGTTCGAA+GGG | 0.574450 | 4.1:-78428525 | MS.gene73235:CDS |
| GTATAATCCTATTCACAAGA+AGG | 0.593133 | 4.1:-78428420 | MS.gene73235:CDS |
| CCTGTGATTGAAGAAGCTGT+AGG | 0.598472 | 4.1:-78427656 | MS.gene73235:CDS |
| ATCACAAGGGACTCAGCTAA+GGG | 0.601842 | 4.1:+78428371 | None:intergenic |
| CAGCAATATCAAAGGCTGCA+TGG | 0.606136 | 4.1:-78427826 | MS.gene73235:CDS |
| ACAACCTTATGAGAAAGCAT+TGG | 0.609606 | 4.1:-78428300 | MS.gene73235:CDS |
| CCTACAGCTTCTTCAATCAC+AGG | 0.610321 | 4.1:+78427656 | None:intergenic |
| TGAATACATTGATGAAACAT+GGG | 0.611722 | 4.1:-78428345 | MS.gene73235:CDS |
| TGGAGAAAACATTAGCATTG+TGG | 0.621375 | 4.1:-78427711 | MS.gene73235:CDS |
| GATCCTGCCAGCAATATCAA+AGG | 0.632199 | 4.1:-78427834 | MS.gene73235:CDS |
| AATGTATTCAAGGATCACAA+GGG | 0.737483 | 4.1:+78428358 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTCACATTATTTTTAAA+AGG | - | chr4.1:78427978-78427997 | MS.gene73235:intron | 10.0% |
| !!! | TAAAAATAATGTGAAATTTT+TGG | + | chr4.1:78427976-78427995 | None:intergenic | 10.0% |
| !!! | TGTTGTTTCATAATATTATT+AGG | + | chr4.1:78428187-78428206 | None:intergenic | 15.0% |
| !!! | TTTTTTGTTGAAAAGATATT+AGG | + | chr4.1:78428151-78428170 | None:intergenic | 15.0% |
| !! | AATGAAATATGTTATGATGA+TGG | + | chr4.1:78428115-78428134 | None:intergenic | 20.0% |
| !! | CTTACATTGAAGAAAATTTA+AGG | - | chr4.1:78427599-78427618 | MS.gene73235:CDS | 20.0% |
| ! | AATTTCCTAAGCTCTATAAA+TGG | - | chr4.1:78428455-78428474 | MS.gene73235:CDS | 25.0% |
| ! | ATGTTTCATCAATGTATTCA+AGG | + | chr4.1:78427720-78427739 | None:intergenic | 25.0% |
| ! | TACTAAATACATGATGTATC+CGG | - | chr4.1:78427858-78427877 | MS.gene73235:intron | 25.0% |
| ! | TGAATACATTGATGAAACAT+GGG | - | chr4.1:78427720-78427739 | MS.gene73235:CDS | 25.0% |
| ! | TGTAATTCATCAATCATCAT+AGG | + | chr4.1:78428091-78428110 | None:intergenic | 25.0% |
| ! | TTCATGATGTTTCATACATA+GGG | + | chr4.1:78428051-78428070 | None:intergenic | 25.0% |
| ! | TTCATTCTCAAGAAATTCTA+GGG | + | chr4.1:78428314-78428333 | None:intergenic | 25.0% |
| ! | TTGAATACATTGATGAAACA+TGG | - | chr4.1:78427719-78427738 | MS.gene73235:CDS | 25.0% |
| ! | TTTCATGATGTTTCATACAT+AGG | + | chr4.1:78428052-78428071 | None:intergenic | 25.0% |
| !!! | ACAAATTGCTCTAAAACTAA+AGG | - | chr4.1:78427564-78427583 | MS.gene73235:CDS | 25.0% |
| !!! | CAAATTGCTCTAAAACTAAA+GGG | - | chr4.1:78427565-78427584 | MS.gene73235:CDS | 25.0% |
| !!! | TAATGTGAAATTTTTGGCAT+TGG | + | chr4.1:78427970-78427989 | None:intergenic | 25.0% |
| AATGTATTCAAGGATCACAA+GGG | + | chr4.1:78427710-78427729 | None:intergenic | 30.0% | |
| CACTAATAACTAATGTACGA+AGG | + | chr4.1:78427945-78427964 | None:intergenic | 30.0% | |
| GTATAATCCTATTCACAAGA+AGG | - | chr4.1:78427645-78427664 | MS.gene73235:CDS | 30.0% | |
| GTTCATTCTCAAGAAATTCT+AGG | + | chr4.1:78428315-78428334 | None:intergenic | 30.0% | |
| TTTCCATTATGGACAAAAAC+AGG | + | chr4.1:78427673-78427692 | None:intergenic | 30.0% | |
| ! | TAAAGTGAAAATTTAGAGCG+AGG | + | chr4.1:78428004-78428023 | None:intergenic | 30.0% |
| !! | TCGCTCTAAATTTTCACTTT+AGG | - | chr4.1:78428003-78428022 | MS.gene73235:intron | 30.0% |
| AACAAAGAAGAACGTGAGAA+AGG | - | chr4.1:78428268-78428287 | MS.gene73235:CDS | 35.0% | |
| ACGATAAACCACTATGATTC+TGG | + | chr4.1:78427884-78427903 | None:intergenic | 35.0% | |
| ATTTGTACCCTTCGAACAAA+TGG | + | chr4.1:78427550-78427569 | None:intergenic | 35.0% | |
| CAAGGAGAAGTTCAATTGTT+AGG | - | chr4.1:78427511-78427530 | MS.gene73235:CDS | 35.0% | |
| CAATGTATTCAAGGATCACA+AGG | + | chr4.1:78427711-78427730 | None:intergenic | 35.0% | |
| CTTTCTCATAAGGTTGTTGA+GGG | + | chr4.1:78427762-78427781 | None:intergenic | 35.0% | |
| GAACTCAAGCACAAATTCTT+TGG | - | chr4.1:78428331-78428350 | MS.gene73235:CDS | 35.0% | |
| GAAGTTCAATTGTTAGGTGT+AGG | - | chr4.1:78427517-78427536 | MS.gene73235:CDS | 35.0% | |
| TAAGGTTGTTGAGGGAAAAT+AGG | + | chr4.1:78427754-78427773 | None:intergenic | 35.0% | |
| TGACTCCATTTATAGAGCTT+AGG | + | chr4.1:78428463-78428482 | None:intergenic | 35.0% | |
| TGGAGAAAACATTAGCATTG+TGG | - | chr4.1:78428354-78428373 | MS.gene73235:CDS | 35.0% | |
| TTGAACTTCTCCTTGATCTT+TGG | + | chr4.1:78427506-78427525 | None:intergenic | 35.0% | |
| TTTGTACCCTTCGAACAAAT+GGG | + | chr4.1:78427549-78427568 | None:intergenic | 35.0% | |
| ! | ACAACCTTATGAGAAAGCAT+TGG | - | chr4.1:78427765-78427784 | MS.gene73235:CDS | 35.0% |
| ATCGAGATTTGAAAAAGCCG+AGG | + | chr4.1:78428540-78428559 | None:intergenic | 40.0% | |
| CTCAAGCACAAATTCTTTGG+TGG | - | chr4.1:78428334-78428353 | MS.gene73235:CDS | 40.0% | |
| CTGTGATTGAAGAAGCTGTA+GGG | - | chr4.1:78428410-78428429 | MS.gene73235:CDS | 40.0% | |
| GCTTTCTCATAAGGTTGTTG+AGG | + | chr4.1:78427763-78427782 | None:intergenic | 40.0% | |
| GGGAGATTCTCTTTCACAAT+AGG | + | chr4.1:78428502-78428521 | None:intergenic | 40.0% | |
| GTTCAATTGTTAGGTGTAGG+AGG | - | chr4.1:78427520-78427539 | MS.gene73235:CDS | 40.0% | |
| TAAACCACTATGATTCTGGC+CGG | + | chr4.1:78427880-78427899 | None:intergenic | 40.0% | |
| TGATGTTTCATACATAGGGC+CGG | + | chr4.1:78428047-78428066 | None:intergenic | 40.0% | |
| ! | CAGCTAAGGGTTTTCCATTA+TGG | + | chr4.1:78427684-78427703 | None:intergenic | 40.0% |
| !!! | AGAAAGCATTGGCTCGATTT+TGG | - | chr4.1:78427776-78427795 | MS.gene73235:CDS | 40.0% |
| !!! | GTGCCTGTTTTTGTCCATAA+TGG | - | chr4.1:78427667-78427686 | MS.gene73235:CDS | 40.0% |
| ACAGGCACCTTCTTGTGAAT+AGG | + | chr4.1:78427655-78427674 | None:intergenic | 45.0% | |
| AGGAAGCCAGAAAGCTAAGT+AGG | + | chr4.1:78428392-78428411 | None:intergenic | 45.0% | |
| AGGAAGCCCATTTGTTCGAA+GGG | - | chr4.1:78427540-78427559 | MS.gene73235:CDS | 45.0% | |
| ATCACAAGGGACTCAGCTAA+GGG | + | chr4.1:78427697-78427716 | None:intergenic | 45.0% | |
| CAGCAATATCAAAGGCTGCA+TGG | - | chr4.1:78428239-78428258 | MS.gene73235:intron | 45.0% | |
| CATGCAGCCTTTGATATTGC+TGG | + | chr4.1:78428241-78428260 | None:intergenic | 45.0% | |
| CCTACAGCTTCTTCAATCAC+AGG | + | chr4.1:78428412-78428431 | None:intergenic | 45.0% | |
| CCTGTGATTGAAGAAGCTGT+AGG | - | chr4.1:78428409-78428428 | MS.gene73235:CDS | 45.0% | |
| CGAGCCAATGCTTTCTCATA+AGG | + | chr4.1:78427772-78427791 | None:intergenic | 45.0% | |
| GATCCTGCCAGCAATATCAA+AGG | - | chr4.1:78428231-78428250 | MS.gene73235:intron | 45.0% | |
| TTTAGGTCTCAGCCATACGT+TGG | - | chr4.1:78428020-78428039 | MS.gene73235:intron | 45.0% | |
| ! | CTGCTTCCTACTTAGCTTTC+TGG | - | chr4.1:78428383-78428402 | MS.gene73235:CDS | 45.0% |
| ! | GTCGAGGTTCATTGATGACA+AGG | - | chr4.1:78427798-78427817 | MS.gene73235:CDS | 45.0% |
| CAGCCTTTGATATTGCTGGC+AGG | + | chr4.1:78428237-78428256 | None:intergenic | 50.0% | |
| GAGAATCTCCCCCCAAAAGA+TGG | - | chr4.1:78428511-78428530 | MS.gene73235:CDS | 50.0% | |
| GAGGAAGCCCATTTGTTCGA+AGG | - | chr4.1:78427539-78427558 | MS.gene73235:CDS | 50.0% | |
| GATCACAAGGGACTCAGCTA+AGG | + | chr4.1:78427698-78427717 | None:intergenic | 50.0% | |
| GTATCCGGCCAGAATCATAG+TGG | - | chr4.1:78427873-78427892 | MS.gene73235:intron | 50.0% | |
| ! | AAGCCGAGGAGTCCATCTTT+TGG | + | chr4.1:78428526-78428545 | None:intergenic | 50.0% |
| ! | AGCCGAGGAGTCCATCTTTT+GGG | + | chr4.1:78428525-78428544 | None:intergenic | 50.0% |
| !!! | CATTGGCTCGATTTTGGTCG+AGG | - | chr4.1:78427782-78427801 | MS.gene73235:CDS | 50.0% |
| GTCTCAGCCATACGTTGGAC+CGG | - | chr4.1:78428025-78428044 | MS.gene73235:intron | 55.0% | |
| ! | CCCCCAAAAGATGGACTCCT+CGG | - | chr4.1:78428520-78428539 | MS.gene73235:CDS | 55.0% |
| ! | CCGAGGAGTCCATCTTTTGG+GGG | + | chr4.1:78428523-78428542 | None:intergenic | 55.0% |
| ! | CGAGGAGTCCATCTTTTGGG+GGG | + | chr4.1:78428522-78428541 | None:intergenic | 55.0% |
| ! | GCCGAGGAGTCCATCTTTTG+GGG | + | chr4.1:78428524-78428543 | None:intergenic | 55.0% |
| CATAGGGCCGGTCCAACGTA+TGG | + | chr4.1:78428035-78428054 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 78427499 | 78428588 | 78427499 | ID=MS.gene73235 |
| chr4.1 | mRNA | 78427499 | 78428588 | 78427499 | ID=MS.gene73235.t1;Parent=MS.gene73235 |
| chr4.1 | exon | 78428268 | 78428588 | 78428268 | ID=MS.gene73235.t1.exon1;Parent=MS.gene73235.t1 |
| chr4.1 | CDS | 78428268 | 78428588 | 78428268 | ID=cds.MS.gene73235.t1;Parent=MS.gene73235.t1 |
| chr4.1 | exon | 78427499 | 78427855 | 78427499 | ID=MS.gene73235.t1.exon2;Parent=MS.gene73235.t1 |
| chr4.1 | CDS | 78427499 | 78427855 | 78427499 | ID=cds.MS.gene73235.t1;Parent=MS.gene73235.t1 |
| Gene Sequence |
| Protein sequence |
