Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78356.t1 | XP_003597482.1 | 97.5 | 488 | 12 | 0 | 1 | 488 | 21 | 508 | 1.30E-288 | 1001.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78356.t1 | B8AVF0 | 68.2 | 475 | 151 | 0 | 11 | 485 | 34 | 508 | 2.1e-205 | 716.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78356.t1 | G7IHR1 | 97.5 | 488 | 12 | 0 | 1 | 488 | 21 | 508 | 9.7e-289 | 1001.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene78356 | -0.834167 | 3.50E-56 | -1.69E-46 |
| MS.gene049222 | MS.gene78356 | -0.811522 | 6.71E-51 | -1.69E-46 |
| MS.gene049232 | MS.gene78356 | -0.80834 | 3.25E-50 | -1.69E-46 |
| MS.gene049285 | MS.gene78356 | -0.813047 | 3.12E-51 | -1.69E-46 |
| MS.gene049320 | MS.gene78356 | -0.815924 | 7.21E-52 | -1.69E-46 |
| MS.gene04932 | MS.gene78356 | 0.805185 | 1.51E-49 | -1.69E-46 |
| MS.gene049633 | MS.gene78356 | -0.813395 | 2.62E-51 | -1.69E-46 |
| MS.gene05010 | MS.gene78356 | -0.808357 | 3.22E-50 | -1.69E-46 |
| MS.gene050170 | MS.gene78356 | -0.848027 | 7.96E-60 | -1.69E-46 |
| MS.gene050323 | MS.gene78356 | -0.843518 | 1.33E-58 | -1.69E-46 |
| MS.gene050381 | MS.gene78356 | 0.804835 | 1.79E-49 | -1.69E-46 |
| MS.gene050496 | MS.gene78356 | -0.821519 | 3.87E-53 | -1.69E-46 |
| MS.gene050504 | MS.gene78356 | -0.832674 | 8.26E-56 | -1.69E-46 |
| MS.gene050577 | MS.gene78356 | -0.832472 | 9.27E-56 | -1.69E-46 |
| MS.gene050612 | MS.gene78356 | -0.80782 | 4.19E-50 | -1.69E-46 |
| MS.gene050699 | MS.gene78356 | -0.806132 | 9.54E-50 | -1.69E-46 |
| MS.gene05080 | MS.gene78356 | -0.803497 | 3.39E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene78356 | -0.859024 | 5.50E-63 | -1.69E-46 |
| MS.gene050871 | MS.gene78356 | -0.860245 | 2.36E-63 | -1.69E-46 |
| MS.gene050883 | MS.gene78356 | 0.818172 | 2.25E-52 | -1.69E-46 |
| MS.gene05104 | MS.gene78356 | 0.831943 | 1.25E-55 | -1.69E-46 |
| MS.gene051167 | MS.gene78356 | 0.817177 | 3.78E-52 | -1.69E-46 |
| MS.gene051439 | MS.gene78356 | 0.823357 | 1.45E-53 | -1.69E-46 |
| MS.gene051838 | MS.gene78356 | -0.818682 | 1.73E-52 | -1.69E-46 |
| MS.gene051863 | MS.gene78356 | 0.815392 | 9.46E-52 | -1.69E-46 |
| MS.gene052164 | MS.gene78356 | -0.807292 | 5.43E-50 | -1.69E-46 |
| MS.gene052482 | MS.gene78356 | -0.824478 | 7.90E-54 | -1.69E-46 |
| MS.gene052486 | MS.gene78356 | -0.818943 | 1.51E-52 | -1.69E-46 |
| MS.gene052503 | MS.gene78356 | -0.848012 | 8.03E-60 | -1.69E-46 |
| MS.gene052506 | MS.gene78356 | -0.815081 | 1.11E-51 | -1.69E-46 |
| MS.gene052615 | MS.gene78356 | -0.805398 | 1.36E-49 | -1.69E-46 |
| MS.gene052822 | MS.gene78356 | -0.804648 | 1.95E-49 | -1.69E-46 |
| MS.gene052823 | MS.gene78356 | -0.852466 | 4.53E-61 | -1.69E-46 |
| MS.gene052825 | MS.gene78356 | -0.850908 | 1.25E-60 | -1.69E-46 |
| MS.gene053203 | MS.gene78356 | -0.849241 | 3.67E-60 | -1.69E-46 |
| MS.gene053420 | MS.gene78356 | 0.814384 | 1.58E-51 | -1.69E-46 |
| MS.gene053421 | MS.gene78356 | 0.824078 | 9.81E-54 | -1.69E-46 |
| MS.gene053479 | MS.gene78356 | -0.84708 | 1.45E-59 | -1.69E-46 |
| MS.gene053480 | MS.gene78356 | -0.842752 | 2.13E-58 | -1.69E-46 |
| MS.gene053574 | MS.gene78356 | -0.80283 | 4.66E-49 | -1.69E-46 |
| MS.gene053626 | MS.gene78356 | -0.810853 | 9.38E-51 | -1.69E-46 |
| MS.gene053824 | MS.gene78356 | -0.832242 | 1.06E-55 | -1.69E-46 |
| MS.gene054003 | MS.gene78356 | -0.840259 | 9.68E-58 | -1.69E-46 |
| MS.gene054270 | MS.gene78356 | 0.813374 | 2.64E-51 | -1.69E-46 |
| MS.gene054595 | MS.gene78356 | -0.836329 | 9.98E-57 | -1.69E-46 |
| MS.gene054706 | MS.gene78356 | 0.847741 | 9.54E-60 | -1.69E-46 |
| MS.gene05470 | MS.gene78356 | -0.841917 | 3.55E-58 | -1.69E-46 |
| MS.gene054742 | MS.gene78356 | 0.803345 | 3.64E-49 | -1.69E-46 |
| MS.gene054954 | MS.gene78356 | -0.819676 | 1.02E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene78356 | -0.802994 | 4.31E-49 | -1.69E-46 |
| MS.gene055502 | MS.gene78356 | -0.850079 | 2.14E-60 | -1.69E-46 |
| MS.gene055577 | MS.gene78356 | -0.828546 | 8.47E-55 | -1.69E-46 |
| MS.gene05589 | MS.gene78356 | -0.843648 | 1.23E-58 | -1.69E-46 |
| MS.gene056046 | MS.gene78356 | -0.808764 | 2.64E-50 | -1.69E-46 |
| MS.gene056198 | MS.gene78356 | 0.820809 | 5.64E-53 | -1.69E-46 |
| MS.gene056310 | MS.gene78356 | 0.802612 | 5.17E-49 | -1.69E-46 |
| MS.gene056313 | MS.gene78356 | 0.807548 | 4.79E-50 | -1.69E-46 |
| MS.gene056387 | MS.gene78356 | -0.837964 | 3.81E-57 | -1.69E-46 |
| MS.gene056504 | MS.gene78356 | -0.853472 | 2.34E-61 | -1.69E-46 |
| MS.gene056510 | MS.gene78356 | -0.811686 | 6.19E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene78356 | -0.804439 | 2.16E-49 | -1.69E-46 |
| MS.gene056688 | MS.gene78356 | 0.802338 | 5.88E-49 | -1.69E-46 |
| MS.gene056694 | MS.gene78356 | 0.802019 | 6.84E-49 | -1.69E-46 |
| MS.gene056697 | MS.gene78356 | 0.810371 | 1.19E-50 | -1.69E-46 |
| MS.gene057014 | MS.gene78356 | 0.801384 | 9.24E-49 | -1.69E-46 |
| MS.gene057086 | MS.gene78356 | -0.811307 | 7.47E-51 | -1.69E-46 |
| MS.gene057173 | MS.gene78356 | 0.805624 | 1.22E-49 | -1.69E-46 |
| MS.gene057261 | MS.gene78356 | 0.833094 | 6.50E-56 | -1.69E-46 |
| MS.gene05726 | MS.gene78356 | 0.804007 | 2.66E-49 | -1.69E-46 |
| MS.gene057856 | MS.gene78356 | -0.813662 | 2.29E-51 | -1.69E-46 |
| MS.gene057857 | MS.gene78356 | -0.802766 | 4.80E-49 | -1.69E-46 |
| MS.gene05787 | MS.gene78356 | -0.805306 | 1.42E-49 | -1.69E-46 |
| MS.gene058099 | MS.gene78356 | 0.828157 | 1.05E-54 | -1.69E-46 |
| MS.gene058157 | MS.gene78356 | -0.861327 | 1.11E-63 | -1.69E-46 |
| MS.gene058171 | MS.gene78356 | 0.826506 | 2.61E-54 | -1.69E-46 |
| MS.gene058173 | MS.gene78356 | 0.825986 | 3.48E-54 | -1.69E-46 |
| MS.gene058175 | MS.gene78356 | 0.831505 | 1.61E-55 | -1.69E-46 |
| MS.gene058334 | MS.gene78356 | 0.821269 | 4.42E-53 | -1.69E-46 |
| MS.gene058338 | MS.gene78356 | -0.812757 | 3.61E-51 | -1.69E-46 |
| MS.gene05837 | MS.gene78356 | -0.836362 | 9.78E-57 | -1.69E-46 |
| MS.gene058382 | MS.gene78356 | 0.829413 | 5.22E-55 | -1.69E-46 |
| MS.gene058418 | MS.gene78356 | 0.802466 | 5.54E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene78356 | -0.821422 | 4.07E-53 | -1.69E-46 |
| MS.gene058544 | MS.gene78356 | -0.823688 | 1.21E-53 | -1.69E-46 |
| MS.gene058838 | MS.gene78356 | -0.82282 | 1.93E-53 | -1.69E-46 |
| MS.gene059022 | MS.gene78356 | -0.806349 | 8.59E-50 | -1.69E-46 |
| MS.gene059023 | MS.gene78356 | -0.83816 | 3.39E-57 | -1.69E-46 |
| MS.gene059045 | MS.gene78356 | 0.806645 | 7.44E-50 | -1.69E-46 |
| MS.gene05914 | MS.gene78356 | -0.802857 | 4.60E-49 | -1.69E-46 |
| MS.gene059223 | MS.gene78356 | 0.864985 | 8.20E-65 | -1.69E-46 |
| MS.gene05926 | MS.gene78356 | 0.822426 | 2.38E-53 | -1.69E-46 |
| MS.gene059328 | MS.gene78356 | 0.801943 | 7.09E-49 | -1.69E-46 |
| MS.gene059667 | MS.gene78356 | -0.809137 | 2.20E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene78356 | -0.805349 | 1.39E-49 | -1.69E-46 |
| MS.gene059699 | MS.gene78356 | 0.819482 | 1.13E-52 | -1.69E-46 |
| MS.gene059703 | MS.gene78356 | 0.83865 | 2.54E-57 | -1.69E-46 |
| MS.gene059718 | MS.gene78356 | -0.811834 | 5.74E-51 | -1.69E-46 |
| MS.gene059756 | MS.gene78356 | -0.805978 | 1.03E-49 | -1.69E-46 |
| MS.gene059865 | MS.gene78356 | -0.828411 | 9.13E-55 | -1.69E-46 |
| MS.gene06000 | MS.gene78356 | -0.828253 | 9.96E-55 | -1.69E-46 |
| MS.gene060405 | MS.gene78356 | 0.810768 | 9.78E-51 | -1.69E-46 |
| MS.gene060593 | MS.gene78356 | 0.804737 | 1.87E-49 | -1.69E-46 |
| MS.gene060595 | MS.gene78356 | 0.812376 | 4.37E-51 | -1.69E-46 |
| MS.gene060762 | MS.gene78356 | -0.804326 | 2.28E-49 | -1.69E-46 |
| MS.gene060778 | MS.gene78356 | -0.831339 | 1.77E-55 | -1.69E-46 |
| MS.gene06077 | MS.gene78356 | -0.8427 | 2.20E-58 | -1.69E-46 |
| MS.gene060982 | MS.gene78356 | -0.824876 | 6.37E-54 | -1.69E-46 |
| MS.gene061044 | MS.gene78356 | 0.803635 | 3.17E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 105 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGAATTTGTTGTCGGAAAA+TGG | 0.166836 | 2.3:-4845117 | None:intergenic |
| TGTAATATTTGATTCCTTCT+TGG | 0.196303 | 2.3:-4844281 | None:intergenic |
| TTGATTTACATCACCGAAAA+TGG | 0.213109 | 2.3:+4848251 | MS.gene78356:CDS |
| AATTGCACCGATGGTGATTC+AGG | 0.238873 | 2.3:+4844888 | MS.gene78356:CDS |
| GCATAACCTTGGTGTCTAAT+TGG | 0.248269 | 2.3:+4845088 | MS.gene78356:CDS |
| GCTTGCTTTATAGAGAAATT+TGG | 0.249611 | 2.3:-4847800 | None:intergenic |
| TGTTGTACACTTTCTTGATA+TGG | 0.254242 | 2.3:-4848223 | None:intergenic |
| GAACTTTGTTTCAAGGAGTT+TGG | 0.271449 | 2.3:+4844756 | MS.gene78356:CDS |
| CACCTGGTCGATGTTCTAAA+TGG | 0.277483 | 2.3:+4844856 | MS.gene78356:CDS |
| AAGCAAGCAAGACTACTTAA+AGG | 0.279217 | 2.3:+4847815 | MS.gene78356:CDS |
| GTGGGAGAGGAGCAAGTATA+TGG | 0.294748 | 2.3:+4841473 | MS.gene78356:CDS |
| ATCACTAGAGGAAGCTCTTA+TGG | 0.306430 | 2.3:+4848483 | MS.gene78356:CDS |
| GGATCTTCCTCAAGCTTTAG+AGG | 0.307018 | 2.3:+4844471 | MS.gene78356:CDS |
| CGATCAATATTACCGCTATA+AGG | 0.310978 | 2.3:+4843133 | MS.gene78356:CDS |
| GAATCTCAAAAGGGTGTAAT+AGG | 0.312682 | 2.3:+4845066 | MS.gene78356:CDS |
| CATTTGTAACTCTATTTCAT+TGG | 0.317206 | 2.3:+4844449 | MS.gene78356:CDS |
| AGGAACGGCGTAAATATAAA+AGG | 0.334372 | 2.3:+4848685 | MS.gene78356:intron |
| ATCAATGAATTGTTGACTAA+TGG | 0.339535 | 2.3:+4844312 | MS.gene78356:CDS |
| TATTTGTAATTACAGGTTCA+TGG | 0.339904 | 2.3:+4847718 | MS.gene78356:intron |
| ATACGTACCCTCGGACCTAT+TGG | 0.347318 | 2.3:-4848075 | None:intergenic |
| AAAAGCATGCGTTCCCTTGT+TGG | 0.352684 | 2.3:+4847767 | MS.gene78356:CDS |
| TTAACTCACTTGGGAGGATT+CGG | 0.362117 | 2.3:-4844114 | None:intergenic |
| GCTTCCTCTAGTGATAATAT+TGG | 0.368153 | 2.3:-4848475 | None:intergenic |
| GGCATGCTTACTTGTAAGAT+TGG | 0.379769 | 2.3:-4847939 | None:intergenic |
| ATCAATAGAAGGAAAGCTTA+AGG | 0.383879 | 2.3:+4844248 | MS.gene78356:intron |
| CCACCAATGCTATAAGAGTA+TGG | 0.394674 | 2.3:-4844813 | None:intergenic |
| TAACTCACTTGGGAGGATTC+GGG | 0.394902 | 2.3:-4844113 | None:intergenic |
| AGCATTGGTGGCTATGCAAT+AGG | 0.399541 | 2.3:+4844825 | MS.gene78356:CDS |
| GTTTCAAGGAGTTTGGAGAT+AGG | 0.403483 | 2.3:+4844763 | MS.gene78356:CDS |
| GACAGCATCATCATCATATC+AGG | 0.404890 | 2.3:+4841104 | MS.gene78356:CDS |
| GGATATTTCCCCGTTGTTAG+TGG | 0.406418 | 2.3:-4847743 | None:intergenic |
| CGGGCCGTGGACTTCATGTT+TGG | 0.409604 | 2.3:+4845156 | MS.gene78356:CDS |
| TTGGTTGTATGTTTATCCTA+AGG | 0.412633 | 2.3:+4848181 | MS.gene78356:CDS |
| AGTGAAGAAACATCAAGAAT+TGG | 0.415745 | 2.3:-4841045 | None:intergenic |
| ATTTGTAACTCTATTTCATT+GGG | 0.421248 | 2.3:+4844450 | MS.gene78356:CDS |
| CTATGCGGAACTTTGTTTCA+AGG | 0.424887 | 2.3:+4844749 | MS.gene78356:CDS |
| TTGGAGATAGGGTGAAGTAT+TGG | 0.427325 | 2.3:+4844775 | MS.gene78356:CDS |
| AAAGGGTCATTTGATTTCCT+TGG | 0.428442 | 2.3:+4847833 | MS.gene78356:CDS |
| TTCATGGAACCACTAACAAC+GGG | 0.430404 | 2.3:+4847734 | MS.gene78356:CDS |
| AAATGCTGCTGAGCGGGCCG+TGG | 0.439163 | 2.3:+4845143 | MS.gene78356:CDS |
| CTTACAGATTCTCAATCTCT+TGG | 0.441705 | 2.3:+4844089 | MS.gene78356:CDS |
| TTTCAAGGAGTTTGGAGATA+GGG | 0.449196 | 2.3:+4844764 | MS.gene78356:CDS |
| TCGGGTTATACAGTGCGCTT+TGG | 0.456104 | 2.3:+4848748 | MS.gene78356:CDS |
| TCAATAGAAGGAAAGCTTAA+GGG | 0.459464 | 2.3:+4844249 | MS.gene78356:intron |
| GAGCGTAATGGTATTCCAAT+AGG | 0.459542 | 2.3:+4848060 | MS.gene78356:CDS |
| TTATATGCAGGAATCTCAAA+AGG | 0.462201 | 2.3:+4845056 | MS.gene78356:intron |
| AGCAAGCAAGACTACTTAAA+GGG | 0.462593 | 2.3:+4847816 | MS.gene78356:CDS |
| CAAGCTTTAGAGGATGAGTA+TGG | 0.465296 | 2.3:+4844481 | MS.gene78356:CDS |
| GCATTGGTGGCTATGCAATA+GGG | 0.471733 | 2.3:+4844826 | MS.gene78356:CDS |
| AAGATAGAAGATAGAAGCAA+TGG | 0.474758 | 2.3:+4843098 | MS.gene78356:CDS |
| TGCATTAGTAGCATAGTTAG+AGG | 0.475593 | 2.3:-4847870 | None:intergenic |
| CGATCAAAATGCTGCTGAGC+GGG | 0.477051 | 2.3:+4845137 | MS.gene78356:CDS |
| CCATACTCTTATAGCATTGG+TGG | 0.492739 | 2.3:+4844813 | MS.gene78356:CDS |
| AACAATTCTTGAATTCCCTT+AGG | 0.492862 | 2.3:-4848197 | None:intergenic |
| CTGCGGCATGAGCAATAAGT+TGG | 0.495384 | 2.3:-4844938 | None:intergenic |
| TGTGTACAAGAAGAAGTATC+AGG | 0.501335 | 2.3:+4844968 | MS.gene78356:CDS |
| TGGTTGTATGTTTATCCTAA+GGG | 0.511175 | 2.3:+4848182 | MS.gene78356:CDS |
| GAGCCATACTCTTATAGCAT+TGG | 0.529970 | 2.3:+4844810 | MS.gene78356:CDS |
| CCGTGGACTTCATGTTTGGA+TGG | 0.534330 | 2.3:+4845160 | MS.gene78356:CDS |
| CAATGAAATAGAGTTACAAA+TGG | 0.537102 | 2.3:-4844448 | None:intergenic |
| CTCTTTCCCTGAATCACCAT+CGG | 0.545442 | 2.3:-4844895 | None:intergenic |
| TATGAAGGTGCTGCAAAAGA+AGG | 0.545776 | 2.3:+4841451 | MS.gene78356:CDS |
| GCTGCAAAAGAAGGTGGGAG+AGG | 0.546750 | 2.3:+4841460 | MS.gene78356:CDS |
| ATTGCACCGATGGTGATTCA+GGG | 0.548763 | 2.3:+4844889 | MS.gene78356:CDS |
| TTAAATTCAAATTGCACCGA+TGG | 0.552588 | 2.3:+4844879 | MS.gene78356:CDS |
| TGGTGATGCGAAACAATGTA+AGG | 0.553643 | 2.3:-4844918 | None:intergenic |
| TGGGAGAGGAGCAAGTATAT+GGG | 0.558573 | 2.3:+4841474 | MS.gene78356:CDS |
| GTACATATTATGCAGTATGA+AGG | 0.561102 | 2.3:+4841436 | MS.gene78356:intron |
| ATCAAAAGTTGTCTGCAAAG+TGG | 0.566266 | 2.3:+4848809 | MS.gene78356:CDS |
| AGGTATAATAGTTTAGTCCA+AGG | 0.571436 | 2.3:-4847850 | None:intergenic |
| TAGTCAACAATTCATTGATG+AGG | 0.572838 | 2.3:-4844308 | None:intergenic |
| GATACTTCTTCTTGTACACA+TGG | 0.579397 | 2.3:-4844965 | None:intergenic |
| AACCATTTAGAACATCGACC+AGG | 0.592457 | 2.3:-4844858 | None:intergenic |
| TACTCATCCTCTAAAGCTTG+AGG | 0.593314 | 2.3:-4844478 | None:intergenic |
| GAAGGTGCTGCAAAAGAAGG+TGG | 0.597351 | 2.3:+4841454 | MS.gene78356:CDS |
| AAGGGAGGTATAAACCAAGA+AGG | 0.606321 | 2.3:+4844267 | MS.gene78356:CDS |
| CTTGTACACATGGGCAGCTG+CGG | 0.609892 | 2.3:-4844955 | None:intergenic |
| AGGAAGATGTTGGCATCATG+AGG | 0.610478 | 2.3:+4844050 | MS.gene78356:intron |
| TATATGCAGGAATCTCAAAA+GGG | 0.614242 | 2.3:+4845057 | MS.gene78356:intron |
| GTATCACTTACATAACGAGA+GGG | 0.615594 | 2.3:-4844516 | None:intergenic |
| AGATGTTTAACTCACTTGGG+AGG | 0.617656 | 2.3:-4844120 | None:intergenic |
| TGGTATTCCAATAGGTCCGA+GGG | 0.619503 | 2.3:+4848068 | MS.gene78356:CDS |
| TGATCCAATATTATCACTAG+AGG | 0.619719 | 2.3:+4848471 | MS.gene78356:CDS |
| GTAATGTCGCAGGAAGATGT+TGG | 0.622042 | 2.3:+4844040 | MS.gene78356:intron |
| TGTATCACTTACATAACGAG+AGG | 0.633730 | 2.3:-4844517 | None:intergenic |
| GCAATAGGGATCTTCCCACC+TGG | 0.638446 | 2.3:+4844840 | MS.gene78356:CDS |
| CCATCCAAACATGAAGTCCA+CGG | 0.639817 | 2.3:-4845160 | None:intergenic |
| GGGTGTAATAGGCATAACCT+TGG | 0.639957 | 2.3:+4845077 | MS.gene78356:CDS |
| CATTTAGAACATCGACCAGG+TGG | 0.641325 | 2.3:-4844855 | None:intergenic |
| ATGGTATTCCAATAGGTCCG+AGG | 0.647704 | 2.3:+4848067 | MS.gene78356:CDS |
| AAGGTGCTGCAAAAGAAGGT+GGG | 0.649452 | 2.3:+4841455 | MS.gene78356:CDS |
| GTGATGGAAGCTGAGCGTAA+TGG | 0.654628 | 2.3:+4848048 | MS.gene78356:intron |
| ACCTACACTCATAAGTACCC+AGG | 0.657993 | 2.3:+4841499 | MS.gene78356:CDS |
| GCTTTAGAGGATGAGTATGG+TGG | 0.659991 | 2.3:+4844484 | MS.gene78356:CDS |
| GTTCATGGAACCACTAACAA+CGG | 0.661333 | 2.3:+4847733 | MS.gene78356:CDS |
| AATAAACCAATTAGACACCA+AGG | 0.664221 | 2.3:-4845094 | None:intergenic |
| TAGAAGCAATGGAGATGTCG+CGG | 0.675367 | 2.3:+4843109 | MS.gene78356:CDS |
| ATAGAAGGAAAGCTTAAGGG+AGG | 0.677337 | 2.3:+4844252 | MS.gene78356:intron |
| ATAGTAGTGTTACCTTATAG+CGG | 0.679969 | 2.3:-4843145 | None:intergenic |
| ACCTGGGTACTTATGAGTGT+AGG | 0.680959 | 2.3:-4841500 | None:intergenic |
| TCGATCAAAATGCTGCTGAG+CGG | 0.686095 | 2.3:+4845136 | MS.gene78356:CDS |
| ATACTTCTTCTTGTACACAT+GGG | 0.687173 | 2.3:-4844964 | None:intergenic |
| ATTTAGAACATCGACCAGGT+GGG | 0.698729 | 2.3:-4844854 | None:intergenic |
| GAATATAAAAGAGATGACGA+TGG | 0.704307 | 2.3:-4848528 | None:intergenic |
| TCATGGAACCACTAACAACG+GGG | 0.788161 | 2.3:+4847735 | MS.gene78356:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 4841034 | 4848858 | 4841034 | ID=MS.gene78356 |
| chr2.3 | mRNA | 4841034 | 4848858 | 4841034 | ID=MS.gene78356.t1;Parent=MS.gene78356 |
| chr2.3 | exon | 4841034 | 4841125 | 4841034 | ID=MS.gene78356.t1.exon1;Parent=MS.gene78356.t1 |
| chr2.3 | CDS | 4841034 | 4841125 | 4841034 | ID=cds.MS.gene78356.t1;Parent=MS.gene78356.t1 |
| chr2.3 | exon | 4841451 | 4841520 | 4841451 | ID=MS.gene78356.t1.exon2;Parent=MS.gene78356.t1 |
| chr2.3 | CDS | 4841451 | 4841520 | 4841451 | ID=cds.MS.gene78356.t1;Parent=MS.gene78356.t1 |
| chr2.3 | exon | 4843096 | 4843154 | 4843096 | ID=MS.gene78356.t1.exon3;Parent=MS.gene78356.t1 |
| chr2.3 | CDS | 4843096 | 4843154 | 4843096 | ID=cds.MS.gene78356.t1;Parent=MS.gene78356.t1 |
| chr2.3 | exon | 4844052 | 4844127 | 4844052 | ID=MS.gene78356.t1.exon4;Parent=MS.gene78356.t1 |
| chr2.3 | CDS | 4844052 | 4844127 | 4844052 | ID=cds.MS.gene78356.t1;Parent=MS.gene78356.t1 |
| chr2.3 | exon | 4844256 | 4844333 | 4844256 | ID=MS.gene78356.t1.exon5;Parent=MS.gene78356.t1 |
| chr2.3 | CDS | 4844256 | 4844333 | 4844256 | ID=cds.MS.gene78356.t1;Parent=MS.gene78356.t1 |
| chr2.3 | exon | 4844440 | 4844527 | 4844440 | ID=MS.gene78356.t1.exon6;Parent=MS.gene78356.t1 |
| chr2.3 | CDS | 4844440 | 4844527 | 4844440 | ID=cds.MS.gene78356.t1;Parent=MS.gene78356.t1 |
| chr2.3 | exon | 4844734 | 4844989 | 4844734 | ID=MS.gene78356.t1.exon7;Parent=MS.gene78356.t1 |
| chr2.3 | CDS | 4844734 | 4844989 | 4844734 | ID=cds.MS.gene78356.t1;Parent=MS.gene78356.t1 |
| chr2.3 | exon | 4845066 | 4845181 | 4845066 | ID=MS.gene78356.t1.exon8;Parent=MS.gene78356.t1 |
| chr2.3 | CDS | 4845066 | 4845181 | 4845066 | ID=cds.MS.gene78356.t1;Parent=MS.gene78356.t1 |
| chr2.3 | exon | 4847733 | 4847950 | 4847733 | ID=MS.gene78356.t1.exon9;Parent=MS.gene78356.t1 |
| chr2.3 | CDS | 4847733 | 4847950 | 4847733 | ID=cds.MS.gene78356.t1;Parent=MS.gene78356.t1 |
| chr2.3 | exon | 4848058 | 4848089 | 4848058 | ID=MS.gene78356.t1.exon10;Parent=MS.gene78356.t1 |
| chr2.3 | CDS | 4848058 | 4848089 | 4848058 | ID=cds.MS.gene78356.t1;Parent=MS.gene78356.t1 |
| chr2.3 | exon | 4848170 | 4848272 | 4848170 | ID=MS.gene78356.t1.exon11;Parent=MS.gene78356.t1 |
| chr2.3 | CDS | 4848170 | 4848272 | 4848170 | ID=cds.MS.gene78356.t1;Parent=MS.gene78356.t1 |
| chr2.3 | exon | 4848455 | 4848563 | 4848455 | ID=MS.gene78356.t1.exon12;Parent=MS.gene78356.t1 |
| chr2.3 | CDS | 4848455 | 4848563 | 4848455 | ID=cds.MS.gene78356.t1;Parent=MS.gene78356.t1 |
| chr2.3 | exon | 4848687 | 4848858 | 4848687 | ID=MS.gene78356.t1.exon13;Parent=MS.gene78356.t1 |
| chr2.3 | CDS | 4848687 | 4848858 | 4848687 | ID=cds.MS.gene78356.t1;Parent=MS.gene78356.t1 |
| Gene Sequence |
| Protein sequence |
