Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82036.t1 | XP_003600926.1 | 95.2 | 231 | 11 | 0 | 1 | 231 | 1 | 231 | 4.80E-111 | 410.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82036.t1 | G7JBT7 | 95.2 | 231 | 11 | 0 | 1 | 231 | 1 | 231 | 3.5e-111 | 410.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene82036 | 0.829282 | 5.62E-55 | -1.69E-46 |
| MS.gene049217 | MS.gene82036 | 0.822549 | 2.23E-53 | -1.69E-46 |
| MS.gene049222 | MS.gene82036 | 0.807706 | 4.43E-50 | -1.69E-46 |
| MS.gene049356 | MS.gene82036 | 0.847463 | 1.14E-59 | -1.69E-46 |
| MS.gene049369 | MS.gene82036 | 0.81943 | 1.17E-52 | -1.69E-46 |
| MS.gene049488 | MS.gene82036 | 0.805581 | 1.25E-49 | -1.69E-46 |
| MS.gene049609 | MS.gene82036 | 0.820475 | 6.73E-53 | -1.69E-46 |
| MS.gene049633 | MS.gene82036 | 0.800185 | 1.62E-48 | -1.69E-46 |
| MS.gene049805 | MS.gene82036 | 0.832509 | 9.08E-56 | -1.69E-46 |
| MS.gene050432 | MS.gene82036 | 0.8057 | 1.18E-49 | -1.69E-46 |
| MS.gene050444 | MS.gene82036 | 0.840802 | 6.98E-58 | -1.69E-46 |
| MS.gene050529 | MS.gene82036 | 0.805647 | 1.21E-49 | -1.69E-46 |
| MS.gene050593 | MS.gene82036 | 0.822725 | 2.03E-53 | -1.69E-46 |
| MS.gene050670 | MS.gene82036 | 0.857592 | 1.47E-62 | -1.69E-46 |
| MS.gene050675 | MS.gene82036 | 0.80564 | 1.21E-49 | -1.69E-46 |
| MS.gene050690 | MS.gene82036 | 0.808653 | 2.79E-50 | -1.69E-46 |
| MS.gene050772 | MS.gene82036 | 0.817334 | 3.48E-52 | -1.69E-46 |
| MS.gene05080 | MS.gene82036 | 0.843536 | 1.32E-58 | -1.69E-46 |
| MS.gene05105 | MS.gene82036 | 0.846351 | 2.29E-59 | -1.69E-46 |
| MS.gene051228 | MS.gene82036 | 0.832831 | 7.55E-56 | -1.69E-46 |
| MS.gene051387 | MS.gene82036 | 0.812971 | 3.24E-51 | -1.69E-46 |
| MS.gene051666 | MS.gene82036 | 0.845453 | 4.02E-59 | -1.69E-46 |
| MS.gene051734 | MS.gene82036 | 0.802185 | 6.33E-49 | -1.69E-46 |
| MS.gene051838 | MS.gene82036 | 0.827992 | 1.15E-54 | -1.69E-46 |
| MS.gene051858 | MS.gene82036 | 0.816537 | 5.25E-52 | -1.69E-46 |
| MS.gene051874 | MS.gene82036 | 0.825013 | 5.91E-54 | -1.69E-46 |
| MS.gene052078 | MS.gene82036 | 0.813338 | 2.69E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene82036 | 0.865306 | 6.50E-65 | -1.69E-46 |
| MS.gene052290 | MS.gene82036 | 0.80839 | 3.17E-50 | -1.69E-46 |
| MS.gene052310 | MS.gene82036 | 0.843046 | 1.78E-58 | -1.69E-46 |
| MS.gene052340 | MS.gene82036 | 0.817822 | 2.70E-52 | -1.69E-46 |
| MS.gene052379 | MS.gene82036 | 0.811194 | 7.91E-51 | -1.69E-46 |
| MS.gene052421 | MS.gene82036 | 0.820911 | 5.34E-53 | -1.69E-46 |
| MS.gene052469 | MS.gene82036 | 0.816391 | 5.66E-52 | -1.69E-46 |
| MS.gene052484 | MS.gene82036 | 0.815786 | 7.74E-52 | -1.69E-46 |
| MS.gene052615 | MS.gene82036 | 0.80996 | 1.46E-50 | -1.69E-46 |
| MS.gene052870 | MS.gene82036 | 0.835016 | 2.14E-56 | -1.69E-46 |
| MS.gene052872 | MS.gene82036 | 0.834256 | 3.33E-56 | -1.69E-46 |
| MS.gene053009 | MS.gene82036 | 0.845069 | 5.11E-59 | -1.69E-46 |
| MS.gene053103 | MS.gene82036 | 0.819379 | 1.20E-52 | -1.69E-46 |
| MS.gene053104 | MS.gene82036 | 0.814938 | 1.19E-51 | -1.69E-46 |
| MS.gene053207 | MS.gene82036 | 0.818173 | 2.25E-52 | -1.69E-46 |
| MS.gene053209 | MS.gene82036 | 0.808061 | 3.73E-50 | -1.69E-46 |
| MS.gene053384 | MS.gene82036 | 0.814555 | 1.45E-51 | -1.69E-46 |
| MS.gene053449 | MS.gene82036 | 0.81622 | 6.19E-52 | -1.69E-46 |
| MS.gene053632 | MS.gene82036 | 0.855909 | 4.60E-62 | -1.69E-46 |
| MS.gene053758 | MS.gene82036 | 0.814271 | 1.68E-51 | -1.69E-46 |
| MS.gene053912 | MS.gene82036 | 0.877961 | 4.13E-69 | -1.69E-46 |
| MS.gene053916 | MS.gene82036 | 0.867307 | 1.51E-65 | -1.69E-46 |
| MS.gene054123 | MS.gene82036 | 0.820495 | 6.66E-53 | -1.69E-46 |
| MS.gene054290 | MS.gene82036 | -0.806153 | 9.45E-50 | -1.69E-46 |
| MS.gene05494 | MS.gene82036 | 0.825869 | 3.71E-54 | -1.69E-46 |
| MS.gene054955 | MS.gene82036 | 0.821384 | 4.16E-53 | -1.69E-46 |
| MS.gene05505 | MS.gene82036 | 0.844152 | 9.02E-59 | -1.69E-46 |
| MS.gene055116 | MS.gene82036 | 0.815288 | 9.98E-52 | -1.69E-46 |
| MS.gene055206 | MS.gene82036 | 0.842002 | 3.37E-58 | -1.69E-46 |
| MS.gene055254 | MS.gene82036 | 0.80058 | 1.35E-48 | -1.69E-46 |
| MS.gene055397 | MS.gene82036 | 0.818109 | 2.33E-52 | -1.69E-46 |
| MS.gene055577 | MS.gene82036 | 0.811629 | 6.36E-51 | -1.69E-46 |
| MS.gene055722 | MS.gene82036 | 0.808647 | 2.79E-50 | -1.69E-46 |
| MS.gene05592 | MS.gene82036 | 0.83099 | 2.15E-55 | -1.69E-46 |
| MS.gene055941 | MS.gene82036 | 0.83735 | 5.47E-57 | -1.69E-46 |
| MS.gene05602 | MS.gene82036 | 0.800945 | 1.14E-48 | -1.69E-46 |
| MS.gene056407 | MS.gene82036 | 0.81253 | 4.05E-51 | -1.69E-46 |
| MS.gene056487 | MS.gene82036 | 0.816581 | 5.14E-52 | -1.69E-46 |
| MS.gene056511 | MS.gene82036 | 0.852159 | 5.54E-61 | -1.69E-46 |
| MS.gene056609 | MS.gene82036 | 0.859365 | 4.35E-63 | -1.69E-46 |
| MS.gene05664 | MS.gene82036 | 0.859536 | 3.86E-63 | -1.69E-46 |
| MS.gene056659 | MS.gene82036 | 0.84654 | 2.04E-59 | -1.69E-46 |
| MS.gene05666 | MS.gene82036 | 0.835737 | 1.41E-56 | -1.69E-46 |
| MS.gene056719 | MS.gene82036 | 0.833338 | 5.65E-56 | -1.69E-46 |
| MS.gene057076 | MS.gene82036 | 0.84764 | 1.02E-59 | -1.69E-46 |
| MS.gene057124 | MS.gene82036 | 0.828545 | 8.47E-55 | -1.69E-46 |
| MS.gene057129 | MS.gene82036 | 0.812595 | 3.92E-51 | -1.69E-46 |
| MS.gene057146 | MS.gene82036 | 0.808168 | 3.54E-50 | -1.69E-46 |
| MS.gene05735 | MS.gene82036 | 0.841157 | 5.63E-58 | -1.69E-46 |
| MS.gene057416 | MS.gene82036 | 0.819964 | 8.81E-53 | -1.69E-46 |
| MS.gene057734 | MS.gene82036 | 0.840886 | 6.64E-58 | -1.69E-46 |
| MS.gene057749 | MS.gene82036 | 0.813707 | 2.23E-51 | -1.69E-46 |
| MS.gene057823 | MS.gene82036 | 0.824248 | 8.94E-54 | -1.69E-46 |
| MS.gene057926 | MS.gene82036 | 0.807498 | 4.91E-50 | -1.69E-46 |
| MS.gene057927 | MS.gene82036 | 0.820629 | 6.20E-53 | -1.69E-46 |
| MS.gene058019 | MS.gene82036 | 0.807299 | 5.41E-50 | -1.69E-46 |
| MS.gene058082 | MS.gene82036 | 0.856233 | 3.69E-62 | -1.69E-46 |
| MS.gene058120 | MS.gene82036 | 0.808997 | 2.35E-50 | -1.69E-46 |
| MS.gene058365 | MS.gene82036 | 0.816023 | 6.85E-52 | -1.69E-46 |
| MS.gene058660 | MS.gene82036 | 0.814175 | 1.76E-51 | -1.69E-46 |
| MS.gene058723 | MS.gene82036 | 0.823383 | 1.43E-53 | -1.69E-46 |
| MS.gene058748 | MS.gene82036 | 0.813209 | 2.87E-51 | -1.69E-46 |
| MS.gene058838 | MS.gene82036 | 0.804754 | 1.86E-49 | -1.69E-46 |
| MS.gene05886 | MS.gene82036 | 0.806241 | 9.05E-50 | -1.69E-46 |
| MS.gene058928 | MS.gene82036 | 0.825933 | 3.58E-54 | -1.69E-46 |
| MS.gene058948 | MS.gene82036 | 0.812291 | 4.57E-51 | -1.69E-46 |
| MS.gene058993 | MS.gene82036 | 0.830646 | 2.61E-55 | -1.69E-46 |
| MS.gene059285 | MS.gene82036 | 0.805559 | 1.26E-49 | -1.69E-46 |
| MS.gene05934 | MS.gene82036 | 0.833441 | 5.33E-56 | -1.69E-46 |
| MS.gene059366 | MS.gene82036 | 0.829724 | 4.38E-55 | -1.69E-46 |
| MS.gene059597 | MS.gene82036 | 0.816424 | 5.57E-52 | -1.69E-46 |
| MS.gene05959 | MS.gene82036 | 0.826142 | 3.19E-54 | -1.69E-46 |
| MS.gene059676 | MS.gene82036 | 0.850873 | 1.28E-60 | -1.69E-46 |
| MS.gene059688 | MS.gene82036 | 0.823102 | 1.66E-53 | -1.69E-46 |
| MS.gene059692 | MS.gene82036 | 0.818937 | 1.51E-52 | -1.69E-46 |
| MS.gene059695 | MS.gene82036 | 0.820581 | 6.36E-53 | -1.69E-46 |
| MS.gene059711 | MS.gene82036 | 0.837146 | 6.17E-57 | -1.69E-46 |
| MS.gene059718 | MS.gene82036 | 0.816 | 6.93E-52 | -1.69E-46 |
| MS.gene05986 | MS.gene82036 | 0.813466 | 2.52E-51 | -1.69E-46 |
| MS.gene059902 | MS.gene82036 | 0.807461 | 5.00E-50 | -1.69E-46 |
| MS.gene059960 | MS.gene82036 | 0.816971 | 4.20E-52 | -1.69E-46 |
| MS.gene060496 | MS.gene82036 | 0.811025 | 8.61E-51 | -1.69E-46 |
| MS.gene060804 | MS.gene82036 | 0.836432 | 9.39E-57 | -1.69E-46 |
| MS.gene060818 | MS.gene82036 | 0.858524 | 7.77E-63 | -1.69E-46 |
| MS.gene060835 | MS.gene82036 | 0.837578 | 4.79E-57 | -1.69E-46 |
| MS.gene060837 | MS.gene82036 | 0.822458 | 2.34E-53 | -1.69E-46 |
| MS.gene06092 | MS.gene82036 | 0.800608 | 1.33E-48 | -1.69E-46 |
| MS.gene061041 | MS.gene82036 | 0.860792 | 1.61E-63 | -1.69E-46 |
| MS.gene061051 | MS.gene82036 | -0.830675 | 2.57E-55 | -1.69E-46 |
| MS.gene061154 | MS.gene82036 | 0.806733 | 7.13E-50 | -1.69E-46 |
| MS.gene061200 | MS.gene82036 | 0.803317 | 3.69E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82036.t1 | MTR_3g070960 | 95.238 | 231 | 11 | 0 | 1 | 231 | 1 | 231 | 2.34e-162 | 448 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82036.t1 | AT3G56010 | 58.519 | 135 | 44 | 4 | 99 | 231 | 77 | 201 | 3.42e-48 | 157 |
Find 52 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTCATTAGTCATTAAAA+TGG | 0.237690 | 3.2:-64543310 | None:intergenic |
| AACAAATTACCAGGGGCTTC+TGG | 0.243956 | 3.2:-64543140 | None:intergenic |
| TTCAACAGATGCTAGTAATA+AGG | 0.322512 | 3.2:+64542833 | MS.gene82036:CDS |
| TGAGATGATCGTGTGGTTAC+AGG | 0.325931 | 3.2:-64542975 | None:intergenic |
| TTTGTCAAGGAGAAAAGATT+TGG | 0.326672 | 3.2:+64542777 | MS.gene82036:CDS |
| TTTATCAGCACAGTGATGTT+TGG | 0.378545 | 3.2:+64543254 | MS.gene82036:CDS |
| GTGTGCTCTGAGTGGCCTTC+GGG | 0.390366 | 3.2:-64542725 | None:intergenic |
| AGAAAGTGAGAGAGAGGATA+AGG | 0.396564 | 3.2:+64542997 | MS.gene82036:CDS |
| TCAAAAGTCCAACCTTCCTT+TGG | 0.411926 | 3.2:-64543185 | None:intergenic |
| AGTGTGCTCTGAGTGGCCTT+CGG | 0.416107 | 3.2:-64542726 | None:intergenic |
| GTCTGTGATTCTGCCTGAGC+AGG | 0.422298 | 3.2:-64542909 | None:intergenic |
| GTGGTTACAGGTTGCGACTT+AGG | 0.426739 | 3.2:-64542963 | None:intergenic |
| GGTAGATGTTAACTGATCAT+TGG | 0.433318 | 3.2:-64542883 | None:intergenic |
| CAAACTATCACGATGCATCT+AGG | 0.448156 | 3.2:+64542682 | MS.gene82036:CDS |
| CTGTCATCAAACAAATTACC+AGG | 0.451100 | 3.2:-64543149 | None:intergenic |
| GATGCTAGTAATAAGGATAC+TGG | 0.451608 | 3.2:+64542840 | MS.gene82036:CDS |
| GGCCTTCGGGAAAGAAGCTC+CGG | 0.457076 | 3.2:-64542712 | None:intergenic |
| GAAAGTGAGAGAGAGGATAA+GGG | 0.460702 | 3.2:+64542998 | MS.gene82036:CDS |
| TGATTCTGCCTGAGCAGGAT+TGG | 0.469008 | 3.2:-64542904 | None:intergenic |
| AAAACAGCTAAATCAGAAAT+GGG | 0.480346 | 3.2:+64543053 | MS.gene82036:CDS |
| GCAGATCCATTGGAAACCTC+TGG | 0.503333 | 3.2:-64542933 | None:intergenic |
| CGTTGAGGTGAAGCTGATGA+TGG | 0.510936 | 3.2:-64541780 | None:intergenic |
| AACATCTACCAATCCTGCTC+AGG | 0.512154 | 3.2:+64542896 | MS.gene82036:CDS |
| AGGAGATGCTGCAGATCCAT+TGG | 0.516503 | 3.2:-64542943 | None:intergenic |
| CTAGTAATAAGGATACTGGC+AGG | 0.528322 | 3.2:+64542844 | MS.gene82036:CDS |
| TGCCGGAGCTTCTTTCCCGA+AGG | 0.532920 | 3.2:+64542710 | MS.gene82036:CDS |
| ACTTACATTGTGTGGAAAGT+TGG | 0.543190 | 3.2:+64543281 | MS.gene82036:CDS |
| TTGGAACAACTTACATTGTG+TGG | 0.560213 | 3.2:+64543273 | MS.gene82036:CDS |
| GAGGGATGCCAAAGGAAGGT+TGG | 0.568563 | 3.2:+64543177 | MS.gene82036:CDS |
| CATCTCAGAAAGTGAGAGAG+AGG | 0.580497 | 3.2:+64542991 | MS.gene82036:CDS |
| ACACTCGTTTCGATAACGTC+GGG | 0.594355 | 3.2:+64542744 | MS.gene82036:CDS |
| TTGTTTGATGACAGCAAACG+AGG | 0.599920 | 3.2:+64543158 | MS.gene82036:CDS |
| TCTGGACTTCCAGAAGCCCC+TGG | 0.604678 | 3.2:+64543131 | MS.gene82036:CDS |
| GATGCATCTAGGTATTCTGC+CGG | 0.605736 | 3.2:+64542693 | MS.gene82036:CDS |
| CACTTTCTGAGATGATCGTG+TGG | 0.606839 | 3.2:-64542982 | None:intergenic |
| AAACGAGGGATGCCAAAGGA+AGG | 0.625366 | 3.2:+64543173 | MS.gene82036:CDS |
| TCGAGTTCTTAACCAGTCCA+AGG | 0.632326 | 3.2:+64543025 | MS.gene82036:CDS |
| CATCATCAGCTTCACCTCAA+CGG | 0.635332 | 3.2:+64541781 | MS.gene82036:CDS |
| TAGTAATAAGGATACTGGCA+GGG | 0.635455 | 3.2:+64542845 | MS.gene82036:CDS |
| GGGAACAAGAATGTTTGTCA+AGG | 0.643523 | 3.2:+64542764 | MS.gene82036:CDS |
| CAGCAAACGAGGGATGCCAA+AGG | 0.649716 | 3.2:+64543169 | MS.gene82036:CDS |
| CAGACACCAGAGGTTTCCAA+TGG | 0.649775 | 3.2:+64542927 | MS.gene82036:CDS |
| GTTGAGGTGAAGCTGATGAT+GGG | 0.654569 | 3.2:-64541779 | None:intergenic |
| AGAAAGAGATCAGAACCACC+AGG | 0.655199 | 3.2:-64543212 | None:intergenic |
| TGTTTGATGACAGCAAACGA+GGG | 0.666281 | 3.2:+64543159 | MS.gene82036:CDS |
| AGAAATGGGAAGTAGTGTGT+TGG | 0.668878 | 3.2:+64543067 | MS.gene82036:CDS |
| CACACTCGTTTCGATAACGT+CGG | 0.679278 | 3.2:+64542743 | MS.gene82036:CDS |
| GGCAGAATCACAGACACCAG+AGG | 0.679651 | 3.2:+64542917 | MS.gene82036:CDS |
| TGTCATCAAACAAATTACCA+GGG | 0.683437 | 3.2:-64543148 | None:intergenic |
| AGTGAGAGAGAGGATAAGGG+CGG | 0.687543 | 3.2:+64543001 | MS.gene82036:CDS |
| GTCATCAAACAAATTACCAG+GGG | 0.699685 | 3.2:-64543147 | None:intergenic |
| CGAAACGAGTGTGCTCTGAG+TGG | 0.707929 | 3.2:-64542733 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATAATTGAATTATATTGA+AGG | - | chr3.2:64542597-64542616 | None:intergenic | 15.0% |
| !! | ATTATCTTCTAATATGTAAT+AGG | + | chr3.2:64542537-64542556 | MS.gene82036:intron | 15.0% |
| !! | AAGGAAATATGACTATTTAA+AGG | - | chr3.2:64542257-64542276 | None:intergenic | 20.0% |
| !! | AGGAAATATGACTATTTAAA+GGG | - | chr3.2:64542256-64542275 | None:intergenic | 20.0% |
| !! | ATACTAAACATTATTTGACT+TGG | + | chr3.2:64541936-64541955 | MS.gene82036:intron | 20.0% |
| !!! | AGTTTATAGATTTAAGGTTA+TGG | + | chr3.2:64541851-64541870 | MS.gene82036:intron | 20.0% |
| !!! | CACTTTAGTTTATAGATTTA+AGG | + | chr3.2:64541845-64541864 | MS.gene82036:intron | 20.0% |
| !!! | TACTAAACATTATTTGACTT+GGG | + | chr3.2:64541937-64541956 | MS.gene82036:intron | 20.0% |
| ! | AAAAACAGCTAAATCAGAAA+TGG | + | chr3.2:64543052-64543071 | MS.gene82036:CDS | 25.0% |
| ! | AAAACAGCTAAATCAGAAAT+GGG | + | chr3.2:64543053-64543072 | MS.gene82036:CDS | 25.0% |
| ! | CCCAAAATTGACATATAAAA+GGG | - | chr3.2:64542496-64542515 | None:intergenic | 25.0% |
| ! | TAAATAGTCATATTTCCTTG+TGG | + | chr3.2:64542258-64542277 | MS.gene82036:intron | 25.0% |
| ! | TAACAACGTGTTATGTTAAT+CGG | + | chr3.2:64542008-64542027 | MS.gene82036:intron | 25.0% |
| ! | TATAAAATGCGCTATATCTA+TGG | + | chr3.2:64542095-64542114 | MS.gene82036:intron | 25.0% |
| ! | TCCCAAAATTGACATATAAA+AGG | - | chr3.2:64542497-64542516 | None:intergenic | 25.0% |
| ! | TTAACATAAAGCAATTTCAC+TGG | - | chr3.2:64542075-64542094 | None:intergenic | 25.0% |
| !! | ATTTGCTTGTAATTGATTCT+TGG | + | chr3.2:64541907-64541926 | MS.gene82036:intron | 25.0% |
| !! | CCCTTTTATATGTCAATTTT+GGG | + | chr3.2:64542493-64542512 | MS.gene82036:intron | 25.0% |
| !! | TCCCTTTTATATGTCAATTT+TGG | + | chr3.2:64542492-64542511 | MS.gene82036:intron | 25.0% |
| !!! | ATTTCTGATTTAGCTGTTTT+TGG | - | chr3.2:64543053-64543072 | None:intergenic | 25.0% |
| !!! | TTGTTTGATGATGAAAATGT+TGG | + | chr3.2:64542445-64542464 | MS.gene82036:intron | 25.0% |
| ATCTCAATTGATCCAATTGA+AGG | - | chr3.2:64542183-64542202 | None:intergenic | 30.0% | |
| CAATTGGATCAATTGAGATA+TGG | + | chr3.2:64542184-64542203 | MS.gene82036:intron | 30.0% | |
| CACTATTTGCAACTGAAAAA+CGG | - | chr3.2:64542806-64542825 | None:intergenic | 30.0% | |
| TGTCATCAAACAAATTACCA+GGG | - | chr3.2:64543151-64543170 | None:intergenic | 30.0% | |
| TTCAACAGATGCTAGTAATA+AGG | + | chr3.2:64542833-64542852 | MS.gene82036:CDS | 30.0% | |
| TTTCATTATCCCTTAGAAGT+TGG | + | chr3.2:64542656-64542675 | MS.gene82036:intron | 30.0% | |
| TTTGTCAAGGAGAAAAGATT+TGG | + | chr3.2:64542777-64542796 | MS.gene82036:CDS | 30.0% | |
| ! | AGTTTGTTTCCAACTTCTAA+GGG | - | chr3.2:64542668-64542687 | None:intergenic | 30.0% |
| ! | TAAGAAGAGTGTGTTAGTTA+TGG | + | chr3.2:64541874-64541893 | MS.gene82036:intron | 30.0% |
| !! | CTTTTAAAGAAAGTGACAGA+GGG | + | chr3.2:64543093-64543112 | MS.gene82036:CDS | 30.0% |
| !! | GGTGAGATTTATTGATTCAA+TGG | + | chr3.2:64542205-64542224 | MS.gene82036:intron | 30.0% |
| !! | TAGTTTGTTTCCAACTTCTA+AGG | - | chr3.2:64542669-64542688 | None:intergenic | 30.0% |
| ACTTACATTGTGTGGAAAGT+TGG | + | chr3.2:64543281-64543300 | MS.gene82036:CDS | 35.0% | |
| CTGTCATCAAACAAATTACC+AGG | - | chr3.2:64543152-64543171 | None:intergenic | 35.0% | |
| CTTTGCAGTTATGTTGTGAT+CGG | + | chr3.2:64542394-64542413 | MS.gene82036:intron | 35.0% | |
| GAACTTAACAAAGATCCACA+AGG | - | chr3.2:64542276-64542295 | None:intergenic | 35.0% | |
| GATGCTAGTAATAAGGATAC+TGG | + | chr3.2:64542840-64542859 | MS.gene82036:CDS | 35.0% | |
| GGTAGATGTTAACTGATCAT+TGG | - | chr3.2:64542886-64542905 | None:intergenic | 35.0% | |
| GTCATCAAACAAATTACCAG+GGG | - | chr3.2:64543150-64543169 | None:intergenic | 35.0% | |
| TAATCGGAAACAGTATTCCT+GGG | + | chr3.2:64542024-64542043 | MS.gene82036:intron | 35.0% | |
| TAGTAATAAGGATACTGGCA+GGG | + | chr3.2:64542845-64542864 | MS.gene82036:CDS | 35.0% | |
| TGAAGGACTTACTGATCAAA+TGG | - | chr3.2:64542166-64542185 | None:intergenic | 35.0% | |
| TGATCAGTAAGTCCTTCAAT+TGG | + | chr3.2:64542168-64542187 | MS.gene82036:intron | 35.0% | |
| TTAATCGGAAACAGTATTCC+TGG | + | chr3.2:64542023-64542042 | MS.gene82036:intron | 35.0% | |
| TTGGAACAACTTACATTGTG+TGG | + | chr3.2:64543273-64543292 | MS.gene82036:CDS | 35.0% | |
| TTTATCAGCACAGTGATGTT+TGG | + | chr3.2:64543254-64543273 | MS.gene82036:CDS | 35.0% | |
| !! | GCTTTTAAAGAAAGTGACAG+AGG | + | chr3.2:64543092-64543111 | MS.gene82036:CDS | 35.0% |
| !!! | TTTAGCTGTTTTTGGTTCCT+TGG | - | chr3.2:64543045-64543064 | None:intergenic | 35.0% |
| AAAGTGACAGAGGGAAAAAG+AGG | + | chr3.2:64543102-64543121 | MS.gene82036:CDS | 40.0% | |
| AGAAAGTGAGAGAGAGGATA+AGG | + | chr3.2:64542997-64543016 | MS.gene82036:CDS | 40.0% | |
| AGAAATGGGAAGTAGTGTGT+TGG | + | chr3.2:64543067-64543086 | MS.gene82036:CDS | 40.0% | |
| CAAACTATCACGATGCATCT+AGG | + | chr3.2:64542682-64542701 | MS.gene82036:CDS | 40.0% | |
| CATTAAACCAAAGTTCCAGG+TGG | + | chr3.2:64542312-64542331 | MS.gene82036:intron | 40.0% | |
| CTAGTAATAAGGATACTGGC+AGG | + | chr3.2:64542844-64542863 | MS.gene82036:CDS | 40.0% | |
| CTATCATAAGAAGTTCACCC+AGG | - | chr3.2:64542044-64542063 | None:intergenic | 40.0% | |
| CTATGGTGCACATGTTAAGT+AGG | + | chr3.2:64542112-64542131 | MS.gene82036:intron | 40.0% | |
| GAAAGTGAGAGAGAGGATAA+GGG | + | chr3.2:64542998-64543017 | MS.gene82036:CDS | 40.0% | |
| GATAGAAAAACGTACCGTTG+AGG | - | chr3.2:64541798-64541817 | None:intergenic | 40.0% | |
| GGGAACAAGAATGTTTGTCA+AGG | + | chr3.2:64542764-64542783 | MS.gene82036:CDS | 40.0% | |
| GTGCATTAAACCAAAGTTCC+AGG | + | chr3.2:64542309-64542328 | MS.gene82036:intron | 40.0% | |
| TCAAAAGTCCAACCTTCCTT+TGG | - | chr3.2:64543188-64543207 | None:intergenic | 40.0% | |
| ! | GTTAAGTAGGTGCTGTACTA+TGG | + | chr3.2:64542125-64542144 | MS.gene82036:intron | 40.0% |
| ! | TGTTTGATGACAGCAAACGA+GGG | + | chr3.2:64543159-64543178 | MS.gene82036:CDS | 40.0% |
| ! | TTGTTTGATGACAGCAAACG+AGG | + | chr3.2:64543158-64543177 | MS.gene82036:CDS | 40.0% |
| !!! | GGTTGGACTTTTGATTTTCC+TGG | + | chr3.2:64543194-64543213 | MS.gene82036:CDS | 40.0% |
| !!! | TGGACTTTTGATTTTCCTGG+TGG | + | chr3.2:64543197-64543216 | MS.gene82036:CDS | 40.0% |
| AACAAATTACCAGGGGCTTC+TGG | - | chr3.2:64543143-64543162 | None:intergenic | 45.0% | |
| AACATCTACCAATCCTGCTC+AGG | + | chr3.2:64542896-64542915 | MS.gene82036:CDS | 45.0% | |
| ACACTCGTTTCGATAACGTC+GGG | + | chr3.2:64542744-64542763 | MS.gene82036:CDS | 45.0% | |
| AGAAAGAGATCAGAACCACC+AGG | - | chr3.2:64543215-64543234 | None:intergenic | 45.0% | |
| AGAAAGTCCACCTGGAACTT+TGG | - | chr3.2:64542322-64542341 | None:intergenic | 45.0% | |
| CACACTCGTTTCGATAACGT+CGG | + | chr3.2:64542743-64542762 | MS.gene82036:CDS | 45.0% | |
| CATCATCAGCTTCACCTCAA+CGG | + | chr3.2:64541781-64541800 | MS.gene82036:CDS | 45.0% | |
| CATCTCAGAAAGTGAGAGAG+AGG | + | chr3.2:64542991-64543010 | MS.gene82036:CDS | 45.0% | |
| GATGCATCTAGGTATTCTGC+CGG | + | chr3.2:64542693-64542712 | MS.gene82036:CDS | 45.0% | |
| GGGAAAAAGAGGAGAAGATC+TGG | + | chr3.2:64543113-64543132 | MS.gene82036:CDS | 45.0% | |
| GTTGAGGTGAAGCTGATGAT+GGG | - | chr3.2:64541782-64541801 | None:intergenic | 45.0% | |
| TCGAGTTCTTAACCAGTCCA+AGG | + | chr3.2:64543025-64543044 | MS.gene82036:CDS | 45.0% | |
| TGAGATGATCGTGTGGTTAC+AGG | - | chr3.2:64542978-64542997 | None:intergenic | 45.0% | |
| ! | CATTCTAGAGAAAGTCCACC+TGG | - | chr3.2:64542330-64542349 | None:intergenic | 45.0% |
| !! | CACTTTCTGAGATGATCGTG+TGG | - | chr3.2:64542985-64543004 | None:intergenic | 45.0% |
| !!! | CTGTTTTTGGTTCCTTGGAC+TGG | - | chr3.2:64543040-64543059 | None:intergenic | 45.0% |
| AAACGAGGGATGCCAAAGGA+AGG | + | chr3.2:64543173-64543192 | MS.gene82036:CDS | 50.0% | |
| AGGAGATGCTGCAGATCCAT+TGG | - | chr3.2:64542946-64542965 | None:intergenic | 50.0% | |
| AGTGAGAGAGAGGATAAGGG+CGG | + | chr3.2:64543001-64543020 | MS.gene82036:CDS | 50.0% | |
| CAGACACCAGAGGTTTCCAA+TGG | + | chr3.2:64542927-64542946 | MS.gene82036:CDS | 50.0% | |
| CGTTGAGGTGAAGCTGATGA+TGG | - | chr3.2:64541783-64541802 | None:intergenic | 50.0% | |
| GCAGATCCATTGGAAACCTC+TGG | - | chr3.2:64542936-64542955 | None:intergenic | 50.0% | |
| GTGGTTACAGGTTGCGACTT+AGG | - | chr3.2:64542966-64542985 | None:intergenic | 50.0% | |
| TGATTCTGCCTGAGCAGGAT+TGG | - | chr3.2:64542907-64542926 | None:intergenic | 50.0% | |
| CAGCAAACGAGGGATGCCAA+AGG | + | chr3.2:64543169-64543188 | MS.gene82036:CDS | 55.0% | |
| GAGGGATGCCAAAGGAAGGT+TGG | + | chr3.2:64543177-64543196 | MS.gene82036:CDS | 55.0% | |
| GGCAGAATCACAGACACCAG+AGG | + | chr3.2:64542917-64542936 | MS.gene82036:CDS | 55.0% | |
| GTCTGTGATTCTGCCTGAGC+AGG | - | chr3.2:64542912-64542931 | None:intergenic | 55.0% | |
| ! | AGTGTGCTCTGAGTGGCCTT+CGG | - | chr3.2:64542729-64542748 | None:intergenic | 55.0% |
| ! | CGAAACGAGTGTGCTCTGAG+TGG | - | chr3.2:64542736-64542755 | None:intergenic | 55.0% |
| GGCCTTCGGGAAAGAAGCTC+CGG | - | chr3.2:64542715-64542734 | None:intergenic | 60.0% | |
| TCTGGACTTCCAGAAGCCCC+TGG | + | chr3.2:64543131-64543150 | MS.gene82036:CDS | 60.0% | |
| TGCCGGAGCTTCTTTCCCGA+AGG | + | chr3.2:64542710-64542729 | MS.gene82036:CDS | 60.0% | |
| ! | GTGTGCTCTGAGTGGCCTTC+GGG | - | chr3.2:64542728-64542747 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 64541761 | 64543325 | 64541761 | ID=MS.gene82036 |
| chr3.2 | mRNA | 64541761 | 64543325 | 64541761 | ID=MS.gene82036.t1;Parent=MS.gene82036 |
| chr3.2 | exon | 64541761 | 64541802 | 64541761 | ID=MS.gene82036.t1.exon1;Parent=MS.gene82036.t1 |
| chr3.2 | CDS | 64541761 | 64541802 | 64541761 | ID=cds.MS.gene82036.t1;Parent=MS.gene82036.t1 |
| chr3.2 | exon | 64542672 | 64543325 | 64542672 | ID=MS.gene82036.t1.exon2;Parent=MS.gene82036.t1 |
| chr3.2 | CDS | 64542672 | 64543325 | 64542672 | ID=cds.MS.gene82036.t1;Parent=MS.gene82036.t1 |
| Gene Sequence |
| Protein sequence |
