Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99826.t1 | XP_013459811.1 | 94.3 | 279 | 11 | 1 | 1 | 274 | 82 | 360 | 8.40E-147 | 529.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99826.t1 | Q9FIA1 | 48.1 | 283 | 136 | 5 | 1 | 273 | 93 | 374 | 3.3e-67 | 256.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99826.t1 | A0A072UW87 | 94.3 | 279 | 11 | 1 | 1 | 274 | 82 | 360 | 6.1e-147 | 529.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene99826 | 0.809012 | 2.33E-50 | -1.69E-46 |
| MS.gene049356 | MS.gene99826 | 0.815362 | 9.61E-52 | -1.69E-46 |
| MS.gene049369 | MS.gene99826 | 0.815341 | 9.71E-52 | -1.69E-46 |
| MS.gene049396 | MS.gene99826 | 0.82159 | 3.72E-53 | -1.69E-46 |
| MS.gene049488 | MS.gene99826 | 0.804485 | 2.11E-49 | -1.69E-46 |
| MS.gene049609 | MS.gene99826 | 0.835348 | 1.77E-56 | -1.69E-46 |
| MS.gene049633 | MS.gene99826 | 0.803609 | 3.21E-49 | -1.69E-46 |
| MS.gene049805 | MS.gene99826 | 0.809271 | 2.05E-50 | -1.69E-46 |
| MS.gene050747 | MS.gene99826 | 0.802096 | 6.60E-49 | -1.69E-46 |
| MS.gene050772 | MS.gene99826 | 0.8279 | 1.21E-54 | -1.69E-46 |
| MS.gene05081 | MS.gene99826 | 0.818207 | 2.21E-52 | -1.69E-46 |
| MS.gene050868 | MS.gene99826 | 0.802781 | 4.77E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene99826 | 0.806124 | 9.58E-50 | -1.69E-46 |
| MS.gene050971 | MS.gene99826 | 0.810157 | 1.33E-50 | -1.69E-46 |
| MS.gene05105 | MS.gene99826 | 0.820675 | 6.05E-53 | -1.69E-46 |
| MS.gene051438 | MS.gene99826 | 0.823138 | 1.63E-53 | -1.69E-46 |
| MS.gene051666 | MS.gene99826 | 0.804141 | 2.49E-49 | -1.69E-46 |
| MS.gene051692 | MS.gene99826 | 0.808143 | 3.58E-50 | -1.69E-46 |
| MS.gene051734 | MS.gene99826 | 0.817053 | 4.02E-52 | -1.69E-46 |
| MS.gene051838 | MS.gene99826 | 0.860004 | 2.79E-63 | -1.69E-46 |
| MS.gene051858 | MS.gene99826 | 0.825663 | 4.15E-54 | -1.69E-46 |
| MS.gene051941 | MS.gene99826 | 0.805149 | 1.53E-49 | -1.69E-46 |
| MS.gene052136 | MS.gene99826 | 0.819094 | 1.39E-52 | -1.69E-46 |
| MS.gene052164 | MS.gene99826 | 0.818569 | 1.83E-52 | -1.69E-46 |
| MS.gene052318 | MS.gene99826 | 0.801209 | 1.00E-48 | -1.69E-46 |
| MS.gene052346 | MS.gene99826 | 0.83184 | 1.33E-55 | -1.69E-46 |
| MS.gene052414 | MS.gene99826 | 0.867614 | 1.20E-65 | -1.69E-46 |
| MS.gene052421 | MS.gene99826 | 0.816237 | 6.13E-52 | -1.69E-46 |
| MS.gene052501 | MS.gene99826 | 0.811324 | 7.41E-51 | -1.69E-46 |
| MS.gene052503 | MS.gene99826 | 0.815865 | 7.43E-52 | -1.69E-46 |
| MS.gene052505 | MS.gene99826 | 0.803448 | 3.47E-49 | -1.69E-46 |
| MS.gene052615 | MS.gene99826 | 0.82384 | 1.12E-53 | -1.69E-46 |
| MS.gene052823 | MS.gene99826 | 0.811841 | 5.72E-51 | -1.69E-46 |
| MS.gene052825 | MS.gene99826 | 0.808808 | 2.58E-50 | -1.69E-46 |
| MS.gene052870 | MS.gene99826 | 0.812159 | 4.88E-51 | -1.69E-46 |
| MS.gene052872 | MS.gene99826 | 0.816975 | 4.19E-52 | -1.69E-46 |
| MS.gene052982 | MS.gene99826 | 0.803533 | 3.33E-49 | -1.69E-46 |
| MS.gene053207 | MS.gene99826 | 0.822263 | 2.60E-53 | -1.69E-46 |
| MS.gene053449 | MS.gene99826 | 0.817258 | 3.62E-52 | -1.69E-46 |
| MS.gene053480 | MS.gene99826 | 0.826483 | 2.65E-54 | -1.69E-46 |
| MS.gene053574 | MS.gene99826 | 0.813597 | 2.36E-51 | -1.69E-46 |
| MS.gene053632 | MS.gene99826 | 0.823975 | 1.04E-53 | -1.69E-46 |
| MS.gene053758 | MS.gene99826 | 0.82811 | 1.08E-54 | -1.69E-46 |
| MS.gene053824 | MS.gene99826 | 0.842339 | 2.75E-58 | -1.69E-46 |
| MS.gene053912 | MS.gene99826 | 0.853871 | 1.79E-61 | -1.69E-46 |
| MS.gene053916 | MS.gene99826 | 0.82542 | 4.73E-54 | -1.69E-46 |
| MS.gene054927 | MS.gene99826 | 0.824857 | 6.43E-54 | -1.69E-46 |
| MS.gene05494 | MS.gene99826 | 0.877481 | 6.07E-69 | -1.69E-46 |
| MS.gene05505 | MS.gene99826 | 0.842087 | 3.20E-58 | -1.69E-46 |
| MS.gene055206 | MS.gene99826 | 0.832734 | 7.98E-56 | -1.69E-46 |
| MS.gene055224 | MS.gene99826 | 0.80101 | 1.10E-48 | -1.69E-46 |
| MS.gene055289 | MS.gene99826 | 0.806426 | 8.27E-50 | -1.69E-46 |
| MS.gene055486 | MS.gene99826 | 0.82865 | 7.99E-55 | -1.69E-46 |
| MS.gene055577 | MS.gene99826 | 0.80265 | 5.07E-49 | -1.69E-46 |
| MS.gene055722 | MS.gene99826 | 0.83364 | 4.75E-56 | -1.69E-46 |
| MS.gene055741 | MS.gene99826 | 0.819279 | 1.26E-52 | -1.69E-46 |
| MS.gene055744 | MS.gene99826 | 0.81457 | 1.44E-51 | -1.69E-46 |
| MS.gene055909 | MS.gene99826 | 0.83766 | 4.56E-57 | -1.69E-46 |
| MS.gene055911 | MS.gene99826 | 0.827978 | 1.16E-54 | -1.69E-46 |
| MS.gene056166 | MS.gene99826 | 0.82173 | 3.46E-53 | -1.69E-46 |
| MS.gene056387 | MS.gene99826 | 0.834175 | 3.49E-56 | -1.69E-46 |
| MS.gene056448 | MS.gene99826 | 0.814308 | 1.65E-51 | -1.69E-46 |
| MS.gene056487 | MS.gene99826 | 0.832144 | 1.12E-55 | -1.69E-46 |
| MS.gene056511 | MS.gene99826 | 0.845635 | 3.59E-59 | -1.69E-46 |
| MS.gene05664 | MS.gene99826 | 0.804958 | 1.68E-49 | -1.69E-46 |
| MS.gene05666 | MS.gene99826 | 0.815542 | 8.76E-52 | -1.69E-46 |
| MS.gene057048 | MS.gene99826 | 0.839437 | 1.59E-57 | -1.69E-46 |
| MS.gene057076 | MS.gene99826 | 0.835833 | 1.33E-56 | -1.69E-46 |
| MS.gene057289 | MS.gene99826 | 0.82177 | 3.38E-53 | -1.69E-46 |
| MS.gene057658 | MS.gene99826 | 0.80101 | 1.10E-48 | -1.69E-46 |
| MS.gene057734 | MS.gene99826 | 0.839364 | 1.66E-57 | -1.69E-46 |
| MS.gene057749 | MS.gene99826 | 0.814332 | 1.63E-51 | -1.69E-46 |
| MS.gene057823 | MS.gene99826 | 0.821728 | 3.46E-53 | -1.69E-46 |
| MS.gene057856 | MS.gene99826 | 0.840794 | 7.02E-58 | -1.69E-46 |
| MS.gene057857 | MS.gene99826 | 0.828066 | 1.11E-54 | -1.69E-46 |
| MS.gene057926 | MS.gene99826 | 0.803226 | 3.86E-49 | -1.69E-46 |
| MS.gene058090 | MS.gene99826 | 0.804797 | 1.82E-49 | -1.69E-46 |
| MS.gene058120 | MS.gene99826 | 0.825625 | 4.23E-54 | -1.69E-46 |
| MS.gene058130 | MS.gene99826 | 0.803747 | 3.01E-49 | -1.69E-46 |
| MS.gene058157 | MS.gene99826 | 0.807522 | 4.85E-50 | -1.69E-46 |
| MS.gene058338 | MS.gene99826 | 0.82677 | 2.26E-54 | -1.69E-46 |
| MS.gene058376 | MS.gene99826 | 0.855728 | 5.19E-62 | -1.69E-46 |
| MS.gene058444 | MS.gene99826 | 0.815044 | 1.13E-51 | -1.69E-46 |
| MS.gene058723 | MS.gene99826 | 0.81167 | 6.23E-51 | -1.69E-46 |
| MS.gene058838 | MS.gene99826 | 0.827819 | 1.27E-54 | -1.69E-46 |
| MS.gene058928 | MS.gene99826 | 0.809696 | 1.67E-50 | -1.69E-46 |
| MS.gene058948 | MS.gene99826 | 0.817939 | 2.54E-52 | -1.69E-46 |
| MS.gene059023 | MS.gene99826 | 0.806975 | 6.34E-50 | -1.69E-46 |
| MS.gene05913 | MS.gene99826 | 0.800211 | 1.60E-48 | -1.69E-46 |
| MS.gene05934 | MS.gene99826 | 0.809212 | 2.12E-50 | -1.69E-46 |
| MS.gene059368 | MS.gene99826 | 0.809698 | 1.66E-50 | -1.69E-46 |
| MS.gene059455 | MS.gene99826 | 0.810596 | 1.07E-50 | -1.69E-46 |
| MS.gene059674 | MS.gene99826 | 0.843776 | 1.14E-58 | -1.69E-46 |
| MS.gene059711 | MS.gene99826 | 0.815751 | 7.88E-52 | -1.69E-46 |
| MS.gene059718 | MS.gene99826 | 0.811767 | 5.94E-51 | -1.69E-46 |
| MS.gene059902 | MS.gene99826 | 0.818869 | 1.56E-52 | -1.69E-46 |
| MS.gene060469 | MS.gene99826 | 0.833199 | 6.12E-56 | -1.69E-46 |
| MS.gene060485 | MS.gene99826 | 0.804084 | 2.56E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene99826 | 0.802009 | 6.87E-49 | -1.69E-46 |
| MS.gene060804 | MS.gene99826 | 0.800338 | 1.51E-48 | -1.69E-46 |
| MS.gene060835 | MS.gene99826 | 0.823721 | 1.19E-53 | -1.69E-46 |
| MS.gene060837 | MS.gene99826 | 0.852889 | 3.43E-61 | -1.69E-46 |
| MS.gene06097 | MS.gene99826 | 0.80489 | 1.74E-49 | -1.69E-46 |
| MS.gene061041 | MS.gene99826 | 0.823643 | 1.24E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 54 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAACTGCACTTACATAATT+TGG | 0.117449 | 3.1:+39364404 | None:intergenic |
| AAACCTTCACTCCATGTTAA+AGG | 0.251588 | 3.1:-39362984 | MS.gene99826:CDS |
| GTATTTAACTGACAATAAAT+TGG | 0.252298 | 3.1:+39363012 | None:intergenic |
| GGTGGTGCTGGAATATTTAA+AGG | 0.285187 | 3.1:-39364434 | MS.gene99826:CDS |
| TCCATCTTCTTTGTTGTGAT+TGG | 0.305205 | 3.1:-39363529 | MS.gene99826:CDS |
| ATAGACAAGACCATATCTTT+TGG | 0.336790 | 3.1:-39362715 | MS.gene99826:CDS |
| AACTTTGCCTCTGGTGGTGC+TGG | 0.348127 | 3.1:-39364446 | MS.gene99826:CDS |
| AAAGATATGGTCTTGTCTAT+TGG | 0.388766 | 3.1:+39362718 | None:intergenic |
| AGTAGCTCTTTCATACTAAC+AGG | 0.395222 | 3.1:+39362614 | None:intergenic |
| GAAGAATCGACAAAGCAAAT+AGG | 0.417938 | 3.1:-39363583 | MS.gene99826:CDS |
| CATGTTAAAGGAATGGCAAT+TGG | 0.427882 | 3.1:-39362972 | MS.gene99826:CDS |
| ATTGTCGATAGACTTTATAA+TGG | 0.436718 | 3.1:-39362656 | MS.gene99826:CDS |
| TTGGATTCTGAATGAGGTCT+TGG | 0.448841 | 3.1:+39362903 | None:intergenic |
| GGACTGAATCCCAAAAGATA+TGG | 0.451724 | 3.1:+39362705 | None:intergenic |
| AAAGCTGCATGTTGTGGAAT+TGG | 0.456571 | 3.1:-39362788 | MS.gene99826:CDS |
| AGTGGTGTTAACTTTGCCTC+TGG | 0.462882 | 3.1:-39364455 | MS.gene99826:CDS |
| CAATTGCCATTCCTTTAACA+TGG | 0.483611 | 3.1:+39362973 | None:intergenic |
| GTGATAATACCATGAGAAGT+TGG | 0.483668 | 3.1:+39362884 | None:intergenic |
| TCACAGAGATTATACAAAAG+TGG | 0.484891 | 3.1:-39363124 | MS.gene99826:intron |
| GCAAGGAGATTCGAGATTGC+TGG | 0.494301 | 3.1:-39363100 | MS.gene99826:CDS |
| GCCAATCACAACAAAGAAGA+TGG | 0.499649 | 3.1:+39363528 | None:intergenic |
| GTCATTAAAAGTGCAACTAC+AGG | 0.501266 | 3.1:-39363422 | MS.gene99826:intron |
| GAAGATGCTAGAGAGAGGTA+TGG | 0.509487 | 3.1:+39364494 | None:intergenic |
| GGTGTTAACTTTGCCTCTGG+TGG | 0.510704 | 3.1:-39364452 | MS.gene99826:CDS |
| ATTGCTGGTGTGGCTGCAAT+CGG | 0.514139 | 3.1:-39363085 | MS.gene99826:CDS |
| GATGCTAGAGAGAGGTATGG+TGG | 0.518679 | 3.1:+39364497 | None:intergenic |
| ATTCAGAATCCAACTTCTCA+TGG | 0.531711 | 3.1:-39362893 | MS.gene99826:intron |
| ACAACAGTTTGTCGAATCCA+TGG | 0.541949 | 3.1:-39363449 | MS.gene99826:CDS |
| TTGTTCTTAAGCCTCAATGT+AGG | 0.542501 | 3.1:+39363055 | None:intergenic |
| CTTTGATTACTTCAATTCGA+AGG | 0.543505 | 3.1:-39363494 | MS.gene99826:CDS |
| TGGATTCGACAAACTGTTGT+GGG | 0.544904 | 3.1:+39363452 | None:intergenic |
| AAAGTTAACACCACTCAAGA+AGG | 0.556148 | 3.1:+39364463 | None:intergenic |
| ATGTTTGCACTTGGTAGACA+TGG | 0.557549 | 3.1:+39362746 | None:intergenic |
| AATACATTTAACAAAGCAAG+TGG | 0.559176 | 3.1:-39363626 | MS.gene99826:CDS |
| GAGAAGTTGGATTCTGAATG+AGG | 0.559748 | 3.1:+39362897 | None:intergenic |
| ATGGATTCGACAAACTGTTG+TGG | 0.566468 | 3.1:+39363451 | None:intergenic |
| TTCACTCCATGTTAAAGGAA+TGG | 0.568239 | 3.1:-39362979 | MS.gene99826:CDS |
| TCGGATGTTGTCCTACATTG+AGG | 0.568542 | 3.1:-39363066 | MS.gene99826:CDS |
| TTGGTACAAATGTTTGCACT+TGG | 0.586465 | 3.1:+39362737 | None:intergenic |
| ATTCCTTTAACATGGAGTGA+AGG | 0.588758 | 3.1:+39362981 | None:intergenic |
| ATGCGAGTTACTGCCTCAGT+AGG | 0.597608 | 3.1:+39362680 | None:intergenic |
| GGTATGGTGGTGAAGTTGCA+AGG | 0.604428 | 3.1:+39364510 | None:intergenic |
| GATTATACAAAAGTGGTGCA+AGG | 0.617902 | 3.1:-39363117 | MS.gene99826:CDS |
| GAGATTCGAGATTGCTGGTG+TGG | 0.621106 | 3.1:-39363095 | MS.gene99826:CDS |
| CGTTAGAAGATGCTAGAGAG+AGG | 0.627849 | 3.1:+39364489 | None:intergenic |
| TCTAACGTATCCTTCTTGAG+TGG | 0.631948 | 3.1:-39364473 | MS.gene99826:CDS |
| GAGTTACTGCCTCAGTAGGA+TGG | 0.632248 | 3.1:+39362684 | None:intergenic |
| ATTCTGAATGAGGTCTTGGA+TGG | 0.637285 | 3.1:+39362907 | None:intergenic |
| GATGTGAAAGCTGCATGTTG+TGG | 0.645421 | 3.1:-39362794 | MS.gene99826:CDS |
| AAATATTCCAGCACCACCAG+AGG | 0.649840 | 3.1:+39364439 | None:intergenic |
| ACAGGAGATGTGTATTGTGA+TGG | 0.654472 | 3.1:+39362632 | None:intergenic |
| CAAAGAAGATGGATTCTGAG+AGG | 0.677477 | 3.1:+39363539 | None:intergenic |
| GGATTCAGTCCATCCTACTG+AGG | 0.681661 | 3.1:-39362693 | MS.gene99826:CDS |
| GGATTCGACAAACTGTTGTG+GGG | 0.742366 | 3.1:+39363453 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATCTTTGTTAAAAGTT+CGG | + | chr3.1:39363155-39363174 | None:intergenic | 15.0% |
| !! | TTTCCAAATAAAATATACAA+TGG | - | chr3.1:39363182-39363201 | MS.gene99826:intron | 15.0% |
| !! | ATAACAACTATTACTACATT+TGG | + | chr3.1:39363416-39363435 | None:intergenic | 20.0% |
| !! | GTATTTAACTGACAATAAAT+TGG | + | chr3.1:39364124-39364143 | None:intergenic | 20.0% |
| !! | TAACAACTATTACTACATTT+GGG | + | chr3.1:39363415-39363434 | None:intergenic | 20.0% |
| !!! | GAACCATTGTATATTTTATT+TGG | + | chr3.1:39363188-39363207 | None:intergenic | 20.0% |
| !!! | TATAAAGATTCTAGAGATTT+CGG | + | chr3.1:39363903-39363922 | None:intergenic | 20.0% |
| !!! | TTTAATCACTTTGACTTTAA+GGG | + | chr3.1:39363439-39363458 | None:intergenic | 20.0% |
| !!! | TTTTTTATGTCCATTTTTTC+AGG | - | chr3.1:39364309-39364328 | MS.gene99826:intron | 20.0% |
| ! | AAAATGACCCAATTATATCT+GGG | - | chr3.1:39363229-39363248 | MS.gene99826:intron | 25.0% |
| ! | AAGTCAAAGTGATTAAAGAA+TGG | - | chr3.1:39363442-39363461 | MS.gene99826:CDS | 25.0% |
| ! | AATACATTTAACAAAGCAAG+TGG | - | chr3.1:39363507-39363526 | MS.gene99826:CDS | 25.0% |
| ! | ATCACATACTCATACTTTAT+TGG | - | chr3.1:39364267-39364286 | MS.gene99826:intron | 25.0% |
| ! | ATCTACAAATCCTGAAAAAA+TGG | + | chr3.1:39364322-39364341 | None:intergenic | 25.0% |
| ! | ATTGTCGATAGACTTTATAA+TGG | - | chr3.1:39364477-39364496 | MS.gene99826:CDS | 25.0% |
| ! | TAAAATGACCCAATTATATC+TGG | - | chr3.1:39363228-39363247 | MS.gene99826:intron | 25.0% |
| !! | AATGTGACACATAGTATTTT+TGG | + | chr3.1:39362980-39362999 | None:intergenic | 25.0% |
| !! | CTTTAATCACTTTGACTTTA+AGG | + | chr3.1:39363440-39363459 | None:intergenic | 25.0% |
| !! | TATTTAGAACTATGCTTAGA+AGG | - | chr3.1:39363934-39363953 | MS.gene99826:intron | 25.0% |
| !! | TATTTGCATCCATTTTCATT+TGG | - | chr3.1:39363972-39363991 | MS.gene99826:intron | 25.0% |
| !!! | TAAGCATAGTTCTAAATATG+CGG | + | chr3.1:39363932-39363951 | None:intergenic | 25.0% |
| AAATACTATGTGTCACATTG+TGG | - | chr3.1:39362981-39363000 | MS.gene99826:CDS | 30.0% | |
| ACAACATTGCAACTCAATTA+CGG | + | chr3.1:39363878-39363897 | None:intergenic | 30.0% | |
| ACTGAAAAAACAACCCATAT+CGG | - | chr3.1:39363112-39363131 | MS.gene99826:CDS | 30.0% | |
| AGAACTGCACTTACATAATT+TGG | + | chr3.1:39362732-39362751 | None:intergenic | 30.0% | |
| CTTTGATTACTTCAATTCGA+AGG | - | chr3.1:39363639-39363658 | MS.gene99826:intron | 30.0% | |
| GTTACCATACCAAATGAAAA+TGG | + | chr3.1:39363984-39364003 | None:intergenic | 30.0% | |
| TACAAAAAATGTCACCAGTT+GGG | + | chr3.1:39363478-39363497 | None:intergenic | 30.0% | |
| TACAAACACAAAAGCAAAGT+TGG | + | chr3.1:39362779-39362798 | None:intergenic | 30.0% | |
| TATTTCAACATGGCCAAAAA+GGG | - | chr3.1:39362835-39362854 | MS.gene99826:intron | 30.0% | |
| TCACAGAGATTATACAAAAG+TGG | - | chr3.1:39364009-39364028 | MS.gene99826:intron | 30.0% | |
| TGTGTTTGTACGATAAACAT+GGG | - | chr3.1:39362789-39362808 | MS.gene99826:CDS | 30.0% | |
| TTGTGTTTGTACGATAAACA+TGG | - | chr3.1:39362788-39362807 | MS.gene99826:CDS | 30.0% | |
| TTTAACTGGACCAAAATTGA+CGG | - | chr3.1:39363285-39363304 | MS.gene99826:intron | 30.0% | |
| ! | ATAGACAAGACCATATCTTT+TGG | - | chr3.1:39364418-39364437 | MS.gene99826:CDS | 30.0% |
| ! | TAGACAAGACCATATCTTTT+GGG | - | chr3.1:39364419-39364438 | MS.gene99826:CDS | 30.0% |
| ! | TAGACCACAAAATTGCATTT+TGG | + | chr3.1:39362817-39362836 | None:intergenic | 30.0% |
| ! | TTTTGTGGTCTATTTCAACA+TGG | - | chr3.1:39362825-39362844 | MS.gene99826:intron | 30.0% |
| !! | AAAGATATGGTCTTGTCTAT+TGG | + | chr3.1:39364418-39364437 | None:intergenic | 30.0% |
| !! | ACTTTCATTTTTGTCTCAAG+TGG | + | chr3.1:39363352-39363371 | None:intergenic | 30.0% |
| !! | ATGGTTCTAAATTGTGTTTG+CGG | - | chr3.1:39363794-39363813 | MS.gene99826:intron | 30.0% |
| !!! | AATTGGGTCATTTTAACTCT+GGG | + | chr3.1:39363223-39363242 | None:intergenic | 30.0% |
| !!! | TAATTGGGTCATTTTAACTC+TGG | + | chr3.1:39363224-39363243 | None:intergenic | 30.0% |
| !!! | TATGGGTTGTTTTTTCAGTT+TGG | + | chr3.1:39363111-39363130 | None:intergenic | 30.0% |
| AAACCTTCACTCCATGTTAA+AGG | - | chr3.1:39364149-39364168 | MS.gene99826:intron | 35.0% | |
| AAAGTTAACACCACTCAAGA+AGG | + | chr3.1:39362673-39362692 | None:intergenic | 35.0% | |
| AACCACTTGTGTGATATTTG+TGG | - | chr3.1:39362858-39362877 | MS.gene99826:intron | 35.0% | |
| ACTCTATATGTATACGAGCA+TGG | - | chr3.1:39363775-39363794 | MS.gene99826:intron | 35.0% | |
| ACTTGTGTGATATTTGTGGT+GGG | - | chr3.1:39362862-39362881 | MS.gene99826:intron | 35.0% | |
| AGTAGCTCTTTCATACTAAC+AGG | + | chr3.1:39364522-39364541 | None:intergenic | 35.0% | |
| ATCGAACTAGCTCATTTAAC+TGG | - | chr3.1:39363271-39363290 | MS.gene99826:intron | 35.0% | |
| ATGGAAAAATTTCTCCCAAC+TGG | - | chr3.1:39363461-39363480 | MS.gene99826:CDS | 35.0% | |
| ATTCAGAATCCAACTTCTCA+TGG | - | chr3.1:39364240-39364259 | MS.gene99826:intron | 35.0% | |
| ATTCCTTTAACATGGAGTGA+AGG | + | chr3.1:39364155-39364174 | None:intergenic | 35.0% | |
| CAATTGCCATTCCTTTAACA+TGG | + | chr3.1:39364163-39364182 | None:intergenic | 35.0% | |
| CACTACAAACCTTGATATTG+CGG | - | chr3.1:39363832-39363851 | MS.gene99826:intron | 35.0% | |
| CATGTTAAAGGAATGGCAAT+TGG | - | chr3.1:39364161-39364180 | MS.gene99826:intron | 35.0% | |
| CTACAAAAAATGTCACCAGT+TGG | + | chr3.1:39363479-39363498 | None:intergenic | 35.0% | |
| CTATTTCAACATGGCCAAAA+AGG | - | chr3.1:39362834-39362853 | MS.gene99826:intron | 35.0% | |
| GAAGAATCGACAAAGCAAAT+AGG | - | chr3.1:39363550-39363569 | MS.gene99826:CDS | 35.0% | |
| GATTATACAAAAGTGGTGCA+AGG | - | chr3.1:39364016-39364035 | MS.gene99826:intron | 35.0% | |
| GTGATAATACCATGAGAAGT+TGG | + | chr3.1:39364252-39364271 | None:intergenic | 35.0% | |
| GTGTTTGTACGATAAACATG+GGG | - | chr3.1:39362790-39362809 | MS.gene99826:CDS | 35.0% | |
| GTTAAATGAGCTAGTTCGAT+TGG | + | chr3.1:39363271-39363290 | None:intergenic | 35.0% | |
| TTCACTCCATGTTAAAGGAA+TGG | - | chr3.1:39364154-39364173 | MS.gene99826:intron | 35.0% | |
| TTCGTAGCCCAGATATAATT+GGG | + | chr3.1:39363239-39363258 | None:intergenic | 35.0% | |
| TTGGTACAAATGTTTGCACT+TGG | + | chr3.1:39364399-39364418 | None:intergenic | 35.0% | |
| TTGTTCTTAAGCCTCAATGT+AGG | + | chr3.1:39364081-39364100 | None:intergenic | 35.0% | |
| TTTCGTAGCCCAGATATAAT+TGG | + | chr3.1:39363240-39363259 | None:intergenic | 35.0% | |
| ! | GCATCCATTTTCATTTGGTA+TGG | - | chr3.1:39363977-39363996 | MS.gene99826:intron | 35.0% |
| ! | GTCATTAAAAGTGCAACTAC+AGG | - | chr3.1:39363711-39363730 | MS.gene99826:intron | 35.0% |
| ! | TCCATCTTCTTTGTTGTGAT+TGG | - | chr3.1:39363604-39363623 | MS.gene99826:CDS | 35.0% |
| ! | TTCATTTTGCCGCAATATCA+AGG | + | chr3.1:39363844-39363863 | None:intergenic | 35.0% |
| AAAAGCCACATGTCACATTG+CGG | + | chr3.1:39362910-39362929 | None:intergenic | 40.0% | |
| AAAATTGACGGCTCTACTTG+CGG | - | chr3.1:39363297-39363316 | MS.gene99826:intron | 40.0% | |
| AAAGCTGCATGTTGTGGAAT+TGG | - | chr3.1:39364345-39364364 | MS.gene99826:intron | 40.0% | |
| ACAACAGTTTGTCGAATCCA+TGG | - | chr3.1:39363684-39363703 | MS.gene99826:intron | 40.0% | |
| ACAGGAGATGTGTATTGTGA+TGG | + | chr3.1:39364504-39364523 | None:intergenic | 40.0% | |
| ACTATGTGTCACATTGTGGT+TGG | - | chr3.1:39362985-39363004 | MS.gene99826:CDS | 40.0% | |
| ATGGATTCGACAAACTGTTG+TGG | + | chr3.1:39363685-39363704 | None:intergenic | 40.0% | |
| ATGTTTGCACTTGGTAGACA+TGG | + | chr3.1:39364390-39364409 | None:intergenic | 40.0% | |
| ATTCTGAATGAGGTCTTGGA+TGG | + | chr3.1:39364229-39364248 | None:intergenic | 40.0% | |
| CACCACAAATATCACACAAG+TGG | + | chr3.1:39362863-39362882 | None:intergenic | 40.0% | |
| CACTTGTGTGATATTTGTGG+TGG | - | chr3.1:39362861-39362880 | MS.gene99826:intron | 40.0% | |
| GAGAAGTTGGATTCTGAATG+AGG | + | chr3.1:39364239-39364258 | None:intergenic | 40.0% | |
| GCAACTACAGGTAAACACAA+TGG | - | chr3.1:39363723-39363742 | MS.gene99826:intron | 40.0% | |
| GCCAATCACAACAAAGAAGA+TGG | + | chr3.1:39363608-39363627 | None:intergenic | 40.0% | |
| GGACTGAATCCCAAAAGATA+TGG | + | chr3.1:39364431-39364450 | None:intergenic | 40.0% | |
| TAACTCTGGGTCAATCTGAA+CGG | + | chr3.1:39363210-39363229 | None:intergenic | 40.0% | |
| TACTTGCGGACAATGAAGTA+GGG | - | chr3.1:39363311-39363330 | MS.gene99826:intron | 40.0% | |
| TCTAACGTATCCTTCTTGAG+TGG | - | chr3.1:39362660-39362679 | MS.gene99826:CDS | 40.0% | |
| TGGATTCGACAAACTGTTGT+GGG | + | chr3.1:39363684-39363703 | None:intergenic | 40.0% | |
| TTGGATTCTGAATGAGGTCT+TGG | + | chr3.1:39364233-39364252 | None:intergenic | 40.0% | |
| ! | CAAAGAAGATGGATTCTGAG+AGG | + | chr3.1:39363597-39363616 | None:intergenic | 40.0% |
| ! | CACTTTTAATGACGAAGCCA+TGG | + | chr3.1:39363704-39363723 | None:intergenic | 40.0% |
| ! | GGGTCCAAAATGCAATTTTG+TGG | - | chr3.1:39362810-39362829 | MS.gene99826:intron | 40.0% |
| ! | GGTGGTGCTGGAATATTTAA+AGG | - | chr3.1:39362699-39362718 | MS.gene99826:CDS | 40.0% |
| AAATATTCCAGCACCACCAG+AGG | + | chr3.1:39362697-39362716 | None:intergenic | 45.0% | |
| AATGAGCTAGTTCGATTGGC+CGG | + | chr3.1:39363267-39363286 | None:intergenic | 45.0% | |
| ATCTGGGCTACGAAACATAC+CGG | - | chr3.1:39363245-39363264 | MS.gene99826:intron | 45.0% | |
| CACTTGTGTGACATTGTGGT+GGG | + | chr3.1:39363029-39363048 | None:intergenic | 45.0% | |
| CGTTAGAAGATGCTAGAGAG+AGG | + | chr3.1:39362647-39362666 | None:intergenic | 45.0% | |
| CTACTTGCGGACAATGAAGT+AGG | - | chr3.1:39363310-39363329 | MS.gene99826:intron | 45.0% | |
| GAACCACTTGTGTGACATTG+TGG | + | chr3.1:39363033-39363052 | None:intergenic | 45.0% | |
| GAAGATGCTAGAGAGAGGTA+TGG | + | chr3.1:39362642-39362661 | None:intergenic | 45.0% | |
| GACTCAGTCTAAGCCGATAT+GGG | + | chr3.1:39363128-39363147 | None:intergenic | 45.0% | |
| GATGTGAAAGCTGCATGTTG+TGG | - | chr3.1:39364339-39364358 | MS.gene99826:intron | 45.0% | |
| GGATTCGACAAACTGTTGTG+GGG | + | chr3.1:39363683-39363702 | None:intergenic | 45.0% | |
| TCGGATGTTGTCCTACATTG+AGG | - | chr3.1:39364067-39364086 | MS.gene99826:intron | 45.0% | |
| TGACTCAGTCTAAGCCGATA+TGG | + | chr3.1:39363129-39363148 | None:intergenic | 45.0% | |
| ! | AGTGGTGTTAACTTTGCCTC+TGG | - | chr3.1:39362678-39362697 | MS.gene99826:CDS | 45.0% |
| ! | CACACAAGTGGTTCCCTTTT+TGG | + | chr3.1:39362851-39362870 | None:intergenic | 45.0% |
| ! | GCAAGTAGAGCCGTCAATTT+TGG | + | chr3.1:39363298-39363317 | None:intergenic | 45.0% |
| !! | CAGTCCAATGCCTCACTTTT+TGG | + | chr3.1:39363059-39363078 | None:intergenic | 45.0% |
| !!! | TCCAATGCCTCACTTTTTGG+CGG | + | chr3.1:39363056-39363075 | None:intergenic | 45.0% |
| ATGCGAGTTACTGCCTCAGT+AGG | + | chr3.1:39364456-39364475 | None:intergenic | 50.0% | |
| ATTGCTGGTGTGGCTGCAAT+CGG | - | chr3.1:39364048-39364067 | MS.gene99826:intron | 50.0% | |
| CAGTTTGGTCCACTGAACTG+CGG | + | chr3.1:39363096-39363115 | None:intergenic | 50.0% | |
| CCACATGTCACATTGCGGTT+GGG | + | chr3.1:39362905-39362924 | None:intergenic | 50.0% | |
| CCACCACAATGTCACACAAG+TGG | - | chr3.1:39363027-39363046 | MS.gene99826:CDS | 50.0% | |
| CCACTTGTGTGACATTGTGG+TGG | + | chr3.1:39363030-39363049 | None:intergenic | 50.0% | |
| GAGATTCGAGATTGCTGGTG+TGG | - | chr3.1:39364038-39364057 | MS.gene99826:intron | 50.0% | |
| GAGTTACTGCCTCAGTAGGA+TGG | + | chr3.1:39364452-39364471 | None:intergenic | 50.0% | |
| GCAAGGAGATTCGAGATTGC+TGG | - | chr3.1:39364033-39364052 | MS.gene99826:intron | 50.0% | |
| GGATTCAGTCCATCCTACTG+AGG | - | chr3.1:39364440-39364459 | MS.gene99826:CDS | 50.0% | |
| GGTGTTAACTTTGCCTCTGG+TGG | - | chr3.1:39362681-39362700 | MS.gene99826:CDS | 50.0% | |
| ! | GATGCTAGAGAGAGGTATGG+TGG | + | chr3.1:39362639-39362658 | None:intergenic | 50.0% |
| ! | GGTATGGTGGTGAAGTTGCA+AGG | + | chr3.1:39362626-39362645 | None:intergenic | 50.0% |
| !!! | CCAATGCCTCACTTTTTGGC+GGG | + | chr3.1:39363055-39363074 | None:intergenic | 50.0% |
| CCCAACCGCAATGTGACATG+TGG | - | chr3.1:39362902-39362921 | MS.gene99826:CDS | 55.0% | |
| CCCGCCAAAAAGTGAGGCAT+TGG | - | chr3.1:39363052-39363071 | MS.gene99826:CDS | 55.0% | |
| GCCACATGTCACATTGCGGT+TGG | + | chr3.1:39362906-39362925 | None:intergenic | 55.0% | |
| GTGGTTCCCGCCAAAAAGTG+AGG | - | chr3.1:39363046-39363065 | MS.gene99826:CDS | 55.0% | |
| TTTGGTCCACTGAACTGCGG+CGG | + | chr3.1:39363093-39363112 | None:intergenic | 55.0% | |
| ! | AACTTTGCCTCTGGTGGTGC+TGG | - | chr3.1:39362687-39362706 | MS.gene99826:CDS | 55.0% |
| CCACTGAACTGCGGCGGCTC+AGG | + | chr3.1:39363087-39363106 | None:intergenic | 70.0% | |
| CCTGAGCCGCCGCAGTTCAG+TGG | - | chr3.1:39363084-39363103 | MS.gene99826:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 39362610 | 39364545 | 39362610 | ID=MS.gene99826 |
| chr3.1 | mRNA | 39362610 | 39364545 | 39362610 | ID=MS.gene99826.t1;Parent=MS.gene99826 |
| chr3.1 | exon | 39364418 | 39364545 | 39364418 | ID=MS.gene99826.t1.exon1;Parent=MS.gene99826.t1 |
| chr3.1 | CDS | 39364418 | 39364545 | 39364418 | ID=cds.MS.gene99826.t1;Parent=MS.gene99826.t1 |
| chr3.1 | exon | 39363423 | 39363656 | 39363423 | ID=MS.gene99826.t1.exon2;Parent=MS.gene99826.t1 |
| chr3.1 | CDS | 39363423 | 39363656 | 39363423 | ID=cds.MS.gene99826.t1;Parent=MS.gene99826.t1 |
| chr3.1 | exon | 39362894 | 39363140 | 39362894 | ID=MS.gene99826.t1.exon3;Parent=MS.gene99826.t1 |
| chr3.1 | CDS | 39362894 | 39363140 | 39362894 | ID=cds.MS.gene99826.t1;Parent=MS.gene99826.t1 |
| chr3.1 | exon | 39362610 | 39362824 | 39362610 | ID=MS.gene99826.t1.exon4;Parent=MS.gene99826.t1 |
| chr3.1 | CDS | 39362610 | 39362824 | 39362610 | ID=cds.MS.gene99826.t1;Parent=MS.gene99826.t1 |
| Gene Sequence |
| Protein sequence |
