Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023295.01.T01 | PNX96778.1 | 89.888 | 89 | 9 | 0 | 3 | 91 | 1 | 89 | 3.47E-47 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023295.01.T01 | A0A2K3N151 | 89.888 | 89 | 9 | 0 | 3 | 91 | 1 | 89 | 1.66e-47 | 155 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047910.01 | MsG0480023295.01 | 0.813217 | 2.861818e-51 | 1.857581e-48 |
| MsG0080048528.01 | MsG0480023295.01 | 0.800103 | 1.685848e-48 | 7.783341e-46 |
| MsG0080048929.01 | MsG0480023295.01 | 0.809791 | 1.588670e-50 | 9.415753e-48 |
| MsG0080049129.01 | MsG0480023295.01 | 0.836601 | 8.506904e-57 | 1.077226e-53 |
| MsG0180000193.01 | MsG0480023295.01 | 0.805206 | 1.492895e-49 | 7.851290e-47 |
| MsG0180000194.01 | MsG0480023295.01 | 0.802430 | 5.630761e-49 | 2.757767e-46 |
| MsG0180000325.01 | MsG0480023295.01 | 0.808833 | 2.549672e-50 | 1.472968e-47 |
| MsG0180000352.01 | MsG0480023295.01 | 0.812093 | 5.042673e-51 | 3.176417e-48 |
| MsG0180000638.01 | MsG0480023295.01 | 0.804251 | 2.362498e-49 | 1.212209e-46 |
| MsG0180000793.01 | MsG0480023295.01 | 0.812016 | 5.240930e-51 | 3.294374e-48 |
| MsG0180001873.01 | MsG0480023295.01 | 0.805908 | 1.063784e-49 | 5.696318e-47 |
| MsG0180002982.01 | MsG0480023295.01 | 0.803330 | 3.671160e-49 | 1.839639e-46 |
| MsG0180003453.01 | MsG0480023295.01 | 0.812853 | 3.439284e-51 | 2.210664e-48 |
| MsG0180003933.01 | MsG0480023295.01 | 0.854888 | 9.117841e-62 | 2.066738e-58 |
| MsG0180004292.01 | MsG0480023295.01 | 0.800761 | 1.238142e-48 | 5.812441e-46 |
| MsG0180004302.01 | MsG0480023295.01 | 0.810859 | 9.348146e-51 | 5.698873e-48 |
| MsG0180005283.01 | MsG0480023295.01 | 0.823428 | 1.392638e-53 | 1.198686e-50 |
| MsG0180005760.01 | MsG0480023295.01 | 0.810500 | 1.117646e-50 | 6.748001e-48 |
| MsG0180005806.01 | MsG0480023295.01 | 0.800067 | 1.714737e-48 | 7.909518e-46 |
| MsG0180005879.01 | MsG0480023295.01 | 0.817548 | 3.115476e-52 | 2.275684e-49 |
| MsG0180006223.01 | MsG0480023295.01 | 0.812549 | 4.009859e-51 | 2.557086e-48 |
| MsG0280011067.01 | MsG0480023295.01 | 0.802137 | 6.471133e-49 | 3.145605e-46 |
| MsG0280011162.01 | MsG0480023295.01 | 0.801582 | 8.411360e-49 | 4.031484e-46 |
| MsG0280011276.01 | MsG0480023295.01 | 0.806383 | 8.449802e-50 | 4.579761e-47 |
| MsG0280011411.01 | MsG0480023295.01 | 0.810010 | 1.425802e-50 | 8.499035e-48 |
| MsG0380011825.01 | MsG0480023295.01 | 0.807205 | 5.663792e-50 | 3.135580e-47 |
| MsG0380013111.01 | MsG0480023295.01 | 0.805193 | 1.502361e-49 | 7.898328e-47 |
| MsG0380013530.01 | MsG0480023295.01 | 0.820650 | 6.131878e-53 | 4.880008e-50 |
| MsG0380014053.01 | MsG0480023295.01 | 0.826360 | 2.830776e-54 | 2.648966e-51 |
| MsG0480019485.01 | MsG0480023295.01 | 0.823687 | 1.210982e-53 | 1.050210e-50 |
| MsG0480019592.01 | MsG0480023295.01 | 0.804583 | 2.014699e-49 | 1.042679e-46 |
| MsG0480019641.01 | MsG0480023295.01 | 0.809197 | 2.131237e-50 | 1.243341e-47 |
| MsG0480019974.01 | MsG0480023295.01 | 0.812034 | 5.194758e-51 | 3.266789e-48 |
| MsG0480020122.01 | MsG0480023295.01 | 0.806962 | 6.375582e-50 | 3.507421e-47 |
| MsG0480021303.01 | MsG0480023295.01 | 0.811152 | 8.077414e-51 | 4.962324e-48 |
| MsG0480021308.01 | MsG0480023295.01 | 0.815466 | 9.111226e-52 | 6.286990e-49 |
| MsG0480021317.01 | MsG0480023295.01 | 0.803566 | 3.280079e-49 | 1.653842e-46 |
| MsG0480021521.01 | MsG0480023295.01 | 0.806657 | 7.394662e-50 | 4.035956e-47 |
| MsG0480022297.01 | MsG0480023295.01 | 0.812660 | 3.792061e-51 | 2.425135e-48 |
| MsG0480022665.01 | MsG0480023295.01 | 0.810327 | 1.217996e-50 | 7.320244e-48 |
| MsG0480022804.01 | MsG0480023295.01 | 0.814517 | 1.479668e-51 | 9.950130e-49 |
| MsG0480023166.01 | MsG0480023295.01 | 0.803967 | 2.706898e-49 | 1.378944e-46 |
| MsG0480023295.01 | MsG0480023351.01 | 0.807621 | 4.621482e-50 | 2.586353e-47 |
| MsG0480023295.01 | MsG0480023422.01 | 0.815674 | 8.189844e-52 | 5.683343e-49 |
| MsG0480023295.01 | MsG0480023483.01 | 0.830749 | 2.464337e-55 | 2.620248e-52 |
| MsG0480023295.01 | MsG0480023502.01 | 0.819330 | 1.229360e-52 | 9.430968e-50 |
| MsG0480023295.01 | MsG0480023850.01 | 0.818561 | 1.837888e-52 | 1.380392e-49 |
| MsG0480023295.01 | MsG0480023993.01 | 0.810868 | 9.307390e-51 | 5.675340e-48 |
| MsG0480023295.01 | MsG0580024679.01 | 0.802573 | 5.262345e-49 | 2.586566e-46 |
| MsG0480023295.01 | MsG0580024944.01 | 0.809401 | 1.926753e-50 | 1.130179e-47 |
| MsG0480023295.01 | MsG0580024982.01 | 0.817095 | 3.938058e-52 | 2.841049e-49 |
| MsG0480023295.01 | MsG0580028982.01 | 0.801498 | 8.751594e-49 | 4.185891e-46 |
| MsG0480023295.01 | MsG0580029918.01 | 0.801648 | 8.153975e-49 | 3.914611e-46 |
| MsG0480023295.01 | MsG0680030290.01 | 0.828769 | 7.478338e-55 | 7.504395e-52 |
| MsG0480023295.01 | MsG0680032055.01 | 0.813256 | 2.805973e-51 | 1.823277e-48 |
| MsG0480023295.01 | MsG0680033901.01 | 0.823123 | 1.640868e-53 | 1.400399e-50 |
| MsG0480023295.01 | MsG0680033902.01 | 0.834604 | 2.723039e-56 | 3.247629e-53 |
| MsG0480023295.01 | MsG0780036909.01 | 0.803764 | 2.982630e-49 | 1.511486e-46 |
| MsG0480023295.01 | MsG0780037184.01 | 0.808536 | 2.951313e-50 | 1.691810e-47 |
| MsG0480023295.01 | MsG0780037436.01 | 0.807052 | 6.102558e-50 | 3.365056e-47 |
| MsG0480023295.01 | MsG0780038571.01 | 0.819116 | 1.374862e-52 | 1.048606e-49 |
| MsG0480023295.01 | MsG0780038653.01 | 0.804911 | 1.720602e-49 | 8.981338e-47 |
| MsG0480023295.01 | MsG0780039449.01 | 0.813022 | 3.158140e-51 | 2.039206e-48 |
| MsG0480023295.01 | MsG0780039859.01 | 0.815997 | 6.939255e-52 | 4.858115e-49 |
| MsG0480023295.01 | MsG0780039860.01 | 0.811316 | 7.439723e-51 | 4.590265e-48 |
| MsG0480023295.01 | MsG0780039988.01 | 0.800303 | 1.535365e-48 | 7.124873e-46 |
| MsG0480023295.01 | MsG0780040567.01 | 0.805583 | 1.244563e-49 | 6.609040e-47 |
| MsG0480023295.01 | MsG0780040644.01 | 0.841655 | 4.166060e-58 | 6.162547e-55 |
| MsG0480023295.01 | MsG0780040884.01 | 0.801484 | 8.808995e-49 | 4.211796e-46 |
| MsG0480023295.01 | MsG0780041249.01 | 0.834666 | 2.626398e-56 | 3.137902e-53 |
| MsG0480023295.01 | MsG0780041289.01 | 0.829080 | 6.286226e-55 | 6.366175e-52 |
| MsG0480023295.01 | MsG0880042043.01 | 0.806048 | 9.939262e-50 | 5.341468e-47 |
| MsG0480023295.01 | MsG0880042921.01 | 0.812344 | 4.444299e-51 | 2.818774e-48 |
| MsG0480023295.01 | MsG0880043032.01 | 0.832499 | 9.132002e-56 | 1.022555e-52 |
| MsG0480023295.01 | MsG0880043075.01 | 0.826048 | 3.359912e-54 | 3.116185e-51 |
| MsG0480023295.01 | MsG0880044312.01 | 0.813996 | 1.929048e-51 | 1.278910e-48 |
| MsG0480023295.01 | MsG0880044352.01 | 0.820650 | 6.131746e-53 | 4.879913e-50 |
| MsG0480023295.01 | MsG0880044715.01 | 0.804716 | 1.889991e-49 | 9.815380e-47 |
| MsG0480023295.01 | MsG0880045073.01 | 0.820525 | 6.549814e-53 | 5.194885e-50 |
| MsG0480023295.01 | MsG0880045261.01 | 0.845516 | 3.867620e-59 | 6.461359e-56 |
| MsG0480023295.01 | MsG0880045283.01 | 0.808683 | 2.745035e-50 | 1.579561e-47 |
| MsG0480023295.01 | MsG0880045412.01 | 0.810516 | 1.109064e-50 | 6.698900e-48 |
| MsG0480023295.01 | MsG0880046252.01 | 0.817934 | 2.548787e-52 | 1.881569e-49 |
| MsG0480023295.01 | MsG0880046584.01 | 0.801078 | 1.067078e-48 | 5.050083e-46 |
| MsG0480023295.01 | MsG0880047234.01 | 0.803361 | 3.616443e-49 | 1.813637e-46 |
| MsG0480023295.01 | MsG0880047392.01 | 0.818997 | 1.463399e-52 | 1.112572e-49 |
| MsG0480023295.01 | MsG0880047661.01 | 0.811471 | 6.887591e-51 | 4.267185e-48 |
| MsG0480023295.01 | MsG0880047669.01 | 0.820419 | 6.929315e-53 | 5.480178e-50 |
| MsG0480023295.01 | MsG0880047727.01 | 0.824814 | 6.583542e-54 | 5.895420e-51 |
| MsG0380015974.01 | MsG0480023295.01 | 0.806680 | 7.312217e-50 | 3.993379e-47 |
| MsG0380016354.01 | MsG0480023295.01 | 0.802098 | 6.591898e-49 | 3.201127e-46 |
| MsG0380016452.01 | MsG0480023295.01 | 0.804097 | 2.544463e-49 | 1.300482e-46 |
| MsG0380016478.01 | MsG0480023295.01 | 0.817842 | 2.673605e-52 | 1.968768e-49 |
| MsG0380016623.01 | MsG0480023295.01 | 0.824524 | 7.705522e-54 | 6.842231e-51 |
| MsG0380017472.01 | MsG0480023295.01 | 0.804860 | 1.763891e-49 | 9.194783e-47 |
| MsG0380017474.01 | MsG0480023295.01 | 0.803761 | 2.986906e-49 | 1.513528e-46 |
| MsG0380017647.01 | MsG0480023295.01 | 0.817690 | 2.893586e-52 | 2.121838e-49 |
| MsG0380017651.01 | MsG0480023295.01 | 0.837407 | 5.294940e-57 | 6.870707e-54 |
| MsG0380017976.01 | MsG0480023295.01 | 0.816830 | 4.516205e-52 | 3.234597e-49 |
| MsG0380018066.01 | MsG0480023295.01 | 0.814124 | 1.807171e-51 | 1.202309e-48 |
| MsG0480018089.01 | MsG0480023295.01 | 0.818626 | 1.777015e-52 | 1.337012e-49 |
| MsG0480018108.01 | MsG0480023295.01 | 0.815141 | 1.076398e-51 | 7.360489e-49 |
| MsG0480018323.01 | MsG0480023295.01 | 0.823332 | 1.466248e-53 | 1.258655e-50 |
| MsG0280007628.01 | MsG0480023295.01 | 0.804285 | 2.324204e-49 | 1.193670e-46 |
| MsG0280008227.01 | MsG0480023295.01 | 0.828367 | 9.353782e-55 | 9.277882e-52 |
| MsG0280009751.01 | MsG0480023295.01 | 0.826813 | 2.207336e-54 | 2.092416e-51 |
| MsG0280010016.01 | MsG0480023295.01 | 0.810042 | 1.402835e-50 | 8.369221e-48 |
| MsG0280010195.01 | MsG0480023295.01 | 0.816447 | 5.505119e-52 | 3.901469e-49 |
| MsG0280010496.01 | MsG0480023295.01 | 0.836761 | 7.744626e-57 | 9.855324e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023295.01.T01 | MTR_8g089995 | 93.258 | 89 | 6 | 0 | 3 | 91 | 202 | 290 | 6.10e-51 | 161 |
| MsG0480023295.01.T01 | MTR_3g086990 | 71.429 | 70 | 20 | 0 | 3 | 72 | 195 | 264 | 2.15e-26 | 97.8 |
| MsG0480023295.01.T01 | MTR_8g089995 | 97.297 | 37 | 1 | 0 | 3 | 39 | 202 | 238 | 5.02e-16 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023295.01.T01 | AT5G65250 | 77.586 | 58 | 13 | 0 | 3 | 60 | 214 | 271 | 3.05e-22 | 87.8 |
Find 49 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCATTTACTTTCATTTC+AGG | 0.176402 | 4:+83437877 | MsG0480023295.01.T01:three_prime_UTR |
| CTGGTTCTGTGGTAAATTTC+GGG | 0.222924 | 4:+83437830 | MsG0480023295.01.T01:three_prime_UTR |
| TTTAACCCAAGCTTCAAATT+TGG | 0.231116 | 4:-83437576 | None:intergenic |
| AGCCCTGCAATCAGACATTT+TGG | 0.237492 | 4:+83436959 | MsG0480023295.01.T01:CDS |
| CCGTGTTCTTCACTAGTTTC+AGG | 0.242419 | 4:-83437496 | None:intergenic |
| TTTATGTGCCAATAAAATTC+TGG | 0.256690 | 4:-83437702 | None:intergenic |
| TCTGGTTCTGTGGTAAATTT+CGG | 0.258448 | 4:+83437829 | MsG0480023295.01.T01:three_prime_UTR |
| GGCTAATGCTCTTGCGGCCT+CGG | 0.289526 | 4:-83436940 | None:intergenic |
| TTCATCCCTCTGTAATTTGA+TGG | 0.314171 | 4:-83437609 | None:intergenic |
| ACTTTGACTTTGTGTGTAGA+TGG | 0.353715 | 4:-83437677 | None:intergenic |
| TAGATTAGTAACTGAGCTAT+TGG | 0.353976 | 4:+83438019 | MsG0480023295.01.T01:three_prime_UTR |
| TCTCCAAAATGTCTGATTGC+AGG | 0.356336 | 4:-83436962 | None:intergenic |
| AGATTAGTAACTGAGCTATT+GGG | 0.356741 | 4:+83438020 | MsG0480023295.01.T01:three_prime_UTR |
| GTCCACCAAATTTGAAGCTT+GGG | 0.368340 | 4:+83437571 | MsG0480023295.01.T01:exon |
| TTGAAGCTTGGGTTAAACTA+AGG | 0.401346 | 4:+83437582 | MsG0480023295.01.T01:exon |
| ATGAGATAGGATTGAATTCA+TGG | 0.407376 | 4:+83438059 | MsG0480023295.01.T01:three_prime_UTR |
| TTGAATGAAGACTGCAGCTC+TGG | 0.409148 | 4:+83436905 | None:intergenic |
| CGGGAAACTTGAGGCGTCCT+TGG | 0.418063 | 4:-83437742 | None:intergenic |
| GGTCCACCAAATTTGAAGCT+TGG | 0.435933 | 4:+83437570 | MsG0480023295.01.T01:exon |
| GAATCTCAATGCGGTAAATC+AGG | 0.435977 | 4:+83437546 | MsG0480023295.01.T01:CDS |
| AACCCAAGCTTCAAATTTGG+TGG | 0.451264 | 4:-83437573 | None:intergenic |
| TTGCGAAGGCAGGTAAGCTA+TGG | 0.479688 | 4:+83437464 | MsG0480023295.01.T01:CDS |
| ATTCTTGCAATTGCGAAGGC+AGG | 0.502036 | 4:+83437454 | MsG0480023295.01.T01:CDS |
| TAGGATTGAATTCATGGTGG+TGG | 0.502520 | 4:+83438065 | MsG0480023295.01.T01:three_prime_UTR |
| GGAGAATTGTCTGAACTCTC+TGG | 0.503072 | 4:+83437811 | MsG0480023295.01.T01:three_prime_UTR |
| TTACTCAACGAGTCAATTCA+AGG | 0.519358 | 4:+83437785 | MsG0480023295.01.T01:three_prime_UTR |
| CTCCAAAATGTCTGATTGCA+GGG | 0.525218 | 4:-83436961 | None:intergenic |
| ACTTTCATTTCAGGATTACA+AGG | 0.536487 | 4:+83437886 | MsG0480023295.01.T01:three_prime_UTR |
| AAGTTTCCCGTGGATACAGA+TGG | 0.540326 | 4:+83437755 | MsG0480023295.01.T01:three_prime_UTR |
| GATTAGTAACTGAGCTATTG+GGG | 0.561521 | 4:+83438021 | MsG0480023295.01.T01:three_prime_UTR |
| GGAAAACCATCAAATTACAG+AGG | 0.566530 | 4:+83437603 | MsG0480023295.01.T01:three_prime_UTR |
| GAAAACCATCAAATTACAGA+GGG | 0.582046 | 4:+83437604 | MsG0480023295.01.T01:three_prime_UTR |
| TGCGAAGGCAGGTAAGCTAT+GGG | 0.592521 | 4:+83437465 | MsG0480023295.01.T01:CDS |
| GTCTGAACTCTCTGGTTCTG+TGG | 0.592692 | 4:+83437819 | MsG0480023295.01.T01:three_prime_UTR |
| TCAACGAGTCAATTCAAGGA+GGG | 0.615226 | 4:+83437789 | MsG0480023295.01.T01:three_prime_UTR |
| CAACGAGTCAATTCAAGGAG+GGG | 0.615962 | 4:+83437790 | MsG0480023295.01.T01:three_prime_UTR |
| CTGTATCCACGGGAAACTTG+AGG | 0.617797 | 4:-83437751 | None:intergenic |
| CAGATGAATATACATTGGTG+TGG | 0.620848 | 4:+83437966 | MsG0480023295.01.T01:three_prime_UTR |
| TTGCAGGGCTAATGCTCTTG+CGG | 0.622054 | 4:-83436946 | None:intergenic |
| AGTTTCCCGTGGATACAGAT+GGG | 0.625808 | 4:+83437756 | MsG0480023295.01.T01:three_prime_UTR |
| TCTCATTCTTGCAATTGCGA+AGG | 0.648334 | 4:+83437450 | MsG0480023295.01.T01:CDS |
| TAATGATTACACATTTACCA+AGG | 0.648591 | 4:+83437725 | MsG0480023295.01.T01:three_prime_UTR |
| AGGACGCCTCAAGTTTCCCG+TGG | 0.668545 | 4:+83437745 | MsG0480023295.01.T01:three_prime_UTR |
| TCTCAATGCGGTAAATCAGG+AGG | 0.687985 | 4:+83437549 | MsG0480023295.01.T01:CDS |
| CCTGAAACTAGTGAAGAACA+CGG | 0.696745 | 4:+83437496 | MsG0480023295.01.T01:CDS |
| CTCAACGAGTCAATTCAAGG+AGG | 0.701887 | 4:+83437788 | MsG0480023295.01.T01:three_prime_UTR |
| TCTGGCACAGAAGAATTCCG+AGG | 0.724089 | 4:+83436923 | MsG0480023295.01.T01:CDS |
| CTCAGCTGCGAATCTCAATG+CGG | 0.734213 | 4:+83437537 | MsG0480023295.01.T01:CDS |
| AGATAGGATTGAATTCATGG+TGG | 0.761795 | 4:+83438062 | MsG0480023295.01.T01:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACAGATGAATATACAT+TGG | + | Chr4:83437961-83437980 | MsG0480023295.01.T01:three_prime_UTR | 20.0% |
| !!! | TAAAGGTTAACATTATTTTG+TGG | + | Chr4:83437112-83437131 | MsG0480023295.01.T01:intron | 20.0% |
| ! | AGAGTTTAAGTAACATTGAA+GGG | - | Chr4:83437037-83437056 | None:intergenic | 25.0% |
| ! | TAATGATTACACATTTACCA+AGG | + | Chr4:83437725-83437744 | MsG0480023295.01.T01:three_prime_UTR | 25.0% |
| ! | TGTTCATTTACTTTCATTTC+AGG | + | Chr4:83437877-83437896 | MsG0480023295.01.T01:three_prime_UTR | 25.0% |
| ! | TTTATGTGCCAATAAAATTC+TGG | - | Chr4:83437705-83437724 | None:intergenic | 25.0% |
| !! | TTTTTGTTACAGCAAAACTA+AGG | - | Chr4:83437946-83437965 | None:intergenic | 25.0% |
| !!! | AAGTTTGTTTTGTATGAGAT+AGG | + | Chr4:83438046-83438065 | MsG0480023295.01.T01:three_prime_UTR | 25.0% |
| !!! | AGTTTGTTAGTGAACTTTAA+AGG | + | Chr4:83437095-83437114 | MsG0480023295.01.T01:intron | 25.0% |
| AAACTGGAATACTAGATTCA+TGG | - | Chr4:83437287-83437306 | None:intergenic | 30.0% | |
| ACTTTCATTTCAGGATTACA+AGG | + | Chr4:83437886-83437905 | MsG0480023295.01.T01:three_prime_UTR | 30.0% | |
| AGATTAGTAACTGAGCTATT+GGG | + | Chr4:83438020-83438039 | MsG0480023295.01.T01:three_prime_UTR | 30.0% | |
| ATGAGATAGGATTGAATTCA+TGG | + | Chr4:83438059-83438078 | MsG0480023295.01.T01:three_prime_UTR | 30.0% | |
| CAGAGTTTAAGTAACATTGA+AGG | - | Chr4:83437038-83437057 | None:intergenic | 30.0% | |
| GAAAACCATCAAATTACAGA+GGG | + | Chr4:83437604-83437623 | MsG0480023295.01.T01:three_prime_UTR | 30.0% | |
| TAGATTAGTAACTGAGCTAT+TGG | + | Chr4:83438019-83438038 | MsG0480023295.01.T01:three_prime_UTR | 30.0% | |
| TTTAACCCAAGCTTCAAATT+TGG | - | Chr4:83437579-83437598 | None:intergenic | 30.0% | |
| ! | CAAAGTAGCCAGAATTTTAT+TGG | + | Chr4:83437694-83437713 | MsG0480023295.01.T01:three_prime_UTR | 30.0% |
| !! | CTAGTGTCATTTGATTTCTA+AGG | - | Chr4:83437077-83437096 | None:intergenic | 30.0% |
| AAAATCTCTAGTCTGACGTA+TGG | - | Chr4:83437314-83437333 | None:intergenic | 35.0% | |
| AAATCTCTAGTCTGACGTAT+GGG | - | Chr4:83437313-83437332 | None:intergenic | 35.0% | |
| AGATAGGATTGAATTCATGG+TGG | + | Chr4:83438062-83438081 | MsG0480023295.01.T01:three_prime_UTR | 35.0% | |
| CAGATGAATATACATTGGTG+TGG | + | Chr4:83437966-83437985 | MsG0480023295.01.T01:three_prime_UTR | 35.0% | |
| GATTAGTAACTGAGCTATTG+GGG | + | Chr4:83438021-83438040 | MsG0480023295.01.T01:three_prime_UTR | 35.0% | |
| GGAAAACCATCAAATTACAG+AGG | + | Chr4:83437603-83437622 | MsG0480023295.01.T01:three_prime_UTR | 35.0% | |
| TTACTCAACGAGTCAATTCA+AGG | + | Chr4:83437785-83437804 | MsG0480023295.01.T01:three_prime_UTR | 35.0% | |
| TTCATCCCTCTGTAATTTGA+TGG | - | Chr4:83437612-83437631 | None:intergenic | 35.0% | |
| TTGAAGCTTGGGTTAAACTA+AGG | + | Chr4:83437582-83437601 | MsG0480023295.01.T01:exon | 35.0% | |
| ! | ACTTTGACTTTGTGTGTAGA+TGG | - | Chr4:83437680-83437699 | None:intergenic | 35.0% |
| !! | TCTGGTTCTGTGGTAAATTT+CGG | + | Chr4:83437829-83437848 | MsG0480023295.01.T01:three_prime_UTR | 35.0% |
| !!! | TTTTTTCCCATCTGTATCCA+CGG | - | Chr4:83437765-83437784 | None:intergenic | 35.0% |
| AACCCAAGCTTCAAATTTGG+TGG | - | Chr4:83437576-83437595 | None:intergenic | 40.0% | |
| CCTGAAACTAGTGAAGAACA+CGG | + | Chr4:83437496-83437515 | MsG0480023295.01.T01:CDS | 40.0% | |
| CTCCAAAATGTCTGATTGCA+GGG | - | Chr4:83436964-83436983 | None:intergenic | 40.0% | |
| CTTAAACTCTGTGAAAGAGC+AGG | + | Chr4:83437047-83437066 | MsG0480023295.01.T01:intron | 40.0% | |
| GAATCTCAATGCGGTAAATC+AGG | + | Chr4:83437546-83437565 | MsG0480023295.01.T01:CDS | 40.0% | |
| GACATCATTGTGTTGTGTGT+GGG | - | Chr4:83437229-83437248 | None:intergenic | 40.0% | |
| TAGGATTGAATTCATGGTGG+TGG | + | Chr4:83438065-83438084 | MsG0480023295.01.T01:three_prime_UTR | 40.0% | |
| TCAACGAGTCAATTCAAGGA+GGG | + | Chr4:83437789-83437808 | MsG0480023295.01.T01:three_prime_UTR | 40.0% | |
| TCTCATTCTTGCAATTGCGA+AGG | + | Chr4:83437450-83437469 | MsG0480023295.01.T01:CDS | 40.0% | |
| TCTCCAAAATGTCTGATTGC+AGG | - | Chr4:83436965-83436984 | None:intergenic | 40.0% | |
| TCTGACGTATGGGTTTAAAC+TGG | - | Chr4:83437303-83437322 | None:intergenic | 40.0% | |
| TGACATCATTGTGTTGTGTG+TGG | - | Chr4:83437230-83437249 | None:intergenic | 40.0% | |
| TGGTGTTTGATCGTTCATGT+AGG | + | Chr4:83437405-83437424 | MsG0480023295.01.T01:intron | 40.0% | |
| ! | AAAGGTTTTGCTAGCAATGC+AGG | + | Chr4:83437004-83437023 | MsG0480023295.01.T01:CDS | 40.0% |
| ! | GTCCACCAAATTTGAAGCTT+GGG | + | Chr4:83437571-83437590 | MsG0480023295.01.T01:exon | 40.0% |
| ! | TTTTTCCCATCTGTATCCAC+GGG | - | Chr4:83437764-83437783 | None:intergenic | 40.0% |
| !! | CTGGTTCTGTGGTAAATTTC+GGG | + | Chr4:83437830-83437849 | MsG0480023295.01.T01:three_prime_UTR | 40.0% |
| !! | GCAATCAGACATTTTGGAGA+AGG | + | Chr4:83436965-83436984 | MsG0480023295.01.T01:CDS | 40.0% |
| !! | TCGAGTTTGACTTGTCTTGA+TGG | + | Chr4:83437385-83437404 | MsG0480023295.01.T01:intron | 40.0% |
| AAGTTTCCCGTGGATACAGA+TGG | + | Chr4:83437755-83437774 | MsG0480023295.01.T01:three_prime_UTR | 45.0% | |
| AGTTTCCCGTGGATACAGAT+GGG | + | Chr4:83437756-83437775 | MsG0480023295.01.T01:three_prime_UTR | 45.0% | |
| ATTCTTGCAATTGCGAAGGC+AGG | + | Chr4:83437454-83437473 | MsG0480023295.01.T01:CDS | 45.0% | |
| CAACGAGTCAATTCAAGGAG+GGG | + | Chr4:83437790-83437809 | MsG0480023295.01.T01:three_prime_UTR | 45.0% | |
| CTCAACGAGTCAATTCAAGG+AGG | + | Chr4:83437788-83437807 | MsG0480023295.01.T01:three_prime_UTR | 45.0% | |
| GGAGAATTGTCTGAACTCTC+TGG | + | Chr4:83437811-83437830 | MsG0480023295.01.T01:three_prime_UTR | 45.0% | |
| TCTCAATGCGGTAAATCAGG+AGG | + | Chr4:83437549-83437568 | MsG0480023295.01.T01:CDS | 45.0% | |
| ! | AGCCCTGCAATCAGACATTT+TGG | + | Chr4:83436959-83436978 | MsG0480023295.01.T01:CDS | 45.0% |
| ! | CCGTGTTCTTCACTAGTTTC+AGG | - | Chr4:83437499-83437518 | None:intergenic | 45.0% |
| ! | GGTCCACCAAATTTGAAGCT+TGG | + | Chr4:83437570-83437589 | MsG0480023295.01.T01:exon | 45.0% |
| !! | ACATTTTGGAGAAGGAGCTG+GGG | + | Chr4:83436973-83436992 | MsG0480023295.01.T01:CDS | 45.0% |
| !! | AGACATTTTGGAGAAGGAGC+TGG | + | Chr4:83436971-83436990 | MsG0480023295.01.T01:CDS | 45.0% |
| !! | GACATTTTGGAGAAGGAGCT+GGG | + | Chr4:83436972-83436991 | MsG0480023295.01.T01:CDS | 45.0% |
| CTCAGCTGCGAATCTCAATG+CGG | + | Chr4:83437537-83437556 | MsG0480023295.01.T01:CDS | 50.0% | |
| CTGTATCCACGGGAAACTTG+AGG | - | Chr4:83437754-83437773 | None:intergenic | 50.0% | |
| TCTGGCACAGAAGAATTCCG+AGG | + | Chr4:83436923-83436942 | MsG0480023295.01.T01:CDS | 50.0% | |
| TGCGAAGGCAGGTAAGCTAT+GGG | + | Chr4:83437465-83437484 | MsG0480023295.01.T01:CDS | 50.0% | |
| TTGCAGGGCTAATGCTCTTG+CGG | - | Chr4:83436949-83436968 | None:intergenic | 50.0% | |
| TTGCGAAGGCAGGTAAGCTA+TGG | + | Chr4:83437464-83437483 | MsG0480023295.01.T01:CDS | 50.0% | |
| !! | CATTTTGGAGAAGGAGCTGG+GGG | + | Chr4:83436974-83436993 | MsG0480023295.01.T01:CDS | 50.0% |
| !! | GTCTGAACTCTCTGGTTCTG+TGG | + | Chr4:83437819-83437838 | MsG0480023295.01.T01:three_prime_UTR | 50.0% |
| GGAGCTGGGGGAAGTTCAAA+AGG | + | Chr4:83436986-83437005 | MsG0480023295.01.T01:CDS | 55.0% | |
| TGTTGTGTGTGGGTGTGCGT+AGG | - | Chr4:83437219-83437238 | None:intergenic | 55.0% | |
| AGGACGCCTCAAGTTTCCCG+TGG | + | Chr4:83437745-83437764 | MsG0480023295.01.T01:three_prime_UTR | 60.0% | |
| GGCTAATGCTCTTGCGGCCT+CGG | - | Chr4:83436943-83436962 | None:intergenic | 60.0% | |
| GTGTGTGGGTGTGCGTAGGT+GGG | - | Chr4:83437215-83437234 | None:intergenic | 60.0% | |
| TGTGTGTGGGTGTGCGTAGG+TGG | - | Chr4:83437216-83437235 | None:intergenic | 60.0% | |
| ! | CGGGAAACTTGAGGCGTCCT+TGG | - | Chr4:83437745-83437764 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 83436909 | 83438095 | 83436909 | ID=MsG0480023295.01;Name=MsG0480023295.01 |
| Chr4 | mRNA | 83436909 | 83438095 | 83436909 | ID=MsG0480023295.01.T01;Parent=MsG0480023295.01;Name=MsG0480023295.01.T01;_AED=0.46;_eAED=0.46;_QI=0|1|0.5|1|1|1|2|510|91 |
| Chr4 | exon | 83436909 | 83437025 | 83436909 | ID=MsG0480023295.01.T01:exon:1109;Parent=MsG0480023295.01.T01 |
| Chr4 | exon | 83437427 | 83438095 | 83437427 | ID=MsG0480023295.01.T01:exon:1110;Parent=MsG0480023295.01.T01 |
| Chr4 | CDS | 83436909 | 83437025 | 83436909 | ID=MsG0480023295.01.T01:cds;Parent=MsG0480023295.01.T01 |
| Chr4 | CDS | 83437427 | 83437585 | 83437427 | ID=MsG0480023295.01.T01:cds;Parent=MsG0480023295.01.T01 |
| Chr4 | three_prime_UTR | 83437586 | 83438095 | 83437586 | ID=MsG0480023295.01.T01:three_prime_utr;Parent=MsG0480023295.01.T01 |
| Gene Sequence |
| Protein sequence |
