AlfalfaGEDB | MsG0780038653.01

M. sativa cultivar ZhongmuNo.1 / MsG0780038653.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038653.01.T01	XP_013448803.1	74.713	174	9	1	1	139	1	174	6.40E-75	231

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038653.01.T01	A0A072UAI2	74.713	174	9	1	1	139	1	174	3.06e-75	231

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047910.01	MsG0780038653.01	0.844703	6.414907e-59	1.044276e-55
MsG0080047955.01	MsG0780038653.01	0.800792	1.220493e-48	5.734034e-46
MsG0080047956.01	MsG0780038653.01	0.806469	8.102214e-50	4.401212e-47
MsG0080048068.01	MsG0780038653.01	0.815443	9.219485e-52	6.357516e-49
MsG0080048191.01	MsG0780038653.01	0.812653	3.804859e-51	2.432880e-48
MsG0080048198.01	MsG0780038653.01	0.815373	9.555773e-52	6.576597e-49
MsG0080048273.01	MsG0780038653.01	0.848720	5.119114e-60	9.481464e-57
MsG0080048274.01	MsG0780038653.01	0.817078	3.974154e-52	2.865730e-49
MsG0080048528.01	MsG0780038653.01	0.836748	7.803922e-57	9.926804e-54
MsG0080048611.01	MsG0780038653.01	0.829031	6.460910e-55	6.533386e-52

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038653.01.T01	MTR_7g059255	74.713	174	9	1	1	139	1	174	7.75e-79	231

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038653.01.T01	AT4G13220	41.060	151	47	5	29	139	28	176	9.45e-26	96.3

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Find 40 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTACGAAATTGGAGCG+AGG	0.691122	7:+50540152	None:intergenic
AAAATGTCATTTGCACCCTG+AGG	0.693528	7:+50536788	None:intergenic
AAAGATCAAGAACCACCTAG+CGG	0.725332	7:-50537077	MsG0780038653.01.T01:CDS
AAAGTTGTGAACAAAACCAT+TGG	0.570596	7:+50540313	None:intergenic
AAGATCAAGAACCACCTAGC+GGG	0.560815	7:-50537076	MsG0780038653.01.T01:CDS
AGATAGTTCTGCAGAATGCA+TGG	0.555735	7:-50538307	MsG0780038653.01.T01:intron
AGGAACTACGACCAAACCTA+TGG	0.545163	7:-50537048	MsG0780038653.01.T01:CDS
ATAGCCTTTAACAAAGCCTC+AGG	0.448382	7:-50536804	MsG0780038653.01.T01:three_prime_UTR
ATCCTATTAGCCTCTTCCAA+AGG	0.564567	7:+50537020	None:intergenic
ATCCTTTGGAAGAGGCTAAT+AGG	0.388720	7:-50537022	MsG0780038653.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTTGTGAACAAAACCAT+TGG	+	Chr7:50536846-50536865	None:intergenic	30.0%
AAATAAAGAAAGCTGTAGAG+AGG	+	Chr7:50539297-50539316	None:intergenic	30.0%
AAATGGTAATTGTGACTTAC+AGG	+	Chr7:50538917-50538936	None:intergenic	30.0%
AAGATAAGTCAATCCATAGA+GGG	-	Chr7:50537508-50537527	MsG0780038653.01.T01:intron	30.0%
AAGATATGATCCTTTCATGA+TGG	-	Chr7:50538265-50538284	MsG0780038653.01.T01:CDS	30.0%
AATACAGTAACCATCATGAA+AGG	+	Chr7:50538278-50538297	None:intergenic	30.0%
AATGGTAATTGTGACTTACA+GGG	+	Chr7:50538916-50538935	None:intergenic	30.0%
ACATTACATTAGCATGATCT+TGG	-	Chr7:50537896-50537915	MsG0780038653.01.T01:intron	30.0%
ATATTTGTGCTATATGGTAG+CGG	-	Chr7:50538958-50538977	MsG0780038653.01.T01:intron	30.0%
ATCCTAAAGTCTTAACCATT+GGG	+	Chr7:50539948-50539967	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	50536796	50540382	50536796	ID=MsG0780038653.01;Name=MsG0780038653.01
Chr7	mRNA	50536796	50540382	50536796	ID=MsG0780038653.01.T01;Parent=MsG0780038653.01;Name=MsG0780038653.01.T01;_AED=0.45;_eAED=0.45;_QI=40\|0.5\|1\|1\|0\|0\|3\|205\|139
Chr7	exon	50536796	50537141	50536796	ID=MsG0780038653.01.T01:exon:14786;Parent=MsG0780038653.01.T01
Chr7	exon	50538262	50538323	50538262	ID=MsG0780038653.01.T01:exon:14785;Parent=MsG0780038653.01.T01
Chr7	exon	50540126	50540382	50540126	ID=MsG0780038653.01.T01:exon:14784;Parent=MsG0780038653.01.T01
Chr7	five_prime_UTR	50540343	50540382	50540343	ID=MsG0780038653.01.T01:five_prime_utr;Parent=MsG0780038653.01.T01
Chr7	CDS	50540126	50540342	50540126	ID=MsG0780038653.01.T01:cds;Parent=MsG0780038653.01.T01
Chr7	CDS	50538262	50538323	50538262	ID=MsG0780038653.01.T01:cds;Parent=MsG0780038653.01.T01
Chr7	CDS	50537001	50537141	50537001	ID=MsG0780038653.01.T01:cds;Parent=MsG0780038653.01.T01
Chr7	three_prime_UTR	50536796	50537000	50536796	ID=MsG0780038653.01.T01:three_prime_utr;Parent=MsG0780038653.01.T01

Gene Sequence

>MsG0780038653.01.T01

ATGTTTGCCAATGGTTTTGTTCACAACTTTAGTTCTGTTCCATGTTGCTTTCAAAATCGAAACTTGGCTCCTACCCATCATCAATTTCGTTCACCCAATTCGGTTTTGAAGTTAAAGAAGCAAACTTTACTGCCAAACACTCAATTCAAGATTTCTAGAAGCCTAAAACCTCGCTCCAATTTCGTAGTTTTTGCAGAACAATCGAATTTATCTAAAGTTCTGCAGAATGCATGGAGAGTTGGTAAGGATGGAATTGATGCAGGCACAAATCTAGTCCCTGCTACCATAGGACTTGCATACTTTGCATACCTAGCATTCAATAAAGATCAAGAACCACCTAGCGGGAATGGAGGAACTACGACCAAACCTATGGATGATCCTTTGGAAGAGGCTAATAGGATAATGGATAAATACAAGTAG

Protein sequence

>MsG0780038653.01.T01

MFANGFVHNFSSVPCCFQNRNLAPTHHQFRSPNSVLKLKKQTLLPNTQFKISRSLKPRSNFVVFAEQSNLSKVLQNAWRVGKDGIDAGTNLVPATIGLAYFAYLAFNKDQEPPSGNGGTTTKPMDDPLEEANRIMDKYK*