AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023993.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023993.01.T01 MTR_8g106690 78.926 242 38 4 1 239 1 232 1.05e-133 376
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023993.01.T01 AT1G18060 60.406 197 77 1 42 237 28 224 1.47e-84 251

Find 59 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAATCATTCAGAGATATT+TGG 0.159294 4:+92108920 None:intergenic
TCTCTGAGTTTCTGACTTAT+TGG 0.171564 4:-92109408 MsG0480023993.01.T01:three_prime_UTR
GCAATAGCAGCTTACCCTTT+TGG 0.230168 4:+92110947 None:intergenic
GAAAGAAATATTCACATATA+TGG 0.257473 4:-92109386 MsG0480023993.01.T01:three_prime_UTR
TGATAAATTGTTAGGCAAAA+AGG 0.263160 4:-92109756 MsG0480023993.01.T01:intron
ATCGAAAACGGTGTATTTCT+TGG 0.273425 4:-92109733 MsG0480023993.01.T01:CDS
TGTTGAATAATAACACATTA+TGG 0.301842 4:+92109007 None:intergenic
GAAACAGTTGAAGTTCATTC+AGG 0.309771 4:-92109360 MsG0480023993.01.T01:intron
ACATATTGAGTACTAGGTTT+TGG 0.317968 4:-92109113 MsG0480023993.01.T01:three_prime_UTR
CCGGCCATTTGTGAGAAAAT+AGG 0.320453 4:-92109197 MsG0480023993.01.T01:three_prime_UTR
GTTGTTCTGAGAGGCTTTGA+TGG 0.339405 4:+92111065 None:intergenic
TCACCTAATGAGGGAAAGTT+TGG 0.348602 4:+92109055 None:intergenic
AAACAACCCACTTGTTGTTC+AGG 0.352992 4:-92110979 MsG0480023993.01.T01:CDS
GGATTTGTTGCTGGCTGAAA+TGG 0.375364 4:-92109092 MsG0480023993.01.T01:three_prime_UTR
ATGCCAAACTTTCCCTCATT+AGG 0.380971 4:-92109058 MsG0480023993.01.T01:three_prime_UTR
TATGCCCTGCTGTAGAAATT+CGG 0.384921 4:-92109222 MsG0480023993.01.T01:intron
GAAGTGGAGGCACTGCATTT+TGG 0.392068 4:-92109504 MsG0480023993.01.T01:CDS
ATGCCCTGCTGTAGAAATTC+GGG 0.411184 4:-92109221 MsG0480023993.01.T01:intron
GAGACGTACAACACATGAAT+TGG 0.417843 4:+92111098 None:intergenic
GAGAACCTTCGAATAAAAGT+TGG 0.424151 4:-92109643 MsG0480023993.01.T01:CDS
ACAAATCAGCCTTGGACAAA+AGG 0.429622 4:-92109605 MsG0480023993.01.T01:CDS
TTAGTTACATATTGAGTACT+AGG 0.432461 4:-92109119 MsG0480023993.01.T01:three_prime_UTR
GCCTTGGACAAAAGGAAGAC+AGG 0.435622 4:-92109597 MsG0480023993.01.T01:CDS
AGGATTCCCCTGGGAGAACC+TGG 0.442328 4:-92110560 MsG0480023993.01.T01:CDS
ATCGGACAATTAACATTTGA+AGG 0.443887 4:-92109706 MsG0480023993.01.T01:CDS
GCAGCTAACTTCACCTAATG+AGG 0.470454 4:+92109045 None:intergenic
CAGGGGAATCCTTTCCTCCA+AGG 0.495511 4:+92110571 None:intergenic
TCTTGACACCCTTGGAGGAA+AGG 0.499033 4:-92110580 MsG0480023993.01.T01:CDS
CAGCTAGCTACATTTGCAAA+TGG 0.499233 4:-92111147 MsG0480023993.01.T01:exon
AAACCTCTACAAATCAGCCT+TGG 0.505462 4:-92109613 MsG0480023993.01.T01:CDS
TTCAGGACGACAATCCCAAA+AGG 0.518826 4:-92110962 MsG0480023993.01.T01:CDS
CTTGGAGGAAAGGATTCCCC+TGG 0.519361 4:-92110570 MsG0480023993.01.T01:CDS
TGTCCAAGGCTGATTTGTAG+AGG 0.525164 4:+92109610 None:intergenic
GGTGTATTTCTTGGACCTAT+CGG 0.527087 4:-92109724 MsG0480023993.01.T01:CDS
AGGGGAATCCTTTCCTCCAA+GGG 0.528136 4:+92110572 None:intergenic
ATAAGCATCCAGGTTCTCCC+AGG 0.529448 4:+92110552 None:intergenic
TCAAATGTTAATTGTCCGAT+AGG 0.532866 4:+92109709 None:intergenic
GCTGAAAGAATCTCTTCTGC+TGG 0.545166 4:+92110646 None:intergenic
AAATGCAGCTAAGACAAGAA+AGG 0.548365 4:-92110671 MsG0480023993.01.T01:CDS
ATGTAACTAACTGAATCTGA+TGG 0.559804 4:+92109132 None:intergenic
TATCTTTACGTAGGAAGTAG+AGG 0.562498 4:-92110712 MsG0480023993.01.T01:intron
CAGCTAACTTCACCTAATGA+GGG 0.569648 4:+92109046 None:intergenic
GTTGCTCGAGGCCGAAGTGG+AGG 0.570500 4:-92109517 MsG0480023993.01.T01:CDS
CTGCTGTAGAAATTCGGGCC+CGG 0.580043 4:-92109216 MsG0480023993.01.T01:intron
TTGTCGTCCTGAACAACAAG+TGG 0.583884 4:+92110972 None:intergenic
AATCTCTGAACAGCTGTGAG+AGG 0.593439 4:+92110399 None:intergenic
CCTTGGACAAAAGGAAGACA+GGG 0.594579 4:-92109596 MsG0480023993.01.T01:CDS
TCAGGACGACAATCCCAAAA+GGG 0.601626 4:-92110961 MsG0480023993.01.T01:intron
TTTGTTGTTGTTGTTCTGAG+AGG 0.602946 4:+92111056 None:intergenic
TAAGCATCCAGGTTCTCCCA+GGG 0.619857 4:+92110553 None:intergenic
GCTGTTGCTCGAGGCCGAAG+TGG 0.620105 4:-92109520 MsG0480023993.01.T01:CDS
CATTTGAAGGCAGACTGTCG+TGG 0.634559 4:-92109693 MsG0480023993.01.T01:CDS
TTGGAGGAAAGGATTCCCCT+GGG 0.641606 4:-92110569 MsG0480023993.01.T01:CDS
AAAATGCAGTGCCTCCACTT+CGG 0.663787 4:+92109506 None:intergenic
GAGGAAATAGCTGTTGCTCG+AGG 0.672148 4:-92109529 MsG0480023993.01.T01:CDS
AGACAGGGAACCAAGTACAA+AGG 0.680370 4:-92109581 MsG0480023993.01.T01:CDS
TGTCGTCCTGAACAACAAGT+GGG 0.688830 4:+92110973 None:intergenic
ATGTCGTAACATCTTTACTG+TGG 0.709946 4:-92108984 MsG0480023993.01.T01:three_prime_UTR
AAGCATCCAGGTTCTCCCAG+GGG 0.717216 4:+92110554 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAATTTTTACTTATGTTA+AGG - Chr4:92109877-92109896 MsG0480023993.01.T01:intron 10.0%
!!! AAATTAAATTAAGTCGTTTT+TGG + Chr4:92109327-92109346 None:intergenic 15.0%
!!! GAATTTTAGAAAAAATTAGA+TGG - Chr4:92109632-92109651 MsG0480023993.01.T01:CDS 15.0%
!!! TATTATTTTTCCACTATAAA+TGG + Chr4:92109756-92109775 None:intergenic 15.0%
!! ACATAAAACCAGATAAAAAA+TGG + Chr4:92110514-92110533 None:intergenic 20.0%
!! GAAAGAAATATTCACATATA+TGG - Chr4:92110681-92110700 MsG0480023993.01.T01:CDS 20.0%
!! TGTTGAATAATAACACATTA+TGG + Chr4:92111063-92111082 None:intergenic 20.0%
!!! CTTTAGAAGAAAAAAAACTA+GGG - Chr4:92110242-92110261 MsG0480023993.01.T01:intron 20.0%
!!! GTTTTTATCTATGAGTTATA+AGG - Chr4:92110096-92110115 MsG0480023993.01.T01:intron 20.0%
!!! TCTTTAGAAGAAAAAAAACT+AGG - Chr4:92110241-92110260 MsG0480023993.01.T01:intron 20.0%
!!! TGTTATGTTGATAAATTGTT+AGG - Chr4:92110303-92110322 MsG0480023993.01.T01:intron 20.0%
!!! TTTTAGAAAAAATTAGATGG+TGG - Chr4:92109635-92109654 MsG0480023993.01.T01:CDS 20.0%
! ATAAGCTCTTCGATATATTA+TGG - Chr4:92109203-92109222 MsG0480023993.01.T01:three_prime_UTR 25.0%
! ATAATATATCGAAGAGCTTA+TGG + Chr4:92109204-92109223 None:intergenic 25.0%
! CTTCTAATTATGCAAATGAA+GGG + Chr4:92109782-92109801 None:intergenic 25.0%
! TCAAAACACAAACACATAAA+AGG + Chr4:92109811-92109830 None:intergenic 25.0%
! TCAAATCATTCAGAGATATT+TGG + Chr4:92111150-92111169 None:intergenic 25.0%
! TCTATATACATTTCAGTTTC+TGG + Chr4:92110782-92110801 None:intergenic 25.0%
! TGATAAATTGTTAGGCAAAA+AGG - Chr4:92110311-92110330 MsG0480023993.01.T01:intron 25.0%
! TGGTAAATCACAATGTTATT+TGG - Chr4:92110056-92110075 MsG0480023993.01.T01:intron 25.0%
! TTAGTTACATATTGAGTACT+AGG - Chr4:92110948-92110967 MsG0480023993.01.T01:intron 25.0%
!! AATCACAATGTTATTTGGAA+TGG - Chr4:92110061-92110080 MsG0480023993.01.T01:intron 25.0%
!! CAATGAAGAATCTTTTATAG+AGG + Chr4:92110122-92110141 None:intergenic 25.0%
!! GTATCTAGAATGAATATAGA+TGG + Chr4:92109725-92109744 None:intergenic 25.0%
!! TTGATTCTTTTGCATTTTTG+TGG - Chr4:92110609-92110628 MsG0480023993.01.T01:CDS 25.0%
!! TTTAACTTCTATCTTTACGT+AGG - Chr4:92109346-92109365 MsG0480023993.01.T01:intron 25.0%
AAAAATGGATCCTTTGTACT+TGG + Chr4:92110499-92110518 None:intergenic 30.0%
ACATAAGAGTCCATTTATAG+TGG - Chr4:92109743-92109762 MsG0480023993.01.T01:CDS 30.0%
ATAACATTGTGATTTACCAC+CGG + Chr4:92110055-92110074 None:intergenic 30.0%
ATCGGACAATTAACATTTGA+AGG - Chr4:92110361-92110380 MsG0480023993.01.T01:intron 30.0%
ATGTAACTAACTGAATCTGA+TGG + Chr4:92110938-92110957 None:intergenic 30.0%
GCTTCTAATTATGCAAATGA+AGG + Chr4:92109783-92109802 None:intergenic 30.0%
TATGCCAAATCATCAAACTA+TGG - Chr4:92110210-92110229 MsG0480023993.01.T01:intron 30.0%
TCAAATGTTAATTGTCCGAT+AGG + Chr4:92110361-92110380 None:intergenic 30.0%
TGTTAAGGACAATTCTACAT+TGG - Chr4:92109892-92109911 MsG0480023993.01.T01:intron 30.0%
TTCTACATTGGATATTGTGA+TGG - Chr4:92109904-92109923 MsG0480023993.01.T01:intron 30.0%
TTGCATAAGAAGAGTTAAGA+AGG + Chr4:92110145-92110164 None:intergenic 30.0%
TTGGCATAAGCAACATTTAA+AGG + Chr4:92110198-92110217 None:intergenic 30.0%
! ACATATTGAGTACTAGGTTT+TGG - Chr4:92110954-92110973 MsG0480023993.01.T01:intron 30.0%
! ATGTTCTTTTCCTTTCCATT+TGG - Chr4:92109150-92109169 MsG0480023993.01.T01:three_prime_UTR 30.0%
! ATTCTTTTGCATTTTTGTGG+AGG - Chr4:92110612-92110631 MsG0480023993.01.T01:CDS 30.0%
! GAATCCTATTTTCTCACAAA+TGG + Chr4:92110877-92110896 None:intergenic 30.0%
! TCTCTTATTTCGTATGATTC+TGG - Chr4:92109564-92109583 MsG0480023993.01.T01:CDS 30.0%
! TGTTCTTTTCCTTTCCATTT+GGG - Chr4:92109151-92109170 MsG0480023993.01.T01:three_prime_UTR 30.0%
! TTAGCCATAGTTTGATGATT+TGG + Chr4:92110217-92110236 None:intergenic 30.0%
!! CTGATTTGTAGAGGTTTTAA+AGG + Chr4:92110451-92110470 None:intergenic 30.0%
!! TGTGTTTTGAACTACATTCT+CGG - Chr4:92109821-92109840 MsG0480023993.01.T01:intron 30.0%
!!! CAAAGGATCCATTTTTTATC+TGG - Chr4:92110503-92110522 MsG0480023993.01.T01:intron 30.0%
!!! GATGCTTATTTTTACTGCTA+AGG - Chr4:92109529-92109548 MsG0480023993.01.T01:CDS 30.0%
!!! GTTGTTTTGAATGTCATCAA+GGG + Chr4:92109075-92109094 None:intergenic 30.0%
!!! TATCTGGTTTTATGTTGATG+AGG - Chr4:92110519-92110538 MsG0480023993.01.T01:intron 30.0%
AAATGCAGCTAAGACAAGAA+AGG - Chr4:92109396-92109415 MsG0480023993.01.T01:three_prime_UTR 35.0%
AGCAGTAAAAATAAGCATCC+AGG + Chr4:92109528-92109547 None:intergenic 35.0%
ATCGAAAACGGTGTATTTCT+TGG - Chr4:92110334-92110353 MsG0480023993.01.T01:intron 35.0%
ATGTCGTAACATCTTTACTG+TGG - Chr4:92111083-92111102 MsG0480023993.01.T01:CDS 35.0%
CTTAGCCACTTACATGAAAT+CGG - Chr4:92109973-92109992 MsG0480023993.01.T01:intron 35.0%
CTTATGGACATGGTATAAGT+TGG + Chr4:92109188-92109207 None:intergenic 35.0%
GAAACAGTTGAAGTTCATTC+AGG - Chr4:92110707-92110726 MsG0480023993.01.T01:intron 35.0%
GAGAACCTTCGAATAAAAGT+TGG - Chr4:92110424-92110443 MsG0480023993.01.T01:CDS 35.0%
TAACATTGTGATTTACCACC+GGG + Chr4:92110054-92110073 None:intergenic 35.0%
TAGGCAAAAAGGATCGAAAA+CGG - Chr4:92110322-92110341 MsG0480023993.01.T01:intron 35.0%
TATCTTTACGTAGGAAGTAG+AGG - Chr4:92109355-92109374 MsG0480023993.01.T01:intron 35.0%
TCTCTGAGTTTCTGACTTAT+TGG - Chr4:92110659-92110678 MsG0480023993.01.T01:CDS 35.0%
TTAGCCACTTACATGAAATC+GGG - Chr4:92109974-92109993 MsG0480023993.01.T01:intron 35.0%
! AAGGTCCAACTTTTATTCGA+AGG + Chr4:92110432-92110451 None:intergenic 35.0%
! GTTCTTTTCCTTTCCATTTG+GGG - Chr4:92109152-92109171 MsG0480023993.01.T01:three_prime_UTR 35.0%
!! TTTGTTGTTGTTGTTCTGAG+AGG + Chr4:92109014-92109033 None:intergenic 35.0%
!!! GGTTGTTTTGAATGTCATCA+AGG + Chr4:92109076-92109095 None:intergenic 35.0%
AAACCTCTACAAATCAGCCT+TGG - Chr4:92110454-92110473 MsG0480023993.01.T01:intron 40.0%
AACATTGTGATTTACCACCG+GGG + Chr4:92110053-92110072 None:intergenic 40.0%
ACAAATCAGCCTTGGACAAA+AGG - Chr4:92110462-92110481 MsG0480023993.01.T01:intron 40.0%
ATGCCAAACTTTCCCTCATT+AGG - Chr4:92111009-92111028 MsG0480023993.01.T01:CDS 40.0%
CAGCTAACTTCACCTAATGA+GGG + Chr4:92111024-92111043 None:intergenic 40.0%
CAGCTAGCTACATTTGCAAA+TGG - Chr4:92108920-92108939 MsG0480023993.01.T01:three_prime_UTR 40.0%
GAGACGTACAACACATGAAT+TGG + Chr4:92108972-92108991 None:intergenic 40.0%
GGGTGTCAAGAAAAAGAAGA+AGG + Chr4:92109478-92109497 None:intergenic 40.0%
GGTGTATTTCTTGGACCTAT+CGG - Chr4:92110343-92110362 MsG0480023993.01.T01:intron 40.0%
TAACCCCGATTTCATGTAAG+TGG + Chr4:92109981-92110000 None:intergenic 40.0%
TAGCCACTTACATGAAATCG+GGG - Chr4:92109975-92109994 MsG0480023993.01.T01:intron 40.0%
TATCGAAGAGCTTATGGACA+TGG + Chr4:92109198-92109217 None:intergenic 40.0%
TATGCCCTGCTGTAGAAATT+CGG - Chr4:92110845-92110864 MsG0480023993.01.T01:intron 40.0%
TCACCTAATGAGGGAAAGTT+TGG + Chr4:92111015-92111034 None:intergenic 40.0%
! CAATAGCAGCTTACCCTTTT+GGG + Chr4:92109122-92109141 None:intergenic 40.0%
! CCTATTTTCTCACAAATGGC+CGG + Chr4:92110873-92110892 None:intergenic 40.0%
! CTATTTTCTCACAAATGGCC+GGG + Chr4:92110872-92110891 None:intergenic 40.0%
! CTTCTTTTTCTTGACACCCT+TGG - Chr4:92109479-92109498 MsG0480023993.01.T01:CDS 40.0%
! GTTATTTGGAATGGCTCTTG+TGG - Chr4:92110070-92110089 MsG0480023993.01.T01:intron 40.0%
! TACGAGGTTGTGAGGATTTT+AGG - Chr4:92109936-92109955 MsG0480023993.01.T01:intron 40.0%
!! AAACAACCCACTTGTTGTTC+AGG - Chr4:92109088-92109107 MsG0480023993.01.T01:three_prime_UTR 40.0%
!!! CTAGGTTTTGGATTTGTTGC+TGG - Chr4:92110966-92110985 MsG0480023993.01.T01:CDS 40.0%
AAAATGCAGTGCCTCCACTT+CGG + Chr4:92110564-92110583 None:intergenic 45.0%
AATCTCTGAACAGCTGTGAG+AGG + Chr4:92109671-92109690 None:intergenic 45.0%
AGACAGGGAACCAAGTACAA+AGG - Chr4:92110486-92110505 MsG0480023993.01.T01:intron 45.0%
ATGCCCTGCTGTAGAAATTC+GGG - Chr4:92110846-92110865 MsG0480023993.01.T01:intron 45.0%
CATAAGCTCCCCAAATGGAA+AGG + Chr4:92109163-92109182 None:intergenic 45.0%
CCGGCCATTTGTGAGAAAAT+AGG - Chr4:92110870-92110889 MsG0480023993.01.T01:intron 45.0%
CCTTGGACAAAAGGAAGACA+GGG - Chr4:92110471-92110490 MsG0480023993.01.T01:intron 45.0%
GCAGCTAACTTCACCTAATG+AGG + Chr4:92111025-92111044 None:intergenic 45.0%
GCTGAAAGAATCTCTTCTGC+TGG + Chr4:92109424-92109443 None:intergenic 45.0%
TCAGGACGACAATCCCAAAA+GGG - Chr4:92109106-92109125 MsG0480023993.01.T01:three_prime_UTR 45.0%
TCCTCACAACCTCGTAAAAG+TGG + Chr4:92109932-92109951 None:intergenic 45.0%
TGGTTCATAAGCTCCCCAAA+TGG + Chr4:92109168-92109187 None:intergenic 45.0%
TGTCGTCCTGAACAACAAGT+GGG + Chr4:92109097-92109116 None:intergenic 45.0%
TTCAGGACGACAATCCCAAA+AGG - Chr4:92109105-92109124 MsG0480023993.01.T01:three_prime_UTR 45.0%
TTGTCGTCCTGAACAACAAG+TGG + Chr4:92109098-92109117 None:intergenic 45.0%
! CTTTTTCTTGACACCCTTGG+AGG - Chr4:92109482-92109501 MsG0480023993.01.T01:CDS 45.0%
! GCAATAGCAGCTTACCCTTT+TGG + Chr4:92109123-92109142 None:intergenic 45.0%
!! ACCACTTTTACGAGGTTGTG+AGG - Chr4:92109928-92109947 MsG0480023993.01.T01:intron 45.0%
!! GGATTTGTTGCTGGCTGAAA+TGG - Chr4:92110975-92110994 MsG0480023993.01.T01:CDS 45.0%
!! GTGATGGTACCACTTTTACG+AGG - Chr4:92109920-92109939 MsG0480023993.01.T01:intron 45.0%
!! GTTGTTCTGAGAGGCTTTGA+TGG + Chr4:92109005-92109024 None:intergenic 45.0%
!! TGTCCAAGGCTGATTTGTAG+AGG + Chr4:92110460-92110479 None:intergenic 45.0%
AGGGGAATCCTTTCCTCCAA+GGG + Chr4:92109498-92109517 None:intergenic 50.0%
ATAAGCATCCAGGTTCTCCC+AGG + Chr4:92109518-92109537 None:intergenic 50.0%
CATTTGAAGGCAGACTGTCG+TGG - Chr4:92110374-92110393 MsG0480023993.01.T01:intron 50.0%
GAGGAAATAGCTGTTGCTCG+AGG - Chr4:92110538-92110557 MsG0480023993.01.T01:intron 50.0%
GCCTTGGACAAAAGGAAGAC+AGG - Chr4:92110470-92110489 MsG0480023993.01.T01:intron 50.0%
TAAGCATCCAGGTTCTCCCA+GGG + Chr4:92109517-92109536 None:intergenic 50.0%
TCTTGACACCCTTGGAGGAA+AGG - Chr4:92109487-92109506 MsG0480023993.01.T01:CDS 50.0%
TTGGAGGAAAGGATTCCCCT+GGG - Chr4:92109498-92109517 MsG0480023993.01.T01:CDS 50.0%
! CCCTGTCTTCCTTTTGTCCA+AGG + Chr4:92110474-92110493 None:intergenic 50.0%
!!! ATTTTGGTGTCGGTGTCGTC+AGG - Chr4:92110579-92110598 MsG0480023993.01.T01:CDS 50.0%
!!! GAAGTGGAGGCACTGCATTT+TGG - Chr4:92110563-92110582 MsG0480023993.01.T01:CDS 50.0%
!!! GAGGCACTGCATTTTGGTGT+CGG - Chr4:92110569-92110588 MsG0480023993.01.T01:CDS 50.0%
!!! GGAGGCACTGCATTTTGTGT+CGG - Chr4:92110630-92110649 MsG0480023993.01.T01:CDS 50.0%
AAGCATCCAGGTTCTCCCAG+GGG + Chr4:92109516-92109535 None:intergenic 55.0%
CAGGGGAATCCTTTCCTCCA+AGG + Chr4:92109499-92109518 None:intergenic 55.0%
CGACCACTTGTGCTAAACCC+CGG - Chr4:92110033-92110052 MsG0480023993.01.T01:intron 55.0%
CGGGGTTTAGCACAAGTGGT+CGG + Chr4:92110035-92110054 None:intergenic 55.0%
CTGCTGTAGAAATTCGGGCC+CGG - Chr4:92110851-92110870 MsG0480023993.01.T01:intron 55.0%
CTTGGAGGAAAGGATTCCCC+TGG - Chr4:92109497-92109516 MsG0480023993.01.T01:CDS 55.0%
GGGCCCGAATTTCTACAGCA+GGG + Chr4:92110852-92110871 None:intergenic 55.0%
GGTTTAGCACAAGTGGTCGG+TGG + Chr4:92110032-92110051 None:intergenic 55.0%
AGCACAAGTGGTCGGTGGCT+CGG + Chr4:92110027-92110046 None:intergenic 60.0%
AGGATTCCCCTGGGAGAACC+TGG - Chr4:92109507-92109526 MsG0480023993.01.T01:CDS 60.0%
CCACCGGGGTTTAGCACAAG+TGG + Chr4:92110039-92110058 None:intergenic 60.0%
CCACTTGTGCTAAACCCCGG+TGG - Chr4:92110036-92110055 MsG0480023993.01.T01:intron 60.0%
CGGGCCCGAATTTCTACAGC+AGG + Chr4:92110853-92110872 None:intergenic 60.0%
GCTGTTGCTCGAGGCCGAAG+TGG - Chr4:92110547-92110566 MsG0480023993.01.T01:CDS 65.0%
GTTGCTCGAGGCCGAAGTGG+AGG - Chr4:92110550-92110569 MsG0480023993.01.T01:CDS 65.0%
!! GCTCGGTGTGCAGGGTGCGT+GGG + Chr4:92110010-92110029 None:intergenic 70.0%
!! GGTCGGTGGCTCGGTGTGCA+GGG + Chr4:92110018-92110037 None:intergenic 70.0%
!! TGGTCGGTGGCTCGGTGTGC+AGG + Chr4:92110019-92110038 None:intergenic 70.0%
!! GGCTCGGTGTGCAGGGTGCG+TGG + Chr4:92110011-92110030 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 92108915 92111174 92108915 ID=MsG0480023993.01;Name=MsG0480023993.01
Chr4 mRNA 92108915 92111174 92108915 ID=MsG0480023993.01.T01;Parent=MsG0480023993.01;Name=MsG0480023993.01.T01;_AED=0.50;_eAED=0.50;_QI=24|1|1|1|0|0|5|431|239
Chr4 exon 92108915 92109229 92108915 ID=MsG0480023993.01.T01:exon:62944;Parent=MsG0480023993.01.T01
Chr4 exon 92109361 92109764 92109361 ID=MsG0480023993.01.T01:exon:62943;Parent=MsG0480023993.01.T01
Chr4 exon 92110389 92110448 92110389 ID=MsG0480023993.01.T01:exon:62942;Parent=MsG0480023993.01.T01
Chr4 exon 92110539 92110721 92110539 ID=MsG0480023993.01.T01:exon:62941;Parent=MsG0480023993.01.T01
Chr4 exon 92110962 92111174 92110962 ID=MsG0480023993.01.T01:exon:62940;Parent=MsG0480023993.01.T01
Chr4 five_prime_UTR 92111151 92111174 92111151 ID=MsG0480023993.01.T01:five_prime_utr;Parent=MsG0480023993.01.T01
Chr4 CDS 92110962 92111150 92110962 ID=MsG0480023993.01.T01:cds;Parent=MsG0480023993.01.T01
Chr4 CDS 92110539 92110721 92110539 ID=MsG0480023993.01.T01:cds;Parent=MsG0480023993.01.T01
Chr4 CDS 92110389 92110448 92110389 ID=MsG0480023993.01.T01:cds;Parent=MsG0480023993.01.T01
Chr4 CDS 92109477 92109764 92109477 ID=MsG0480023993.01.T01:cds;Parent=MsG0480023993.01.T01
Chr4 three_prime_UTR 92109361 92109476 92109361 ID=MsG0480023993.01.T01:three_prime_utr;Parent=MsG0480023993.01.T01
Chr4 three_prime_UTR 92108915 92109229 92108915 ID=MsG0480023993.01.T01:three_prime_utr;Parent=MsG0480023993.01.T01
Gene Sequence

>MsG0480023993.01.T01

ATGGCAATGAACTACTGTATACACACATCACCAATTCATGTGTTGTACGTCTCATCTTTTAAACCATCAAAGCCTCTCAGAACAACAACAACAAAACATCATCATCATGTTCAAAGAACAAGAATAAGAGCAACCCTTGATGACATTCAAAACAACCCACTTGTTGTTCAGGACGACAATCCCAAAAGGGAAGTAGAGGAATGTGTGAAACTGCTTAAAATGCAGCTAAGACAAGAAAGGTACCAGCAGAAGAGATTCTTTCAGCACTGTCTCTCATTGAGAAAGCAAAAATTGATCCTTCTTCTTTTTCTTGACACCCTTGGAGGAAAGGATTCCCCTGGGAGAACCTGGATGCTTATTTTTACTGCTAAGAAAAAATTAGATGGTGGTGTATATTTTCCTCTCACAGCTGTTCAGAGATTTGATGCTGCTGCAAAAAGGATCGAAAACGGTGTATTTCTTGGACCTATCGGACAATTAACATTTGAAGGCAGACTGTCGTGGAAAAACAGAATATTGTCTTTCATTTTTGAGAACCTTCGAATAAAAGTTGGACCTTTAAAACCTCTACAAATCAGCCTTGGACAAAAGGAAGACAGGGAACCAAGTACAAAGGATCCATTTTTTATCTGGTTTTATGTTGATGAGGAAATAGCTGTTGCTCGAGGCCGAAGTGGAGGCACTGCATTTTGGTGTCGGTGTCGTCAGGTTGATATTTGA

Protein sequence

>MsG0480023993.01.T01

MAMNYCIHTSPIHVLYVSSFKPSKPLRTTTTKHHHHVQRTRIRATLDDIQNNPLVVQDDNPKREVEECVKLLKMQLRQERYQQKRFFQHCLSLRKQKLILLLFLDTLGGKDSPGRTWMLIFTAKKKLDGGVYFPLTAVQRFDAAAKRIENGVFLGPIGQLTFEGRLSWKNRILSFIFENLRIKVGPLKPLQISLGQKEDREPSTKDPFFIWFYVDEEIAVARGRSGGTAFWCRCRQVDI*