AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013111.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013111.01.T01 MTR_3g435320 99.281 139 1 0 12 150 44 182 2.08e-99 283
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013111.01.T01 AT1G18730 70.866 127 36 1 19 144 2 128 1.81e-63 191
MsG0380013111.01.T01 AT1G18730 69.231 130 39 1 16 144 45 174 2.42e-63 192
MsG0380013111.01.T01 AT1G18730 69.231 130 39 1 16 144 46 175 2.70e-63 192
MsG0380013111.01.T01 AT1G18730 66.304 92 30 1 16 106 45 136 1.93e-43 140
MsG0380013111.01.T01 AT1G18730 66.304 92 30 1 16 106 45 136 2.29e-43 140

Find 44 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGGGGAGTCTTATTCTT+TGG 0.250564 3:+30632116 MsG0380013111.01.T01:CDS
GTACATAATGTTCACTGTTT+GGG 0.251834 3:+30632100 MsG0380013111.01.T01:CDS
TATGTTTCTGAATCGTAATA+TGG 0.282914 3:-30632254 None:intergenic
TGGTCAATTGATGGACTAAA+AGG 0.295742 3:-30633674 None:intergenic
ACGTAGAGAAATATGAAATT+TGG 0.321778 3:+30630065 None:intergenic
GGTTATGCAGCAAGAGGTTA+TGG 0.323069 3:+30633513 MsG0380013111.01.T01:intron
GGTACATAATGTTCACTGTT+TGG 0.337904 3:+30632099 MsG0380013111.01.T01:CDS
TTTCTAATTAAGGTGTTAGA+TGG 0.341583 3:+30631816 MsG0380013111.01.T01:intron
CTCACGCCACAGGGCTTCTC+TGG 0.342613 3:-30633545 None:intergenic
ATCACTAATTCGTTACAATA+AGG 0.347418 3:-30630092 None:intergenic
GAGGAGATGGCACTGGAAAC+TGG 0.350136 3:+30632288 MsG0380013111.01.T01:CDS
TTATAACCGAGAAAACAATT+TGG 0.357393 3:+30631934 MsG0380013111.01.T01:CDS
ATTGCCATCAGTGGAATATC+TGG 0.357533 3:-30631879 None:intergenic
ATTACGATTCAGAAACATAT+AGG 0.360570 3:+30632258 MsG0380013111.01.T01:CDS
TTACGATTCAGAAACATATA+GGG 0.363321 3:+30632259 MsG0380013111.01.T01:CDS
GGCAATTCTAGTAGAACAAT+TGG 0.375396 3:+30631896 MsG0380013111.01.T01:CDS
GGTATCACTTGGTCAATTGA+TGG 0.459374 3:-30633683 None:intergenic
ATGTTTCTGAATCGTAATAT+GGG 0.462762 3:-30632253 None:intergenic
ACTTGAAGAAGCAGCAAAGA+AGG 0.487076 3:+30633612 MsG0380013111.01.T01:CDS
CTTATTCTTTGGTTCCATGA+AGG 0.490823 3:+30632127 MsG0380013111.01.T01:CDS
AATGTACTGTTATTAAACTA+CGG 0.491484 3:+30633760 MsG0380013111.01.T01:three_prime_UTR
CACAATATAAATCAATGAGC+AGG 0.505811 3:+30633805 MsG0380013111.01.T01:three_prime_UTR
GGAGATGGAGGAGATGGCAC+TGG 0.510554 3:+30632281 MsG0380013111.01.T01:CDS
CAATCAACTCCTCACGCCAC+AGG 0.510782 3:-30633555 None:intergenic
CATAATAATGAGGTATCACT+TGG 0.523201 3:-30633694 None:intergenic
TCAGAAACATATAGGGGAGA+TGG 0.524239 3:+30632266 MsG0380013111.01.T01:CDS
GCATCTATGTGCAAAGTGAA+TGG 0.524899 3:+30631852 MsG0380013111.01.T01:CDS
TTTAATCCTTTGCAGACGCT+TGG 0.529767 3:+30632078 MsG0380013111.01.T01:intron
TACATAATGTTCACTGTTTG+GGG 0.555106 3:+30632101 MsG0380013111.01.T01:CDS
CAGAGAAGCCCTGTGGCGTG+AGG 0.566266 3:+30633546 MsG0380013111.01.T01:CDS
TATGTATATACATAATAATG+AGG 0.569260 3:-30633704 None:intergenic
TTTACCAGATATTCCACTGA+TGG 0.571820 3:+30631875 MsG0380013111.01.T01:CDS
TATAGGGGAGATGGAGGAGA+TGG 0.574917 3:+30632275 MsG0380013111.01.T01:CDS
GCAAGAGGTTATGGAAGCAG+AGG 0.578491 3:+30633522 MsG0380013111.01.T01:intron
TCTACTAGAATTGCCATCAG+TGG 0.584764 3:-30631888 None:intergenic
GAAACATATAGGGGAGATGG+AGG 0.597630 3:+30632269 MsG0380013111.01.T01:CDS
AGAAGCAGCAAAGAAGGAGG+AGG 0.609366 3:+30633618 MsG0380013111.01.T01:CDS
AATCAACTCCTCACGCCACA+GGG 0.615196 3:-30633554 None:intergenic
ATTCTAGTAGAACAATTGGA+AGG 0.631796 3:+30631900 MsG0380013111.01.T01:CDS
TGGAAACTGGATATATGAGA+AGG 0.633434 3:+30632301 MsG0380013111.01.T01:CDS
TACGATTCAGAAACATATAG+GGG 0.649546 3:+30632260 MsG0380013111.01.T01:CDS
GTGGCGTGAGGAGTTGATTG+AGG 0.650121 3:+30633558 MsG0380013111.01.T01:CDS
TGAAGAAGCAGCAAAGAAGG+AGG 0.658434 3:+30633615 MsG0380013111.01.T01:CDS
CAGAGGCCAGAGAAGCCCTG+TGG 0.664634 3:+30633539 MsG0380013111.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTGTTATATATAAATAAAAA+AGG + Chr3:30630366-30630385 MsG0380013111.01.T01:intron 10.0%
!! TAATTTCCATATATAATTAT+CGG + Chr3:30631588-30631607 MsG0380013111.01.T01:intron 10.0%
!! TTTAATAATATATTATGAGT+AGG + Chr3:30630884-30630903 MsG0380013111.01.T01:intron 10.0%
!!! AAAAAAATACAAGTTTTTAT+AGG + Chr3:30631747-30631766 MsG0380013111.01.T01:intron 10.0%
!!! AGTTACAATTTTTTTTTAAA+TGG + Chr3:30630338-30630357 MsG0380013111.01.T01:intron 10.0%
!!! CTTTTCTTAAAATAAATAAA+TGG - Chr3:30633391-30633410 None:intergenic 10.0%
!!! TTTTAAATTTGATTGTTTAT+TGG + Chr3:30632050-30632069 MsG0380013111.01.T01:intron 10.0%
!! AAAATATTGAGCTTAAAATT+TGG - Chr3:30633080-30633099 None:intergenic 15.0%
!! AATTTCCATATATAATTATC+GGG + Chr3:30631589-30631608 MsG0380013111.01.T01:intron 15.0%
!! ATGAATATATGAATTGAAAA+CGG - Chr3:30631266-30631285 None:intergenic 15.0%
!! TATGTATATACATAATAATG+AGG - Chr3:30633707-30633726 None:intergenic 15.0%
!! TTATATATGGAAATTAAAGA+CGG - Chr3:30631584-30631603 None:intergenic 15.0%
!!! AATCAATATATTTTTGACAA+AGG - Chr3:30632017-30632036 None:intergenic 15.0%
!!! ATCAATATATTTTTGACAAA+GGG - Chr3:30632016-30632035 None:intergenic 15.0%
!!! TGAAATTTTTAACATGATTT+AGG + Chr3:30632229-30632248 MsG0380013111.01.T01:intron 15.0%
!!! TTAAATTGTAGCTATTTTTA+TGG + Chr3:30633492-30633511 MsG0380013111.01.T01:intron 15.0%
!!! TTTGTTATATGATTTTATGT+TGG + Chr3:30632193-30632212 MsG0380013111.01.T01:intron 15.0%
!!! TTTTTTAATAGAAAGCAAAT+TGG + Chr3:30633312-30633331 MsG0380013111.01.T01:intron 15.0%
!! AAATATCAAAGTTGTTTGAT+CGG + Chr3:30632867-30632886 MsG0380013111.01.T01:intron 20.0%
!! AAATTACAAACATACCTTTA+AGG + Chr3:30632768-30632787 MsG0380013111.01.T01:intron 20.0%
!! AATAATATATTATGAGTAGG+CGG + Chr3:30630887-30630906 MsG0380013111.01.T01:intron 20.0%
!! AATGTACTGTTATTAAACTA+CGG + Chr3:30633760-30633779 MsG0380013111.01.T01:three_prime_UTR 20.0%
!! AATTACAAACATACCTTTAA+GGG + Chr3:30632769-30632788 MsG0380013111.01.T01:intron 20.0%
!! AGGGAATGTATATATAAATA+AGG + Chr3:30631035-30631054 MsG0380013111.01.T01:intron 20.0%
!! ATATATAAATAAGGATACGT+AGG + Chr3:30631044-30631063 MsG0380013111.01.T01:intron 20.0%
!! CATATGTTAAAAAACCAAAA+CGG - Chr3:30632707-30632726 None:intergenic 20.0%
!! CTTAAAATAAATAAATGGTC+AGG - Chr3:30633386-30633405 None:intergenic 20.0%
!!! ATTTAAAATGCAAGATTTCA+TGG - Chr3:30633478-30633497 None:intergenic 20.0%
!!! TGATCTTTAAGAAAACATTA+TGG - Chr3:30630660-30630679 None:intergenic 20.0%
! AAATAGAACAAAAAGTTGGA+GGG + Chr3:30633581-30633600 MsG0380013111.01.T01:CDS 25.0%
! AACTCTCTTCTATATCATAT+AGG + Chr3:30633257-30633276 MsG0380013111.01.T01:intron 25.0%
! AAGTTGTAACAAAAATCAGT+TGG + Chr3:30632960-30632979 MsG0380013111.01.T01:intron 25.0%
! ATATACATTCCCTTCAATTT+GGG - Chr3:30631028-30631047 None:intergenic 25.0%
! ATCACTAATTCGTTACAATA+AGG - Chr3:30630095-30630114 None:intergenic 25.0%
! ATCTATCTATCAACCAATAT+TGG + Chr3:30630140-30630159 MsG0380013111.01.T01:intron 25.0%
! ATTACGATTCAGAAACATAT+AGG + Chr3:30632258-30632277 MsG0380013111.01.T01:CDS 25.0%
! ATTATGGTCCTTAAGATATA+TGG - Chr3:30631179-30631198 None:intergenic 25.0%
! CACCTTAATTAGAAATACAA+AGG - Chr3:30631811-30631830 None:intergenic 25.0%
! GAAATGGAATGAAAATGATA+AGG - Chr3:30631335-30631354 None:intergenic 25.0%
! TATACATCAAACATTAGAAG+AGG + Chr3:30633232-30633251 MsG0380013111.01.T01:intron 25.0%
! TATATACATTCCCTTCAATT+TGG - Chr3:30631029-30631048 None:intergenic 25.0%
! TATATGATATAGAAGAGAGT+TGG - Chr3:30633258-30633277 None:intergenic 25.0%
! TATCTATACACATGAATACA+AGG - Chr3:30632165-30632184 None:intergenic 25.0%
! TGATGTATAAGATAGTCATT+TGG - Chr3:30633221-30633240 None:intergenic 25.0%
! TTACGATTCAGAAACATATA+GGG + Chr3:30632259-30632278 MsG0380013111.01.T01:CDS 25.0%
! TTATAACCGAGAAAACAATT+TGG + Chr3:30631934-30631953 MsG0380013111.01.T01:CDS 25.0%
! TTATGGTCCTTAAGATATAT+GGG - Chr3:30631178-30631197 None:intergenic 25.0%
!! ATGTTTCTGAATCGTAATAT+GGG - Chr3:30632256-30632275 None:intergenic 25.0%
!! CAATTGGATTGAATTTTCAA+AGG + Chr3:30631625-30631644 MsG0380013111.01.T01:intron 25.0%
!! GTCCTTTGTATTTCTAATTA+AGG + Chr3:30631806-30631825 MsG0380013111.01.T01:intron 25.0%
!! TATGTTTCTGAATCGTAATA+TGG - Chr3:30632257-30632276 None:intergenic 25.0%
!! TGATTTTTGTTACAACTTAG+AGG - Chr3:30632958-30632977 None:intergenic 25.0%
!! TTTCTAATTAAGGTGTTAGA+TGG + Chr3:30631816-30631835 MsG0380013111.01.T01:intron 25.0%
!!! AACAAAACGATTTTCAAGAT+TGG + Chr3:30631300-30631319 MsG0380013111.01.T01:intron 25.0%
!!! GGTTAGGTTTTTTATTAATC+TGG - Chr3:30630787-30630806 None:intergenic 25.0%
AATGACAGAAAATAGTAGTG+TGG - Chr3:30633442-30633461 None:intergenic 30.0%
AATGCAACTAATACTGTTAC+TGG + Chr3:30630180-30630199 MsG0380013111.01.T01:intron 30.0%
AATGTCAACAACACTGTAAT+CGG + Chr3:30632824-30632843 MsG0380013111.01.T01:intron 30.0%
ACACATGTTTCTTCTATTAG+TGG - Chr3:30630635-30630654 None:intergenic 30.0%
ACTAGAAGAAGTTTAAGTGT+CGG + Chr3:30631648-30631667 MsG0380013111.01.T01:intron 30.0%
ATCATGAACTCATTATGTCT+TGG - Chr3:30630611-30630630 None:intergenic 30.0%
ATGCAACTAATACTGTTACT+GGG + Chr3:30630181-30630200 MsG0380013111.01.T01:intron 30.0%
ATTCTAGTAGAACAATTGGA+AGG + Chr3:30631900-30631919 MsG0380013111.01.T01:CDS 30.0%
CACAATATAAATCAATGAGC+AGG + Chr3:30633805-30633824 MsG0380013111.01.T01:three_prime_UTR 30.0%
CACATGTTTCTTCTATTAGT+GGG - Chr3:30630634-30630653 None:intergenic 30.0%
GAAATAGAACAAAAAGTTGG+AGG + Chr3:30633580-30633599 MsG0380013111.01.T01:CDS 30.0%
GAGGAAATAGAACAAAAAGT+TGG + Chr3:30633577-30633596 MsG0380013111.01.T01:CDS 30.0%
GTACATAATGTTCACTGTTT+GGG + Chr3:30632100-30632119 MsG0380013111.01.T01:CDS 30.0%
GTATGAATAAATTCACCTCT+TGG - Chr3:30630686-30630705 None:intergenic 30.0%
GTGAATCTAAAGAGATGAAA+TGG - Chr3:30631351-30631370 None:intergenic 30.0%
TACATAATGTTCACTGTTTG+GGG + Chr3:30632101-30632120 MsG0380013111.01.T01:CDS 30.0%
TACGATTCAGAAACATATAG+GGG + Chr3:30632260-30632279 MsG0380013111.01.T01:CDS 30.0%
TATACATTCCCTTCAATTTG+GGG - Chr3:30631027-30631046 None:intergenic 30.0%
TTTAGCAGTAGTTCCAATAT+TGG - Chr3:30630156-30630175 None:intergenic 30.0%
! AAAAAGGAGAAGTACAAACA+TGG + Chr3:30630382-30630401 MsG0380013111.01.T01:intron 30.0%
! AAGATGCCAAATTGTTTTCT+CGG - Chr3:30631943-30631962 None:intergenic 30.0%
! AGTGTTACTAACATTACACT+AGG - Chr3:30632546-30632565 None:intergenic 30.0%
! CATAATAATGAGGTATCACT+TGG - Chr3:30633697-30633716 None:intergenic 30.0%
! TGATGAATGCATCGAAATTT+TGG - Chr3:30630209-30630228 None:intergenic 30.0%
! TTTTGTTACAACTTAGAGGT+TGG - Chr3:30632954-30632973 None:intergenic 30.0%
!! AAAAAGTGCTCAAGTGAAAA+GGG - Chr3:30631208-30631227 None:intergenic 30.0%
!! TTTTTGGTAAGCTAAGAGAA+CGG - Chr3:30630958-30630977 None:intergenic 30.0%
!!! AGGTTTTTTATTAATCTGGC+AGG - Chr3:30630783-30630802 None:intergenic 30.0%
!!! GATATTTTTTTCCACTGAGT+TGG - Chr3:30632854-30632873 None:intergenic 30.0%
!!! TGTTTTATTTTTTGCAGCCT+AGG + Chr3:30631406-30631425 MsG0380013111.01.T01:intron 30.0%
AAACCAACTACACTCCTATT+AGG + Chr3:30630491-30630510 MsG0380013111.01.T01:intron 35.0%
AAACCTTGTAGATACACTAG+AGG + Chr3:30632388-30632407 MsG0380013111.01.T01:intron 35.0%
AATGCAAGATTTCATGGATG+TGG - Chr3:30633472-30633491 None:intergenic 35.0%
AATTAACGCTCACAACTTTC+CGG - Chr3:30630739-30630758 None:intergenic 35.0%
ACAAGATGTACTCAAGTCAA+AGG + Chr3:30630405-30630424 MsG0380013111.01.T01:intron 35.0%
ACTTTAGTAACCCAATAGCA+TGG + Chr3:30632563-30632582 MsG0380013111.01.T01:intron 35.0%
ATCCCATCCCATATATCTTA+AGG + Chr3:30631168-30631187 MsG0380013111.01.T01:intron 35.0%
CATTCATGCACTTGACATAT+TGG - Chr3:30633160-30633179 None:intergenic 35.0%
CTCTAACATTCAACGTAAAG+TGG + Chr3:30632440-30632459 MsG0380013111.01.T01:intron 35.0%
GGCAATTCTAGTAGAACAAT+TGG + Chr3:30631896-30631915 MsG0380013111.01.T01:CDS 35.0%
GGTACATAATGTTCACTGTT+TGG + Chr3:30632099-30632118 MsG0380013111.01.T01:CDS 35.0%
GTCCTTAAGATATATGGGAT+GGG - Chr3:30631173-30631192 None:intergenic 35.0%
GTGAAAAGGGGTTGAAATTA+TGG - Chr3:30631195-30631214 None:intergenic 35.0%
TAACACTCACTTTCCTGTTA+GGG - Chr3:30632487-30632506 None:intergenic 35.0%
TATGTTGACATGACCCTTAA+AGG - Chr3:30632785-30632804 None:intergenic 35.0%
TCCAGCCCGATAATTATATA+TGG - Chr3:30631597-30631616 None:intergenic 35.0%
TCCATATATAATTATCGGGC+TGG + Chr3:30631593-30631612 MsG0380013111.01.T01:intron 35.0%
TCCTGATCTGGAAAAAATCA+AGG + Chr3:30632621-30632640 MsG0380013111.01.T01:intron 35.0%
TCTTAAAGATCACTTCCAAG+AGG + Chr3:30630668-30630687 MsG0380013111.01.T01:intron 35.0%
TGGAAACTGGATATATGAGA+AGG + Chr3:30632301-30632320 MsG0380013111.01.T01:CDS 35.0%
TTCATAGTCTTCCTCTTGTT+CGG - Chr3:30630532-30630551 None:intergenic 35.0%
TTTACCAGATATTCCACTGA+TGG + Chr3:30631875-30631894 MsG0380013111.01.T01:CDS 35.0%
TTTCGATGCATTCATCAACA+AGG + Chr3:30630212-30630231 MsG0380013111.01.T01:intron 35.0%
! AACTGAGTAAATGACCGTTT+TGG + Chr3:30632690-30632709 MsG0380013111.01.T01:intron 35.0%
! ACGAATCTTTGAGTTTGTAC+AGG - Chr3:30630299-30630318 None:intergenic 35.0%
! CTTATTCTTTGGTTCCATGA+AGG + Chr3:30632127-30632146 MsG0380013111.01.T01:CDS 35.0%
! CTTGACATATTGGTGTTTGT+TGG - Chr3:30633150-30633169 None:intergenic 35.0%
! GGAATTTCAGCACGTATTTT+GGG - Chr3:30633421-30633440 None:intergenic 35.0%
! TGGAATTTCAGCACGTATTT+TGG - Chr3:30633422-30633441 None:intergenic 35.0%
! TGTGAGCGTTAATTTTCACA+AGG + Chr3:30630745-30630764 MsG0380013111.01.T01:intron 35.0%
! TTTTATGGTTATGCAGCAAG+AGG + Chr3:30633507-30633526 MsG0380013111.01.T01:intron 35.0%
!! AAAAGTGCTCAAGTGAAAAG+GGG - Chr3:30631207-30631226 None:intergenic 35.0%
!! AAGTTTTGACCCCAAATTGA+AGG + Chr3:30631015-30631034 MsG0380013111.01.T01:intron 35.0%
!! AGTTTTGACCCCAAATTGAA+GGG + Chr3:30631016-30631035 MsG0380013111.01.T01:intron 35.0%
!! CAAAAAGTGCTCAAGTGAAA+AGG - Chr3:30631209-30631228 None:intergenic 35.0%
!! GCACTTTTTGTTCAAAACCA+TGG + Chr3:30631219-30631238 MsG0380013111.01.T01:intron 35.0%
!! TATACGAGTTGGTTGATTGA+GGG - Chr3:30630561-30630580 None:intergenic 35.0%
!! TGGTCAATTGATGGACTAAA+AGG - Chr3:30633677-30633696 None:intergenic 35.0%
!!! GGAAAAGTGTTTTACCTTCA+TGG - Chr3:30632144-30632163 None:intergenic 35.0%
!!! TAGGAGTGTAGTTGGTTTTA+TGG - Chr3:30630489-30630508 None:intergenic 35.0%
AAGAGAACGGAGAGATATCA+AGG - Chr3:30630945-30630964 None:intergenic 40.0%
AAGCGTCTGCAAAGGATTAA+AGG - Chr3:30632079-30632098 None:intergenic 40.0%
ACGATTGAATTCGAATTGCG+CGG + Chr3:30632992-30633011 MsG0380013111.01.T01:intron 40.0%
ACTCCTCTAGTGTATCTACA+AGG - Chr3:30632394-30632413 None:intergenic 40.0%
ACTTGAAGAAGCAGCAAAGA+AGG + Chr3:30633612-30633631 MsG0380013111.01.T01:CDS 40.0%
AGAATATACACGCAAGACAG+GGG - Chr3:30630813-30630832 None:intergenic 40.0%
AGAGAATATACACGCAAGAC+AGG - Chr3:30630815-30630834 None:intergenic 40.0%
AGCACATACATCTCCTTATC+CGG + Chr3:30630717-30630736 MsG0380013111.01.T01:intron 40.0%
AGCGTCTGCAAAGGATTAAA+GGG - Chr3:30632078-30632097 None:intergenic 40.0%
ATACTAGAAGCCTCAAACAG+GGG + Chr3:30632355-30632374 MsG0380013111.01.T01:intron 40.0%
ATATATGGGATGGGATAGAG+TGG - Chr3:30631164-30631183 None:intergenic 40.0%
ATGTATGTGCTTCAGTTGGT+GGG - Chr3:30630708-30630727 None:intergenic 40.0%
ATTGCCATCAGTGGAATATC+TGG - Chr3:30631882-30631901 None:intergenic 40.0%
CAGGAACTTGTAGGTCATAT+GGG - Chr3:30632606-30632625 None:intergenic 40.0%
CTAACACTCACTTTCCTGTT+AGG - Chr3:30632488-30632507 None:intergenic 40.0%
GAAAGAGGGTAGAGTTTGAA+GGG - Chr3:30631434-30631453 None:intergenic 40.0%
GAAGCATGCACATACTTGAA+GGG + Chr3:30631116-30631135 MsG0380013111.01.T01:intron 40.0%
GAGAATATACACGCAAGACA+GGG - Chr3:30630814-30630833 None:intergenic 40.0%
GATACTAGAAGCCTCAAACA+GGG + Chr3:30632354-30632373 MsG0380013111.01.T01:intron 40.0%
GCATCTATGTGCAAAGTGAA+TGG + Chr3:30631852-30631871 MsG0380013111.01.T01:CDS 40.0%
GGTATCACTTGGTCAATTGA+TGG - Chr3:30633686-30633705 None:intergenic 40.0%
GGTCCTTAAGATATATGGGA+TGG - Chr3:30631174-30631193 None:intergenic 40.0%
GGTGAAACCAATGATAGCTT+CGG - Chr3:30631245-30631264 None:intergenic 40.0%
TAATCGGAATTCCAACTCAG+TGG + Chr3:30632840-30632859 MsG0380013111.01.T01:intron 40.0%
TACACCTAAGTGGAAGAGTT+GGG - Chr3:30632913-30632932 None:intergenic 40.0%
TCAGAAACATATAGGGGAGA+TGG + Chr3:30632266-30632285 MsG0380013111.01.T01:CDS 40.0%
TCAGGAACTTGTAGGTCATA+TGG - Chr3:30632607-30632626 None:intergenic 40.0%
TCTACTAGAATTGCCATCAG+TGG - Chr3:30631891-30631910 None:intergenic 40.0%
TCTGGAAAAAATCAAGGCAG+AGG + Chr3:30632627-30632646 MsG0380013111.01.T01:intron 40.0%
TGAAAGAGGGTAGAGTTTGA+AGG - Chr3:30631435-30631454 None:intergenic 40.0%
TGATACTAGAAGCCTCAAAC+AGG + Chr3:30632353-30632372 MsG0380013111.01.T01:intron 40.0%
TGTGCATGCTTCCAACAAAT+TGG - Chr3:30631108-30631127 None:intergenic 40.0%
TTTAATCCTTTGCAGACGCT+TGG + Chr3:30632078-30632097 MsG0380013111.01.T01:intron 40.0%
TTTCCAGATCAGGAACTTGT+AGG - Chr3:30632615-30632634 None:intergenic 40.0%
! ACATGAGTGTTTTCCCTAAC+AGG + Chr3:30632471-30632490 MsG0380013111.01.T01:intron 40.0%
! ATAATTATCGGGCTGGATAG+TGG + Chr3:30631600-30631619 MsG0380013111.01.T01:intron 40.0%
! GTTCCTAATAGGAGTGTAGT+TGG - Chr3:30630497-30630516 None:intergenic 40.0%
! TTACGCTCTTGTTGTACTCT+GGG - Chr3:30630453-30630472 None:intergenic 40.0%
! TTGGCATCGAAAATGTCTTG+TGG - Chr3:30630592-30630611 None:intergenic 40.0%
!! ACTTAGAGGTTGGTAGACAT+AGG - Chr3:30632944-30632963 None:intergenic 40.0%
!! ATACGAGTTGGTTGATTGAG+GGG - Chr3:30630560-30630579 None:intergenic 40.0%
!! CACTAGAGGAGTGTCATTAA+CGG + Chr3:30632402-30632421 MsG0380013111.01.T01:intron 40.0%
!! GTATACGAGTTGGTTGATTG+AGG - Chr3:30630562-30630581 None:intergenic 40.0%
!! GTTTGGGGAGTCTTATTCTT+TGG + Chr3:30632116-30632135 MsG0380013111.01.T01:CDS 40.0%
!!! GCCTTGATTTTTTCCAGATC+AGG - Chr3:30632625-30632644 None:intergenic 40.0%
AATATACACGCAAGACAGGG+GGG - Chr3:30630811-30630830 None:intergenic 45.0%
ACACCTAAGTGGAAGAGTTG+GGG - Chr3:30632912-30632931 None:intergenic 45.0%
ATGAGTAGGCGGCATATGAT+AGG + Chr3:30630898-30630917 MsG0380013111.01.T01:intron 45.0%
CAAACTCTACCCTCTTTCAC+AGG + Chr3:30631436-30631455 MsG0380013111.01.T01:intron 45.0%
CTACACCTAAGTGGAAGAGT+TGG - Chr3:30632914-30632933 None:intergenic 45.0%
CTGCAATGACCTGTGAAAGA+GGG - Chr3:30631448-30631467 None:intergenic 45.0%
GAAACATATAGGGGAGATGG+AGG + Chr3:30632269-30632288 MsG0380013111.01.T01:CDS 45.0%
GAATATACACGCAAGACAGG+GGG - Chr3:30630812-30630831 None:intergenic 45.0%
GATGTATGTGCTTCAGTTGG+TGG - Chr3:30630709-30630728 None:intergenic 45.0%
GCATCGAAAATGTCTTGTGG+CGG - Chr3:30630589-30630608 None:intergenic 45.0%
GGAGATGTATGTGCTTCAGT+TGG - Chr3:30630712-30630731 None:intergenic 45.0%
GGCAAAAGACTACACCTAAG+TGG - Chr3:30632923-30632942 None:intergenic 45.0%
GGTTATGCAGCAAGAGGTTA+TGG + Chr3:30633513-30633532 MsG0380013111.01.T01:intron 45.0%
TATGTACCAAGCGTCTGCAA+AGG - Chr3:30632087-30632106 None:intergenic 45.0%
TCCAACAAATTGGATTCGCG+CGG - Chr3:30631098-30631117 None:intergenic 45.0%
TGAAGAAGCAGCAAAGAAGG+AGG + Chr3:30633615-30633634 MsG0380013111.01.T01:CDS 45.0%
TGACCTACAAGTTCCTGATC+TGG + Chr3:30632609-30632628 MsG0380013111.01.T01:intron 45.0%
TGTGGTTGGGAGTTCCTAAT+AGG - Chr3:30630508-30630527 None:intergenic 45.0%
! CTTACGCTCTTGTTGTACTC+TGG - Chr3:30630454-30630473 None:intergenic 45.0%
! GGAAGCATGCACATACTTGA+AGG + Chr3:30631115-30631134 MsG0380013111.01.T01:intron 45.0%
!! CAGCACGTATTTTGGGAAGA+AGG - Chr3:30633414-30633433 None:intergenic 45.0%
!! TGGCGGATTTGTATACGAGT+TGG - Chr3:30630572-30630591 None:intergenic 45.0%
!! AAAATAAAAATTCTTATATT+TGG + Chr3:30630974-30630993 MsG0380013111.01.T01:intron 5.0%
!! TATAAAATATAAATTGAAAA+TGG - Chr3:30631783-30631802 None:intergenic 5.0%
!!! AATATAAGAATTTTTATTTT+TGG - Chr3:30630974-30630993 None:intergenic 5.0%
!!! TTTCAATTTATATTTTATAA+CGG + Chr3:30631784-30631803 MsG0380013111.01.T01:intron 5.0%
AATCAACTCCTCACGCCACA+GGG - Chr3:30633557-30633576 None:intergenic 50.0%
ACCAATGATAGCTTCGGCCA+TGG - Chr3:30631239-30631258 None:intergenic 50.0%
ACCATGGCCGAAGCTATCAT+TGG + Chr3:30631235-30631254 MsG0380013111.01.T01:intron 50.0%
ACCGCGCGAATCCAATTTGT+TGG + Chr3:30631094-30631113 MsG0380013111.01.T01:intron 50.0%
AGAAGCAGCAAAGAAGGAGG+AGG + Chr3:30633618-30633637 MsG0380013111.01.T01:CDS 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - Chr3:30630847-30630866 None:intergenic 50.0%
CCTCTTTCACAGGTCATTGC+AGG + Chr3:30631446-30631465 MsG0380013111.01.T01:intron 50.0%
CCTGCAATGACCTGTGAAAG+AGG - Chr3:30631449-30631468 None:intergenic 50.0%
CGCTCACAACTTTCCGGATA+AGG - Chr3:30630733-30630752 None:intergenic 50.0%
GAACCCCAACTCTTCCACTT+AGG + Chr3:30632906-30632925 MsG0380013111.01.T01:intron 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG - Chr3:30630848-30630867 None:intergenic 50.0%
GATTTGTGCTCCCCTGTTTG+AGG - Chr3:30632368-30632387 None:intergenic 50.0%
GCAAGAGGTTATGGAAGCAG+AGG + Chr3:30633522-30633541 MsG0380013111.01.T01:intron 50.0%
GCATGCACATACTTGAAGGG+TGG + Chr3:30631119-30631138 MsG0380013111.01.T01:intron 50.0%
GTTCGTTGGGCCATGCTATT+GGG - Chr3:30632576-30632595 None:intergenic 50.0%
TAATCTGGCAGGCTGTTGTG+TGG - Chr3:30630772-30630791 None:intergenic 50.0%
TATAGGGGAGATGGAGGAGA+TGG + Chr3:30632275-30632294 MsG0380013111.01.T01:CDS 50.0%
!! GTAGAGTTTGAAGGGTGCCT+AGG - Chr3:30631426-30631445 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGGG+AGG - Chr3:30630845-30630864 None:intergenic 55.0%
ATATGGGCGCACAGGTTCGT+TGG - Chr3:30632590-30632609 None:intergenic 55.0%
CAATCAACTCCTCACGCCAC+AGG - Chr3:30633558-30633577 None:intergenic 55.0%
CCTCTTGTTCGGCTGTGGTT+GGG - Chr3:30630521-30630540 None:intergenic 55.0%
GAGAGAGAGAGAGAGAGGGA+GGG - Chr3:30630844-30630863 None:intergenic 55.0%
GGTTCGTTGGGCCATGCTAT+TGG - Chr3:30632577-30632596 None:intergenic 55.0%
GTCTTCCTCTTGTTCGGCTG+TGG - Chr3:30630526-30630545 None:intergenic 55.0%
TATGGGCGCACAGGTTCGTT+GGG - Chr3:30632589-30632608 None:intergenic 55.0%
TCCTCTTGTTCGGCTGTGGT+TGG - Chr3:30630522-30630541 None:intergenic 55.0%
TGTAGGTCATATGGGCGCAC+AGG - Chr3:30632598-30632617 None:intergenic 55.0%
! GAGGAGATGGCACTGGAAAC+TGG + Chr3:30632288-30632307 MsG0380013111.01.T01:CDS 55.0%
! GTGGCGTGAGGAGTTGATTG+AGG + Chr3:30633558-30633577 MsG0380013111.01.T01:CDS 55.0%
ATACACGCAAGACAGGGGGG+CGG - Chr3:30630808-30630827 None:intergenic 60.0%
CCCAACCACAGCCGAACAAG+AGG + Chr3:30630518-30630537 MsG0380013111.01.T01:intron 60.0%
GGAGATGGAGGAGATGGCAC+TGG + Chr3:30632281-30632300 MsG0380013111.01.T01:CDS 60.0%
! GGGCTGGATAGTGGCGCAAT+TGG + Chr3:30631609-30631628 MsG0380013111.01.T01:intron 60.0%
CAGAGAAGCCCTGTGGCGTG+AGG + Chr3:30633546-30633565 MsG0380013111.01.T01:CDS 65.0%
CAGAGGCCAGAGAAGCCCTG+TGG + Chr3:30633539-30633558 MsG0380013111.01.T01:CDS 65.0%
CTCACGCCACAGGGCTTCTC+TGG - Chr3:30633548-30633567 None:intergenic 65.0%
CGCAAGACAGGGGGGCGGTT+AGG - Chr3:30630803-30630822 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 30630077 30633880 30630077 ID=MsG0380013111.01;Name=MsG0380013111.01
Chr3 mRNA 30630077 30633880 30630077 ID=MsG0380013111.01.T01;Parent=MsG0380013111.01;Name=MsG0380013111.01.T01;_AED=0.41;_eAED=0.41;_QI=0|0.75|0.8|0.8|1|1|5|226|150
Chr3 exon 30633523 30633880 30633523 ID=MsG0380013111.01.T01:exon:6509;Parent=MsG0380013111.01.T01
Chr3 exon 30632251 30632322 30632251 ID=MsG0380013111.01.T01:exon:6508;Parent=MsG0380013111.01.T01
Chr3 exon 30632093 30632148 30632093 ID=MsG0380013111.01.T01:exon:6507;Parent=MsG0380013111.01.T01
Chr3 exon 30631828 30631987 30631828 ID=MsG0380013111.01.T01:exon:6506;Parent=MsG0380013111.01.T01
Chr3 exon 30630077 30630109 30630077 ID=MsG0380013111.01.T01:exon:6505;Parent=MsG0380013111.01.T01
Chr3 CDS 30630077 30630109 30630077 ID=MsG0380013111.01.T01:cds;Parent=MsG0380013111.01.T01
Chr3 CDS 30631828 30631987 30631828 ID=MsG0380013111.01.T01:cds;Parent=MsG0380013111.01.T01
Chr3 CDS 30632093 30632148 30632093 ID=MsG0380013111.01.T01:cds;Parent=MsG0380013111.01.T01
Chr3 CDS 30632251 30632322 30632251 ID=MsG0380013111.01.T01:cds;Parent=MsG0380013111.01.T01
Chr3 CDS 30633523 30633654 30633523 ID=MsG0380013111.01.T01:cds;Parent=MsG0380013111.01.T01
Chr3 three_prime_UTR 30633655 30633880 30633655 ID=MsG0380013111.01.T01:three_prime_utr;Parent=MsG0380013111.01.T01
Gene Sequence

>MsG0380013111.01.T01

ATGAAATTTGGTGCACCTTATTGTAACGAATTAGTGTTAGATGGTAAGATAAAAAGAGCATCTATGTGCAAAGTGAATGGTTTACCAGATATTCCACTGATGGCAATTCTAGTAGAACAATTGGAAGGACAGAGAGATCTTATAACCGAGAAAACAATTTGGCATCTTAGTGATCAGCAAATAAAGAATGTTTACGCTTGGTACATAATGTTCACTGTTTGGGGAGTCTTATTCTTTGGTTCCATGAAGGACCCATATTACGATTCAGAAACATATAGGGGAGATGGAGGAGATGGCACTGGAAACTGGATATATGAGAAGCAAGAGGTTATGGAAGCAGAGGCCAGAGAAGCCCTGTGGCGTGAGGAGTTGATTGAGGAAATAGAACAAAAAGTTGGAGGGTTGAGAGAACTTGAAGAAGCAGCAAAGAAGGAGGAGGAACTTGTTAAATGA

Protein sequence

>MsG0380013111.01.T01

MKFGAPYCNELVLDGKIKRASMCKVNGLPDIPLMAILVEQLEGQRDLITEKTIWHLSDQQIKNVYAWYIMFTVWGVLFFGSMKDPYYDSETYRGDGGDGTGNWIYEKQEVMEAEAREALWREELIEEIEQKVGGLRELEEAAKKEEELVK*