AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000638.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000638.01.T01 MTR_1g011510 77.949 195 10 3 1 194 1 163 3.06e-83 244
MsG0180000638.01.T01 MTR_2g101380 36.548 197 83 6 6 193 11 174 3.40e-30 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000638.01.T01 AT4G32590 65.132 152 21 2 43 194 54 173 3.38e-53 168
MsG0180000638.01.T01 AT4G32590 63.571 140 25 1 43 182 54 167 2.00e-47 153
MsG0180000638.01.T01 AT4G32590 77.528 89 20 0 43 131 54 142 1.41e-36 125
MsG0180000638.01.T01 AT3G16250 36.702 188 72 6 20 193 30 184 5.57e-28 104
MsG0180000638.01.T01 AT4G32590 80.597 67 13 0 43 109 54 120 5.31e-24 92.0
MsG0180000638.01.T01 AT4G32590 75.510 49 12 0 43 91 54 102 7.40e-21 83.6

Find 74 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTGCGTATTCTCTATTT+TGG 0.189282 1:-9039318 None:intergenic
ACGCAAAGCACATTGAATTA+AGG 0.224593 1:+9039332 MsG0180000638.01.T01:three_prime_UTR
TTTGGCTCTTGAATTGGATT+TGG 0.275795 1:-9039300 None:intergenic
GACCCATCACCCTCTGGTTT+TGG 0.288686 1:-9036627 None:intergenic
CATTTGGTTACTATTCTTTA+CGG 0.288935 1:+9039235 MsG0180000638.01.T01:three_prime_UTR
GAAAATAAATGGTTGGATTC+CGG 0.304867 1:-9036441 None:intergenic
ATGAACTCCAGCTCTATTTC+CGG 0.309865 1:-9036523 None:intergenic
CGCAAAGCACATTGAATTAA+GGG 0.317559 1:+9039333 MsG0180000638.01.T01:three_prime_UTR
TCCGGAGGAGAAGGAGATTC+AGG 0.327786 1:-9036505 None:intergenic
TCGCCGCCGGGGAAAATAAA+TGG 0.351768 1:-9036452 None:intergenic
AATGGTTGGATTCCGGTTAC+CGG 0.353946 1:-9036434 None:intergenic
ATCATTACAACAATCATATA+AGG 0.354434 1:-9039209 None:intergenic
AGAGGGTGATGGGTCGTTTC+CGG 0.362222 1:+9036635 MsG0180000638.01.T01:CDS
AAGTTGATGAACTGCGGTGG+AGG 0.365012 1:+9037494 MsG0180000638.01.T01:CDS
TGCAAGAAAAGTTAGAGTTT+AGG 0.368390 1:+9036323 MsG0180000638.01.T01:five_prime_UTR
CTGGCTTGTCAAACTATTGT+AGG 0.370146 1:+9038191 MsG0180000638.01.T01:CDS
GTAAACAGAAACCTCAATCT+TGG 0.374507 1:+9038165 MsG0180000638.01.T01:CDS
CAGAGGGCGCGAAGCAGAAA+AGG 0.385776 1:+9036366 MsG0180000638.01.T01:five_prime_UTR
TTACCGGCGGTGAGTGGAAC+TGG 0.390189 1:-9036418 None:intergenic
AAATAGAGCTGGAGTTCATT+GGG 0.393000 1:+9036527 MsG0180000638.01.T01:CDS
GAAATAGAGCTGGAGTTCAT+TGG 0.409789 1:+9036526 MsG0180000638.01.T01:CDS
TTCCACTCACCGCCGGTAAC+CGG 0.413919 1:+9036422 MsG0180000638.01.T01:CDS
TCCAAGTGAAGTCAGTTAAC+TGG 0.415358 1:-9036298 None:intergenic
CTTCGGTTGCAGATCATTGA+AGG 0.429966 1:+9037744 MsG0180000638.01.T01:intron
AACTGAGTTCGGTCGCCGCC+GGG 0.457166 1:-9036464 None:intergenic
CCAAGCCAAGTTGCACATCC+TGG 0.457293 1:+9039095 MsG0180000638.01.T01:three_prime_UTR
CAAGCCAGCCTCCAAGATTG+AGG 0.460021 1:-9038176 None:intergenic
GCCTGAATCTCCTTCTCCTC+CGG 0.472889 1:+9036504 MsG0180000638.01.T01:CDS
GCCACGAAACAAACTGAGTT+CGG 0.475849 1:-9036475 None:intergenic
CCAGGATGTGCAACTTGGCT+TGG 0.484687 1:-9039095 None:intergenic
GCCAGTTAACTGACTTCACT+TGG 0.486232 1:+9036297 MsG0180000638.01.T01:five_prime_UTR
GTATGTTACTTCTTCCATTG+AGG 0.486929 1:-9039073 None:intergenic
ACCGAACTCAGTTTGTTTCG+TGG 0.500054 1:+9036474 MsG0180000638.01.T01:CDS
AGCTCTATTTCCGGAGGAGA+AGG 0.500109 1:-9036514 None:intergenic
TTCTCCTCCGGAAATAGAGC+TGG 0.505143 1:+9036516 MsG0180000638.01.T01:CDS
AAACTGAGTTCGGTCGCCGC+CGG 0.506246 1:-9036465 None:intergenic
ATTGCTTTCACTTTATCCAC+CGG 0.506855 1:-9036654 None:intergenic
AAAATCCAGGATGTGCAACT+TGG 0.514003 1:-9039100 None:intergenic
CAGCCAAAACCAGAGGGTGA+TGG 0.518767 1:+9036624 MsG0180000638.01.T01:intron
AGTTGATGAACTGCGGTGGA+GGG 0.519467 1:+9037495 MsG0180000638.01.T01:CDS
TTCCGGTTACCGGCGGTGAG+TGG 0.524356 1:-9036424 None:intergenic
GAAACCTCAATCTTGGAGGC+TGG 0.526252 1:+9038172 MsG0180000638.01.T01:CDS
TTGTTGTAATGATTAACATT+TGG 0.527798 1:+9039219 MsG0180000638.01.T01:three_prime_UTR
ATGCAAACTATATAAAATCC+AGG 0.528301 1:-9039113 None:intergenic
TGAACTAAAATATCTTAAGA+AGG 0.529764 1:+9037797 MsG0180000638.01.T01:CDS
TTGATGAACTGCGGTGGAGG+GGG 0.531421 1:+9037497 MsG0180000638.01.T01:CDS
TTGTTCAAAGGATTCCTCAA+TGG 0.532551 1:+9039059 MsG0180000638.01.T01:CDS
GCGCGAAGCAGAAAAGGAAA+TGG 0.533002 1:+9036372 MsG0180000638.01.T01:exon
GTTGATGAACTGCGGTGGAG+GGG 0.538567 1:+9037496 MsG0180000638.01.T01:CDS
AACAGAAACCTCAATCTTGG+AGG 0.546688 1:+9038168 MsG0180000638.01.T01:CDS
CACACACAAGACACAACAGA+GGG 0.547327 1:+9036350 MsG0180000638.01.T01:five_prime_UTR
AGCCAAAACCAGAGGGTGAT+GGG 0.553792 1:+9036625 MsG0180000638.01.T01:intron
TGGCTTGTCAAACTATTGTA+GGG 0.560652 1:+9038192 MsG0180000638.01.T01:CDS
GTTGCAGATCATTGAAGGAA+AGG 0.566306 1:+9037749 MsG0180000638.01.T01:intron
GGAAACGACCCATCACCCTC+TGG 0.569559 1:-9036633 None:intergenic
CGCCGGGGAAAATAAATGGT+TGG 0.580484 1:-9036448 None:intergenic
TAAGCGGAGAGAAGCTGATG+AGG 0.586456 1:+9036676 MsG0180000638.01.T01:CDS
GGGTGATGGGTCGTTTCCGG+TGG 0.591158 1:+9036638 MsG0180000638.01.T01:CDS
GTAGGGAACAAAGAAAACTC+TGG 0.594992 1:+9038209 MsG0180000638.01.T01:CDS
ACTGAGTTCGGTCGCCGCCG+GGG 0.605244 1:-9036463 None:intergenic
ACACCAGTTCCACTCACCGC+CGG 0.614691 1:+9036415 MsG0180000638.01.T01:CDS
CTGCGGAACTTGCATAGTCG+AGG 0.615080 1:+9037523 MsG0180000638.01.T01:CDS
GAACAAAGAAAACTCTGGCA+AGG 0.616661 1:+9038214 MsG0180000638.01.T01:CDS
ACACACACAAGACACAACAG+AGG 0.631902 1:+9036349 MsG0180000638.01.T01:five_prime_UTR
GGGAAGTTGATGAACTGCGG+TGG 0.636301 1:+9037491 MsG0180000638.01.T01:CDS
TTGATTGCAGCCAAAACCAG+AGG 0.640341 1:+9036617 MsG0180000638.01.T01:intron
TGATTGCAGCCAAAACCAGA+GGG 0.640990 1:+9036618 MsG0180000638.01.T01:intron
AACTCCAGCTCTATTTCCGG+AGG 0.644295 1:-9036520 None:intergenic
GGTTGGATTCCGGTTACCGG+CGG 0.656174 1:-9036431 None:intergenic
GCTGATGAGGAGCATCATGT+CGG 0.664064 1:+9036689 MsG0180000638.01.T01:CDS
GATAAAGTGAAAGCAATAAG+CGG 0.697309 1:+9036660 MsG0180000638.01.T01:CDS
AATAGAGCTGGAGTTCATTG+GGG 0.704244 1:+9036528 MsG0180000638.01.T01:CDS
TGGTATGATACATACATACG+TGG 0.709659 1:-9036733 None:intergenic
CAGGGGAAGTTGATGAACTG+CGG 0.716036 1:+9037488 MsG0180000638.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTCTTCTATAAAAAAAA+AGG + Chr1:9037046-9037065 MsG0180000638.01.T01:intron 10.0%
!!! ATTTTTTTAGAAGATATAAA+AGG + Chr1:9037391-9037410 MsG0180000638.01.T01:intron 10.0%
!!! GAATAATTTTAGATATTTTT+TGG + Chr1:9037668-9037687 MsG0180000638.01.T01:intron 10.0%
!!! TTTTATATCTTCTAAAAAAA+TGG - Chr1:9037392-9037411 None:intergenic 10.0%
!! ATTAGTTAATTTCAAAATCT+TGG - Chr1:9038126-9038145 None:intergenic 15.0%
!! TCTAATAATAACCATAAAAA+TGG - Chr1:9037586-9037605 None:intergenic 15.0%
!!! TTTTACTATGACTATTATTA+AGG - Chr1:9036988-9037007 None:intergenic 15.0%
!! AAATAGACTTAATTCATAGA+AGG - Chr1:9038803-9038822 None:intergenic 20.0%
!! AACAACTTTCAGTATATATA+TGG + Chr1:9038678-9038697 MsG0180000638.01.T01:intron 20.0%
!! AAGGTTAAAAGAGTTAAAAA+CGG - Chr1:9038033-9038052 None:intergenic 20.0%
!! ATATATTATGCTTTCTATGA+TGG + Chr1:9039024-9039043 MsG0180000638.01.T01:intron 20.0%
!! ATCATTACAACAATCATATA+AGG - Chr1:9039212-9039231 None:intergenic 20.0%
!! ATGATATGATAATTAAAGCA+TGG + Chr1:9038836-9038855 MsG0180000638.01.T01:intron 20.0%
!! GATTCTTCTTACTAATAATT+TGG + Chr1:9037316-9037335 MsG0180000638.01.T01:intron 20.0%
!! TATATTATGCTTTCTATGAT+GGG + Chr1:9039025-9039044 MsG0180000638.01.T01:intron 20.0%
!! TCAATTAATAACAATGAGTT+GGG - Chr1:9037025-9037044 None:intergenic 20.0%
!! TGAACTAAAATATCTTAAGA+AGG + Chr1:9037797-9037816 MsG0180000638.01.T01:CDS 20.0%
!! TTAATTATCATATCATCCAA+GGG - Chr1:9038832-9038851 None:intergenic 20.0%
!! TTATGAAACTTGATGAAATA+TGG - Chr1:9038722-9038741 None:intergenic 20.0%
!! TTCAATTAATAACAATGAGT+TGG - Chr1:9037026-9037045 None:intergenic 20.0%
!! TTGTTGTAATGATTAACATT+TGG + Chr1:9039219-9039238 MsG0180000638.01.T01:three_prime_UTR 20.0%
!! TTTAAATATGAACGTTACAT+TGG + Chr1:9037155-9037174 MsG0180000638.01.T01:intron 20.0%
!! TTTAATTATCATATCATCCA+AGG - Chr1:9038833-9038852 None:intergenic 20.0%
!!! ATTCTAAAATTAATCAAGAC+TGG + Chr1:9038969-9038988 MsG0180000638.01.T01:intron 20.0%
!!! ATTTTAACACATTGTTTTCA+AGG + Chr1:9037906-9037925 MsG0180000638.01.T01:intron 20.0%
!!! TAATTTTAACTGTTACAACA+GGG + Chr1:9037470-9037489 MsG0180000638.01.T01:intron 20.0%
! ACTAAAGAGTTCATTAAAGA+TGG + Chr1:9037254-9037273 MsG0180000638.01.T01:intron 25.0%
! AGAACATTGAAACTAGAATA+AGG + Chr1:9038541-9038560 MsG0180000638.01.T01:intron 25.0%
! ATGCAAACTATATAAAATCC+AGG - Chr1:9039116-9039135 None:intergenic 25.0%
! ATTAAGTACTATAGTGCTAA+TGG + Chr1:9038997-9039016 MsG0180000638.01.T01:intron 25.0%
! CATTTGGTTACTATTCTTTA+CGG + Chr1:9039235-9039254 MsG0180000638.01.T01:three_prime_UTR 25.0%
! GGTGAATACTTATATCAAAT+AGG - Chr1:9038012-9038031 None:intergenic 25.0%
! TAAAATGCTTAGCACATTAT+TGG + Chr1:9037878-9037897 MsG0180000638.01.T01:intron 25.0%
! TTGAAGATAACCATACAAAT+TGG - Chr1:9038930-9038949 None:intergenic 25.0%
!! AAACTTAGTAAAAAGTGTAC+CGG - Chr1:9038631-9038650 None:intergenic 25.0%
!! AAAGAGAAAAAGTACATGTA+TGG - Chr1:9036778-9036797 None:intergenic 25.0%
!! CAACTAAGAACAAATTTTGA+GGG + Chr1:9038459-9038478 MsG0180000638.01.T01:intron 25.0%
!! GCTAAGCATTTTACTATTTT+CGG - Chr1:9037871-9037890 None:intergenic 25.0%
!! TAGGTTTTCAGATTAATCAT+CGG + Chr1:9037282-9037301 MsG0180000638.01.T01:intron 25.0%
!! TCAACTAAGAACAAATTTTG+AGG + Chr1:9038458-9038477 MsG0180000638.01.T01:intron 25.0%
!! TCTAAAAAAATGGATCCTTT+TGG - Chr1:9037382-9037401 None:intergenic 25.0%
!!! AATTTTAACTGTTACAACAG+GGG + Chr1:9037471-9037490 MsG0180000638.01.T01:intron 25.0%
!!! ACTAACATGATCCATTTTTA+TGG + Chr1:9037572-9037591 MsG0180000638.01.T01:intron 25.0%
!!! ACTTTTTACTAAGTTTGTTC+CGG + Chr1:9038635-9038654 MsG0180000638.01.T01:intron 25.0%
!!! CTAATTTTAACTGTTACAAC+AGG + Chr1:9037469-9037488 MsG0180000638.01.T01:intron 25.0%
!!! TTAACTAATGTTTTGAGCTT+TGG + Chr1:9038137-9038156 MsG0180000638.01.T01:CDS 25.0%
AAAGTACATGTATGGTTGAT+TGG - Chr1:9036770-9036789 None:intergenic 30.0%
AATCATGTAGTAGCAATTAG+AGG - Chr1:9037724-9037743 None:intergenic 30.0%
AATGCAAACAAAAGTGACTA+CGG + Chr1:9038896-9038915 MsG0180000638.01.T01:intron 30.0%
ATTGCTACTACATGATTCTT+CGG + Chr1:9037727-9037746 MsG0180000638.01.T01:intron 30.0%
ATTGTTCCTTTCATATTGTG+AGG + Chr1:9038090-9038109 MsG0180000638.01.T01:intron 30.0%
CTCACATTATTGAGAATTGA+AGG + Chr1:9038386-9038405 MsG0180000638.01.T01:intron 30.0%
CTTATATGTAACTATCACTC+CGG - Chr1:9038334-9038353 None:intergenic 30.0%
GAAAATAAATGGTTGGATTC+CGG - Chr1:9036444-9036463 None:intergenic 30.0%
GAACTCAGATATCTTAATCA+AGG + Chr1:9037191-9037210 MsG0180000638.01.T01:intron 30.0%
GATAAAGTGAAAGCAATAAG+CGG + Chr1:9036660-9036679 MsG0180000638.01.T01:CDS 30.0%
GATATTATAACACTTCCCAT+TGG - Chr1:9037940-9037959 None:intergenic 30.0%
GCGATTAATCTCTTAAGTTA+TGG + Chr1:9036874-9036893 MsG0180000638.01.T01:intron 30.0%
TATCTGAGTTCAGTTTCATT+CGG - Chr1:9037182-9037201 None:intergenic 30.0%
TGAAGGTAGTTTATATACAC+CGG + Chr1:9038403-9038422 MsG0180000638.01.T01:intron 30.0%
TGCAAGAAAAGTTAGAGTTT+AGG + Chr1:9036323-9036342 MsG0180000638.01.T01:five_prime_UTR 30.0%
TTGTTCCTTTCATATTGTGA+GGG + Chr1:9038091-9038110 MsG0180000638.01.T01:intron 30.0%
! GAAAGGAACTTTTGAATGAA+AGG + Chr1:9037766-9037785 MsG0180000638.01.T01:CDS 30.0%
!! TTTCAACTGATTTGAGCTAA+AGG - Chr1:9038052-9038071 None:intergenic 30.0%
!!! ATCCTTTTGGTTCTTGATAT+TGG - Chr1:9037369-9037388 None:intergenic 30.0%
!!! TAGTCACTTTTGTTTGCATT+AGG - Chr1:9038896-9038915 None:intergenic 30.0%
AAATAGAGCTGGAGTTCATT+GGG + Chr1:9036527-9036546 MsG0180000638.01.T01:CDS 35.0%
AAGTCTATTTACTTGACCCT+TGG + Chr1:9038813-9038832 MsG0180000638.01.T01:intron 35.0%
ACGCAAAGCACATTGAATTA+AGG + Chr1:9039332-9039351 MsG0180000638.01.T01:three_prime_UTR 35.0%
ATGGATGAGAAAATGTGGTT+GGG + Chr1:9037231-9037250 MsG0180000638.01.T01:intron 35.0%
ATTGCTTTCACTTTATCCAC+CGG - Chr1:9036657-9036676 None:intergenic 35.0%
CGCAAAGCACATTGAATTAA+GGG + Chr1:9039333-9039352 MsG0180000638.01.T01:three_prime_UTR 35.0%
GCTATATCTCATGTTTAGTG+TGG + Chr1:9038297-9038316 MsG0180000638.01.T01:intron 35.0%
GGAATCTTCTCCAATTTGTA+TGG + Chr1:9038917-9038936 MsG0180000638.01.T01:intron 35.0%
GGCTTACACAATACTCAATA+CGG + Chr1:9038480-9038499 MsG0180000638.01.T01:intron 35.0%
GTAAACAGAAACCTCAATCT+TGG + Chr1:9038165-9038184 MsG0180000638.01.T01:CDS 35.0%
GTTGATTGGAATTAAGCATG+TGG - Chr1:9036756-9036775 None:intergenic 35.0%
TCAGTATGACTATGTTCTCT+TGG + Chr1:9037618-9037637 MsG0180000638.01.T01:intron 35.0%
TGCCAATATCAAGAACCAAA+AGG + Chr1:9037364-9037383 MsG0180000638.01.T01:intron 35.0%
TGGTATGATACATACATACG+TGG - Chr1:9036736-9036755 None:intergenic 35.0%
TTCATTAAAGATGGTCAGCT+AGG + Chr1:9037263-9037282 MsG0180000638.01.T01:intron 35.0%
TTCTCATGGATGAGAAAATG+TGG + Chr1:9037226-9037245 MsG0180000638.01.T01:intron 35.0%
TTGTTCAAAGGATTCCTCAA+TGG + Chr1:9039059-9039078 MsG0180000638.01.T01:CDS 35.0%
! GCTTTGCGTATTCTCTATTT+TGG - Chr1:9039321-9039340 None:intergenic 35.0%
! GGTCTAAGATTAGATTCTCA+TGG + Chr1:9037212-9037231 MsG0180000638.01.T01:intron 35.0%
! GTATGTTACTTCTTCCATTG+AGG - Chr1:9039076-9039095 None:intergenic 35.0%
! TGGCTTGTCAAACTATTGTA+GGG + Chr1:9038192-9038211 MsG0180000638.01.T01:CDS 35.0%
!! ACATTGTTTTCAAGGTTCCT+AGG + Chr1:9037914-9037933 MsG0180000638.01.T01:intron 35.0%
!! ATCCAACCATTTATTTTCCC+CGG + Chr1:9036446-9036465 MsG0180000638.01.T01:CDS 35.0%
!! TTTGGCTCTTGAATTGGATT+TGG - Chr1:9039303-9039322 None:intergenic 35.0%
!!! CTCTATTTTGGCTCTTGAAT+TGG - Chr1:9039309-9039328 None:intergenic 35.0%
!!! GCTTTTAGGTTGTTGTTCAA+AGG + Chr1:9039047-9039066 MsG0180000638.01.T01:intron 35.0%
AAAATCCAGGATGTGCAACT+TGG - Chr1:9039103-9039122 None:intergenic 40.0%
AAAGTGGTGTCTCAGATTTG+AGG + Chr1:9038516-9038535 MsG0180000638.01.T01:intron 40.0%
AACAGAAACCTCAATCTTGG+AGG + Chr1:9038168-9038187 MsG0180000638.01.T01:CDS 40.0%
AATAGAGCTGGAGTTCATTG+GGG + Chr1:9036528-9036547 MsG0180000638.01.T01:CDS 40.0%
ATGAACTCCAGCTCTATTTC+CGG - Chr1:9036526-9036545 None:intergenic 40.0%
CATGGATGAGAAAATGTGGT+TGG + Chr1:9037230-9037249 MsG0180000638.01.T01:intron 40.0%
CATGTTTAGTGTGGCAAATG+TGG + Chr1:9038306-9038325 MsG0180000638.01.T01:intron 40.0%
CGGACAATACCTTAGAAAAG+TGG + Chr1:9038500-9038519 MsG0180000638.01.T01:intron 40.0%
CTTAAGAGATTAATCGCGAG+TGG - Chr1:9036871-9036890 None:intergenic 40.0%
GAAATAGAGCTGGAGTTCAT+TGG + Chr1:9036526-9036545 MsG0180000638.01.T01:CDS 40.0%
GAACAAAGAAAACTCTGGCA+AGG + Chr1:9038214-9038233 MsG0180000638.01.T01:CDS 40.0%
GTAGGGAACAAAGAAAACTC+TGG + Chr1:9038209-9038228 MsG0180000638.01.T01:CDS 40.0%
GTTGCAGATCATTGAAGGAA+AGG + Chr1:9037749-9037768 MsG0180000638.01.T01:intron 40.0%
TACCACCCTCACAATATGAA+AGG - Chr1:9038099-9038118 None:intergenic 40.0%
TCCAAGTGAAGTCAGTTAAC+TGG - Chr1:9036301-9036320 None:intergenic 40.0%
TTCCTTTCATATTGTGAGGG+TGG + Chr1:9038094-9038113 MsG0180000638.01.T01:intron 40.0%
! CTGGCTTGTCAAACTATTGT+AGG + Chr1:9038191-9038210 MsG0180000638.01.T01:CDS 40.0%
! GAGTAATGAGTTGAAGAGAC+CGG - Chr1:9038425-9038444 None:intergenic 40.0%
! TTACTAAGTTTGTTCCGGTG+TGG + Chr1:9038640-9038659 MsG0180000638.01.T01:intron 40.0%
! TTTTAGCCCCATAGGCTAAA+GGG + Chr1:9038594-9038613 MsG0180000638.01.T01:intron 40.0%
!! TCTGAGACACCACTTTTCTA+AGG - Chr1:9038512-9038531 None:intergenic 40.0%
!!! GCTTTCTATGATGGGCTTTT+AGG + Chr1:9039033-9039052 MsG0180000638.01.T01:intron 40.0%
AATAGCCTCCCTTTAGCCTA+TGG - Chr1:9038605-9038624 None:intergenic 45.0%
AATGGTTGGATTCCGGTTAC+CGG - Chr1:9036437-9036456 None:intergenic 45.0%
ACACACACAAGACACAACAG+AGG + Chr1:9036349-9036368 MsG0180000638.01.T01:five_prime_UTR 45.0%
ATAGCCTCCCTTTAGCCTAT+GGG - Chr1:9038604-9038623 None:intergenic 45.0%
CACACACAAGACACAACAGA+GGG + Chr1:9036350-9036369 MsG0180000638.01.T01:five_prime_UTR 45.0%
CTAAAGGGAGGCTATTGTTC+CGG + Chr1:9038609-9038628 MsG0180000638.01.T01:intron 45.0%
CTTCGGTTGCAGATCATTGA+AGG + Chr1:9037744-9037763 MsG0180000638.01.T01:intron 45.0%
CTTTAGCCTATGGGGCTAAA+AGG - Chr1:9038595-9038614 None:intergenic 45.0%
GCCACGAAACAAACTGAGTT+CGG - Chr1:9036478-9036497 None:intergenic 45.0%
TGATTGCAGCCAAAACCAGA+GGG + Chr1:9036618-9036637 MsG0180000638.01.T01:intron 45.0%
TTCAAGGTTCCTAGGCCAAT+GGG + Chr1:9037922-9037941 MsG0180000638.01.T01:intron 45.0%
TTGATTGCAGCCAAAACCAG+AGG + Chr1:9036617-9036636 MsG0180000638.01.T01:intron 45.0%
TTTCAAGGTTCCTAGGCCAA+TGG + Chr1:9037921-9037940 MsG0180000638.01.T01:intron 45.0%
! ACCGAACTCAGTTTGTTTCG+TGG + Chr1:9036474-9036493 MsG0180000638.01.T01:CDS 45.0%
! ATAACACTTCCCATTGGCCT+AGG - Chr1:9037934-9037953 None:intergenic 45.0%
! CTTTTAGCCCCATAGGCTAA+AGG + Chr1:9038593-9038612 MsG0180000638.01.T01:intron 45.0%
! GCCAGTTAACTGACTTCACT+TGG + Chr1:9036297-9036316 MsG0180000638.01.T01:five_prime_UTR 45.0%
!! CAACCATTTATTTTCCCCGG+CGG + Chr1:9036449-9036468 MsG0180000638.01.T01:CDS 45.0%
!!! AATTATTTCTTAAATAAATT+CGG + Chr1:9036836-9036855 MsG0180000638.01.T01:intron 5.0%
AACTCCAGCTCTATTTCCGG+AGG - Chr1:9036523-9036542 None:intergenic 50.0%
AGCCAAAACCAGAGGGTGAT+GGG + Chr1:9036625-9036644 MsG0180000638.01.T01:intron 50.0%
AGCTCTATTTCCGGAGGAGA+AGG - Chr1:9036517-9036536 None:intergenic 50.0%
CGCCGGGGAAAATAAATGGT+TGG - Chr1:9036451-9036470 None:intergenic 50.0%
GAAACCTCAATCTTGGAGGC+TGG + Chr1:9038172-9038191 MsG0180000638.01.T01:CDS 50.0%
GCGCGAAGCAGAAAAGGAAA+TGG + Chr1:9036372-9036391 MsG0180000638.01.T01:exon 50.0%
TAAGCGGAGAGAAGCTGATG+AGG + Chr1:9036676-9036695 MsG0180000638.01.T01:CDS 50.0%
TAGCCTCCCTTTAGCCTATG+GGG - Chr1:9038603-9038622 None:intergenic 50.0%
TAGTGTGGCAAATGTGGTGC+CGG + Chr1:9038312-9038331 MsG0180000638.01.T01:intron 50.0%
TTCTCCTCCGGAAATAGAGC+TGG + Chr1:9036516-9036535 MsG0180000638.01.T01:CDS 50.0%
! CTAAGTTTGTTCCGGTGTGG+CGG + Chr1:9038643-9038662 MsG0180000638.01.T01:intron 50.0%
! GATAGGCCTTTTAGCCCCAT+AGG + Chr1:9038586-9038605 MsG0180000638.01.T01:intron 50.0%
!! AAGTTGATGAACTGCGGTGG+AGG + Chr1:9037494-9037513 MsG0180000638.01.T01:CDS 50.0%
!! AGTTGATGAACTGCGGTGGA+GGG + Chr1:9037495-9037514 MsG0180000638.01.T01:CDS 50.0%
!! CAGGGGAAGTTGATGAACTG+CGG + Chr1:9037488-9037507 MsG0180000638.01.T01:intron 50.0%
!! GCTGATGAGGAGCATCATGT+CGG + Chr1:9036689-9036708 MsG0180000638.01.T01:CDS 50.0%
AGGACATAAGCCACACGCGA+TGG + Chr1:9038561-9038580 MsG0180000638.01.T01:intron 55.0%
CAAGCCAGCCTCCAAGATTG+AGG - Chr1:9038179-9038198 None:intergenic 55.0%
CAGCCAAAACCAGAGGGTGA+TGG + Chr1:9036624-9036643 MsG0180000638.01.T01:intron 55.0%
CCAAGCCAAGTTGCACATCC+TGG + Chr1:9039095-9039114 MsG0180000638.01.T01:three_prime_UTR 55.0%
CCAGGATGTGCAACTTGGCT+TGG - Chr1:9039098-9039117 None:intergenic 55.0%
CTGCGGAACTTGCATAGTCG+AGG + Chr1:9037523-9037542 MsG0180000638.01.T01:CDS 55.0%
GCCTGAATCTCCTTCTCCTC+CGG + Chr1:9036504-9036523 MsG0180000638.01.T01:CDS 55.0%
TAGCCCCATAGGCTAAAGGG+AGG + Chr1:9038597-9038616 MsG0180000638.01.T01:intron 55.0%
TCCGGAGGAGAAGGAGATTC+AGG - Chr1:9036508-9036527 None:intergenic 55.0%
TCGCCGCCGGGGAAAATAAA+TGG - Chr1:9036455-9036474 None:intergenic 55.0%
TTGATGAACTGCGGTGGAGG+GGG + Chr1:9037497-9037516 MsG0180000638.01.T01:CDS 55.0%
! GTTGATGAACTGCGGTGGAG+GGG + Chr1:9037496-9037515 MsG0180000638.01.T01:CDS 55.0%
!! AGAGGGTGATGGGTCGTTTC+CGG + Chr1:9036635-9036654 MsG0180000638.01.T01:CDS 55.0%
!! GACCCATCACCCTCTGGTTT+TGG - Chr1:9036630-9036649 None:intergenic 55.0%
!! GGGAAGTTGATGAACTGCGG+TGG + Chr1:9037491-9037510 MsG0180000638.01.T01:CDS 55.0%
AAACTGAGTTCGGTCGCCGC+CGG - Chr1:9036468-9036487 None:intergenic 60.0%
ACACCAGTTCCACTCACCGC+CGG + Chr1:9036415-9036434 MsG0180000638.01.T01:CDS 60.0%
AGCCACACGCGATGGTCGAT+AGG + Chr1:9038569-9038588 MsG0180000638.01.T01:intron 60.0%
GGAAACGACCCATCACCCTC+TGG - Chr1:9036636-9036655 None:intergenic 60.0%
GGTTGGATTCCGGTTACCGG+CGG - Chr1:9036434-9036453 None:intergenic 60.0%
TGAACTCGAGTCCGCCACAC+CGG - Chr1:9038657-9038676 None:intergenic 60.0%
TTACCGGCGGTGAGTGGAAC+TGG - Chr1:9036421-9036440 None:intergenic 60.0%
TTCCACTCACCGCCGGTAAC+CGG + Chr1:9036422-9036441 MsG0180000638.01.T01:CDS 60.0%
! CAGAGGGCGCGAAGCAGAAA+AGG + Chr1:9036366-9036385 MsG0180000638.01.T01:five_prime_UTR 60.0%
AACTGAGTTCGGTCGCCGCC+GGG - Chr1:9036467-9036486 None:intergenic 65.0%
GGCCTATCGACCATCGCGTG+TGG - Chr1:9038574-9038593 None:intergenic 65.0%
TTCCGGTTACCGGCGGTGAG+TGG - Chr1:9036427-9036446 None:intergenic 65.0%
!! GGGTGATGGGTCGTTTCCGG+TGG + Chr1:9036638-9036657 MsG0180000638.01.T01:CDS 65.0%
ACTGAGTTCGGTCGCCGCCG+GGG - Chr1:9036466-9036485 None:intergenic 70.0%
TGCGGTGGAGGGGGTAGCTG+CGG + Chr1:9037506-9037525 MsG0180000638.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 9036286 9039355 9036286 ID=MsG0180000638.01;Name=MsG0180000638.01
Chr1 mRNA 9036286 9039355 9036286 ID=MsG0180000638.01.T01;Parent=MsG0180000638.01;Name=MsG0180000638.01.T01;_AED=0.36;_eAED=0.41;_QI=105|0.6|0.66|1|0|0|6|265|194
Chr1 exon 9039055 9039355 9039055 ID=MsG0180000638.01.T01:exon:2111;Parent=MsG0180000638.01.T01
Chr1 exon 9038128 9038253 9038128 ID=MsG0180000638.01.T01:exon:2110;Parent=MsG0180000638.01.T01
Chr1 exon 9037756 9037851 9037756 ID=MsG0180000638.01.T01:exon:2109;Parent=MsG0180000638.01.T01
Chr1 exon 9037491 9037544 9037491 ID=MsG0180000638.01.T01:exon:2108;Parent=MsG0180000638.01.T01
Chr1 exon 9036627 9036740 9036627 ID=MsG0180000638.01.T01:exon:2107;Parent=MsG0180000638.01.T01
Chr1 exon 9036286 9036549 9036286 ID=MsG0180000638.01.T01:exon:2106;Parent=MsG0180000638.01.T01
Chr1 five_prime_UTR 9036286 9036390 9036286 ID=MsG0180000638.01.T01:five_prime_utr;Parent=MsG0180000638.01.T01
Chr1 CDS 9036391 9036549 9036391 ID=MsG0180000638.01.T01:cds;Parent=MsG0180000638.01.T01
Chr1 CDS 9036627 9036740 9036627 ID=MsG0180000638.01.T01:cds;Parent=MsG0180000638.01.T01
Chr1 CDS 9037491 9037544 9037491 ID=MsG0180000638.01.T01:cds;Parent=MsG0180000638.01.T01
Chr1 CDS 9037756 9037851 9037756 ID=MsG0180000638.01.T01:cds;Parent=MsG0180000638.01.T01
Chr1 CDS 9038128 9038253 9038128 ID=MsG0180000638.01.T01:cds;Parent=MsG0180000638.01.T01
Chr1 CDS 9039055 9039090 9039055 ID=MsG0180000638.01.T01:cds;Parent=MsG0180000638.01.T01
Chr1 three_prime_UTR 9039091 9039355 9039091 ID=MsG0180000638.01.T01:three_prime_utr;Parent=MsG0180000638.01.T01
Gene Sequence

>MsG0180000638.01.T01

ATGGCTTCTATGAACAATATATTCACACCAGTTCCACTCACCGCCGGTAACCGGAATCCAACCATTTATTTTCCCCGGCGGCGACCGAACTCAGTTTGTTTCGTGGCAAATTCGCCTGAATCTCCTTCTCCTCCGGAAATAGAGCTGGAGTTCATTGGGCCAAAACCAGAGGGTGATGGGTCGTTTCCGGTGGATAAAGTGAAAGCAATAAGCGGAGAGAAGCTGATGAGGAGCATCATGTCGGATAATAAGATTGAGCTTTATGCCACGTATGGGAAGTTGATGAACTGCGGTGGAGGGGGTAGCTGCGGAACTTGCATAGTCGAGATCATTGAAGGAAAGGAACTTTTGAATGAAAGGACAAATACTGAACTAAAATATCTTAAGAAGGCATGTTCTCTAACTTTGTACTTAATTTTGCTTATTTTGAAATTAACTAATGTTTTGAGCTTTGGCATTTGTAAACAGAAACCTCAATCTTGGAGGCTGGCTTGTCAAACTATTGTAGGGAACAAAGAAAACTCTGGCAAGGTATCTTTCAAAATAATTGTTGTTGTTCAAAGGATTCCTCAATGGAAGAAGTAA

Protein sequence

>MsG0180000638.01.T01

MASMNNIFTPVPLTAGNRNPTIYFPRRRPNSVCFVANSPESPSPPEIELEFIGPKPEGDGSFPVDKVKAISGEKLMRSIMSDNKIELYATYGKLMNCGGGGSCGTCIVEIIEGKELLNERTNTELKYLKKACSLTLYLILLILKLTNVLSFGICKQKPQSWRLACQTIVGNKENSGKVSFKIIVVVQRIPQWKK*