AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1357710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1357710 MtrunA17_Chr7g0268601 85.165 182 21 2 1 176 1 182 7.00e-99 283
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1357710 AT4G03150.1 60.000 130 50 1 43 170 52 181 5.79e-52 164

Find 65 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGGGTTACTTTACATAAA+TGG 0.225005 tig0016170:-2501 Msa1357710:CDS
TTCTCATTAAACTCTTTAAC+TGG 0.232983 tig0016170:+2076 Msa1357710:intergenic
ATTGGAAACCATTTCTTATA+AGG 0.243835 tig0016170:-2350 Msa1357710:CDS
TGGAGCTATGAAATTCAATT+TGG 0.253108 tig0016170:+2250 Msa1357710:intergenic
GTTCAATCCGCTGCGCGATT+AGG 0.295554 tig0016170:+2284 Msa1357710:intergenic
ACTTGGTCGTCATCGGGTTC+TGG 0.304693 tig0016170:+2956 Msa1357710:intergenic
CAAAGAATTGTAGTAGGATT+TGG 0.316745 tig0016170:+2423 Msa1357710:intergenic
GAGGAGGAAGATGGCGTGAA+TGG 0.349139 tig0016170:+3079 Msa1357710:intergenic
AAAACTTTCCTTATAAGAAA+TGG 0.350129 tig0016170:+2342 Msa1357710:intergenic
ATTAGGAATCAGAGTGGCTT+AGG 0.355001 tig0016170:-2519 Msa1357710:intron
GAGTGTAACGGAGGAGGAGG+AGG 0.364201 tig0016170:+3054 Msa1357710:intergenic
TGTAACGGAGGAGGAGGAGG+AGG 0.369051 tig0016170:+3057 Msa1357710:intergenic
ATCTCCACATTTGTTTCCTC+AGG 0.391134 tig0016170:+2460 Msa1357710:intergenic
TCTGAACGAATGGCTCATAT+TGG 0.391371 tig0016170:-3237 Msa1357710:five_prime_UTR
TTTCATAGCTCCACATGGTT+TGG 0.395953 tig0016170:-2240 Msa1357710:three_prime_UTR
GTTGAATATGGCACGTGAAT+TGG 0.399859 tig0016170:-2368 Msa1357710:CDS
GTCTTCAACTTGGTCGTCAT+CGG 0.400136 tig0016170:+2949 Msa1357710:intergenic
TCGTCATCGGGTTCTGGAAA+TGG 0.412464 tig0016170:+2962 Msa1357710:intergenic
GTGAAGAGGAAGCGTGTTGA+TGG 0.422901 tig0016170:+3026 Msa1357710:intergenic
GGTGAGTGTAACGGAGGAGG+AGG 0.437081 tig0016170:+3051 Msa1357710:intergenic
GATAGAATGATGGGATGAAC+TGG 0.437699 tig0016170:+3118 Msa1357710:intergenic
AGGAGGAAGATGGCGTGAAT+GGG 0.452880 tig0016170:+3080 Msa1357710:intergenic
AAAGTGAGTTAGGAAATTCT+AGG 0.459966 tig0016170:+2169 Msa1357710:intergenic
TCTTCAACTTGGTCGTCATC+GGG 0.460270 tig0016170:+2950 Msa1357710:intergenic
CCGTATCAAAGAATTGTAGT+AGG 0.472999 tig0016170:+2417 Msa1357710:intergenic
GTGGGTGAGTGTAACGGAGG+AGG 0.477449 tig0016170:+3048 Msa1357710:intergenic
CTACCTGGGAGGCATTGGTT+GGG 0.478796 tig0016170:+2900 Msa1357710:intergenic
AGTACCTACCTGGGAGGCAT+TGG 0.485202 tig0016170:+2895 Msa1357710:intergenic
GGAGCTATGAAATTCAATTT+GGG 0.488254 tig0016170:+2251 Msa1357710:intergenic
CGTGAATGGGATGATGCTGC+GGG 0.502866 tig0016170:+3093 Msa1357710:intergenic
GGTTACTTTACATAAATGGT+TGG 0.503773 tig0016170:-2497 Msa1357710:CDS
GAAATGGATGAGAATGTGAA+TGG 0.509383 tig0016170:+2978 Msa1357710:intergenic
AGAAGCAATTGCACTGGGAC+AGG 0.510296 tig0016170:+3209 Msa1357710:intergenic
CCTACTACAATTCTTTGATA+CGG 0.511408 tig0016170:-2417 Msa1357710:CDS
AAGAGGAAGCGTGTTGATGG+TGG 0.520055 tig0016170:+3029 Msa1357710:intergenic
AAATAAAGAAGCAATTGCAC+TGG 0.531847 tig0016170:+3203 Msa1357710:intergenic
GCGTGAATGGGATGATGCTG+CGG 0.532208 tig0016170:+3092 Msa1357710:intergenic
TTAGGAATCAGAGTGGCTTA+GGG 0.532497 tig0016170:-2518 Msa1357710:intron
ACTCCCAACCAATGCCTCCC+AGG 0.538117 tig0016170:-2903 Msa1357710:intron
TAATAAAGTTTCTGAACGAA+TGG 0.541566 tig0016170:-3247 Msa1357710:five_prime_UTR
GCGCAGCGGATTGAACAATT+CGG 0.542240 tig0016170:-2277 Msa1357710:CDS
CCTACCTGGGAGGCATTGGT+TGG 0.555347 tig0016170:+2899 Msa1357710:intergenic
GCTGCGGGGTGATAGAATGA+TGG 0.566571 tig0016170:+3108 Msa1357710:intergenic
GAACACGAAGGTCTTCAACT+TGG 0.573094 tig0016170:+2939 Msa1357710:intergenic
TCTCATTAAACTCTTTAACT+GGG 0.593475 tig0016170:+2077 Msa1357710:intergenic
TGGTTGGGAGTAACCAATGA+GGG 0.597474 tig0016170:+2915 Msa1357710:intergenic
AGCCGCATTTGCAGATGTGT+AGG 0.600800 tig0016170:+2312 Msa1357710:intergenic
GCTATGAAATTCAATTTGGG+TGG 0.604807 tig0016170:+2254 Msa1357710:intergenic
CTGTCCTGAGGAAACAAATG+TGG 0.608003 tig0016170:-2464 Msa1357710:CDS
AATAAAGAAGCAATTGCACT+GGG 0.608828 tig0016170:+3204 Msa1357710:intergenic
CTGCGGGGTGATAGAATGAT+GGG 0.608917 tig0016170:+3109 Msa1357710:intergenic
TTGAATTTCATAGCTCCACA+TGG 0.618128 tig0016170:-2245 Msa1357710:exon
AGAGGAAGCGTGTTGATGGT+GGG 0.631850 tig0016170:+3030 Msa1357710:intergenic
ATGGTGGGTGAGTGTAACGG+AGG 0.641106 tig0016170:+3045 Msa1357710:intergenic
GGCCTACACATCTGCAAATG+CGG 0.641836 tig0016170:-2314 Msa1357710:CDS
AAATGGATGAGAATGTGAAT+GGG 0.656050 tig0016170:+2979 Msa1357710:intergenic
TTGATGGTGGGTGAGTGTAA+CGG 0.662684 tig0016170:+3042 Msa1357710:intergenic
TTGGTTGGGAGTAACCAATG+AGG 0.663293 tig0016170:+2914 Msa1357710:intergenic
TTCACAATTAGGAATCAGAG+TGG 0.681970 tig0016170:-2525 Msa1357710:intron
CTGTAAACCTAATCGCGCAG+CGG 0.684704 tig0016170:-2291 Msa1357710:CDS
GTTGGGAGTAACCAATGAGG+GGG 0.704622 tig0016170:+2917 Msa1357710:intergenic
GTGAATGGGATGATGCTGCG+GGG 0.706574 tig0016170:+3094 Msa1357710:intergenic
GGTTGGGAGTAACCAATGAG+GGG 0.709296 tig0016170:+2916 Msa1357710:intergenic
GGATGATGAATACTGTCCTG+AGG 0.725475 tig0016170:-2476 Msa1357710:CDS
GAAAAGAGTACCTACCTGGG+AGG 0.727204 tig0016170:+2889 Msa1357700:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTTTTTCACAATT+AGG - tig0016170:2733-2752 Msa1357710:intron 10.0%
!!! TTTTATTTTTTTTCACAATT+AGG - tig0016170:2733-2752 Msa1357710:intron 10.0%
!!! AGAAACTTTATTATTTTTCT+CGG + tig0016170:2015-2034 Msa1357710:intergenic 15.0%
!! GAATTGGTTAAATATTGTTA+AGG - tig0016170:2465-2484 Msa1357710:CDS 20.0%
!! AGTTAAAAGTTAGTTAGAAT+TGG - tig0016170:2510-2529 Msa1357710:CDS 20.0%
!!! CTATTTTCTCAAATTATTAC+CGG + tig0016170:2567-2586 Msa1357710:intergenic 20.0%
!! AAAAAACAATTAATGAGTGT+AGG + tig0016170:2716-2735 Msa1357710:intergenic 20.0%
!! AAAACTTTCCTTATAAGAAA+TGG + tig0016170:2930-2949 Msa1357710:intergenic 20.0%
!! GAATTGGTTAAATATTGTTA+AGG - tig0016170:2465-2484 Msa1357710:CDS 20.0%
!! AGTTAAAAGTTAGTTAGAAT+TGG - tig0016170:2510-2529 Msa1357710:CDS 20.0%
!!! CTATTTTCTCAAATTATTAC+CGG + tig0016170:2567-2586 Msa1357710:intergenic 20.0%
!! AAAAAACAATTAATGAGTGT+AGG + tig0016170:2716-2735 Msa1357710:intergenic 20.0%
!! AAAACTTTCCTTATAAGAAA+TGG + tig0016170:2930-2949 Msa1357710:intergenic 20.0%
! TAATAAAGTTTCTGAACGAA+TGG - tig0016170:2022-2041 Msa1357710:three_prime_UTR 25.0%
! GTAGGATAATTATGTTTACT+TGG + tig0016170:2698-2717 Msa1357710:intergenic 25.0%
!! TTAGGGTTACTTTACATAAA+TGG - tig0016170:2768-2787 Msa1357710:intron 25.0%
! ATTGGAAACCATTTCTTATA+AGG - tig0016170:2919-2938 Msa1357710:CDS 25.0%
!! TCTTATAAGGAAAGTTTTCA+TGG - tig0016170:2932-2951 Msa1357710:CDS 25.0%
!! CTTATAAGGAAAGTTTTCAT+GGG - tig0016170:2933-2952 Msa1357710:CDS 25.0%
!! TTATAAGGAAAGTTTTCATG+GGG - tig0016170:2934-2953 Msa1357710:CDS 25.0%
! TCTCATTAAACTCTTTAACT+GGG + tig0016170:3195-3214 Msa1357710:intergenic 25.0%
! TTCTCATTAAACTCTTTAAC+TGG + tig0016170:3196-3215 Msa1357710:intergenic 25.0%
! TAATAAAGTTTCTGAACGAA+TGG - tig0016170:2022-2041 Msa1357710:three_prime_UTR 25.0%
! GTAGGATAATTATGTTTACT+TGG + tig0016170:2698-2717 Msa1357710:intergenic 25.0%
!! TTAGGGTTACTTTACATAAA+TGG - tig0016170:2768-2787 Msa1357710:intron 25.0%
! ATTGGAAACCATTTCTTATA+AGG - tig0016170:2919-2938 Msa1357710:CDS 25.0%
!! TCTTATAAGGAAAGTTTTCA+TGG - tig0016170:2932-2951 Msa1357710:CDS 25.0%
!! CTTATAAGGAAAGTTTTCAT+GGG - tig0016170:2933-2952 Msa1357710:CDS 25.0%
!! TTATAAGGAAAGTTTTCATG+GGG - tig0016170:2934-2953 Msa1357710:CDS 25.0%
! TCTCATTAAACTCTTTAACT+GGG + tig0016170:3195-3214 Msa1357710:intergenic 25.0%
! TTCTCATTAAACTCTTTAAC+TGG + tig0016170:3196-3215 Msa1357710:intergenic 25.0%
AATAAAGAAGCAATTGCACT+GGG + tig0016170:2068-2087 Msa1357710:intergenic 30.0%
AAATAAAGAAGCAATTGCAC+TGG + tig0016170:2069-2088 Msa1357710:intergenic 30.0%
AAATGGATGAGAATGTGAAT+GGG + tig0016170:2293-2312 Msa1357710:intergenic 30.0%
!! CCTCTCAAATTTTAGAAACA+CGG - tig0016170:2410-2429 Msa1357710:CDS 30.0%
TGAGATGTTCATGTTAGAAT+TGG - tig0016170:2449-2468 Msa1357710:CDS 30.0%
! GGTTACTTTACATAAATGGT+TGG - tig0016170:2772-2791 Msa1357710:intron 30.0%
CAAAGAATTGTAGTAGGATT+TGG + tig0016170:2849-2868 Msa1357710:intergenic 30.0%
CCTACTACAATTCTTTGATA+CGG - tig0016170:2852-2871 Msa1357710:intron 30.0%
! AGCTGACATTTTGTTGAATA+TGG - tig0016170:2889-2908 Msa1357710:intron 30.0%
GGAGCTATGAAATTCAATTT+GGG + tig0016170:3021-3040 Msa1357710:intergenic 30.0%
TGGAGCTATGAAATTCAATT+TGG + tig0016170:3022-3041 Msa1357710:intergenic 30.0%
AAAGTGAGTTAGGAAATTCT+AGG + tig0016170:3103-3122 Msa1357710:intergenic 30.0%
!! GAATTTCCTAACTCACTTTT+TGG - tig0016170:3104-3123 Msa1357710:CDS 30.0%
AATAAAGAAGCAATTGCACT+GGG + tig0016170:2068-2087 Msa1357710:intergenic 30.0%
AAATAAAGAAGCAATTGCAC+TGG + tig0016170:2069-2088 Msa1357710:intergenic 30.0%
AAATGGATGAGAATGTGAAT+GGG + tig0016170:2293-2312 Msa1357710:intergenic 30.0%
!! CCTCTCAAATTTTAGAAACA+CGG - tig0016170:2410-2429 Msa1357710:CDS 30.0%
TGAGATGTTCATGTTAGAAT+TGG - tig0016170:2449-2468 Msa1357710:CDS 30.0%
! GGTTACTTTACATAAATGGT+TGG - tig0016170:2772-2791 Msa1357710:intron 30.0%
CAAAGAATTGTAGTAGGATT+TGG + tig0016170:2849-2868 Msa1357710:intergenic 30.0%
CCTACTACAATTCTTTGATA+CGG - tig0016170:2852-2871 Msa1357710:intron 30.0%
! AGCTGACATTTTGTTGAATA+TGG - tig0016170:2889-2908 Msa1357710:intron 30.0%
GGAGCTATGAAATTCAATTT+GGG + tig0016170:3021-3040 Msa1357710:intergenic 30.0%
TGGAGCTATGAAATTCAATT+TGG + tig0016170:3022-3041 Msa1357710:intergenic 30.0%
AAAGTGAGTTAGGAAATTCT+AGG + tig0016170:3103-3122 Msa1357710:intergenic 30.0%
!! GAATTTCCTAACTCACTTTT+TGG - tig0016170:3104-3123 Msa1357710:CDS 30.0%
!! TATTTTTCTAGTCGAGCAAG+CGG - tig0016170:2084-2103 Msa1357710:three_prime_UTR 35.0%
!!! GTGAACAATTTTTGGTGAAG+AGG + tig0016170:2260-2279 Msa1357710:intergenic 35.0%
! CGAGTAGTGTGAACAATTTT+TGG + tig0016170:2268-2287 Msa1357710:intergenic 35.0%
GAAATGGATGAGAATGTGAA+TGG + tig0016170:2294-2313 Msa1357710:intergenic 35.0%
!! AATGAAAAGAGTACCTACCT+GGG + tig0016170:2386-2405 Msa1357710:intergenic 35.0%
!! CCGTGTTTCTAAAATTTGAG+AGG + tig0016170:2413-2432 Msa1357710:intergenic 35.0%
TGGAATTTATAAATGAGCGC+AGG + tig0016170:2678-2697 Msa1357710:intergenic 35.0%
TTCACAATTAGGAATCAGAG+TGG - tig0016170:2744-2763 Msa1357710:intron 35.0%
CCGTATCAAAGAATTGTAGT+AGG + tig0016170:2855-2874 Msa1357710:intergenic 35.0%
GCTATGAAATTCAATTTGGG+TGG + tig0016170:3018-3037 Msa1357710:intergenic 35.0%
TTGAATTTCATAGCTCCACA+TGG - tig0016170:3024-3043 Msa1357710:CDS 35.0%
AGTGAAAAAACCAAACCATG+TGG + tig0016170:3042-3061 Msa1357710:intergenic 35.0%
!! TATTTTTCTAGTCGAGCAAG+CGG - tig0016170:2084-2103 Msa1357710:three_prime_UTR 35.0%
!!! GTGAACAATTTTTGGTGAAG+AGG + tig0016170:2260-2279 Msa1357710:intergenic 35.0%
! CGAGTAGTGTGAACAATTTT+TGG + tig0016170:2268-2287 Msa1357710:intergenic 35.0%
GAAATGGATGAGAATGTGAA+TGG + tig0016170:2294-2313 Msa1357710:intergenic 35.0%
!! AATGAAAAGAGTACCTACCT+GGG + tig0016170:2386-2405 Msa1357710:intergenic 35.0%
!! CCGTGTTTCTAAAATTTGAG+AGG + tig0016170:2413-2432 Msa1357710:intergenic 35.0%
TGGAATTTATAAATGAGCGC+AGG + tig0016170:2678-2697 Msa1357710:intergenic 35.0%
TTCACAATTAGGAATCAGAG+TGG - tig0016170:2744-2763 Msa1357710:intron 35.0%
CCGTATCAAAGAATTGTAGT+AGG + tig0016170:2855-2874 Msa1357710:intergenic 35.0%
GCTATGAAATTCAATTTGGG+TGG + tig0016170:3018-3037 Msa1357710:intergenic 35.0%
TTGAATTTCATAGCTCCACA+TGG - tig0016170:3024-3043 Msa1357710:CDS 35.0%
AGTGAAAAAACCAAACCATG+TGG + tig0016170:3042-3061 Msa1357710:intergenic 35.0%
TCTGAACGAATGGCTCATAT+TGG - tig0016170:2032-2051 Msa1357710:three_prime_UTR 40.0%
! GATAGAATGATGGGATGAAC+TGG + tig0016170:2154-2173 Msa1357710:intergenic 40.0%
!! GAATGAAAAGAGTACCTACC+TGG + tig0016170:2387-2406 Msa1357710:intergenic 40.0%
ATTAGGAATCAGAGTGGCTT+AGG - tig0016170:2750-2769 Msa1357710:intron 40.0%
TTAGGAATCAGAGTGGCTTA+GGG - tig0016170:2751-2770 Msa1357710:intron 40.0%
ATCTCCACATTTGTTTCCTC+AGG + tig0016170:2812-2831 Msa1357710:intergenic 40.0%
GTTGAATATGGCACGTGAAT+TGG - tig0016170:2901-2920 Msa1357710:intron 40.0%
TTTCATAGCTCCACATGGTT+TGG - tig0016170:3029-3048 Msa1357710:CDS 40.0%
GAGTCACCAAAAAGTGAGTT+AGG + tig0016170:3113-3132 Msa1357710:intergenic 40.0%
TCTGAACGAATGGCTCATAT+TGG - tig0016170:2032-2051 Msa1357710:three_prime_UTR 40.0%
! GATAGAATGATGGGATGAAC+TGG + tig0016170:2154-2173 Msa1357710:intergenic 40.0%
!! GAATGAAAAGAGTACCTACC+TGG + tig0016170:2387-2406 Msa1357710:intergenic 40.0%
ATTAGGAATCAGAGTGGCTT+AGG - tig0016170:2750-2769 Msa1357710:intron 40.0%
TTAGGAATCAGAGTGGCTTA+GGG - tig0016170:2751-2770 Msa1357710:intron 40.0%
ATCTCCACATTTGTTTCCTC+AGG + tig0016170:2812-2831 Msa1357710:intergenic 40.0%
GTTGAATATGGCACGTGAAT+TGG - tig0016170:2901-2920 Msa1357710:intron 40.0%
TTTCATAGCTCCACATGGTT+TGG - tig0016170:3029-3048 Msa1357710:CDS 40.0%
GAGTCACCAAAAAGTGAGTT+AGG + tig0016170:3113-3132 Msa1357710:intergenic 40.0%
!! TTGATGGTGGGTGAGTGTAA+CGG + tig0016170:2230-2249 Msa1357710:intergenic 45.0%
TCTTCAACTTGGTCGTCATC+GGG + tig0016170:2322-2341 Msa1357710:intergenic 45.0%
GTCTTCAACTTGGTCGTCAT+CGG + tig0016170:2323-2342 Msa1357710:intergenic 45.0%
GAACACGAAGGTCTTCAACT+TGG + tig0016170:2333-2352 Msa1357710:intergenic 45.0%
TGGTTGGGAGTAACCAATGA+GGG + tig0016170:2357-2376 Msa1357710:intergenic 45.0%
TTGGTTGGGAGTAACCAATG+AGG + tig0016170:2358-2377 Msa1357710:intergenic 45.0%
GTTTCAACACCGAAAGGACA+CGG + tig0016170:2620-2639 Msa1357710:intergenic 45.0%
CAAGTGGTTTCAACACCGAA+AGG + tig0016170:2626-2645 Msa1357710:intergenic 45.0%
!! CTTTCGGTGTTGAAACCACT+TGG - tig0016170:2624-2643 Msa1357710:intron 45.0%
! GTTGAAACCACTTGGTGGTT+AGG - tig0016170:2632-2651 Msa1357710:intron 45.0%
TAGTGATCCTAACCACCAAG+TGG + tig0016170:2642-2661 Msa1357710:intergenic 45.0%
GGATGATGAATACTGTCCTG+AGG - tig0016170:2793-2812 Msa1357710:intron 45.0%
CTGTCCTGAGGAAACAAATG+TGG - tig0016170:2805-2824 Msa1357710:intron 45.0%
!! TTGATGGTGGGTGAGTGTAA+CGG + tig0016170:2230-2249 Msa1357710:intergenic 45.0%
TCTTCAACTTGGTCGTCATC+GGG + tig0016170:2322-2341 Msa1357710:intergenic 45.0%
GTCTTCAACTTGGTCGTCAT+CGG + tig0016170:2323-2342 Msa1357710:intergenic 45.0%
GAACACGAAGGTCTTCAACT+TGG + tig0016170:2333-2352 Msa1357710:intergenic 45.0%
TGGTTGGGAGTAACCAATGA+GGG + tig0016170:2357-2376 Msa1357710:intergenic 45.0%
TTGGTTGGGAGTAACCAATG+AGG + tig0016170:2358-2377 Msa1357710:intergenic 45.0%
GTTTCAACACCGAAAGGACA+CGG + tig0016170:2620-2639 Msa1357710:intergenic 45.0%
CAAGTGGTTTCAACACCGAA+AGG + tig0016170:2626-2645 Msa1357710:intergenic 45.0%
!! CTTTCGGTGTTGAAACCACT+TGG - tig0016170:2624-2643 Msa1357710:intron 45.0%
! GTTGAAACCACTTGGTGGTT+AGG - tig0016170:2632-2651 Msa1357710:intron 45.0%
TAGTGATCCTAACCACCAAG+TGG + tig0016170:2642-2661 Msa1357710:intergenic 45.0%
GGATGATGAATACTGTCCTG+AGG - tig0016170:2793-2812 Msa1357710:intron 45.0%
CTGTCCTGAGGAAACAAATG+TGG - tig0016170:2805-2824 Msa1357710:intron 45.0%
AGAAGCAATTGCACTGGGAC+AGG + tig0016170:2063-2082 Msa1357710:intergenic 50.0%
CTGCGGGGTGATAGAATGAT+GGG + tig0016170:2163-2182 Msa1357710:intergenic 50.0%
AGGAGGAAGATGGCGTGAAT+GGG + tig0016170:2192-2211 Msa1357710:intergenic 50.0%
!! AGAGGAAGCGTGTTGATGGT+GGG + tig0016170:2242-2261 Msa1357710:intergenic 50.0%
! AAGAGGAAGCGTGTTGATGG+TGG + tig0016170:2243-2262 Msa1357710:intergenic 50.0%
! GTGAAGAGGAAGCGTGTTGA+TGG + tig0016170:2246-2265 Msa1357710:intergenic 50.0%
!! TCGTCATCGGGTTCTGGAAA+TGG + tig0016170:2310-2329 Msa1357710:intergenic 50.0%
GTTGGGAGTAACCAATGAGG+GGG + tig0016170:2355-2374 Msa1357710:intergenic 50.0%
GGTTGGGAGTAACCAATGAG+GGG + tig0016170:2356-2375 Msa1357710:intergenic 50.0%
!! GAAAAGAGTACCTACCTGGG+AGG + tig0016170:2383-2402 Msa1357710:intergenic 50.0%
!! TGGTTAGCTTAGACCGACGA+AGG - tig0016170:2530-2549 Msa1357710:intron 50.0%
CACATGTGTCCGTGTCCTTT+CGG - tig0016170:2608-2627 Msa1357710:intron 50.0%
!! TCGGTGTTGAAACCACTTGG+TGG - tig0016170:2627-2646 Msa1357710:intron 50.0%
GGCCTACACATCTGCAAATG+CGG - tig0016170:2955-2974 Msa1357710:CDS 50.0%
AGCCGCATTTGCAGATGTGT+AGG + tig0016170:2960-2979 Msa1357710:intergenic 50.0%
CTGTAAACCTAATCGCGCAG+CGG - tig0016170:2978-2997 Msa1357710:CDS 50.0%
!! GCGCAGCGGATTGAACAATT+CGG - tig0016170:2992-3011 Msa1357710:CDS 50.0%
AGAAGCAATTGCACTGGGAC+AGG + tig0016170:2063-2082 Msa1357710:intergenic 50.0%
CTGCGGGGTGATAGAATGAT+GGG + tig0016170:2163-2182 Msa1357710:intergenic 50.0%
AGGAGGAAGATGGCGTGAAT+GGG + tig0016170:2192-2211 Msa1357710:intergenic 50.0%
!! AGAGGAAGCGTGTTGATGGT+GGG + tig0016170:2242-2261 Msa1357710:intergenic 50.0%
! AAGAGGAAGCGTGTTGATGG+TGG + tig0016170:2243-2262 Msa1357710:intergenic 50.0%
! GTGAAGAGGAAGCGTGTTGA+TGG + tig0016170:2246-2265 Msa1357710:intergenic 50.0%
!! TCGTCATCGGGTTCTGGAAA+TGG + tig0016170:2310-2329 Msa1357710:intergenic 50.0%
GTTGGGAGTAACCAATGAGG+GGG + tig0016170:2355-2374 Msa1357710:intergenic 50.0%
GGTTGGGAGTAACCAATGAG+GGG + tig0016170:2356-2375 Msa1357710:intergenic 50.0%
!! GAAAAGAGTACCTACCTGGG+AGG + tig0016170:2383-2402 Msa1357710:intergenic 50.0%
!! TGGTTAGCTTAGACCGACGA+AGG - tig0016170:2530-2549 Msa1357710:intron 50.0%
CACATGTGTCCGTGTCCTTT+CGG - tig0016170:2608-2627 Msa1357710:intron 50.0%
!! TCGGTGTTGAAACCACTTGG+TGG - tig0016170:2627-2646 Msa1357710:intron 50.0%
GGCCTACACATCTGCAAATG+CGG - tig0016170:2955-2974 Msa1357710:CDS 50.0%
AGCCGCATTTGCAGATGTGT+AGG + tig0016170:2960-2979 Msa1357710:intergenic 50.0%
CTGTAAACCTAATCGCGCAG+CGG - tig0016170:2978-2997 Msa1357710:CDS 50.0%
!! GCGCAGCGGATTGAACAATT+CGG - tig0016170:2992-3011 Msa1357710:CDS 50.0%
GCTGCGGGGTGATAGAATGA+TGG + tig0016170:2164-2183 Msa1357710:intergenic 55.0%
GTGAATGGGATGATGCTGCG+GGG + tig0016170:2178-2197 Msa1357710:intergenic 55.0%
CGTGAATGGGATGATGCTGC+GGG + tig0016170:2179-2198 Msa1357710:intergenic 55.0%
GCGTGAATGGGATGATGCTG+CGG + tig0016170:2180-2199 Msa1357710:intergenic 55.0%
GAGGAGGAAGATGGCGTGAA+TGG + tig0016170:2193-2212 Msa1357710:intergenic 55.0%
!! ATGGTGGGTGAGTGTAACGG+AGG + tig0016170:2227-2246 Msa1357710:intergenic 55.0%
ACTTGGTCGTCATCGGGTTC+TGG + tig0016170:2316-2335 Msa1357710:intergenic 55.0%
ACCTTCGTGTTCCCCCTCAT+TGG - tig0016170:2341-2360 Msa1357710:CDS 55.0%
ACCAATGAGGGGGAACACGA+AGG + tig0016170:2345-2364 Msa1357710:intergenic 55.0%
!! CTACCTGGGAGGCATTGGTT+GGG + tig0016170:2372-2391 Msa1357710:intergenic 55.0%
! AGTACCTACCTGGGAGGCAT+TGG + tig0016170:2377-2396 Msa1357710:intergenic 55.0%
!! GGTGTTGACGTGTCCTTCGT+CGG + tig0016170:2546-2565 Msa1357710:intergenic 55.0%
GACGAAGGACACGTCAACAC+CGG - tig0016170:2545-2564 Msa1357710:intron 55.0%
GTTCAATCCGCTGCGCGATT+AGG + tig0016170:2988-3007 Msa1357710:intergenic 55.0%
GCTGCGGGGTGATAGAATGA+TGG + tig0016170:2164-2183 Msa1357710:intergenic 55.0%
GTGAATGGGATGATGCTGCG+GGG + tig0016170:2178-2197 Msa1357710:intergenic 55.0%
CGTGAATGGGATGATGCTGC+GGG + tig0016170:2179-2198 Msa1357710:intergenic 55.0%
GCGTGAATGGGATGATGCTG+CGG + tig0016170:2180-2199 Msa1357710:intergenic 55.0%
GAGGAGGAAGATGGCGTGAA+TGG + tig0016170:2193-2212 Msa1357710:intergenic 55.0%
!! ATGGTGGGTGAGTGTAACGG+AGG + tig0016170:2227-2246 Msa1357710:intergenic 55.0%
ACTTGGTCGTCATCGGGTTC+TGG + tig0016170:2316-2335 Msa1357710:intergenic 55.0%
ACCTTCGTGTTCCCCCTCAT+TGG - tig0016170:2341-2360 Msa1357710:CDS 55.0%
ACCAATGAGGGGGAACACGA+AGG + tig0016170:2345-2364 Msa1357710:intergenic 55.0%
!! CTACCTGGGAGGCATTGGTT+GGG + tig0016170:2372-2391 Msa1357710:intergenic 55.0%
! AGTACCTACCTGGGAGGCAT+TGG + tig0016170:2377-2396 Msa1357710:intergenic 55.0%
!! GGTGTTGACGTGTCCTTCGT+CGG + tig0016170:2546-2565 Msa1357710:intergenic 55.0%
GACGAAGGACACGTCAACAC+CGG - tig0016170:2545-2564 Msa1357710:intron 55.0%
GTTCAATCCGCTGCGCGATT+AGG + tig0016170:2988-3007 Msa1357710:intergenic 55.0%
GAGGAGGAGGAGGAGGAAGA+TGG + tig0016170:2202-2221 Msa1357710:intergenic 60.0%
! TGTAACGGAGGAGGAGGAGG+AGG + tig0016170:2215-2234 Msa1357710:intergenic 60.0%
! GAGTGTAACGGAGGAGGAGG+AGG + tig0016170:2218-2237 Msa1357710:intergenic 60.0%
! GGTGAGTGTAACGGAGGAGG+AGG + tig0016170:2221-2240 Msa1357710:intergenic 60.0%
! GTGGGTGAGTGTAACGGAGG+AGG + tig0016170:2224-2243 Msa1357710:intergenic 60.0%
ACTCCCAACCAATGCCTCCC+AGG - tig0016170:2366-2385 Msa1357710:CDS 60.0%
!! CCTACCTGGGAGGCATTGGT+TGG + tig0016170:2373-2392 Msa1357710:intergenic 60.0%
CCAACCAATGCCTCCCAGGT+AGG - tig0016170:2370-2389 Msa1357710:CDS 60.0%
GAGGAGGAGGAGGAGGAAGA+TGG + tig0016170:2202-2221 Msa1357710:intergenic 60.0%
! TGTAACGGAGGAGGAGGAGG+AGG + tig0016170:2215-2234 Msa1357710:intergenic 60.0%
! GAGTGTAACGGAGGAGGAGG+AGG + tig0016170:2218-2237 Msa1357710:intergenic 60.0%
! GGTGAGTGTAACGGAGGAGG+AGG + tig0016170:2221-2240 Msa1357710:intergenic 60.0%
! GTGGGTGAGTGTAACGGAGG+AGG + tig0016170:2224-2243 Msa1357710:intergenic 60.0%
ACTCCCAACCAATGCCTCCC+AGG - tig0016170:2366-2385 Msa1357710:CDS 60.0%
!! CCTACCTGGGAGGCATTGGT+TGG + tig0016170:2373-2392 Msa1357710:intergenic 60.0%
CCAACCAATGCCTCCCAGGT+AGG - tig0016170:2370-2389 Msa1357710:CDS 60.0%
AACGGAGGAGGAGGAGGAGG+AGG + tig0016170:2212-2231 Msa1357710:intergenic 65.0%
AACGGAGGAGGAGGAGGAGG+AGG + tig0016170:2212-2231 Msa1357710:intergenic 65.0%
GGAGGAGGAGGAGGAGGAGG+AGG + tig0016170:2206-2225 Msa1357710:intergenic 70.0%
GGAGGAGGAGGAGGAGGAGG+AGG + tig0016170:2206-2225 Msa1357710:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0016170 gene 2015 3276 2015 ID=Msa1357710;Name=Msa1357710
tig0016170 mRNA 2015 3276 2015 ID=Msa1357710-mRNA-1;Parent=Msa1357710;Name=Msa1357710-mRNA-1;_AED=0.00;_eAED=0.00;_QI=115|1|1|1|1|1|2|249|176
tig0016170 exon 2015 2536 2015 ID=Msa1357710-mRNA-1:exon:10472;Parent=Msa1357710-mRNA-1
tig0016170 exon 2904 3276 2904 ID=Msa1357710-mRNA-1:exon:10471;Parent=Msa1357710-mRNA-1
tig0016170 five_prime_UTR 3162 3276 3162 ID=Msa1357710-mRNA-1:five_prime_utr;Parent=Msa1357710-mRNA-1
tig0016170 CDS 2904 3161 2904 ID=Msa1357710-mRNA-1:cds;Parent=Msa1357710-mRNA-1
tig0016170 CDS 2264 2536 2264 ID=Msa1357710-mRNA-1:cds;Parent=Msa1357710-mRNA-1
tig0016170 three_prime_UTR 2015 2263 2015 ID=Msa1357710-mRNA-1:three_prime_utr;Parent=Msa1357710-mRNA-1
Gene Sequence

>Msa1357710

ATGTCAAGCTTGAAATTGAATCCAGTTCATCCCATCATTCTATCACCCCGCAGCATCATCCCATTCACGCCATCTTCCTCCTCCTCCTCCTCCTCCTCCGTTACACTCACCCACCATCAACACGCTTCCTCTTCACCAAAAATTGTTCACACTACTCGTACCCATTCACATTCTCATCCATTTCCAGAACCCGATGACGACCAAGTTGAAGACCTTCGTGTTCCCCCTCATTGGTTACTCCCAACCAATGCCTCCCAGGAATCAGAGTGGCTTAGGGTTACTTTACATAAATGGTTGGATGATGAATACTGTCCTGAGGAAACAAATGTGGAGATAAGCAGAGTTGCTGCCAAATCCTACTACAATTCTTTGATACGGAAACAAGCTGATTTAGCTGACATTTTGTTGAATATGGCACGTGAATTGGAAACCATTTCTTATAAGGAAAGTTTTCATGGGGCCTACACATCTGCAAATGCGGCTGTAAACCTAATCGCGCAGCGGATTGAACAATTCGGCCACCCAAATTGA

Protein sequence

>Msa1357710

MSSLKLNPVHPIILSPRSIIPFTPSSSSSSSSSVTLTHHQHASSSPKIVHTTRTHSHSHPFPEPDDDQVEDLRVPPHWLLPTNASQESEWLRVTLHKWLDDEYCPEETNVEISRVAAKSYYNSLIRKQADLADILLNMARELETISYKESFHGAYTSANAAVNLIAQRIEQFGHPN*