AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0706790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0706790 MtrunA17_Chr8g0389101 97.544 285 7 0 1 285 1 285 0.0 564
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0706790 AT3G10670.1 71.888 249 70 0 34 282 89 337 2.87e-133 381
Msa0706790 AT5G06530.3 29.817 218 132 6 27 230 147 357 6.77e-12 66.2
Msa0706790 AT5G06530.2 29.358 218 133 6 27 230 147 357 6.90e-12 66.2
Msa0706790 AT5G06530.1 29.358 218 133 6 27 230 147 357 6.90e-12 66.2

Find 99 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCATTAGATTCAACGATTT+TGG 0.142242 4_4:-79910061 None:intergenic
GATCTTGCAGCTTGCAGTTT+TGG 0.164666 4_4:+79911124 Msa0706790:CDS
ATCCCCTTCAAGATCATAAT+TGG 0.204225 4_4:+79913033 Msa0706790:three_prime_UTR
CAATCACCTGTTGCAATTCC+TGG 0.224835 4_4:+79910294 Msa0706790:CDS
TTTGAAACCTTTAATCATTC+TGG 0.229420 4_4:+79913157 Msa0706790:three_prime_UTR
CCTTCAAGGGCTCTTTCTTC+AGG 0.248911 4_4:-79910255 None:intergenic
TGTTCAGTAGTTGTATCTTA+TGG 0.272068 4_4:+79913237 Msa0706790:three_prime_UTR
TTCTTCTGCAAGGATGAGTT+TGG 0.292197 4_4:+79913266 Msa0706790:three_prime_UTR
AGGGGAAAATTTGCTTGAAA+TGG 0.308468 4_4:+79910230 Msa0706790:CDS
AAATGATCAATTTCTTGTTA+TGG 0.315799 4_4:+79910323 Msa0706790:CDS
CCCAGATGACAGTACTGTTC+TGG 0.321843 4_4:+79913209 Msa0706790:three_prime_UTR
ACCTCAAGGGGTCCAAGTTC+AGG 0.361866 4_4:-79910378 None:intergenic
TGAAATGGTGTGGCTGGTTT+CGG 0.362469 4_4:+79912966 Msa0706790:three_prime_UTR
TTGCGGCGAGTGTGTGATTT+GGG 0.362619 4_4:-79909976 None:intergenic
ATTAACGCCGCGGAGAATTT+CGG 0.363663 4_4:-79910082 None:intergenic
GAAATTTATTGCCTCCTTAC+CGG 0.363979 4_4:+79913289 Msa0706790:three_prime_UTR
CCGCAAATTCGCCTGCTTTG+CGG 0.385979 4_4:+79909993 Msa0706790:CDS
CCCAGAACAGTACTGTCATC+TGG 0.406372 4_4:-79913210 None:intergenic
GGAGAAGAACGGAATTGAAA+TGG 0.406711 4_4:-79909955 None:intergenic
TTTGCGGCGAGTGTGTGATT+TGG 0.406874 4_4:-79909977 None:intergenic
TTTCTGACTTTGTTGTGAAA+TGG 0.406953 4_4:+79912951 Msa0706790:three_prime_UTR
GATTGGATGTTGATGCGCTC+AGG 0.409831 4_4:+79911183 Msa0706790:CDS
CCACTAGTAACTTCATAATC+TGG 0.412502 4_4:-79910192 None:intergenic
CTCGAAGATCGTTGACTTGG+AGG 0.414656 4_4:-79910038 None:intergenic
TCAAGATCATAATTGGGAAT+AGG 0.414993 4_4:+79913040 Msa0706790:three_prime_UTR
CACTTTCGCTAAGGTTCTTG+TGG 0.418543 4_4:+79910164 Msa0706790:CDS
CCGCAAAGCAGGCGAATTTG+CGG 0.425082 4_4:-79909993 None:intergenic
TCTTCTGCAAGGATGAGTTT+GGG 0.425219 4_4:+79913267 Msa0706790:three_prime_UTR
AAACTTGGTCTTCCTGAACT+TGG 0.426220 4_4:+79910366 Msa0706790:CDS
GGTGCTCGCCGCCGCAAAGC+AGG 0.429445 4_4:-79910004 None:intergenic
ACCCTCCCATGTCCATGTTA+TGG 0.431294 4_4:+79911295 Msa0706790:CDS
ACATTTCTATTGAGAAAGTC+AGG 0.433555 4_4:-79911062 None:intergenic
ATTCCCAATTATGATCTTGA+AGG 0.435875 4_4:-79913037 None:intergenic
CAATTATACTAGTACGCTTC+CGG 0.436406 4_4:-79913308 None:intergenic
CCAGATGACAGTACTGTTCT+GGG 0.442968 4_4:+79913210 Msa0706790:three_prime_UTR
AGGCGAAATTCACGCTATCA+TGG 0.454010 4_4:+79910119 Msa0706790:CDS
TTGTTGTGAAATGGTGTGGC+TGG 0.454026 4_4:+79912960 Msa0706790:three_prime_UTR
AACTCATGAAAAGACCTTCA+AGG 0.456874 4_4:-79910269 None:intergenic
AATGTCAACGAAGGGTTTAG+TGG 0.459977 4_4:+79911080 Msa0706790:CDS
ACTTTCGCTAAGGTTCTTGT+GGG 0.463802 4_4:+79910165 Msa0706790:CDS
AAGGACAGGCGACCTATCTA+TGG 0.465705 4_4:+79912859 Msa0706790:CDS
GAAACACCAGGAATTGCAAC+AGG 0.465860 4_4:-79910300 None:intergenic
ATCATCAACAGAGAATTCTC+TGG 0.472195 4_4:-79911239 None:intergenic
GGATGAAATTGATTCGGGAT+TGG 0.478013 4_4:+79911166 Msa0706790:CDS
CCTGAAGAAAGAGCCCTTGA+AGG 0.481223 4_4:+79910255 Msa0706790:CDS
GACTTTGTTGTGAAATGGTG+TGG 0.485720 4_4:+79912956 Msa0706790:three_prime_UTR
TGAGGCAGATGGATATGAAC+TGG 0.490578 4_4:+79912892 Msa0706790:CDS
TTGTTATGGCTTATAATGCT+CGG 0.498223 4_4:+79910337 Msa0706790:CDS
TCCCCTTCAAGATCATAATT+GGG 0.504240 4_4:+79913034 Msa0706790:three_prime_UTR
TCCTGAACTTGGACCCCTTG+AGG 0.506534 4_4:+79910377 Msa0706790:CDS
TGGCTCGAAGATCGTTGACT+TGG 0.513953 4_4:-79910041 None:intergenic
CAAATTCGCCTGCTTTGCGG+CGG 0.518445 4_4:+79909996 Msa0706790:CDS
TGTTGATGCGCTCAGGGATG+TGG 0.524984 4_4:+79911190 Msa0706790:CDS
TTCCCAATTATGATCTTGAA+GGG 0.531251 4_4:-79913036 None:intergenic
TGGTAAAAGCACTTTCGCTA+AGG 0.531262 4_4:+79910155 Msa0706790:CDS
TACATAATTAGATGAGATGA+AGG 0.533030 4_4:+79913066 Msa0706790:three_prime_UTR
CTCAATAGAAATGTCAACGA+AGG 0.535504 4_4:+79911071 Msa0706790:CDS
TCATCAACAGAGAATTCTCT+GGG 0.539796 4_4:-79911238 None:intergenic
CAATTGCATCTACCATAGAT+AGG 0.540712 4_4:-79912871 None:intergenic
AACGGAAGAATTGCAAGGAC+AGG 0.551372 4_4:+79912845 Msa0706790:CDS
ACTCATGAAAAGACCTTCAA+GGG 0.552552 4_4:-79910268 None:intergenic
ATCTATGGTAGATGCAATTG+AGG 0.552780 4_4:+79912874 Msa0706790:CDS
GACTTGGAGGAGGGGAACCT+CGG 0.553003 4_4:-79910025 None:intergenic
AAATGAATAATGAACCTCAA+GGG 0.553158 4_4:-79910391 None:intergenic
TCAATAGAAATGTCAACGAA+GGG 0.553262 4_4:+79911072 Msa0706790:CDS
CCAGAACAGTACTGTCATCT+GGG 0.554079 4_4:-79913209 None:intergenic
TGCTGTCAAGTTGCACAAGT+TGG 0.555095 4_4:+79912999 Msa0706790:three_prime_UTR
TGTTGATGATTACTCACTAT+CGG 0.557313 4_4:+79911252 Msa0706790:CDS
ATACTAGTACGCTTCCGGTA+AGG 0.557668 4_4:-79913303 None:intergenic
GAAGATCGTTGACTTGGAGG+AGG 0.561738 4_4:-79910035 None:intergenic
GGCGAAATTCACGCTATCAT+GGG 0.562057 4_4:+79910120 Msa0706790:CDS
AAAGAATAGCGTAGTAGTGA+TGG 0.562949 4_4:+79909912 Msa0706790:exon
AATTGATCATTTGAAACACC+AGG 0.564779 4_4:-79910312 None:intergenic
GTAGATGCAATTGAGGCAGA+TGG 0.567240 4_4:+79912881 Msa0706790:CDS
AACTTACCATAACATGGACA+TGG 0.572749 4_4:-79911301 None:intergenic
AAGATCGTTGACTTGGAGGA+GGG 0.579227 4_4:-79910034 None:intergenic
ATGGAATATATTCTTCTGCA+AGG 0.584240 4_4:+79913256 Msa0706790:three_prime_UTR
TTCACAACAAAGTCAGAAAG+CGG 0.586800 4_4:-79912947 None:intergenic
ATTGGATGTTGATGCGCTCA+GGG 0.588735 4_4:+79911184 Msa0706790:CDS
ACCATAACATGGACATGGGA+GGG 0.592038 4_4:-79911296 None:intergenic
CTTTGCGGCGGCGAGCACCG+AGG 0.592980 4_4:+79910008 Msa0706790:CDS
AATGCTCGGAGAAAGAAACT+TGG 0.594310 4_4:+79910351 Msa0706790:CDS
AGATCGTTGACTTGGAGGAG+GGG 0.602773 4_4:-79910033 None:intergenic
AATGAATAATGAACCTCAAG+GGG 0.611116 4_4:-79910390 None:intergenic
CTAGTACGCTTCCGGTAAGG+AGG 0.620409 4_4:-79913300 None:intergenic
CCAGATTATGAAGTTACTAG+TGG 0.621960 4_4:+79910192 Msa0706790:CDS
TACCATAACATGGACATGGG+AGG 0.624925 4_4:-79911297 None:intergenic
TCCCAATTATGATCTTGAAG+GGG 0.626342 4_4:-79913035 None:intergenic
CTTCTAAACTATCAGGACAA+CGG 0.631876 4_4:+79912827 Msa0706790:intron
ACTTACCATAACATGGACAT+GGG 0.633255 4_4:-79911300 None:intergenic
GCTCAGGGATGTGGCAAGTG+CGG 0.643242 4_4:+79911199 Msa0706790:CDS
GTCAACGAAGGGTTTAGTGG+AGG 0.664376 4_4:+79911083 Msa0706790:CDS
AGGACAACGGAAGAATTGCA+AGG 0.667405 4_4:+79912840 Msa0706790:intron
TGTGTGATTTGGGAGAAGAA+CGG 0.680750 4_4:-79909966 None:intergenic
AACATGGCAAGCTAAGCTGT+AGG 0.696471 4_4:-79913369 None:intergenic
GTTAATCTCACTATCAACAG+AGG 0.703089 4_4:+79910099 Msa0706790:CDS
TGATAGTGAGATTAACGCCG+CGG 0.730942 4_4:-79910092 None:intergenic
CATCAACAGAGAATTCTCTG+GGG 0.787412 4_4:-79911237 None:intergenic
TCTAATGCCGAAATTCTCCG+CGG 0.794861 4_4:+79910075 Msa0706790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACTTCTTTTTTTTTTAAAA+CGG + chr4_4:79910711-79910730 Msa0706790:intron 10.0%
!!! TATTTTATTTTTTATGGTAA+TGG - chr4_4:79911792-79911811 None:intergenic 10.0%
!! CAAAAGAAAATTAGTAAAAA+AGG - chr4_4:79911657-79911676 None:intergenic 15.0%
!! AAATGATCAATTTCTTGTTA+TGG + chr4_4:79910323-79910342 Msa0706790:CDS 20.0%
!!! GACTTATTTTAGCTTATTTA+TGG + chr4_4:79910577-79910596 Msa0706790:intron 20.0%
!!! TATTTTGGATGAAATTGATT+CGG + chr4_4:79911160-79911179 Msa0706790:CDS 20.0%
!! CTAAATCTATCTAAATAGTT+AGG - chr4_4:79911959-79911978 None:intergenic 20.0%
!! AACTATTTAGATAGATTTAG+AGG + chr4_4:79911959-79911978 Msa0706790:intron 20.0%
!!! AATGTTTTGTTTAATGGTTT+AGG + chr4_4:79912291-79912310 Msa0706790:intron 20.0%
!! TACATTATATGCTCATTTAT+TGG + chr4_4:79912487-79912506 Msa0706790:intron 20.0%
!!! ACCTTTTTAAATGAAATCAA+TGG - chr4_4:79912688-79912707 None:intergenic 20.0%
!!! ATTTCATTTAAAAAGGTACA+TGG + chr4_4:79912691-79912710 Msa0706790:intron 20.0%
!! TGATAGTTTAGAAGAAAAAA+AGG - chr4_4:79912821-79912840 None:intergenic 20.0%
!!! TTTTTTTCTTCTAAACTATC+AGG + chr4_4:79912820-79912839 Msa0706790:intron 20.0%
! AAATGAATAATGAACCTCAA+GGG - chr4_4:79910394-79910413 None:intergenic 25.0%
! TAAATGAATAATGAACCTCA+AGG - chr4_4:79910395-79910414 None:intergenic 25.0%
! AATGATTCTCCAAAATATCA+AGG - chr4_4:79910537-79910556 None:intergenic 25.0%
!!! GCAGTGTTTTTCTTATTTAA+TGG + chr4_4:79911013-79911032 Msa0706790:intron 25.0%
!!! ATTTTGGATGAAATTGATTC+GGG + chr4_4:79911161-79911180 Msa0706790:CDS 25.0%
!!! GTTTTTAACTTACCATAACA+TGG - chr4_4:79911310-79911329 None:intergenic 25.0%
!! ATTCTAAGTTTTCAACTTGA+AGG + chr4_4:79911351-79911370 Msa0706790:intron 25.0%
!! TTCTAAGTTTTCAACTTGAA+GGG + chr4_4:79911352-79911371 Msa0706790:intron 25.0%
! ATGTATATACTTGCATCTTA+TGG + chr4_4:79911608-79911627 Msa0706790:intron 25.0%
! TGTATATACTTGCATCTTAT+GGG + chr4_4:79911609-79911628 Msa0706790:intron 25.0%
!! TTTGAAATTGATGAATGCTT+TGG + chr4_4:79911745-79911764 Msa0706790:intron 25.0%
! TTGAAATTGATGAATGCTTT+GGG + chr4_4:79911746-79911765 Msa0706790:intron 25.0%
! TATGATAGTCTAATAGTTAG+AGG + chr4_4:79911912-79911931 Msa0706790:intron 25.0%
!!! GTTCTGAATGTTTTGTTTAA+TGG + chr4_4:79912285-79912304 Msa0706790:intron 25.0%
!!! AGATTGCTTTTCTTAGAAAA+TGG + chr4_4:79912522-79912541 Msa0706790:intron 25.0%
!! TTTTCTTAGAAAATGGATGT+AGG + chr4_4:79912529-79912548 Msa0706790:intron 25.0%
! ACGTTAAAATAAAATGTGAG+AGG - chr4_4:79912564-79912583 None:intergenic 25.0%
! AACTAAAATTGCAAGTTAGT+GGG - chr4_4:79912660-79912679 None:intergenic 25.0%
!!! GCCATTGATTTCATTTAAAA+AGG + chr4_4:79912684-79912703 Msa0706790:intron 25.0%
!! TTTTCATACACTGTCTATAA+CGG - chr4_4:79912758-79912777 None:intergenic 25.0%
! TACATAATTAGATGAGATGA+AGG + chr4_4:79913066-79913085 Msa0706790:three_prime_UTR 25.0%
!! TTTGAAACCTTTAATCATTC+TGG + chr4_4:79913157-79913176 Msa0706790:three_prime_UTR 25.0%
! CAAAAAACCAGAATGATTAA+AGG - chr4_4:79913167-79913186 None:intergenic 25.0%
!!! TCATTCTGGTTTTTTGATAT+TGG + chr4_4:79913171-79913190 Msa0706790:three_prime_UTR 25.0%
! AATTGATCATTTGAAACACC+AGG - chr4_4:79910315-79910334 None:intergenic 30.0%
TTGTTATGGCTTATAATGCT+CGG + chr4_4:79910337-79910356 Msa0706790:CDS 30.0%
AATGAATAATGAACCTCAAG+GGG - chr4_4:79910393-79910412 None:intergenic 30.0%
! CACATTTTACCACAATATCA+AGG - chr4_4:79910435-79910454 None:intergenic 30.0%
CTTGATATTGTGGTAAAATG+TGG + chr4_4:79910433-79910452 Msa0706790:intron 30.0%
CCAAAATATCAAGGATTATG+AGG - chr4_4:79910528-79910547 None:intergenic 30.0%
! CCTCATAATCCTTGATATTT+TGG + chr4_4:79910525-79910544 Msa0706790:intron 30.0%
ATCATTGTTAAAGCCTTGAT+TGG + chr4_4:79910551-79910570 Msa0706790:intron 30.0%
AAAATAAGTCGATCCAATCA+AGG - chr4_4:79910567-79910586 None:intergenic 30.0%
AAGCTATCTTGGATAACTTA+GGG - chr4_4:79910683-79910702 None:intergenic 30.0%
TAAGCTATCTTGGATAACTT+AGG - chr4_4:79910684-79910703 None:intergenic 30.0%
!!! GTTGTTTTGATAAGCTATCT+TGG - chr4_4:79910694-79910713 None:intergenic 30.0%
! TAAACAACGTATAGCTTGTA+TGG + chr4_4:79910742-79910761 Msa0706790:intron 30.0%
! TTTTGCGACTTAATTGGATT+TGG + chr4_4:79910919-79910938 Msa0706790:intron 30.0%
TTTGCGACTTAATTGGATTT+GGG + chr4_4:79910920-79910939 Msa0706790:intron 30.0%
AAGTCAGAAACCGTAAAAAA+GGG - chr4_4:79910971-79910990 None:intergenic 30.0%
ACATTTCTATTGAGAAAGTC+AGG - chr4_4:79911065-79911084 None:intergenic 30.0%
TCAATAGAAATGTCAACGAA+GGG + chr4_4:79911072-79911091 Msa0706790:CDS 30.0%
!! TGTTGATGATTACTCACTAT+CGG + chr4_4:79911252-79911271 Msa0706790:CDS 30.0%
!!! TCCTTAAGTTTTGAGGAAAA+TGG + chr4_4:79911430-79911449 Msa0706790:intron 30.0%
!!! CCTTAAGTTTTGAGGAAAAT+GGG + chr4_4:79911431-79911450 Msa0706790:intron 30.0%
!!! CTTAAGTTTTGAGGAAAATG+GGG + chr4_4:79911432-79911451 Msa0706790:intron 30.0%
! ATGAAGATTTTACAGCTTGT+TGG + chr4_4:79911574-79911593 Msa0706790:intron 30.0%
! AATTTTATCACGACATCACT+TGG - chr4_4:79911727-79911746 None:intergenic 30.0%
TATTGTCTTCTCAACTATAG+GGG - chr4_4:79911825-79911844 None:intergenic 30.0%
CTATTGTCTTCTCAACTATA+GGG - chr4_4:79911826-79911845 None:intergenic 30.0%
TCTATTGTCTTCTCAACTAT+AGG - chr4_4:79911827-79911846 None:intergenic 30.0%
TAATAGTTAGAGGTAGATCA+AGG + chr4_4:79911922-79911941 Msa0706790:intron 30.0%
TATCTAAATAGTTAGGCCAA+TGG - chr4_4:79911952-79911971 None:intergenic 30.0%
TTCCATTTCCTAAAGAAAGT+AGG + chr4_4:79912081-79912100 Msa0706790:intron 30.0%
AGAAAAGACCTACTTTCTTT+AGG - chr4_4:79912092-79912111 None:intergenic 30.0%
GCTATAACATTATCCTTTGA+GGG - chr4_4:79912136-79912155 None:intergenic 30.0%
TGCTATAACATTATCCTTTG+AGG - chr4_4:79912137-79912156 None:intergenic 30.0%
! ATGATTTTCAATTTACTCCG+TGG + chr4_4:79912196-79912215 Msa0706790:intron 30.0%
CCAATACTATGAATTAACCA+CGG - chr4_4:79912216-79912235 None:intergenic 30.0%
AAGTGTGTGTTATGTAATAC+AGG - chr4_4:79912243-79912262 None:intergenic 30.0%
GTAGCTAGCAGAAAATATAT+GGG - chr4_4:79912344-79912363 None:intergenic 30.0%
TTTAAGAATAAAGGCAGCTT+TGG + chr4_4:79912380-79912399 Msa0706790:intron 30.0%
AAAAGCAATCTTCTACCAAA+TGG - chr4_4:79912513-79912532 None:intergenic 30.0%
AGAAAATGGATGTAGGTATT+AGG + chr4_4:79912536-79912555 Msa0706790:intron 30.0%
TGAGATGTATTCACATAATG+TGG - chr4_4:79912589-79912608 None:intergenic 30.0%
GAACTAAAATTGCAAGTTAG+TGG - chr4_4:79912661-79912680 None:intergenic 30.0%
TTTAAATGAAATCAATGGCG+TGG - chr4_4:79912683-79912702 None:intergenic 30.0%
TTTCATACACTGTCTATAAC+GGG - chr4_4:79912757-79912776 None:intergenic 30.0%
! TTTCTGACTTTGTTGTGAAA+TGG + chr4_4:79912951-79912970 Msa0706790:three_prime_UTR 30.0%
TTCCCAATTATGATCTTGAA+GGG - chr4_4:79913039-79913058 None:intergenic 30.0%
ATTCCCAATTATGATCTTGA+AGG - chr4_4:79913040-79913059 None:intergenic 30.0%
TCAAGATCATAATTGGGAAT+AGG + chr4_4:79913040-79913059 Msa0706790:three_prime_UTR 30.0%
AAGGTCAAAAATTTCTTCAG+AGG + chr4_4:79913085-79913104 Msa0706790:three_prime_UTR 30.0%
TGTTCAGTAGTTGTATCTTA+TGG + chr4_4:79913237-79913256 Msa0706790:three_prime_UTR 30.0%
ATGGAATATATTCTTCTGCA+AGG + chr4_4:79913256-79913275 Msa0706790:three_prime_UTR 30.0%
AAAGAATAGCGTAGTAGTGA+TGG + chr4_4:79909912-79909931 Msa0706790:exon 35.0%
! GGCATTAGATTCAACGATTT+TGG - chr4_4:79910064-79910083 None:intergenic 35.0%
GTTAATCTCACTATCAACAG+AGG + chr4_4:79910099-79910118 Msa0706790:CDS 35.0%
CCACTAGTAACTTCATAATC+TGG - chr4_4:79910195-79910214 None:intergenic 35.0%
CCAGATTATGAAGTTACTAG+TGG + chr4_4:79910192-79910211 Msa0706790:CDS 35.0%
!!! AGTGGTAGTGTTGTTTTCAA+AGG + chr4_4:79910210-79910229 Msa0706790:CDS 35.0%
!!! GTGGTAGTGTTGTTTTCAAA+GGG + chr4_4:79910211-79910230 Msa0706790:CDS 35.0%
!!! TGGTAGTGTTGTTTTCAAAG+GGG + chr4_4:79910212-79910231 Msa0706790:CDS 35.0%
! AGGGGAAAATTTGCTTGAAA+TGG + chr4_4:79910230-79910249 Msa0706790:CDS 35.0%
ACTCATGAAAAGACCTTCAA+GGG - chr4_4:79910271-79910290 None:intergenic 35.0%
AACTCATGAAAAGACCTTCA+AGG - chr4_4:79910272-79910291 None:intergenic 35.0%
CGTTGTTATCCTTGATATTG+TGG + chr4_4:79910423-79910442 Msa0706790:intron 35.0%
TTTATGGACGTAAACATCTG+TGG + chr4_4:79910593-79910612 Msa0706790:intron 35.0%
TTATGGACGTAAACATCTGT+GGG + chr4_4:79910594-79910613 Msa0706790:intron 35.0%
! AAACATCTGTGGGATTGTTT+TGG + chr4_4:79910604-79910623 Msa0706790:intron 35.0%
GCATAAGTACTTGATTAAGC+TGG + chr4_4:79910825-79910844 Msa0706790:intron 35.0%
ATTAAGCTGGTTATCCAGAT+AGG + chr4_4:79910838-79910857 Msa0706790:intron 35.0%
TTAAGCTGGTTATCCAGATA+GGG + chr4_4:79910839-79910858 Msa0706790:intron 35.0%
CCAATTAAGTCGCAAAATCA+AGG - chr4_4:79910916-79910935 None:intergenic 35.0%
! CCTTGATTTTGCGACTTAAT+TGG + chr4_4:79910913-79910932 Msa0706790:intron 35.0%
CAAGTCAGAAACCGTAAAAA+AGG - chr4_4:79910972-79910991 None:intergenic 35.0%
CTCAATAGAAATGTCAACGA+AGG + chr4_4:79911071-79911090 Msa0706790:CDS 35.0%
TCATCAACAGAGAATTCTCT+GGG - chr4_4:79911241-79911260 None:intergenic 35.0%
ATCATCAACAGAGAATTCTC+TGG - chr4_4:79911242-79911261 None:intergenic 35.0%
ACTTACCATAACATGGACAT+GGG - chr4_4:79911303-79911322 None:intergenic 35.0%
AACTTACCATAACATGGACA+TGG - chr4_4:79911304-79911323 None:intergenic 35.0%
! TTTCCTCTCCTTAAGTTTTG+AGG + chr4_4:79911423-79911442 Msa0706790:intron 35.0%
TTTCCTCAAAACTTAAGGAG+AGG - chr4_4:79911429-79911448 None:intergenic 35.0%
! CCCATTTTCCTCAAAACTTA+AGG - chr4_4:79911434-79911453 None:intergenic 35.0%
ACAAATGGAAAGTAGCTGAA+GGG - chr4_4:79911484-79911503 None:intergenic 35.0%
TCCATTTGTGTGAATGTACT+CGG + chr4_4:79911495-79911514 Msa0706790:intron 35.0%
!! AATGTACTCGGTTTTAGCAA+AGG + chr4_4:79911507-79911526 Msa0706790:intron 35.0%
TATACTTGCATCTTATGGGA+AGG + chr4_4:79911613-79911632 Msa0706790:intron 35.0%
ACAATAGAACACCGTTGTTT+AGG + chr4_4:79911839-79911858 Msa0706790:intron 35.0%
TCTCATAGATGCCTAAACAA+CGG - chr4_4:79911853-79911872 None:intergenic 35.0%
ATAAAGGCCAGACATATACT+AGG - chr4_4:79912004-79912023 None:intergenic 35.0%
! TAGTATATGTCTGGCCTTTA+TGG + chr4_4:79912003-79912022 Msa0706790:intron 35.0%
! GACCTACTTTCTTTAGGAAA+TGG - chr4_4:79912086-79912105 None:intergenic 35.0%
CCGTGGTTAATTCATAGTAT+TGG + chr4_4:79912213-79912232 Msa0706790:intron 35.0%
!! TAATGGTTTAGGTGCTGATT+TGG + chr4_4:79912302-79912321 Msa0706790:intron 35.0%
CGTAGCTAGCAGAAAATATA+TGG - chr4_4:79912345-79912364 None:intergenic 35.0%
GTATACAGACGATCTAATTC+AGG - chr4_4:79912470-79912489 None:intergenic 35.0%
ATGCTCATTTATTGGCCATT+TGG + chr4_4:79912495-79912514 Msa0706790:intron 35.0%
GTCTATCTCAAATCATGCTA+TGG - chr4_4:79912632-79912651 None:intergenic 35.0%
TTCATACACTGTCTATAACG+GGG - chr4_4:79912756-79912775 None:intergenic 35.0%
CTTCTAAACTATCAGGACAA+CGG + chr4_4:79912827-79912846 Msa0706790:intron 35.0%
CAATTGCATCTACCATAGAT+AGG - chr4_4:79912874-79912893 None:intergenic 35.0%
ATCTATGGTAGATGCAATTG+AGG + chr4_4:79912874-79912893 Msa0706790:CDS 35.0%
TTCACAACAAAGTCAGAAAG+CGG - chr4_4:79912950-79912969 None:intergenic 35.0%
ATCCCCTTCAAGATCATAAT+TGG + chr4_4:79913033-79913052 Msa0706790:three_prime_UTR 35.0%
TCCCCTTCAAGATCATAATT+GGG + chr4_4:79913034-79913053 Msa0706790:three_prime_UTR 35.0%
TCCCAATTATGATCTTGAAG+GGG - chr4_4:79913038-79913057 None:intergenic 35.0%
!!! TTCAGAGGTACTTTTGCATT+TGG + chr4_4:79913100-79913119 Msa0706790:three_prime_UTR 35.0%
!!! TCAGAGGTACTTTTGCATTT+GGG + chr4_4:79913101-79913120 Msa0706790:three_prime_UTR 35.0%
GAAATTTATTGCCTCCTTAC+CGG + chr4_4:79913289-79913308 Msa0706790:three_prime_UTR 35.0%
CAATTATACTAGTACGCTTC+CGG - chr4_4:79913311-79913330 None:intergenic 35.0%
GAGAGAGAGAGAGAGAAAAA+AGG + chr4_4:79909858-79909877 Msa0706790:five_prime_UTR 40.0%
GGAGAAGAACGGAATTGAAA+TGG - chr4_4:79909958-79909977 None:intergenic 40.0%
! TGTGTGATTTGGGAGAAGAA+CGG - chr4_4:79909969-79909988 None:intergenic 40.0%
CACGCTATCATGGGAAAAAA+CGG + chr4_4:79910129-79910148 Msa0706790:CDS 40.0%
ATCATGGGAAAAAACGGTTC+TGG + chr4_4:79910135-79910154 Msa0706790:CDS 40.0%
!! TGGTAAAAGCACTTTCGCTA+AGG + chr4_4:79910155-79910174 Msa0706790:CDS 40.0%
ACTTTCGCTAAGGTTCTTGT+GGG + chr4_4:79910165-79910184 Msa0706790:CDS 40.0%
AATGCTCGGAGAAAGAAACT+TGG + chr4_4:79910351-79910370 Msa0706790:CDS 40.0%
! AAACTTGGTCTTCCTGAACT+TGG + chr4_4:79910366-79910385 Msa0706790:CDS 40.0%
!!! GGATTGTTTTGGAGAGCTTT+TGG + chr4_4:79910615-79910634 Msa0706790:intron 40.0%
TAAAAAAGGGCTACACACAG+TGG - chr4_4:79910958-79910977 None:intergenic 40.0%
!!! CTGTGTGTAGCCCTTTTTTA+CGG + chr4_4:79910958-79910977 Msa0706790:intron 40.0%
AATGTCAACGAAGGGTTTAG+TGG + chr4_4:79911080-79911099 Msa0706790:CDS 40.0%
! ATCTTGCAGCTTGCAGTTTT+GGG + chr4_4:79911125-79911144 Msa0706790:CDS 40.0%
!! GGATGAAATTGATTCGGGAT+TGG + chr4_4:79911166-79911185 Msa0706790:CDS 40.0%
CATCAACAGAGAATTCTCTG+GGG - chr4_4:79911240-79911259 None:intergenic 40.0%
TCAGTCTCAGACTTTAAGTG+AGG + chr4_4:79911381-79911400 Msa0706790:intron 40.0%
!! TTTTGAGGAAAATGGGGTTC+AGG + chr4_4:79911438-79911457 Msa0706790:intron 40.0%
! GGGTTCAGGTGCTTAATTTT+AGG + chr4_4:79911452-79911471 Msa0706790:intron 40.0%
CACAAATGGAAAGTAGCTGA+AGG - chr4_4:79911485-79911504 None:intergenic 40.0%
ACCGAGTACATTCACACAAA+TGG - chr4_4:79911499-79911518 None:intergenic 40.0%
GTTGTTTAGGCATCTATGAG+AGG + chr4_4:79911852-79911871 Msa0706790:intron 40.0%
ATCTGATCTTCTCTCCCTAT+CGG - chr4_4:79911891-79911910 None:intergenic 40.0%
GGTAGATCAAGGAAAACCAT+TGG + chr4_4:79911933-79911952 Msa0706790:intron 40.0%
CTCTGATCCTAGTATATGTC+TGG + chr4_4:79911994-79912013 Msa0706790:intron 40.0%
GTGGGTTCATCTACATTGAA+GGG - chr4_4:79912035-79912054 None:intergenic 40.0%
ACTTCAGCTGATAATCCTCT+AGG - chr4_4:79912057-79912076 None:intergenic 40.0%
! ACATTATCCTTTGAGGGACT+GGG - chr4_4:79912130-79912149 None:intergenic 40.0%
! AACATTATCCTTTGAGGGAC+TGG - chr4_4:79912131-79912150 None:intergenic 40.0%
!! CTGATTTGGCAACTTTAGCA+GGG + chr4_4:79912316-79912335 Msa0706790:intron 40.0%
! GACTTTGTTGTGAAATGGTG+TGG + chr4_4:79912956-79912975 Msa0706790:three_prime_UTR 40.0%
!!! CAGAGGTACTTTTGCATTTG+GGG + chr4_4:79913102-79913121 Msa0706790:three_prime_UTR 40.0%
TTCTTCTGCAAGGATGAGTT+TGG + chr4_4:79913266-79913285 Msa0706790:three_prime_UTR 40.0%
TCTTCTGCAAGGATGAGTTT+GGG + chr4_4:79913267-79913286 Msa0706790:three_prime_UTR 40.0%
!! AAGATCGTTGACTTGGAGGA+GGG - chr4_4:79910037-79910056 None:intergenic 45.0%
TCTAATGCCGAAATTCTCCG+CGG + chr4_4:79910075-79910094 Msa0706790:CDS 45.0%
ATTAACGCCGCGGAGAATTT+CGG - chr4_4:79910085-79910104 None:intergenic 45.0%
! TGATAGTGAGATTAACGCCG+CGG - chr4_4:79910095-79910114 None:intergenic 45.0%
AGGCGAAATTCACGCTATCA+TGG + chr4_4:79910119-79910138 Msa0706790:CDS 45.0%
GGCGAAATTCACGCTATCAT+GGG + chr4_4:79910120-79910139 Msa0706790:CDS 45.0%
CACTTTCGCTAAGGTTCTTG+TGG + chr4_4:79910164-79910183 Msa0706790:CDS 45.0%
CAATCACCTGTTGCAATTCC+TGG + chr4_4:79910294-79910313 Msa0706790:CDS 45.0%
GAAACACCAGGAATTGCAAC+AGG - chr4_4:79910303-79910322 None:intergenic 45.0%
AACTGCATTTAGGCCCTATC+TGG - chr4_4:79910855-79910874 None:intergenic 45.0%
TGCATGCCTGACTGCAATTA+AGG - chr4_4:79910885-79910904 None:intergenic 45.0%
! GATCTTGCAGCTTGCAGTTT+TGG + chr4_4:79911124-79911143 Msa0706790:CDS 45.0%
! TCTTGCAGCTTGCAGTTTTG+GGG + chr4_4:79911126-79911145 Msa0706790:CDS 45.0%
ATTGGATGTTGATGCGCTCA+GGG + chr4_4:79911184-79911203 Msa0706790:CDS 45.0%
ACCATAACATGGACATGGGA+GGG - chr4_4:79911299-79911318 None:intergenic 45.0%
TACCATAACATGGACATGGG+AGG - chr4_4:79911300-79911319 None:intergenic 45.0%
CACGACATCACTTGGTACAA+TGG - chr4_4:79911719-79911738 None:intergenic 45.0%
GTTCATCTACATTGAAGGGC+CGG - chr4_4:79912031-79912050 None:intergenic 45.0%
! GGTGGGTTCATCTACATTGA+AGG - chr4_4:79912036-79912055 None:intergenic 45.0%
ATGTAGATGAACCCACCTAG+AGG + chr4_4:79912039-79912058 Msa0706790:intron 45.0%
CAGCTGATAATCCTCTAGGT+GGG - chr4_4:79912053-79912072 None:intergenic 45.0%
TCAGCTGATAATCCTCTAGG+TGG - chr4_4:79912054-79912073 None:intergenic 45.0%
TTAGTTTCCCAGTCCCTCAA+AGG + chr4_4:79912120-79912139 Msa0706790:intron 45.0%
!! GCTGATTTGGCAACTTTAGC+AGG + chr4_4:79912315-79912334 Msa0706790:intron 45.0%
AGGACAACGGAAGAATTGCA+AGG + chr4_4:79912840-79912859 Msa0706790:intron 45.0%
AACGGAAGAATTGCAAGGAC+AGG + chr4_4:79912845-79912864 Msa0706790:CDS 45.0%
GTAGATGCAATTGAGGCAGA+TGG + chr4_4:79912881-79912900 Msa0706790:CDS 45.0%
TGAGGCAGATGGATATGAAC+TGG + chr4_4:79912892-79912911 Msa0706790:CDS 45.0%
TTGTTGTGAAATGGTGTGGC+TGG + chr4_4:79912960-79912979 Msa0706790:three_prime_UTR 45.0%
!! TGAAATGGTGTGGCTGGTTT+CGG + chr4_4:79912966-79912985 Msa0706790:three_prime_UTR 45.0%
! TGCTGTCAAGTTGCACAAGT+TGG + chr4_4:79912999-79913018 Msa0706790:three_prime_UTR 45.0%
! AGGTACTTTTGCATTTGGGG+TGG + chr4_4:79913105-79913124 Msa0706790:three_prime_UTR 45.0%
!! GGTACTTTTGCATTTGGGGT+GGG + chr4_4:79913106-79913125 Msa0706790:three_prime_UTR 45.0%
!! GTACTTTTGCATTTGGGGTG+GGG + chr4_4:79913107-79913126 Msa0706790:three_prime_UTR 45.0%
CCAGAACAGTACTGTCATCT+GGG - chr4_4:79913212-79913231 None:intergenic 45.0%
CCAGATGACAGTACTGTTCT+GGG + chr4_4:79913210-79913229 Msa0706790:three_prime_UTR 45.0%
ATACTAGTACGCTTCCGGTA+AGG - chr4_4:79913306-79913325 None:intergenic 45.0%
!!! TCATTTTATTTTATTTTTTA+TGG - chr4_4:79911798-79911817 None:intergenic 5.0%
!!! TTTTTTTTTTTTAAGAATAA+AGG + chr4_4:79912371-79912390 Msa0706790:intron 5.0%
TTGCGGCGAGTGTGTGATTT+GGG - chr4_4:79909979-79909998 None:intergenic 50.0%
TTTGCGGCGAGTGTGTGATT+TGG - chr4_4:79909980-79909999 None:intergenic 50.0%
!! AGATCGTTGACTTGGAGGAG+GGG - chr4_4:79910036-79910055 None:intergenic 50.0%
!! GAAGATCGTTGACTTGGAGG+AGG - chr4_4:79910038-79910057 None:intergenic 50.0%
!! CTCGAAGATCGTTGACTTGG+AGG - chr4_4:79910041-79910060 None:intergenic 50.0%
! TGGCTCGAAGATCGTTGACT+TGG - chr4_4:79910044-79910063 None:intergenic 50.0%
CCTTCAAGGGCTCTTTCTTC+AGG - chr4_4:79910258-79910277 None:intergenic 50.0%
CCTGAAGAAAGAGCCCTTGA+AGG + chr4_4:79910255-79910274 Msa0706790:CDS 50.0%
! GGGCCTAAATGCAGTTGATG+CGG + chr4_4:79910859-79910878 Msa0706790:intron 50.0%
AGGCCGCATCAACTGCATTT+AGG - chr4_4:79910865-79910884 None:intergenic 50.0%
ATGCGGCCTTAATTGCAGTC+AGG + chr4_4:79910876-79910895 Msa0706790:intron 50.0%
AAGGGCTACACACAGTGGTT+TGG - chr4_4:79910953-79910972 None:intergenic 50.0%
GTCAACGAAGGGTTTAGTGG+AGG + chr4_4:79911083-79911102 Msa0706790:CDS 50.0%
!! CTTGCAGCTTGCAGTTTTGG+GGG + chr4_4:79911127-79911146 Msa0706790:CDS 50.0%
!!! TGCAGTTTTGGGGGCAGATT+TGG + chr4_4:79911136-79911155 Msa0706790:CDS 50.0%
! GGGGGCAGATTTGGCTATTT+TGG + chr4_4:79911145-79911164 Msa0706790:CDS 50.0%
GATTGGATGTTGATGCGCTC+AGG + chr4_4:79911183-79911202 Msa0706790:CDS 50.0%
ACCCTCCCATGTCCATGTTA+TGG + chr4_4:79911295-79911314 Msa0706790:CDS 50.0%
GGCATCTATGAGAGGACATG+TGG + chr4_4:79911860-79911879 Msa0706790:intron 50.0%
!! GACATGTGGAAGCACCGATA+GGG + chr4_4:79911874-79911893 Msa0706790:intron 50.0%
! ATGTCTGGCCTTTATGGCAC+CGG + chr4_4:79912009-79912028 Msa0706790:intron 50.0%
! CACTGTCTATAACGGGGATC+AGG - chr4_4:79912750-79912769 None:intergenic 50.0%
AAGGACAGGCGACCTATCTA+TGG + chr4_4:79912859-79912878 Msa0706790:CDS 50.0%
CCCAGATGACAGTACTGTTC+TGG + chr4_4:79913209-79913228 Msa0706790:three_prime_UTR 50.0%
CCCAGAACAGTACTGTCATC+TGG - chr4_4:79913213-79913232 None:intergenic 50.0%
CCGCAAAGCAGGCGAATTTG+CGG - chr4_4:79909996-79910015 None:intergenic 55.0%
CCGCAAATTCGCCTGCTTTG+CGG + chr4_4:79909993-79910012 Msa0706790:CDS 55.0%
CAAATTCGCCTGCTTTGCGG+CGG + chr4_4:79909996-79910015 Msa0706790:CDS 55.0%
TCCTGAACTTGGACCCCTTG+AGG + chr4_4:79910377-79910396 Msa0706790:CDS 55.0%
ACCTCAAGGGGTCCAAGTTC+AGG - chr4_4:79910381-79910400 None:intergenic 55.0%
TGTTGATGCGCTCAGGGATG+TGG + chr4_4:79911190-79911209 Msa0706790:CDS 55.0%
!! GGACATGTGGAAGCACCGAT+AGG + chr4_4:79911873-79911892 Msa0706790:intron 55.0%
!! TTGAAGGGCCGGTGCCATAA+AGG - chr4_4:79912020-79912039 None:intergenic 55.0%
CTAGTACGCTTCCGGTAAGG+AGG - chr4_4:79913303-79913322 None:intergenic 55.0%
GACTTGGAGGAGGGGAACCT+CGG - chr4_4:79910028-79910047 None:intergenic 60.0%
GCTCAGGGATGTGGCAAGTG+CGG + chr4_4:79911199-79911218 Msa0706790:CDS 60.0%
GGTGCTCGCCGCCGCAAAGC+AGG - chr4_4:79910007-79910026 None:intergenic 75.0%
! CTTTGCGGCGGCGAGCACCG+AGG + chr4_4:79910008-79910027 Msa0706790:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 79909839 79913389 79909839 ID=Msa0706790;Name=Msa0706790
chr4_4 mRNA 79909839 79913389 79909839 ID=Msa0706790-mRNA-1;Parent=Msa0706790;Name=Msa0706790-mRNA-1;_AED=0.01;_eAED=0.01;_QI=92|1|1|1|1|1|3|458|285
chr4_4 exon 79909839 79910398 79909839 ID=Msa0706790-mRNA-1:exon:25777;Parent=Msa0706790-mRNA-1
chr4_4 exon 79911017 79911316 79911017 ID=Msa0706790-mRNA-1:exon:25778;Parent=Msa0706790-mRNA-1
chr4_4 exon 79912842 79913389 79912842 ID=Msa0706790-mRNA-1:exon:25779;Parent=Msa0706790-mRNA-1
chr4_4 five_prime_UTR 79909839 79909930 79909839 ID=Msa0706790-mRNA-1:five_prime_utr;Parent=Msa0706790-mRNA-1
chr4_4 CDS 79909931 79910398 79909931 ID=Msa0706790-mRNA-1:cds;Parent=Msa0706790-mRNA-1
chr4_4 CDS 79911017 79911316 79911017 ID=Msa0706790-mRNA-1:cds;Parent=Msa0706790-mRNA-1
chr4_4 CDS 79912842 79912931 79912842 ID=Msa0706790-mRNA-1:cds;Parent=Msa0706790-mRNA-1
chr4_4 three_prime_UTR 79912932 79913389 79912932 ID=Msa0706790-mRNA-1:three_prime_utr;Parent=Msa0706790-mRNA-1
Gene Sequence

>Msa0706790

ATGGCTGTTTCATCACTCTCTCTTCCATTTCAATTCCGTTCTTCTCCCAAATCACACACTCGCCGCAAATTCGCCTGCTTTGCGGCGGCGAGCACCGAGGTTCCCCTCCTCCAAGTCAACGATCTTCGAGCCAAAATCGTTGAATCTAATGCCGAAATTCTCCGCGGCGTTAATCTCACTATCAACAGAGGCGAAATTCACGCTATCATGGGAAAAAACGGTTCTGGTAAAAGCACTTTCGCTAAGGTTCTTGTGGGTCATCCAGATTATGAAGTTACTAGTGGTAGTGTTGTTTTCAAAGGGGAAAATTTGCTTGAAATGGAACCTGAAGAAAGAGCCCTTGAAGGTCTTTTCATGAGTTTTCAATCACCTGTTGCAATTCCTGGTGTTTCAAATGATCAATTTCTTGTTATGGCTTATAATGCTCGGAGAAAGAAACTTGGTCTTCCTGAACTTGGACCCCTTGAGTGTTTTTCTTATTTAATGGAGAAGCTACAACTTGTTAACATGAAGCCTGACTTTCTCAATAGAAATGTCAACGAAGGGTTTAGTGGAGGTGAACGAAAACGCAATGAGATCTTGCAGCTTGCAGTTTTGGGGGCAGATTTGGCTATTTTGGATGAAATTGATTCGGGATTGGATGTTGATGCGCTCAGGGATGTGGCAAGTGCGGTTAATAAAATTCTTACCCCAGAGAATTCTCTGTTGATGATTACTCACTATCGGCGAATTCTTGATCTTTTGAAACCCTCCCATGTCCATGTTATGGACAACGGAAGAATTGCAAGGACAGGCGACCTATCTATGGTAGATGCAATTGAGGCAGATGGATATGAACTGGTCTCTGTTTTAACTTAA

Protein sequence

>Msa0706790

MAVSSLSLPFQFRSSPKSHTRRKFACFAAASTEVPLLQVNDLRAKIVESNAEILRGVNLTINRGEIHAIMGKNGSGKSTFAKVLVGHPDYEVTSGSVVFKGENLLEMEPEERALEGLFMSFQSPVAIPGVSNDQFLVMAYNARRKKLGLPELGPLECFSYLMEKLQLVNMKPDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVASAVNKILTPENSLLMITHYRRILDLLKPSHVHVMDNGRIARTGDLSMVDAIEADGYELVSVLT*