AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0522820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0522820 MtrunA17_Chr3g0141571 98.206 223 4 0 1 223 1 223 1.39e-159 440
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0522820 AT5G42765.1 57.143 196 75 2 36 223 35 229 1.21e-74 226

Find 63 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAATTTGAGCAAGGAATT+AGG 0.146582 3_4:-76131934 Msa0522820:CDS
TCGCGGTGTGTTTCTCTTTC+GGG 0.162800 3_4:+76135359 None:intergenic
TTCGCGGTGTGTTTCTCTTT+CGG 0.258048 3_4:+76135358 None:intergenic
GTCATTTAAGTACGTGCTTC+TGG 0.264445 3_4:-76131779 Msa0522820:three_prime_UTR
CAAATTTGAGCAAGGAATTA+GGG 0.295865 3_4:-76131933 Msa0522820:CDS
CTTTGCTAGATAATCTTATA+AGG 0.329612 3_4:-76134119 Msa0522820:intron
GGAAAATTGCGCGGTGGCGG+TGG 0.383383 3_4:+76135257 None:intergenic
GAAAATGTGAGAAGAGGAAA+GGG 0.391368 3_4:+76135212 None:intergenic
ATGCACAGGTGTGCACATTT+CGG 0.409608 3_4:-76134206 Msa0522820:intron
AGCTATTCAGATCTGCTGCC+AGG 0.418971 3_4:-76134783 Msa0522820:CDS
ATCCTCTGGGACACAATCCC+TGG 0.420882 3_4:+76134765 None:intergenic
GAAAGGGGAAGGTTACGTTT+TGG 0.426235 3_4:+76135228 None:intergenic
CCTCAACTCCGGTGTTAGCT+TGG 0.430121 3_4:+76134722 None:intergenic
GCAAAGGCATAGCAGGAGTT+AGG 0.431341 3_4:-76135410 Msa0522820:five_prime_UTR
ATTTGCCAGCCCACTGATAG+AGG 0.436497 3_4:+76132273 None:intergenic
AGCCTCCTTGCTTGGAAAGA+AGG 0.453221 3_4:-76134166 Msa0522820:CDS
CCTGCCTCCGCCATTGACAT+TGG 0.453752 3_4:-76135144 Msa0522820:CDS
AAGATTATCTAGCAAAGCTT+CGG 0.455272 3_4:+76134125 None:intergenic
ACGAAAGAATTCCTATCCTC+TGG 0.460313 3_4:+76134751 None:intergenic
AAGAATGCAGCCTCCTTGCT+TGG 0.468358 3_4:-76134174 Msa0522820:CDS
CCAATGTCAATGGCGGAGGC+AGG 0.469297 3_4:+76135144 None:intergenic
ATTGCTTGCCTTATCTTTCG+CGG 0.477053 3_4:+76135342 None:intergenic
GAGGGAAAATTGCGCGGTGG+CGG 0.481339 3_4:+76135254 None:intergenic
TTTCAGCAGGACCAAAGGAT+TGG 0.485707 3_4:-76135041 Msa0522820:intron
GAAACACACCGCGAAAGATA+AGG 0.491074 3_4:-76135350 Msa0522820:five_prime_UTR
AATGGAAGCAAAGGCATAGC+AGG 0.495715 3_4:-76135417 Msa0522820:five_prime_UTR
TTATTTACAGTCAGATTTCG+AGG 0.508821 3_4:+76131842 None:intergenic
TTATTTACAGTCAGATTTCG+AGG 0.508821 3_4:+76131906 None:intergenic
GCTGCTGGTAACGGCATTGT+TGG 0.509788 3_4:+76135309 None:intergenic
GACAGGAGCAAGTAGAAACT+TGG 0.510332 3_4:+76134993 None:intergenic
CAAAATAGCAGATGCTGTAT+CGG 0.511930 3_4:-76131975 Msa0522820:CDS
CATAGCAGGAGTTAGGACTT+AGG 0.521049 3_4:-76135403 Msa0522820:five_prime_UTR
AGAAAATGTGAGAAGAGGAA+AGG 0.523134 3_4:+76135211 None:intergenic
ATCCGATGCAAGTTCAATGT+TGG 0.523773 3_4:+76132246 None:intergenic
GAAACTGTAGCTGCTGGTAA+CGG 0.528950 3_4:+76135300 None:intergenic
CTTTCACGAGAGGCATCGAC+AGG 0.534229 3_4:+76134976 None:intergenic
GCTTCGGCTTCTAACTTCAC+AGG 0.539658 3_4:+76134141 None:intergenic
CCAAGCTAACACCGGAGTTG+AGG 0.540940 3_4:-76134722 Msa0522820:intron
CTTACAGATGCCAATGTCAA+TGG 0.546752 3_4:+76135134 None:intergenic
ATTCGCCTCTATCAGTGGGC+TGG 0.549750 3_4:-76132278 Msa0522820:CDS
AACCAACATTGAACTTGCAT+CGG 0.552247 3_4:-76132248 Msa0522820:CDS
AGGATCCTTCTTTCCAAGCA+AGG 0.556645 3_4:+76134161 None:intergenic
GGGATTGTGTCCCAGAGGAT+AGG 0.557429 3_4:-76134762 Msa0522820:CDS
CGAAAGAATTCCTATCCTCT+GGG 0.559179 3_4:+76134752 None:intergenic
AGAGCAGAAACTGTAGCTGC+TGG 0.561845 3_4:+76135294 None:intergenic
GCTATTCAGATCTGCTGCCA+GGG 0.570782 3_4:-76134782 Msa0522820:CDS
GCGAGAGAAAATGTGAGAAG+AGG 0.571071 3_4:+76135206 None:intergenic
GGTGTGTTTCTCTTTCGGGT+CGG 0.581077 3_4:+76135363 None:intergenic
AGATCATTCGCCTCTATCAG+TGG 0.582090 3_4:-76132283 Msa0522820:CDS
GATGCCAATGTCAATGGCGG+AGG 0.585232 3_4:+76135140 None:intergenic
TGTGAGAAGAGGAAAGGGGA+AGG 0.601169 3_4:+76135217 None:intergenic
TCTCTCGACAAATTTGAGCA+AGG 0.604357 3_4:-76131941 Msa0522820:CDS
GATCATTCGCCTCTATCAGT+GGG 0.609222 3_4:-76132282 Msa0522820:CDS
AGAGCGAAGGCTTTCACGAG+AGG 0.617224 3_4:+76134966 None:intergenic
GTAGCTTTCCAAGCTAACAC+CGG 0.624252 3_4:-76134730 Msa0522820:CDS
ACATTGAACTTGCATCGGAT+AGG 0.626460 3_4:-76132243 Msa0522820:intron
AAAATGTGAGAAGAGGAAAG+GGG 0.629256 3_4:+76135213 None:intergenic
ACAAAGACAAACCTCAACTC+CGG 0.639797 3_4:+76134711 None:intergenic
ATCCTTCTTTCCAAGCAAGG+AGG 0.665711 3_4:+76134164 None:intergenic
ACAGATGCCAATGTCAATGG+CGG 0.683825 3_4:+76135137 None:intergenic
TGGAGGGAGGGAAAATTGCG+CGG 0.683829 3_4:+76135248 None:intergenic
TGCCAGGGATTGTGTCCCAG+AGG 0.697985 3_4:-76134767 Msa0522820:CDS
AGGGAGGGAAAATTGCGCGG+TGG 0.737001 3_4:+76135251 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCAATTTTTTTTTATTTTC+AGG - chr3_4:76135152-76135171 Msa0522820:CDS 10.0%
!!! TTTTTTTTTTTTTTATGCAC+AGG - chr3_4:76132932-76132951 Msa0522820:intron 15.0%
!!! TATATCAATAGAATTGTTTT+TGG - chr3_4:76133251-76133270 Msa0522820:intron 15.0%
!! AATACAATAATATAGAAAAG+TGG + chr3_4:76133279-76133298 None:intergenic 15.0%
!! TTATTTATGATTATCATTTC+TGG - chr3_4:76135087-76135106 Msa0522820:intron 15.0%
!! ACATTGTTTCATATCTTATT+AGG - chr3_4:76132270-76132289 Msa0522820:CDS 20.0%
!! CATTGTTTCATATCTTATTA+GGG - chr3_4:76132271-76132290 Msa0522820:CDS 20.0%
!! TTGTTATCTATTAGACTTAA+TGG - chr3_4:76132826-76132845 Msa0522820:intron 20.0%
!! TGTTATCTATTAGACTTAAT+GGG - chr3_4:76132827-76132846 Msa0522820:intron 20.0%
!! TATAAGGAGAAAAATTTAGA+AGG - chr3_4:76133717-76133736 Msa0522820:intron 20.0%
!! ATAAGGAGAAAAATTTAGAA+GGG - chr3_4:76133718-76133737 Msa0522820:intron 20.0%
!! TATAAGGAGAAAAATTTAGA+AGG - chr3_4:76133717-76133736 Msa0522820:intron 20.0%
!! ATAAGGAGAAAAATTTAGAA+GGG - chr3_4:76133718-76133737 Msa0522820:intron 20.0%
!!! AGAGTAGAAATTGATTTAAT+TGG + chr3_4:76134520-76134539 None:intergenic 20.0%
!!! GGAAGTATACAAAAAAAAAA+AGG + chr3_4:76134679-76134698 None:intergenic 20.0%
!! ATCAAAGGATATTAAAAAGA+GGG + chr3_4:76134775-76134794 None:intergenic 20.0%
!!! ATTTTCTTTATGCTATCATT+TGG - chr3_4:76134993-76135012 Msa0522820:CDS 20.0%
!!! AAACTTTGAAGATGAATAAA+GGG + chr3_4:76135057-76135076 None:intergenic 20.0%
!!! AAAACTTTGAAGATGAATAA+AGG + chr3_4:76135058-76135077 None:intergenic 20.0%
!! TAAAAAAAAATTGATTGCAG+AGG + chr3_4:76135147-76135166 None:intergenic 20.0%
! ATGATTCAAAATACAGTAAC+AGG + chr3_4:76132069-76132088 None:intergenic 25.0%
! AAAAACGGTAACAAAAGTTA+GGG + chr3_4:76132094-76132113 None:intergenic 25.0%
! AATCAATGTCTTGCTAATTA+GGG - chr3_4:76132497-76132516 Msa0522820:intron 25.0%
!!! TATTTTTTTAGGAGAGTGAA+TGG - chr3_4:76132648-76132667 Msa0522820:intron 25.0%
! TTATCTACCTTTCAATTGTT+TGG + chr3_4:76132737-76132756 None:intergenic 25.0%
! GTTATCTATTAGACTTAATG+GGG - chr3_4:76132828-76132847 Msa0522820:intron 25.0%
! CTTTGCTAGATAATCTTATA+AGG - chr3_4:76133033-76133052 Msa0522820:intron 25.0%
! GAAATATTCAGTGTAAAGAA+AGG + chr3_4:76133122-76133141 None:intergenic 25.0%
! TTAATGTCAAAAACTCTTGA+TGG - chr3_4:76133466-76133485 Msa0522820:intron 25.0%
! TTGATAAAGAGAATGAAGTT+GGG + chr3_4:76133506-76133525 None:intergenic 25.0%
! ATTGATAAAGAGAATGAAGT+TGG + chr3_4:76133507-76133526 None:intergenic 25.0%
! TCTCTTTATCAATATGATGT+AGG - chr3_4:76133514-76133533 Msa0522820:intron 25.0%
! TTCACCTTCAAAAGAAATTT+CGG + chr3_4:76133849-76133868 None:intergenic 25.0%
! AGTAACAAAGTTAATATGCT+CGG + chr3_4:76134046-76134065 None:intergenic 25.0%
! TTAATGTCAAAAACTCTTGA+TGG - chr3_4:76133466-76133485 Msa0522820:intron 25.0%
!!! GATGGACTATTAACTATAAT+AGG + chr3_4:76134477-76134496 None:intergenic 25.0%
!!! ATAGTTCTTGTATTTTGAGA+TGG + chr3_4:76134495-76134514 None:intergenic 25.0%
! CTATTCTGTAGATTAAACAT+TGG - chr3_4:76134647-76134666 Msa0522820:intron 25.0%
! TAGCACATAGGAAATTTAAA+GGG + chr3_4:76134700-76134719 None:intergenic 25.0%
! TTAGCACATAGGAAATTTAA+AGG + chr3_4:76134701-76134720 None:intergenic 25.0%
! CATCAAAGGATATTAAAAAG+AGG + chr3_4:76134776-76134795 None:intergenic 25.0%
!! AGTCATTCATTTGATAATCT+CGG + chr3_4:76135122-76135141 None:intergenic 25.0%
! TCAAATTTGAAAAGTTGAAC+AGG + chr3_4:76135272-76135291 None:intergenic 25.0%
GAAAAACGGTAACAAAAGTT+AGG + chr3_4:76132095-76132114 None:intergenic 30.0%
TTATTAGGGTCTGTTTGTTT+CGG - chr3_4:76132285-76132304 Msa0522820:intron 30.0%
CAATCAATGTCTTGCTAATT+AGG - chr3_4:76132496-76132515 Msa0522820:intron 30.0%
GGATGACATAATAGGATAAT+TGG - chr3_4:76132523-76132542 Msa0522820:intron 30.0%
AACCATACCAAACAATTGAA+AGG - chr3_4:76132727-76132746 Msa0522820:intron 30.0%
TACCTTTCAATTGTTTGGTA+TGG + chr3_4:76132732-76132751 None:intergenic 30.0%
!! TAACATTCTTTTGGGAAAAG+GGG + chr3_4:76132862-76132881 None:intergenic 30.0%
!! CTAACATTCTTTTGGGAAAA+GGG + chr3_4:76132863-76132882 None:intergenic 30.0%
! ACTTGAGCTAACATTCTTTT+GGG + chr3_4:76132870-76132889 None:intergenic 30.0%
AAGATTATCTAGCAAAGCTT+CGG + chr3_4:76133030-76133049 None:intergenic 30.0%
AGTGTAAAGAAAGGATTTGA+TGG + chr3_4:76133113-76133132 None:intergenic 30.0%
!!! TTCATTATTTTTAGTCCCTG+TGG - chr3_4:76133139-76133158 Msa0522820:intron 30.0%
TCTCAAATAGTGAAGATACT+TGG + chr3_4:76133167-76133186 None:intergenic 30.0%
GAAACCAAAGTTAATATGCT+CGG + chr3_4:76133444-76133463 None:intergenic 30.0%
ATCAATATGATGTAGGACAA+AGG - chr3_4:76133521-76133540 Msa0522820:intron 30.0%
!! CAGTTTTATCTAAGAGAACA+GGG + chr3_4:76133777-76133796 None:intergenic 30.0%
!! TCAGTTTTATCTAAGAGAAC+AGG + chr3_4:76133778-76133797 None:intergenic 30.0%
TCACTAATTATCATTGTGGA+AGG + chr3_4:76133824-76133843 None:intergenic 30.0%
ATAGAGCAGCATATATACAT+AGG + chr3_4:76133314-76133333 None:intergenic 30.0%
TCTCTTTACCAATATGATGT+AGG - chr3_4:76134115-76134134 Msa0522820:intron 30.0%
GAAACGAGTGAAAAATGAAA+TGG - chr3_4:76134280-76134299 Msa0522820:intron 30.0%
GAGTGAAAAATGAAATGGTA+AGG - chr3_4:76134285-76134304 Msa0522820:intron 30.0%
AAAAATGAAATGGTAAGGAG+TGG - chr3_4:76134290-76134309 Msa0522820:intron 30.0%
!! CAGTTTTATCTAAGAGAACA+GGG + chr3_4:76133777-76133796 None:intergenic 30.0%
!! TCAGTTTTATCTAAGAGAAC+AGG + chr3_4:76133778-76133797 None:intergenic 30.0%
ATAAAACTGATTAGAGCATG+TGG - chr3_4:76134389-76134408 Msa0522820:intron 30.0%
TCACTAATTATCATTGTGGA+AGG + chr3_4:76133824-76133843 None:intergenic 30.0%
ACAATGATAATTAGTGAGAC+CGG - chr3_4:76133827-76133846 Msa0522820:intron 30.0%
TTCACCTTCAAAAGAAATTC+CGG + chr3_4:76134450-76134469 None:intergenic 30.0%
TACTTAAATTGAACCCTTCA+TGG - chr3_4:76134551-76134570 Msa0522820:intron 30.0%
GGATATTAAAAAGAGGGAAA+AGG + chr3_4:76134769-76134788 None:intergenic 30.0%
!! TTGGTAATTAGCATGCATTT+TGG + chr3_4:76134799-76134818 None:intergenic 30.0%
ATAATAGTGTCCAGGATAAT+TGG - chr3_4:76134944-76134963 Msa0522820:intron 30.0%
TAATAGTGTCCAGGATAATT+GGG - chr3_4:76134945-76134964 Msa0522820:intron 30.0%
ACAAATTTGAGCAAGGAATT+AGG - chr3_4:76135218-76135237 Msa0522820:CDS 30.0%
CAAATTTGAGCAAGGAATTA+GGG - chr3_4:76135219-76135238 Msa0522820:CDS 30.0%
TTATTTACAGTCAGATTTCG+AGG + chr3_4:76135249-76135268 None:intergenic 30.0%
! CAACTTTTCAAATTTGAGCA+AGG - chr3_4:76135275-76135294 Msa0522820:CDS 30.0%
TCAAATTTGAGCAAGGAATT+AGG - chr3_4:76135282-76135301 Msa0522820:CDS 30.0%
CAAATTTGAGCAAGGAATTA+GGG - chr3_4:76135219-76135238 Msa0522820:CDS 30.0%
TTATTTACAGTCAGATTTCG+AGG + chr3_4:76135249-76135268 None:intergenic 30.0%
AAAATGTGAGAAGAGGAAAG+GGG + chr3_4:76131942-76131961 None:intergenic 35.0%
GAAAATGTGAGAAGAGGAAA+GGG + chr3_4:76131943-76131962 None:intergenic 35.0%
AGAAAATGTGAGAAGAGGAA+AGG + chr3_4:76131944-76131963 None:intergenic 35.0%
!! TTTTGTTACCGTTTTTCAGC+AGG - chr3_4:76132098-76132117 Msa0522820:intron 35.0%
! TGTTCTTTTAGCCAATCCTT+TGG + chr3_4:76132125-76132144 None:intergenic 35.0%
GAAAAAGATAAACAGAGCGA+AGG + chr3_4:76132202-76132221 None:intergenic 35.0%
ATGTCTTGCTAATTAGGGTT+TGG - chr3_4:76132502-76132521 Msa0522820:intron 35.0%
TAGGGTTTGGATGACATAAT+AGG - chr3_4:76132515-76132534 Msa0522820:intron 35.0%
CTGATGAGTGATTCGTTATA+TGG - chr3_4:76132607-76132626 Msa0522820:intron 35.0%
!! GCTAACATTCTTTTGGGAAA+AGG + chr3_4:76132864-76132883 None:intergenic 35.0%
! CACTTGAGCTAACATTCTTT+TGG + chr3_4:76132871-76132890 None:intergenic 35.0%
TGGACACTAATTAATGCAGT+AGG + chr3_4:76133093-76133112 None:intergenic 35.0%
TGCAAAGCAAATGATTGAAC+TGG - chr3_4:76133191-76133210 Msa0522820:intron 35.0%
ATATGATGTAGGACAAAGGT+AGG - chr3_4:76133525-76133544 Msa0522820:intron 35.0%
TTAACACAAGATACAACACG+TGG - chr3_4:76133584-76133603 Msa0522820:intron 35.0%
TAACACAAGATACAACACGT+GGG - chr3_4:76133585-76133604 Msa0522820:intron 35.0%
! CATTTTCTCTCTTCTTCTCT+TGG + chr3_4:76133660-76133679 None:intergenic 35.0%
GAAACGAGTGAGAAATGAAA+TGG - chr3_4:76133679-76133698 Msa0522820:intron 35.0%
GAGTGAGAAATGAAATGGTA+AGG - chr3_4:76133684-76133703 Msa0522820:intron 35.0%
AGAAATGAAATGGTAAGGAG+TGG - chr3_4:76133689-76133708 Msa0522820:intron 35.0%
GTAAGGAGTGGCTATATATA+AGG - chr3_4:76133701-76133720 Msa0522820:intron 35.0%
AGGAGAAAAATTTAGAAGGG+AGG - chr3_4:76133721-76133740 Msa0522820:intron 35.0%
GGAGAAAAATTTAGAAGGGA+GGG - chr3_4:76133722-76133741 Msa0522820:intron 35.0%
ATAAAACTGATTAGAGCACG+TGG - chr3_4:76133788-76133807 Msa0522820:intron 35.0%
GGTCTCACTAATTATCATTG+TGG + chr3_4:76133828-76133847 None:intergenic 35.0%
! GAGACCGAAATTTCTTTTGA+AGG - chr3_4:76133842-76133861 Msa0522820:intron 35.0%
TTGGTAAAGAGAACGAAGTT+GGG + chr3_4:76134107-76134126 None:intergenic 35.0%
ATTGGTAAAGAGAACGAAGT+TGG + chr3_4:76134108-76134127 None:intergenic 35.0%
! AGCTTTGTCCTACATCATAT+TGG + chr3_4:76134126-76134145 None:intergenic 35.0%
ATATGATGTAGGACAAAGCT+AGG - chr3_4:76134126-76134145 Msa0522820:CDS 35.0%
TTAACACAAGATACAACACG+TGG - chr3_4:76133584-76133603 Msa0522820:intron 35.0%
TAACACAAGATACAACACGT+GGG - chr3_4:76133585-76133604 Msa0522820:intron 35.0%
! CATTTTCTCTCTTCTTCTCT+TGG + chr3_4:76133660-76133679 None:intergenic 35.0%
GTAAGGAGTGGCTATATATA+AGG - chr3_4:76133701-76133720 Msa0522820:intron 35.0%
GGTCTCACTAATTATCATTG+TGG + chr3_4:76133828-76133847 None:intergenic 35.0%
CGAATTATCACAACCATGAA+GGG + chr3_4:76134567-76134586 None:intergenic 35.0%
AATACACGAAGTTAGCACAT+AGG + chr3_4:76134712-76134731 None:intergenic 35.0%
CCAAATTTCGTGACATATGA+CGG - chr3_4:76134815-76134834 Msa0522820:CDS 35.0%
ACATGAGAAATATGGGAAAC+AGG + chr3_4:76134847-76134866 None:intergenic 35.0%
GATCTGCACATGAGAAATAT+GGG + chr3_4:76134854-76134873 None:intergenic 35.0%
TGATCTGCACATGAGAAATA+TGG + chr3_4:76134855-76134874 None:intergenic 35.0%
AACCAACATTGAACTTGCAT+CGG - chr3_4:76134904-76134923 Msa0522820:intron 35.0%
TATCCTGGACACTATTATTG+AGG + chr3_4:76134942-76134961 None:intergenic 35.0%
AATAGTGTCCAGGATAATTG+GGG - chr3_4:76134946-76134965 Msa0522820:intron 35.0%
! CATTTGATAATCTCGGTTAG+AGG + chr3_4:76135115-76135134 None:intergenic 35.0%
CAAAATAGCAGATGCTGTAT+CGG - chr3_4:76135177-76135196 Msa0522820:CDS 35.0%
!! ACCTGTTCAACTTTTTGAAG+TGG - chr3_4:76135332-76135351 Msa0522820:five_prime_UTR 35.0%
TCCACTTCAAAAAGTTGAAC+AGG + chr3_4:76135336-76135355 None:intergenic 35.0%
!!! GTTCAACTTTTTGAAGTGGA+AGG - chr3_4:76135336-76135355 Msa0522820:five_prime_UTR 35.0%
ATTGCTTGCCTTATCTTTCG+CGG + chr3_4:76131813-76131832 None:intergenic 40.0%
CTTACAGATGCCAATGTCAA+TGG + chr3_4:76132021-76132040 None:intergenic 40.0%
CGAAAGAATTCCTATCCTCT+GGG + chr3_4:76132403-76132422 None:intergenic 40.0%
ACGAAAGAATTCCTATCCTC+TGG + chr3_4:76132404-76132423 None:intergenic 40.0%
ACAAAGACAAACCTCAACTC+CGG + chr3_4:76132444-76132463 None:intergenic 40.0%
AACACATAGATGCTGGAAAG+TGG + chr3_4:76133062-76133081 None:intergenic 40.0%
CACTAATTAATGCAGTAGGC+AGG + chr3_4:76133089-76133108 None:intergenic 40.0%
TGAAGATACTTGGAACCACA+GGG + chr3_4:76133157-76133176 None:intergenic 40.0%
!! TTTCCAGCATCTAGTTCTTC+AGG - chr3_4:76133402-76133421 Msa0522820:intron 40.0%
CATGCCGAGCATATTAACTT+TGG - chr3_4:76133437-76133456 Msa0522820:intron 40.0%
!! TTTCCAGCATCTAGTTCTTC+AGG - chr3_4:76133402-76133421 Msa0522820:intron 40.0%
ATTAGAGCATGTGGTAACAG+TGG - chr3_4:76134398-76134417 Msa0522820:intron 40.0%
TTAGAGCATGTGGTAACAGT+GGG - chr3_4:76134399-76134418 Msa0522820:intron 40.0%
! GAGACCGGAATTTCTTTTGA+AGG - chr3_4:76134443-76134462 Msa0522820:intron 40.0%
GCGAATTATCACAACCATGA+AGG + chr3_4:76134568-76134587 None:intergenic 40.0%
TCATGGTTGTGATAATTCGC+TGG - chr3_4:76134568-76134587 Msa0522820:intron 40.0%
! GAGAGTGCAGATAATGCTTT+AGG + chr3_4:76134741-76134760 None:intergenic 40.0%
!! AGCATGCATTTTGGCATCAA+AGG + chr3_4:76134790-76134809 None:intergenic 40.0%
CCGTCATATGTCACGAAATT+TGG + chr3_4:76134818-76134837 None:intergenic 40.0%
ATCCGATGCAAGTTCAATGT+TGG + chr3_4:76134909-76134928 None:intergenic 40.0%
ACATTGAACTTGCATCGGAT+AGG - chr3_4:76134909-76134928 Msa0522820:intron 40.0%
TCTCCTCAATAATAGTGTCC+AGG - chr3_4:76134936-76134955 Msa0522820:intron 40.0%
CTAGTATACCCCAATTATCC+TGG + chr3_4:76134957-76134976 None:intergenic 40.0%
CAGGATAATTGGGGTATACT+AGG - chr3_4:76134955-76134974 Msa0522820:CDS 40.0%
CGCAAAAAGGACAACAATAC+AGG + chr3_4:76135031-76135050 None:intergenic 40.0%
GAATAAAGGGAGACGCAAAA+AGG + chr3_4:76135044-76135063 None:intergenic 40.0%
TCTCTCGACAAATTTGAGCA+AGG - chr3_4:76135211-76135230 Msa0522820:CDS 40.0%
GTCATTTAAGTACGTGCTTC+TGG - chr3_4:76135373-76135392 Msa0522820:five_prime_UTR 40.0%
CATAGCAGGAGTTAGGACTT+AGG - chr3_4:76131749-76131768 Msa0522820:three_prime_UTR 45.0%
TTCGCGGTGTGTTTCTCTTT+CGG + chr3_4:76131797-76131816 None:intergenic 45.0%
GAAACACACCGCGAAAGATA+AGG - chr3_4:76131802-76131821 Msa0522820:three_prime_UTR 45.0%
GAAACTGTAGCTGCTGGTAA+CGG + chr3_4:76131855-76131874 None:intergenic 45.0%
!!! AAGGTTACGTTTTGGAGGGA+GGG + chr3_4:76131919-76131938 None:intergenic 45.0%
! GAAAGGGGAAGGTTACGTTT+TGG + chr3_4:76131927-76131946 None:intergenic 45.0%
GCGAGAGAAAATGTGAGAAG+AGG + chr3_4:76131949-76131968 None:intergenic 45.0%
ACAGATGCCAATGTCAATGG+CGG + chr3_4:76132018-76132037 None:intergenic 45.0%
CCTTTGGTCCTGCTGAAAAA+CGG + chr3_4:76132109-76132128 None:intergenic 45.0%
TTTCAGCAGGACCAAAGGAT+TGG - chr3_4:76132111-76132130 Msa0522820:intron 45.0%
GACAGGAGCAAGTAGAAACT+TGG + chr3_4:76132162-76132181 None:intergenic 45.0%
GTAGCTTTCCAAGCTAACAC+CGG - chr3_4:76132422-76132441 Msa0522820:intron 45.0%
TTAGACGAGAGAAGCTGAGA+AGG - chr3_4:76132685-76132704 Msa0522820:intron 45.0%
AATCCCTACCCTGAATTGAG+TGG - chr3_4:76132755-76132774 Msa0522820:intron 45.0%
ATCCCTACCCTGAATTGAGT+GGG - chr3_4:76132756-76132775 Msa0522820:intron 45.0%
ATCAGTCCCCACTCAATTCA+GGG + chr3_4:76132766-76132785 None:intergenic 45.0%
TATCAGTCCCCACTCAATTC+AGG + chr3_4:76132767-76132786 None:intergenic 45.0%
ATGCACAGGTGTGCACATTT+CGG - chr3_4:76132946-76132965 Msa0522820:intron 45.0%
ATCCTTCTTTCCAAGCAAGG+AGG + chr3_4:76132991-76133010 None:intergenic 45.0%
AGGATCCTTCTTTCCAAGCA+AGG + chr3_4:76132994-76133013 None:intergenic 45.0%
AGGCTACAACACATAGATGC+TGG + chr3_4:76133069-76133088 None:intergenic 45.0%
GTGAAGATACTTGGAACCAC+AGG + chr3_4:76133158-76133177 None:intergenic 45.0%
TCACCTGAAGAACTAGATGC+TGG + chr3_4:76133408-76133427 None:intergenic 45.0%
TTGTGACTTCCTCCTTCTAC+TGG + chr3_4:76133621-76133640 None:intergenic 45.0%
GAGAACAGGGACAAAACACT+TGG + chr3_4:76133764-76133783 None:intergenic 45.0%
ATTAGAGCACGTGGTAACAG+TGG - chr3_4:76133797-76133816 Msa0522820:intron 45.0%
TTAGAGCACGTGGTAACAGT+GGG - chr3_4:76133798-76133817 Msa0522820:intron 45.0%
TCACCTGAAGAACTAGATGC+TGG + chr3_4:76133408-76133427 None:intergenic 45.0%
GGTTATCCTTCTCCAGTAGA+AGG - chr3_4:76134207-76134226 Msa0522820:intron 45.0%
TATCCTTCTCCAGTAGAAGG+AGG - chr3_4:76134210-76134229 Msa0522820:intron 45.0%
TTGTGACTTCCTCCTTCTAC+TGG + chr3_4:76133621-76133640 None:intergenic 45.0%
GAGAACAGGGACAAAACACT+TGG + chr3_4:76133764-76133783 None:intergenic 45.0%
AGATCATTCGCCTCTATCAG+TGG - chr3_4:76134869-76134888 Msa0522820:intron 45.0%
GATCATTCGCCTCTATCAGT+GGG - chr3_4:76134870-76134889 Msa0522820:intron 45.0%
!!! TTATCATTATTTATTTTTTT+AGG - chr3_4:76132637-76132656 Msa0522820:intron 5.0%
! GCAAAGGCATAGCAGGAGTT+AGG - chr3_4:76131742-76131761 Msa0522820:three_prime_UTR 50.0%
! GGTGTGTTTCTCTTTCGGGT+CGG + chr3_4:76131792-76131811 None:intergenic 50.0%
TCGCGGTGTGTTTCTCTTTC+GGG + chr3_4:76131796-76131815 None:intergenic 50.0%
AGAGCAGAAACTGTAGCTGC+TGG + chr3_4:76131861-76131880 None:intergenic 50.0%
!!! GAAGGTTACGTTTTGGAGGG+AGG + chr3_4:76131920-76131939 None:intergenic 50.0%
!! GGGGAAGGTTACGTTTTGGA+GGG + chr3_4:76131923-76131942 None:intergenic 50.0%
! AGGGGAAGGTTACGTTTTGG+AGG + chr3_4:76131924-76131943 None:intergenic 50.0%
TGTGAGAAGAGGAAAGGGGA+AGG + chr3_4:76131938-76131957 None:intergenic 50.0%
!! CCGTTTTTCAGCAGGACCAA+AGG - chr3_4:76132106-76132125 Msa0522820:intron 50.0%
! GTTTCGGTTCCTTTTCCCAG+CGG - chr3_4:76132301-76132320 Msa0522820:intron 50.0%
! TTCCTTTTCCCAGCGGAAAC+TGG - chr3_4:76132308-76132327 Msa0522820:intron 50.0%
AAGTAGCACCAGTTTCCGCT+GGG + chr3_4:76132319-76132338 None:intergenic 50.0%
TAAGTAGCACCAGTTTCCGC+TGG + chr3_4:76132320-76132339 None:intergenic 50.0%
AGCTATTCAGATCTGCTGCC+AGG - chr3_4:76132369-76132388 Msa0522820:intron 50.0%
GCTATTCAGATCTGCTGCCA+GGG - chr3_4:76132370-76132389 Msa0522820:intron 50.0%
CGAGAGAAGCTGAGAAGGTT+TGG - chr3_4:76132690-76132709 Msa0522820:intron 50.0%
TCCCTACCCTGAATTGAGTG+GGG - chr3_4:76132757-76132776 Msa0522820:intron 50.0%
TCCCCACTCAATTCAGGGTA+GGG + chr3_4:76132761-76132780 None:intergenic 50.0%
AAGAATGCAGCCTCCTTGCT+TGG - chr3_4:76132978-76132997 Msa0522820:intron 50.0%
AGCCTCCTTGCTTGGAAAGA+AGG - chr3_4:76132986-76133005 Msa0522820:intron 50.0%
GCTTCGGCTTCTAACTTCAC+AGG + chr3_4:76133014-76133033 None:intergenic 50.0%
GGTTATCCTGCTCCAGTAGA+AGG - chr3_4:76133606-76133625 Msa0522820:intron 50.0%
TATCCTGCTCCAGTAGAAGG+AGG - chr3_4:76133609-76133628 Msa0522820:intron 50.0%
CTTCCTCCTTCTACTGGAGA+AGG + chr3_4:76134216-76134235 None:intergenic 50.0%
ATTTGCCAGCCCACTGATAG+AGG + chr3_4:76134882-76134901 None:intergenic 50.0%
!! GCTGCTGGTAACGGCATTGT+TGG + chr3_4:76131846-76131865 None:intergenic 55.0%
TGGAGGGAGGGAAAATTGCG+CGG + chr3_4:76131907-76131926 None:intergenic 55.0%
GATGCCAATGTCAATGGCGG+AGG + chr3_4:76132015-76132034 None:intergenic 55.0%
!! CTTTCACGAGAGGCATCGAC+AGG + chr3_4:76132179-76132198 None:intergenic 55.0%
AGAGCGAAGGCTTTCACGAG+AGG + chr3_4:76132189-76132208 None:intergenic 55.0%
CACCAGTTTCCGCTGGGAAA+AGG + chr3_4:76132313-76132332 None:intergenic 55.0%
!! ATCCTCTGGGACACAATCCC+TGG + chr3_4:76132390-76132409 None:intergenic 55.0%
GGGATTGTGTCCCAGAGGAT+AGG - chr3_4:76132390-76132409 Msa0522820:intron 55.0%
! CCTCAACTCCGGTGTTAGCT+TGG + chr3_4:76132433-76132452 None:intergenic 55.0%
CCAAGCTAACACCGGAGTTG+AGG - chr3_4:76132430-76132449 Msa0522820:intron 55.0%
GTCCCCACTCAATTCAGGGT+AGG + chr3_4:76132762-76132781 None:intergenic 55.0%
CTTCCTCCTTCTACTGGAGC+AGG + chr3_4:76133615-76133634 None:intergenic 55.0%
CACTTGGCCACTTGTCGTAG+AGG + chr3_4:76134349-76134368 None:intergenic 55.0%
ATTCGCCTCTATCAGTGGGC+TGG - chr3_4:76134874-76134893 Msa0522820:intron 55.0%
GAGGGAAAATTGCGCGGTGG+CGG + chr3_4:76131901-76131920 None:intergenic 60.0%
AGGGAGGGAAAATTGCGCGG+TGG + chr3_4:76131904-76131923 None:intergenic 60.0%
! CCAATGTCAATGGCGGAGGC+AGG + chr3_4:76132011-76132030 None:intergenic 60.0%
CCTGCCTCCGCCATTGACAT+TGG - chr3_4:76132008-76132027 Msa0522820:intron 60.0%
TGCCAGGGATTGTGTCCCAG+AGG - chr3_4:76132385-76132404 Msa0522820:intron 60.0%
CACTTGGCCACTTGTCGCAG+AGG + chr3_4:76133748-76133767 None:intergenic 60.0%
GGGAGAGCCTCTACGACAAG+TGG - chr3_4:76134339-76134358 Msa0522820:intron 60.0%
! GGAAAATTGCGCGGTGGCGG+TGG + chr3_4:76131898-76131917 None:intergenic 65.0%
GGGAGGGCCTCTGCGACAAG+TGG - chr3_4:76133738-76133757 Msa0522820:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 76131737 76135437 76131737 ID=Msa0522820;Name=Msa0522820
chr3_4 mRNA 76131737 76135437 76131737 ID=Msa0522820-mRNA-1;Parent=Msa0522820;Name=Msa0522820-mRNA-1;_AED=0.37;_eAED=0.37;_QI=112|1|1|1|0.83|0.71|7|127|223
chr3_4 exon 76131737 76131861 76131737 ID=Msa0522820-mRNA-1:exon:21965;Parent=Msa0522820-mRNA-1
chr3_4 exon 76131914 76132000 76131914 ID=Msa0522820-mRNA-1:exon:21964;Parent=Msa0522820-mRNA-1
chr3_4 exon 76132244 76132303 76132244 ID=Msa0522820-mRNA-1:exon:21963;Parent=Msa0522820-mRNA-1
chr3_4 exon 76134120 76134220 76134120 ID=Msa0522820-mRNA-1:exon:21962;Parent=Msa0522820-mRNA-1
chr3_4 exon 76134723 76134853 76134723 ID=Msa0522820-mRNA-1:exon:21961;Parent=Msa0522820-mRNA-1
chr3_4 exon 76134950 76135057 76134950 ID=Msa0522820-mRNA-1:exon:21960;Parent=Msa0522820-mRNA-1
chr3_4 exon 76135139 76135437 76135139 ID=Msa0522820-mRNA-1:exon:21959;Parent=Msa0522820-mRNA-1
chr3_4 five_prime_UTR 76135326 76135437 76135326 ID=Msa0522820-mRNA-1:five_prime_utr;Parent=Msa0522820-mRNA-1
chr3_4 CDS 76135139 76135325 76135139 ID=Msa0522820-mRNA-1:cds;Parent=Msa0522820-mRNA-1
chr3_4 CDS 76134950 76135057 76134950 ID=Msa0522820-mRNA-1:cds;Parent=Msa0522820-mRNA-1
chr3_4 CDS 76134723 76134853 76134723 ID=Msa0522820-mRNA-1:cds;Parent=Msa0522820-mRNA-1
chr3_4 CDS 76134120 76134220 76134120 ID=Msa0522820-mRNA-1:cds;Parent=Msa0522820-mRNA-1
chr3_4 CDS 76132244 76132303 76132244 ID=Msa0522820-mRNA-1:cds;Parent=Msa0522820-mRNA-1
chr3_4 CDS 76131916 76132000 76131916 ID=Msa0522820-mRNA-1:cds;Parent=Msa0522820-mRNA-1
chr3_4 three_prime_UTR 76131914 76131915 76131914 ID=Msa0522820-mRNA-1:three_prime_utr;Parent=Msa0522820-mRNA-1
chr3_4 three_prime_UTR 76131737 76131861 76131737 ID=Msa0522820-mRNA-1:three_prime_utr;Parent=Msa0522820-mRNA-1
Gene Sequence

>Msa0522820

ATGCCGTTACCAGCAGCTACAGTTTCTGCTCTCAACTCTTTCTCATCCACCGCCACCGCGCAATTTTCCCTCCCTCCAAAACGTAACCTTCCCCTTTCCTCTTCTCACATTTTCTCTCGCAGAGACATAGCGTTACTCTCATTCTTTTCACTCTCTGCACCTGCCTCCGCCATTGACATTGGCATCTCAGGACCAAAGGATTGGCTAAAAGAACAAAAGAAGAAATCTTCCAAGTTTCTACTTGCTCCTGTCGATGCCTCTCGTGAAAGCCTTCGCTCTGTTTATCTTTTTCTCACGGAAACTGGTGCTACTTATACAGATGAAGATTTGCAGAAATTTCAGCAGCTATTCAGATCTGCTGCCAGGGATTGTGTCCCAGAGGATAGGAATTCTTTCGTAGCTTTCCAAGCTAACACCGGAGTTGAGGTGTGCACATTTCGGTTGATTGTGAAGAATGCAGCCTCCTTGCTTGGAAAGAAGGATCCTGTGAAGTTAGAAGCCGAAGCTTTGCTAGATAATCTTATAAGATCATTCGCCTCTATCAGTGGGCTGGCAAATGAAACCAACATTGAACTTGCATCGGATAGGAGCAAAATAGCAGATGCTGTATCGGATACAATATTATCTCTCGACAAATTTGAGCAAGGAATTAGGGATTGCCTCGAAATCTGA

Protein sequence

>Msa0522820

MPLPAATVSALNSFSSTATAQFSLPPKRNLPLSSSHIFSRRDIALLSFFSLSAPASAIDIGISGPKDWLKEQKKKSSKFLLAPVDASRESLRSVYLFLTETGATYTDEDLQKFQQLFRSAARDCVPEDRNSFVAFQANTGVEVCTFRLIVKNAASLLGKKDPVKLEAEALLDNLIRSFASISGLANETNIELASDRSKIADAVSDTILSLDKFEQGIRDCLEI*