Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0932190 | XP_013447476.1 | 94.898 | 98 | 5 | 0 | 1 | 98 | 1 | 98 | 3.05e-52 | 169 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0932190 | sp|P82353|NLTP2_PRUAR | 67.647 | 68 | 22 | 0 | 31 | 98 | 1 | 68 | 1.53e-29 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0932190 | A0A072TVT5 | 94.898 | 98 | 5 | 0 | 1 | 98 | 1 | 98 | 1.46e-52 | 169 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015460 | Msa0932190 | 0.819560 | 1.089308e-52 | -8.615850e-47 |
| Msa0015480 | Msa0932190 | 0.812096 | 5.035012e-51 | -8.615850e-47 |
| Msa0051450 | Msa0932190 | 0.802036 | 6.788148e-49 | -8.615850e-47 |
| Msa0054260 | Msa0932190 | 0.828876 | 7.043632e-55 | -8.615850e-47 |
| Msa0054310 | Msa0932190 | 0.817646 | 2.960822e-52 | -8.615850e-47 |
| Msa0057890 | Msa0932190 | 0.800973 | 1.121173e-48 | -8.615850e-47 |
| Msa0061500 | Msa0932190 | 0.802083 | 6.638223e-49 | -8.615850e-47 |
| Msa0078830 | Msa0932190 | 0.837198 | 5.986644e-57 | -8.615850e-47 |
| Msa0081650 | Msa0932190 | 0.808796 | 2.596818e-50 | -8.615850e-47 |
| Msa0092410 | Msa0932190 | 0.827623 | 1.412302e-54 | -8.615850e-47 |
| Msa0100080 | Msa0932190 | 0.812119 | 4.976240e-51 | -8.615850e-47 |
| Msa0100090 | Msa0932190 | 0.842431 | 2.596465e-58 | -8.615850e-47 |
| Msa0101830 | Msa0932190 | 0.802112 | 6.547412e-49 | -8.615850e-47 |
| Msa0109590 | Msa0932190 | 0.838127 | 3.457884e-57 | -8.615850e-47 |
| Msa0610130 | Msa0932190 | 0.800818 | 1.205772e-48 | -8.615850e-47 |
| Msa0614920 | Msa0932190 | 0.835395 | 1.720250e-56 | -8.615850e-47 |
| Msa0620620 | Msa0932190 | 0.839414 | 1.607103e-57 | -8.615850e-47 |
| Msa0648860 | Msa0932190 | 0.813870 | 2.056385e-51 | -8.615850e-47 |
| Msa0664970 | Msa0932190 | 0.803969 | 2.705055e-49 | -8.615850e-47 |
| Msa0689780 | Msa0932190 | 0.807178 | 5.737088e-50 | -8.615850e-47 |
| Msa0711150 | Msa0932190 | 0.855378 | 6.568484e-62 | -8.615850e-47 |
| Msa0715410 | Msa0932190 | 0.823652 | 1.234423e-53 | -8.615850e-47 |
| Msa0742150 | Msa0932190 | 0.847349 | 1.223145e-59 | -8.615850e-47 |
| Msa0750850 | Msa0932190 | 0.805861 | 1.088188e-49 | -8.615850e-47 |
| Msa0752070 | Msa0932190 | 0.804916 | 1.717111e-49 | -8.615850e-47 |
| Msa0786070 | Msa0932190 | 0.819312 | 1.240791e-52 | -8.615850e-47 |
| Msa0823440 | Msa0932190 | 0.815984 | 6.984612e-52 | -8.615850e-47 |
| Msa0825870 | Msa0932190 | 0.821601 | 3.702779e-53 | -8.615850e-47 |
| Msa0826760 | Msa0932190 | 0.840114 | 1.056773e-57 | -8.615850e-47 |
| Msa0830230 | Msa0932190 | 0.861041 | 1.355459e-63 | -8.615850e-47 |
| Msa0135410 | Msa0932190 | 0.814703 | 1.346284e-51 | -8.615850e-47 |
| Msa0138020 | Msa0932190 | 0.829534 | 4.877831e-55 | -8.615850e-47 |
| Msa0140100 | Msa0932190 | 0.827234 | 1.751139e-54 | -8.615850e-47 |
| Msa0152560 | Msa0932190 | 0.822498 | 2.293899e-53 | -8.615850e-47 |
| Msa0155880 | Msa0932190 | 0.800118 | 1.674363e-48 | -8.615850e-47 |
| Msa0197660 | Msa0932190 | 0.837719 | 4.402436e-57 | -8.615850e-47 |
| Msa0200850 | Msa0932190 | 0.848486 | 5.943151e-60 | -8.615850e-47 |
| Msa0201530 | Msa0932190 | 0.812160 | 4.875205e-51 | -8.615850e-47 |
| Msa0215590 | Msa0932190 | 0.847055 | 1.473258e-59 | -8.615850e-47 |
| Msa0217700 | Msa0932190 | 0.839230 | 1.794305e-57 | -8.615850e-47 |
| Msa0225470 | Msa0932190 | 0.817273 | 3.591453e-52 | -8.615850e-47 |
| Msa0231060 | Msa0932190 | 0.808470 | 3.048512e-50 | -8.615850e-47 |
| Msa0233370 | Msa0932190 | 0.821269 | 4.416620e-53 | -8.615850e-47 |
| Msa0236070 | Msa0932190 | 0.802981 | 4.335131e-49 | -8.615850e-47 |
| Msa0369920 | Msa0932190 | 0.817662 | 2.935626e-52 | -8.615850e-47 |
| Msa0371950 | Msa0932190 | 0.811188 | 7.933165e-51 | -8.615850e-47 |
| Msa0385490 | Msa0932190 | 0.806994 | 6.276997e-50 | -8.615850e-47 |
| Msa0394470 | Msa0932190 | 0.806481 | 8.054449e-50 | -8.615850e-47 |
| Msa0410580 | Msa0932190 | 0.818503 | 1.895001e-52 | -8.615850e-47 |
| Msa0415420 | Msa0932190 | 0.827033 | 1.955947e-54 | -8.615850e-47 |
| Msa0417330 | Msa0932190 | 0.849277 | 3.585798e-60 | -8.615850e-47 |
| Msa0239800 | Msa0932190 | 0.843191 | 1.630633e-58 | -8.615850e-47 |
| Msa0243480 | Msa0932190 | 0.865224 | 6.895899e-65 | -8.615850e-47 |
| Msa0244140 | Msa0932190 | 0.820118 | 8.120685e-53 | -8.615850e-47 |
| Msa0244190 | Msa0932190 | 0.819627 | 1.051779e-52 | -8.615850e-47 |
| Msa0255850 | Msa0932190 | 0.816335 | 5.830377e-52 | -8.615850e-47 |
| Msa0257500 | Msa0932190 | 0.820732 | 5.872791e-53 | -8.615850e-47 |
| Msa0269560 | Msa0932190 | 0.816824 | 4.532360e-52 | -8.615850e-47 |
| Msa0277820 | Msa0932190 | 0.820792 | 5.686640e-53 | -8.615850e-47 |
| Msa0278580 | Msa0932190 | 0.802832 | 4.653307e-49 | -8.615850e-47 |
| Msa0281930 | Msa0932190 | 0.830448 | 2.919607e-55 | -8.615850e-47 |
| Msa0296820 | Msa0932190 | 0.801292 | 9.643409e-49 | -8.615850e-47 |
| Msa0299660 | Msa0932190 | 0.803195 | 3.914869e-49 | -8.615850e-47 |
| Msa0317510 | Msa0932190 | 0.835454 | 1.662663e-56 | -8.615850e-47 |
| Msa0319290 | Msa0932190 | 0.811347 | 7.326068e-51 | -8.615850e-47 |
| Msa0320430 | Msa0932190 | 0.828658 | 7.955901e-55 | -8.615850e-47 |
| Msa0321080 | Msa0932190 | 0.859364 | 4.352038e-63 | -8.615850e-47 |
| Msa0333650 | Msa0932190 | 0.850960 | 1.210773e-60 | -8.615850e-47 |
| Msa0340690 | Msa0932190 | 0.811857 | 5.676196e-51 | -8.615850e-47 |
| Msa0340710 | Msa0932190 | 0.808834 | 2.548733e-50 | -8.615850e-47 |
| Msa0347750 | Msa0932190 | 0.811032 | 8.573676e-51 | -8.615850e-47 |
| Msa0357790 | Msa0932190 | 0.807555 | 4.774852e-50 | -8.615850e-47 |
| Msa0357830 | Msa0932190 | 0.818110 | 2.325891e-52 | -8.615850e-47 |
| Msa0357840 | Msa0932190 | 0.814479 | 1.508938e-51 | -8.615850e-47 |
| Msa0485490 | Msa0932190 | 0.807834 | 4.165311e-50 | -8.615850e-47 |
| Msa0541040 | Msa0932190 | 0.834768 | 2.476549e-56 | -8.615850e-47 |
| Msa0597000 | Msa0932190 | 0.821832 | 3.273450e-53 | -8.615850e-47 |
| Msa0861470 | Msa0932190 | 0.805852 | 1.092860e-49 | -8.615850e-47 |
| Msa0861570 | Msa0932190 | 0.807208 | 5.655932e-50 | -8.615850e-47 |
| Msa0862280 | Msa0932190 | 0.818028 | 2.427003e-52 | -8.615850e-47 |
| Msa0865330 | Msa0932190 | 0.812059 | 5.127833e-51 | -8.615850e-47 |
| Msa0876360 | Msa0932190 | 0.812100 | 5.024356e-51 | -8.615850e-47 |
| Msa0880810 | Msa0932190 | 0.816701 | 4.829396e-52 | -8.615850e-47 |
| Msa0888260 | Msa0932190 | 0.809747 | 1.623914e-50 | -8.615850e-47 |
| Msa0932100 | Msa0932190 | 0.981969 | 6.699844e-154 | -8.615850e-47 |
| Msa0932190 | Msa0935770 | 0.814585 | 1.429511e-51 | -8.615850e-47 |
| Msa0932190 | Msa0970230 | 0.980956 | 1.977549e-151 | -8.615850e-47 |
| Msa0932190 | Msa0972810 | 0.835969 | 1.230871e-56 | -8.615850e-47 |
| Msa0932190 | Msa0978700 | 0.807142 | 5.839857e-50 | -8.615850e-47 |
| Msa0932190 | Msa1001080 | 0.800780 | 1.227248e-48 | -8.615850e-47 |
| Msa0932190 | Msa1023300 | 0.821063 | 4.926839e-53 | -8.615850e-47 |
| Msa0932190 | Msa1025080 | 0.800120 | 1.672760e-48 | -8.615850e-47 |
| Msa0932190 | Msa1062030 | 0.803853 | 2.858678e-49 | -8.615850e-47 |
| Msa0932190 | Msa1071320 | 0.808538 | 2.948253e-50 | -8.615850e-47 |
| Msa0932190 | Msa1077340 | 0.804430 | 2.168136e-49 | -8.615850e-47 |
| Msa0932190 | Msa1087990 | 0.803195 | 3.913691e-49 | -8.615850e-47 |
| Msa0932190 | Msa1096070 | 0.804768 | 1.843460e-49 | -8.615850e-47 |
| Msa0932190 | Msa1107190 | 0.815476 | 9.065877e-52 | -8.615850e-47 |
| Msa0932190 | Msa1109090 | 0.811967 | 5.371525e-51 | -8.615850e-47 |
| Msa0932190 | Msa1115280 | 0.812298 | 4.548961e-51 | -8.615850e-47 |
| Msa0932190 | Msa1127190 | 0.805070 | 1.593868e-49 | -8.615850e-47 |
| Msa0932190 | Msa1150790 | 0.847884 | 8.715273e-60 | -8.615850e-47 |
| Msa0932190 | Msa1150800 | 0.819270 | 1.268562e-52 | -8.615850e-47 |
| Msa0932190 | Msa1150810 | 0.848563 | 5.660469e-60 | -8.615850e-47 |
| Msa0932190 | Msa1200250 | 0.823454 | 1.372874e-53 | -8.615850e-47 |
| Msa0932190 | Msa1206360 | 0.813156 | 2.952177e-51 | -8.615850e-47 |
| Msa0932190 | Msa1218580 | 0.816900 | 4.355753e-52 | -8.615850e-47 |
| Msa0932190 | Msa1224200 | 0.803270 | 3.776981e-49 | -8.615850e-47 |
| Msa0932190 | Msa1236420 | 0.801148 | 1.032127e-48 | -8.615850e-47 |
| Msa0932190 | Msa1246700 | 0.842653 | 2.267324e-58 | -8.615850e-47 |
| Msa0932190 | Msa1276340 | 0.824307 | 8.666398e-54 | -8.615850e-47 |
| Msa0932190 | Msa1279480 | 0.824221 | 9.079713e-54 | -8.615850e-47 |
| Msa0932190 | Msa1316360 | 0.801434 | 9.020321e-49 | -8.615850e-47 |
| Msa0932190 | Msa1329870 | 0.800179 | 1.627553e-48 | -8.615850e-47 |
| Msa0932190 | Msa1338400 | 0.811278 | 7.585208e-51 | -8.615850e-47 |
| Msa0932190 | Msa1355890 | 0.859345 | 4.410040e-63 | -8.615850e-47 |
| Msa0932190 | Msa1365270 | 0.830529 | 2.790363e-55 | -8.615850e-47 |
| Msa0932190 | Msa1376450 | 0.835340 | 1.776293e-56 | -8.615850e-47 |
| Msa0932190 | Msa1380220 | 0.828124 | 1.070392e-54 | -8.615850e-47 |
| Msa0932190 | Msa1381960 | 0.800452 | 1.431701e-48 | -8.615850e-47 |
| Msa0932190 | Msa1382790 | 0.805961 | 1.036809e-49 | -8.615850e-47 |
| Msa0932190 | Msa1391550 | 0.828006 | 1.142627e-54 | -8.615850e-47 |
| Msa0932190 | Msa1394380 | 0.802595 | 5.206829e-49 | -8.615850e-47 |
| Msa0932190 | Msa1418280 | 0.846279 | 2.399363e-59 | -8.615850e-47 |
| Msa0932190 | Msa1420270 | 0.808618 | 2.835182e-50 | -8.615850e-47 |
| Msa0932190 | Msa1430550 | 0.814433 | 1.544414e-51 | -8.615850e-47 |
| Msa0932190 | Msa1436600 | 0.818893 | 1.545460e-52 | -8.615850e-47 |
| Msa0932190 | Msa1457160 | 0.806591 | 7.635496e-50 | -8.615850e-47 |
| Msa0932190 | Msa1458510 | 0.805729 | 1.159677e-49 | -8.615850e-47 |
| Msa0932190 | Msa1460800 | 0.835264 | 1.857127e-56 | -8.615850e-47 |
| Msa0932190 | Msa1462360 | 0.819649 | 1.039555e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0932190 | MtrunA17_Chr6g0470291 | 94.898 | 98 | 5 | 0 | 1 | 98 | 1 | 98 | 2.80e-56 | 169 |
| Msa0932190 | MtrunA17_Chr7g0251191 | 53.933 | 89 | 41 | 0 | 10 | 98 | 6 | 94 | 2.36e-35 | 115 |
| Msa0932190 | MtrunA17_Chr6g0483691 | 49.383 | 81 | 41 | 0 | 18 | 98 | 12 | 92 | 3.92e-29 | 100 |
| Msa0932190 | MtrunA17_Chr1g0209271 | 42.222 | 90 | 52 | 0 | 9 | 98 | 3 | 92 | 1.21e-26 | 94.0 |
| Msa0932190 | MtrunA17_Chr7g0251171 | 42.045 | 88 | 51 | 0 | 10 | 97 | 6 | 93 | 1.43e-22 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0932190 | AT3G18280.2 | 49.438 | 89 | 42 | 1 | 10 | 98 | 35 | 120 | 2.45e-30 | 104 |
| Msa0932190 | AT3G18280.1 | 49.438 | 89 | 42 | 1 | 10 | 98 | 11 | 96 | 4.20e-30 | 103 |
| Msa0932190 | AT1G48750.1 | 55.556 | 72 | 32 | 0 | 27 | 98 | 23 | 94 | 1.47e-28 | 99.4 |
| Msa0932190 | AT1G73780.1 | 34.694 | 98 | 64 | 0 | 1 | 98 | 1 | 98 | 2.78e-22 | 83.6 |
| Msa0932190 | AT1G66850.1 | 50.725 | 69 | 34 | 0 | 30 | 98 | 34 | 102 | 2.02e-21 | 81.3 |
| Msa0932190 | AT1G43666.1 | 46.154 | 91 | 43 | 3 | 8 | 98 | 11 | 95 | 3.82e-20 | 77.8 |
| Msa0932190 | AT5G38170.1 | 45.588 | 68 | 37 | 0 | 31 | 98 | 36 | 103 | 4.62e-19 | 75.5 |
| Msa0932190 | AT5G38195.1 | 47.761 | 67 | 35 | 0 | 32 | 98 | 29 | 95 | 9.17e-19 | 74.3 |
| Msa0932190 | AT1G43667.1 | 35.000 | 100 | 61 | 2 | 1 | 98 | 1 | 98 | 1.87e-18 | 73.6 |
| Msa0932190 | AT5G38160.1 | 40.260 | 77 | 42 | 1 | 22 | 98 | 31 | 103 | 9.75e-18 | 72.0 |
| Msa0932190 | AT5G38180.1 | 36.000 | 100 | 57 | 2 | 1 | 98 | 1 | 95 | 1.09e-17 | 71.6 |
| Msa0932190 | AT2G14846.1 | 45.161 | 62 | 34 | 0 | 37 | 98 | 38 | 99 | 1.31e-14 | 63.9 |
| Msa0932190 | AT1G43665.1 | 36.250 | 80 | 45 | 2 | 17 | 96 | 22 | 95 | 2.29e-14 | 63.9 |
| Msa0932190 | AT1G07747.1 | 40.909 | 66 | 37 | 1 | 33 | 98 | 29 | 92 | 2.30e-13 | 60.8 |
| Msa0932190 | AT5G38197.1 | 34.694 | 98 | 62 | 2 | 1 | 98 | 1 | 96 | 4.62e-13 | 60.1 |
| Msa0932190 | AT3G57310.1 | 36.364 | 66 | 42 | 0 | 33 | 98 | 38 | 103 | 1.05e-12 | 59.3 |
| Msa0932190 | AT4G12825.1 | 34.066 | 91 | 50 | 2 | 16 | 98 | 7 | 95 | 1.67e-12 | 58.5 |
Find 28 sgRNAs with CRISPR-Local
Find 30 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAGAGTTCAGTCCTTGTTT+AGG | 0.334416 | 6_3:+172125 | Msa0932190:CDS |
| GTCTCTGCTCTCTTAACTTC+TGG | 0.337118 | 6_3:-172187 | None:intergenic |
| TTTACTCTCCTGGTGCTAGA+AGG | 0.339135 | 6_3:+172255 | Msa0932190:CDS |
| GAGCAGAGACCATGCCTTTG+TGG | 0.411218 | 6_3:+172200 | Msa0932190:CDS |
| GAAGGGTTACTAGCTCTTGT+GGG | 0.413579 | 6_3:+172273 | Msa0932190:CDS |
| TTCTGGCAACAAGCACTTGT+TGG | 0.433827 | 6_3:-172170 | None:intergenic |
| ATGATTGATGGCTAACAAGT+TGG | 0.442427 | 6_3:-172305 | None:intergenic |
| TAAATATACTGCTTGAGGCT+TGG | 0.456606 | 6_3:-172236 | None:intergenic |
| AAACAAGGACTGAACTCTAC+AGG | 0.466330 | 6_3:-172122 | None:intergenic |
| TGGCAACAAGCACTTGTTGG+TGG | 0.497936 | 6_3:-172167 | None:intergenic |
| AGAAGGGTTACTAGCTCTTG+TGG | 0.498825 | 6_3:+172272 | Msa0932190:CDS |
| TGATTGATGGCTAACAAGTT+GGG | 0.507677 | 6_3:-172304 | None:intergenic |
| TGTTTATGCAGTAGTGGTTG+TGG | 0.508459 | 6_3:+172046 | Msa0932190:CDS |
| AAGCAGTATATTTACTCTCC+TGG | 0.517554 | 6_3:+172245 | Msa0932190:CDS |
| TGGTATTGTTTATGCAGTAG+TGG | 0.524181 | 6_3:+172040 | Msa0932190:CDS |
| CTAGTAACCCTTCTAGCACC+AGG | 0.531212 | 6_3:-172263 | None:intergenic |
| TTACTCTCCTGGTGCTAGAA+GGG | 0.532631 | 6_3:+172256 | Msa0932190:CDS |
| GCTTGAGGCTTGGATTCTTG+AGG | 0.548134 | 6_3:-172226 | None:intergenic |
| ATGAAGAAACACTCTAGCTA+TGG | 0.561126 | 6_3:+172020 | Msa0932190:CDS |
| TGATGGCTAACAAGTTGGGA+AGG | 0.576643 | 6_3:-172300 | None:intergenic |
| GAGAGTAAATATACTGCTTG+AGG | 0.582416 | 6_3:-172241 | None:intergenic |
| AAGGGTTACTAGCTCTTGTG+GGG | 0.597115 | 6_3:+172274 | Msa0932190:CDS |
| GGAGGAGACTTACATGGCAA+AGG | 0.624840 | 6_3:+172085 | Msa0932190:CDS |
| AACAAGGACTGAACTCTACA+GGG | 0.629235 | 6_3:-172121 | None:intergenic |
| GATGGCTAACAAGTTGGGAA+GGG | 0.649759 | 6_3:-172299 | None:intergenic |
| TTGAGGTAACCACAAAGGCA+TGG | 0.650224 | 6_3:-172209 | None:intergenic |
| GATTCTTGAGGTAACCACAA+AGG | 0.669776 | 6_3:-172214 | None:intergenic |
| GTTGTGATTGATCCTAAACA+AGG | 0.684294 | 6_3:-172137 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ATGAAGAAACACTCTAGCTA+TGG | + | chr6_3:172020-172039 | Msa0932190:CDS | 35.0% | |
| TGGTATTGTTTATGCAGTAG+TGG | + | chr6_3:172040-172059 | Msa0932190:CDS | 35.0% | |
| ! | GTTGTGGCAATAGTGTTTTT+GGG | + | chr6_3:172062-172081 | Msa0932190:CDS | 35.0% |
| !! | TTGTGGCAATAGTGTTTTTG+GGG | + | chr6_3:172063-172082 | Msa0932190:CDS | 35.0% |
| GTTGTGATTGATCCTAAACA+AGG | - | chr6_3:172140-172159 | None:intergenic | 35.0% | |
| TAAATATACTGCTTGAGGCT+TGG | - | chr6_3:172239-172258 | None:intergenic | 35.0% | |
| GAGAGTAAATATACTGCTTG+AGG | - | chr6_3:172244-172263 | None:intergenic | 35.0% | |
| AAGCAGTATATTTACTCTCC+TGG | + | chr6_3:172245-172264 | Msa0932190:CDS | 35.0% | |
| TGTTTATGCAGTAGTGGTTG+TGG | + | chr6_3:172046-172065 | Msa0932190:CDS | 40.0% | |
| ! | GGTTGTGGCAATAGTGTTTT+TGG | + | chr6_3:172061-172080 | Msa0932190:CDS | 40.0% |
| !!! | TGTGGCAATAGTGTTTTTGG+GGG | + | chr6_3:172064-172083 | Msa0932190:CDS | 40.0% |
| AACAAGGACTGAACTCTACA+GGG | - | chr6_3:172124-172143 | None:intergenic | 40.0% | |
| AAACAAGGACTGAACTCTAC+AGG | - | chr6_3:172125-172144 | None:intergenic | 40.0% | |
| ! | GTAGAGTTCAGTCCTTGTTT+AGG | + | chr6_3:172125-172144 | Msa0932190:CDS | 40.0% |
| GATTCTTGAGGTAACCACAA+AGG | - | chr6_3:172217-172236 | None:intergenic | 40.0% | |
| TTCTGGCAACAAGCACTTGT+TGG | - | chr6_3:172173-172192 | None:intergenic | 45.0% | |
| GTCTCTGCTCTCTTAACTTC+TGG | - | chr6_3:172190-172209 | None:intergenic | 45.0% | |
| TTGAGGTAACCACAAAGGCA+TGG | - | chr6_3:172212-172231 | None:intergenic | 45.0% | |
| ! | TTTACTCTCCTGGTGCTAGA+AGG | + | chr6_3:172255-172274 | Msa0932190:CDS | 45.0% |
| ! | TTACTCTCCTGGTGCTAGAA+GGG | + | chr6_3:172256-172275 | Msa0932190:CDS | 45.0% |
| ! | AGAAGGGTTACTAGCTCTTG+TGG | + | chr6_3:172272-172291 | Msa0932190:CDS | 45.0% |
| ! | GAAGGGTTACTAGCTCTTGT+GGG | + | chr6_3:172273-172292 | Msa0932190:CDS | 45.0% |
| ! | AAGGGTTACTAGCTCTTGTG+GGG | + | chr6_3:172274-172293 | Msa0932190:CDS | 45.0% |
| !!! | GGCAATAGTGTTTTTGGGGG+AGG | + | chr6_3:172067-172086 | Msa0932190:CDS | 50.0% |
| TTTGGGGGAGGAGACTTACA+TGG | + | chr6_3:172079-172098 | Msa0932190:CDS | 50.0% | |
| GGAGGAGACTTACATGGCAA+AGG | + | chr6_3:172085-172104 | Msa0932190:CDS | 50.0% | |
| ! | TGGCAACAAGCACTTGTTGG+TGG | - | chr6_3:172170-172189 | None:intergenic | 50.0% |
| GCTTGAGGCTTGGATTCTTG+AGG | - | chr6_3:172229-172248 | None:intergenic | 50.0% | |
| CTAGTAACCCTTCTAGCACC+AGG | - | chr6_3:172266-172285 | None:intergenic | 50.0% | |
| GAGCAGAGACCATGCCTTTG+TGG | + | chr6_3:172200-172219 | Msa0932190:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 172020 | 172316 | 172020 | ID=Msa0932190;Name=Msa0932190 |
| chr6_3 | mRNA | 172020 | 172316 | 172020 | ID=Msa0932190-mRNA-1;Parent=Msa0932190;Name=Msa0932190-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|-1|0|1|-1|1|1|0|98 |
| chr6_3 | exon | 172020 | 172316 | 172020 | ID=Msa0932190-mRNA-1:exon:72;Parent=Msa0932190-mRNA-1 |
| chr6_3 | CDS | 172020 | 172316 | 172020 | ID=Msa0932190-mRNA-1:cds;Parent=Msa0932190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
