AlfalfaGEDB | Msa0202010

M. sativa cultivar zhongmu-4 / Msa0202010

KEGG: K17964
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363
PFAM: PF12854.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202010	XP_003595043.1	95.701	1070	46	0	35	1104	1	1070	0.0	2119

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202010	sp\|Q9LVD3\|PP434_ARATH	40.056	1076	524	10	36	1099	3	969	0.0	768

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202010	G7INK2	95.701	1070	46	0	35	1104	1	1070	0.0	2119

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa0202010	0.836116	1.129607e-56	-8.615850e-47
Msa0031340	Msa0202010	0.823340	1.459778e-53	-8.615850e-47
Msa0061340	Msa0202010	0.800684	1.284252e-48	-8.615850e-47
Msa0068680	Msa0202010	0.827999	1.146888e-54	-8.615850e-47
Msa0095560	Msa0202010	0.806206	9.203915e-50	-8.615850e-47
Msa0101810	Msa0202010	-0.801092	1.060006e-48	-8.615850e-47
Msa0102200	Msa0202010	0.807343	5.295848e-50	-8.615850e-47
Msa0110970	Msa0202010	0.803709	3.063295e-49	-8.615850e-47
Msa0114060	Msa0202010	0.807974	3.889735e-50	-8.615850e-47
Msa0140780	Msa0202010	0.807924	3.986029e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202010	MtrunA17_Chr2g0298541	95.701	1070	46	0	35	1104	1	1070	0.0	2119
Msa0202010	MtrunA17_Chr3g0136851	26.399	822	545	16	164	950	307	1103	8.27e-66	242
Msa0202010	MtrunA17_Chr3g0136851	24.641	767	494	10	230	949	303	1032	3.34e-63	234
Msa0202010	MtrunA17_Chr3g0136851	24.715	878	569	17	231	1027	165	1031	1.06e-50	195
Msa0202010	MtrunA17_Chr3g0136851	23.061	490	351	8	59	530	618	1099	3.24e-28	123
Msa0202010	MtrunA17_Chr3g0136851	24.262	305	224	2	216	513	813	1117	2.51e-24	110
Msa0202010	MtrunA17_Chr3g0136851	22.110	493	357	12	475	952	134	614	1.73e-22	104
Msa0202010	MtrunA17_Chr3g0136851	25.100	251	182	3	168	415	872	1119	3.65e-19	94.0
Msa0202010	MtrunA17_Chr3g0136851	21.374	262	177	6	773	1008	156	414	4.83e-12	70.5
Msa0202010	MtrunA17_Chr4g0047591	24.623	861	568	14	198	1024	129	942	9.86e-63	232

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202010	AT5G57250.1	40.056	1076	524	10	36	1099	3	969	0.0	768
Msa0202010	AT4G31850.1	24.687	798	538	12	230	994	291	1058	1.36e-66	245
Msa0202010	AT4G31850.1	22.687	670	468	12	293	950	73	704	2.95e-30	130
Msa0202010	AT4G31850.1	27.431	288	202	3	230	510	818	1105	1.74e-27	121
Msa0202010	AT4G31850.1	22.996	474	345	10	198	655	642	1111	6.28e-26	116
Msa0202010	AT4G31850.1	22.115	728	456	24	160	859	464	1108	4.91e-25	113
Msa0202010	AT4G31850.1	22.379	496	351	13	475	951	121	601	9.42e-19	92.8
Msa0202010	AT4G31850.1	22.523	222	166	1	773	988	143	364	2.12e-14	79.0
Msa0202010	AT1G19290.2	27.214	779	515	18	110	849	91	856	5.01e-61	226
Msa0202010	AT1G19290.2	21.517	567	316	12	128	573	299	857	7.39e-25	112

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Find 286 sgRNAs with CRISPR-Local

Find 455 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACAGATGAAATCTGC+AGG	0.567344	2_1:-23983095	Msa0202010:intron
AAACTCACGAAATCTTCACA+TGG	0.610904	2_1:-23986197	Msa0202010:CDS
AAAGCATTAATATTTCGTGG+AGG	0.677644	2_1:-23982802	Msa0202010:three_prime_UTR
AAAGGTCTCATGTTGGATAC+AGG	0.487450	2_1:-23984773	Msa0202010:CDS
AAATCAAATCAGATGCTGCT+AGG	0.560897	2_1:+23986466	None:intergenic
AAATCAGATGCTGCTAGGTA+GGG	0.515268	2_1:+23986471	None:intergenic
AACCACAGTAATTGCGAATG+TGG	0.575121	2_1:+23982737	None:intergenic
AACTCACGAAATCTTCACAT+GGG	0.662530	2_1:-23986196	Msa0202010:CDS
AAGAAGCGTTTGGAAGAAGC+TGG	0.566500	2_1:-23985103	Msa0202010:CDS
AAGAAGGTGGTGATTGAATT+TGG	0.259767	2_1:+23986306	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGTTGTTGAATTGATGAAT+GGG	-	chr2_1:23981075-23981094	Msa0202010:intron	30.0%
ATTGATGAATGGGTATAGAA+AGG	-	chr2_1:23981085-23981104	Msa0202010:intron	30.0%
AAAAACCACAATGAAAGTTC+TGG	+	chr2_1:23981173-23981192	None:intergenic	30.0%
ATGTTGTGTTGTATAGTGTT+TGG	-	chr2_1:23981324-23981343	Msa0202010:intron	30.0%
TGTTGTGTTGTATAGTGTTT+GGG	-	chr2_1:23981325-23981344	Msa0202010:intron	30.0%
AGAAGGGATTATACCTAATA+AGG	-	chr2_1:23981517-23981536	Msa0202010:intron	30.0%
GCAGTATAAGTAACCTTATT+AGG	+	chr2_1:23981533-23981552	None:intergenic	30.0%
TATGTCTGCATATTGTAAGA+AGG	-	chr2_1:23981556-23981575	Msa0202010:intron	30.0%
ATGTCTGCATATTGTAAGAA+GGG	-	chr2_1:23981557-23981576	Msa0202010:intron	30.0%
TTTCAAAAGGATGAAGGATA+TGG	-	chr2_1:23981604-23981623	Msa0202010:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	23980528	23986502	23980528	ID=Msa0202010;Name=Msa0202010
chr2_1	mRNA	23980528	23986502	23980528	ID=Msa0202010-mRNA-1;Parent=Msa0202010;Name=Msa0202010-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|0.66\|0.75\|1\|0\|0.25\|4\|893\|1104
chr2_1	exon	23980528	23980970	23980528	ID=Msa0202010-mRNA-1:exon:9235;Parent=Msa0202010-mRNA-1
chr2_1	exon	23982384	23982615	23982384	ID=Msa0202010-mRNA-1:exon:9234;Parent=Msa0202010-mRNA-1
chr2_1	exon	23982703	23982828	23982703	ID=Msa0202010-mRNA-1:exon:9233;Parent=Msa0202010-mRNA-1
chr2_1	exon	23983096	23986502	23983096	ID=Msa0202010-mRNA-1:exon:9232;Parent=Msa0202010-mRNA-1
chr2_1	CDS	23983188	23986502	23983188	ID=Msa0202010-mRNA-1:cds;Parent=Msa0202010-mRNA-1
chr2_1	three_prime_UTR	23983096	23983187	23983096	ID=Msa0202010-mRNA-1:three_prime_utr;Parent=Msa0202010-mRNA-1
chr2_1	three_prime_UTR	23982703	23982828	23982703	ID=Msa0202010-mRNA-1:three_prime_utr;Parent=Msa0202010-mRNA-1
chr2_1	three_prime_UTR	23982384	23982615	23982384	ID=Msa0202010-mRNA-1:three_prime_utr;Parent=Msa0202010-mRNA-1
chr2_1	three_prime_UTR	23980528	23980970	23980528	ID=Msa0202010-mRNA-1:three_prime_utr;Parent=Msa0202010-mRNA-1

Gene Sequence

>Msa0202010

ATATTCTTCCCCTACCTAGCAGCATCTGATTTGATTTCAGAACAACATTGTAATTGTGATGCAAAACATTTTCAAAACCAAACATTCTTCTTTCTTCATTCTATGTTGTTCTCCTCAACAAAACCCTTCACATTCTCACTCCAAACCTTACTCAAACATGGCCTCACTCCCACTCCAAATTCAATCACCACCTTCTTCAGTTTCCTCTTCAACCTCCGCAAATTCAACCTAATCATCAACCTCTTCCATCAATTCACCTTCAACAAAATCCAAATCCCACACAAAACTCACGAAATCTTCACATGGGCACTTCTCAATTCACACAATTTCAACCAAGCTGAACAATTTATGAAGGAAAATCCACACACCACATTTGGCGCGTGGGACGCGCTTATTCATGGTTTATGCTCCACGCGCGAAAACCCAGAAAGGATTCTCTCTGTTCTGCGACATTGCTTGGTAAAAAATCGTGTTTTTATCTCAAAAACTGTTTTTTGTTGCGTGATTCATAGATTTTGCAATGTGGGTCATGTGGGTAAGGCTATTGAGGTTGTTGAATTGATGAATGGGTATAGAAAGGATTACCTTTTTGATGATTTTGTTTCTAGTTCCGTGGTTTCGGCATTTTGTAGAGCTGGAAAACCAGAACTTTCATTGTGGTTTTTCGATAATTTCACGCGGTCGAGGCCGAATTTGGTGACTTATACTGCTGTTGTGAATGCTCTTTGTAAGTTGGGGAGGGTTGATGAAGTTTGTGATTTGGTGAGGAAGATGGAGGAGGATGGGTTGGATTTGGATGTTGTGTTGTATAGTGTTTGGGTTTGTGGGTATGTTGAAGAGAAGGTTTTGGTTGAGGTTTTTAGGAAGATGAGAGAAATGGTGGAAAAGGGTATATGTCATGATTTTGTTAGTTATACTATACTTATAGATGGGTTTTCTAAGTTAGGTGATGTTGAAAAGTCTTTTACTTTCTTAGCTAAGATGATTAAAGAAGGGATTATACCTAATAAGGTTACTTATACTGCAATTATGTCTGCATATTGTAAGAAGGGTAGGGTAGAGGAAGCATTTGGTGTTTTCAAAAGGATGAAGGATATGGGAATCGAGTTGGATGAATTTGTGTTTGTTGTTTTGATTGATGGGTTTGGAAGGGTAGGAGATTTTGATAGCGTGTTTCAGCTTCTTGTTGAAATGGAGAAGAGAGGGATTAGTCCCAGTGTTGTTACGTATAATGCGGTTGTAAATGGTTTGTCGAAGTATGGGAGGACACAGGAGGCGGATGAGTTCTCAAAAAACGTGACTGCAGATGTAGTTACGTACAGCACGTTGTTGCACGGGTATACCAAAGAAGATAATGTTTTGGGGATTTTGCAGACGAAGAAGCGTTTGGAAGAAGCTGGCATCTCTATGGATGTTGTAATGTGTAATGTGCTGATCAGGGCGCTGTTTATGATGCAGGCTTATGAAGATGTTTATGCACTTTACAAAGGAATGCCGGAAATGGATCTCGTTCCAAATTCTGTTACGTACTGCACAATGATTGATGGGTATTGCAAGGTTGGTAAAATCAATGAGGCACTTGAGGTATTTGATGACTTTAGAAAGACATCAATCTCTTCGTATGCATGCTACAATAGTATTATTAATGGCCTTTGCAAGAAGGGTATGGTAGAAATGGCCATTGAAGCATTGCTTGAACTCGATCACAAAGGTCTCATGTTGGATACAGGTACACATAGGCTGTTAATGAAGACAATTTTCAAAGAAAATAGTTCAAAAGTGGTCTTAGATTTAGTTTGCAGAATGCAAAGTTTAGAGCTAGATATATACAATGCAATGTGTAATGATTCCATATTTTTATTATGTAAACGAGGATTACTCGATGATGCATATCAATTGTGGATGGCGATGAAAAAGAAAGGGTTACCTGTCACATGCAAATCTTATCATTCACTTTTGAGAAGGCTTCTCTGTGTTGTTGGGAATAGGGAGCAAATTCTTCCCCTTTTGAATTGCTTTCTGAAAGAGTACGGTCTATTTGAACCAAAGGTTCAAAAGGTACTCGCACAATACCTTTGTCTGAAAGATGTCGACAGTGCTCTTCGATTTCTTGGAAAAACAGCGTATAATTCTTCAGCAGTCACTTTTCCTGTGTCCATTCTCAAGATTCTCATAAAGGACGGAAGAGCTTTAGATGCATATAAGCTTCTCATGGGGGTTCAAGATGATTTACCGGTCATGTATGTCGATTACGGCGTTGTGATTCATGGCTTATGCAAGGGAGGATATCTCAATAAAGCATTGGATCTTTGCACCTTAATTGAAAAGAAGGGGATGAATTTGAACATAGTCATATATAATTCAATAATAAATGGATTGTGCCATGACGGTTGTCTTATTGAAGCATTTCGGTTATTTGATTCTCTAGAGAAACTTAATTTGATGACCTCTGAGATAACTTATGCTACATTAATTTACGCTTTATGTAGGGAGGGATATCTGCAAGACGCGGAGTATGTTTTCAAGAAAATGGTTCTCAATGGATTTCAACCAAAAACACAAGTTTACAATTCATTACTCGTTGCCATATCTAAAATCGGACAATTAGAGAAGGTATTTGAGCTTCTAAATGATATGGAGAAACAATACATTAAGTTTGACAATTTCACAGTTAGCTCTGTAATAAATTGCTACTGCCAGAAGGGCGACATGGAAGGAGCCCTTGAATTCTATTACAAGTTCAAGGGGAAGGATATATCACCCGATTTTTTGGGGTTCTTGTATTTGATAAGAGGTCTATGTACCAAGGGAAGAATGGAAGAAACAAGGAGTGTCTTGAGAGAAATGCTACAGTCCAAGAATGTTGCAGAGATGATTAACATTGTCAACAGCAGGGTTGATACCGAGTCAATATGTGATTTTCTCGCTACATTGTGTGACCAAGGACGCATTCAAGAAGCTGTTAAAGTTCTGAATGTAATCGCCTCAGAGTTTTTTCCTGCTCAAAGGTCGTCTACTTATAATAATCAAGGATCCGATAAATCACACAAGAGTTATGAATCAATGGATATCGGTTCAAAATCTTCCACCTCTCTACTTTCGTATTGCAAAAGTGGTTTAGATTTTGAATCTTGTGATACCAGGGATAAAAGGAATCACATGACTAATAATGATAGTCATTTGAAAAAATCCCGACTGCGTAACTTTGATTTCTATTATTCTAGAATTGCTGCACTTTGTACTAAAGGGGATCTGCAGGATGCTAATGAATTGGCAAAGATAATGGTTTCAGACATGACAGAGTCTATGAACTGA

Protein sequence

>Msa0202010

IFFPYLAASDLISEQHCNCDAKHFQNQTFFFLHSMLFSSTKPFTFSLQTLLKHGLTPTPNSITTFFSFLFNLRKFNLIINLFHQFTFNKIQIPHKTHEIFTWALLNSHNFNQAEQFMKENPHTTFGAWDALIHGLCSTRENPERILSVLRHCLVKNRVFISKTVFCCVIHRFCNVGHVGKAIEVVELMNGYRKDYLFDDFVSSSVVSAFCRAGKPELSLWFFDNFTRSRPNLVTYTAVVNALCKLGRVDEVCDLVRKMEEDGLDLDVVLYSVWVCGYVEEKVLVEVFRKMREMVEKGICHDFVSYTILIDGFSKLGDVEKSFTFLAKMIKEGIIPNKVTYTAIMSAYCKKGRVEEAFGVFKRMKDMGIELDEFVFVVLIDGFGRVGDFDSVFQLLVEMEKRGISPSVVTYNAVVNGLSKYGRTQEADEFSKNVTADVVTYSTLLHGYTKEDNVLGILQTKKRLEEAGISMDVVMCNVLIRALFMMQAYEDVYALYKGMPEMDLVPNSVTYCTMIDGYCKVGKINEALEVFDDFRKTSISSYACYNSIINGLCKKGMVEMAIEALLELDHKGLMLDTGTHRLLMKTIFKENSSKVVLDLVCRMQSLELDIYNAMCNDSIFLLCKRGLLDDAYQLWMAMKKKGLPVTCKSYHSLLRRLLCVVGNREQILPLLNCFLKEYGLFEPKVQKVLAQYLCLKDVDSALRFLGKTAYNSSAVTFPVSILKILIKDGRALDAYKLLMGVQDDLPVMYVDYGVVIHGLCKGGYLNKALDLCTLIEKKGMNLNIVIYNSIINGLCHDGCLIEAFRLFDSLEKLNLMTSEITYATLIYALCREGYLQDAEYVFKKMVLNGFQPKTQVYNSLLVAISKIGQLEKVFELLNDMEKQYIKFDNFTVSSVINCYCQKGDMEGALEFYYKFKGKDISPDFLGFLYLIRGLCTKGRMEETRSVLREMLQSKNVAEMINIVNSRVDTESICDFLATLCDQGRIQEAVKVLNVIASEFFPAQRSSTYNNQGSDKSHKSYESMDIGSKSSTSLLSYCKSGLDFESCDTRDKRNHMTNNDSHLKKSRLRNFDFYYSRIAALCTKGDLQDANELAKIMVSDMTESMN*