Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105440 | sp|Q9SSK5|MLP43_ARATH | 37.662 | 154 | 92 | 3 | 2 | 153 | 6 | 157 | 5.55e-31 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105440 | A0A396JKT2 | 93.464 | 153 | 10 | 0 | 1 | 153 | 5 | 157 | 9.10e-99 | 290 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011870 | Msa0105440 | 0.921026 | 6.060481e-88 | -8.615850e-47 |
| Msa0060690 | Msa0105440 | 0.900429 | 7.392981e-78 | -8.615850e-47 |
| Msa0072180 | Msa0105440 | 0.821683 | 3.544649e-53 | -8.615850e-47 |
| Msa0105440 | Msa0121300 | 0.819243 | 1.286737e-52 | -8.615850e-47 |
| Msa0105440 | Msa0150000 | 0.810673 | 1.025517e-50 | -8.615850e-47 |
| Msa0105440 | Msa0151660 | 0.877868 | 4.449928e-69 | -8.615850e-47 |
| Msa0105440 | Msa0166190 | 0.812717 | 3.684222e-51 | -8.615850e-47 |
| Msa0105440 | Msa0197170 | 0.812888 | 3.380245e-51 | -8.615850e-47 |
| Msa0105440 | Msa0224870 | 0.808043 | 3.759841e-50 | -8.615850e-47 |
| Msa0105440 | Msa0285420 | 0.808002 | 3.836204e-50 | -8.615850e-47 |
| Msa0105440 | Msa0287630 | 0.809702 | 1.660964e-50 | -8.615850e-47 |
| Msa0105440 | Msa0298000 | 0.822054 | 2.907544e-53 | -8.615850e-47 |
| Msa0105440 | Msa0303900 | 0.801191 | 1.011703e-48 | -8.615850e-47 |
| Msa0105440 | Msa0333770 | 0.809325 | 2.000725e-50 | -8.615850e-47 |
| Msa0105440 | Msa0345050 | 0.844068 | 9.502830e-59 | -8.615850e-47 |
| Msa0105440 | Msa0345890 | 0.805367 | 1.381177e-49 | -8.615850e-47 |
| Msa0105440 | Msa0354600 | 0.800271 | 1.558870e-48 | -8.615850e-47 |
| Msa0105440 | Msa0369990 | 0.809114 | 2.219986e-50 | -8.615850e-47 |
| Msa0105440 | Msa0405200 | 0.824424 | 8.132692e-54 | -8.615850e-47 |
| Msa0105440 | Msa0405210 | 0.801519 | 8.664864e-49 | -8.615850e-47 |
| Msa0105440 | Msa0449490 | 0.806400 | 8.377102e-50 | -8.615850e-47 |
| Msa0105440 | Msa0449500 | 0.802526 | 5.381778e-49 | -8.615850e-47 |
| Msa0105440 | Msa0454770 | 0.806507 | 7.955041e-50 | -8.615850e-47 |
| Msa0105440 | Msa0497680 | 0.800535 | 1.376854e-48 | -8.615850e-47 |
| Msa0105440 | Msa0531050 | 0.841479 | 4.634630e-58 | -8.615850e-47 |
| Msa0105440 | Msa0565180 | 0.811728 | 6.054529e-51 | -8.615850e-47 |
| Msa0105440 | Msa0566280 | 0.807274 | 5.477085e-50 | -8.615850e-47 |
| Msa0105440 | Msa0588040 | 0.818678 | 1.729572e-52 | -8.615850e-47 |
| Msa0105440 | Msa0597180 | 0.800963 | 1.126389e-48 | -8.615850e-47 |
| Msa0105440 | Msa0603310 | 0.803398 | 3.553026e-49 | -8.615850e-47 |
| Msa0105440 | Msa0628200 | 0.809017 | 2.329275e-50 | -8.615850e-47 |
| Msa0105440 | Msa0682110 | 0.835261 | 1.859976e-56 | -8.615850e-47 |
| Msa0105440 | Msa0682160 | 0.833296 | 5.786492e-56 | -8.615850e-47 |
| Msa0105440 | Msa0712880 | 0.816661 | 4.929644e-52 | -8.615850e-47 |
| Msa0105440 | Msa0716000 | 0.800557 | 1.362867e-48 | -8.615850e-47 |
| Msa0105440 | Msa0725580 | 0.828806 | 7.325856e-55 | -8.615850e-47 |
| Msa0105440 | Msa0829990 | 0.840864 | 6.725937e-58 | -8.615850e-47 |
| Msa0105440 | Msa0873880 | 0.818879 | 1.556972e-52 | -8.615850e-47 |
| Msa0105440 | Msa0873910 | 0.827581 | 1.445901e-54 | -8.615850e-47 |
| Msa0105440 | Msa0893220 | 0.805798 | 1.121980e-49 | -8.615850e-47 |
| Msa0105440 | Msa0905570 | 0.824834 | 6.510064e-54 | -8.615850e-47 |
| Msa0105440 | Msa0906660 | 0.810331 | 1.215399e-50 | -8.615850e-47 |
| Msa0105440 | Msa0906680 | 0.806482 | 8.053277e-50 | -8.615850e-47 |
| Msa0105440 | Msa0910170 | 0.803496 | 3.391314e-49 | -8.615850e-47 |
| Msa0105440 | Msa0928450 | 0.805442 | 1.332021e-49 | -8.615850e-47 |
| Msa0105440 | Msa0974710 | 0.810332 | 1.215077e-50 | -8.615850e-47 |
| Msa0105440 | Msa0975950 | 0.819597 | 1.068514e-52 | -8.615850e-47 |
| Msa0105440 | Msa0975960 | 0.842708 | 2.192778e-58 | -8.615850e-47 |
| Msa0105440 | Msa1001120 | 0.818179 | 2.243125e-52 | -8.615850e-47 |
| Msa0105440 | Msa1007900 | 0.811866 | 5.651647e-51 | -8.615850e-47 |
| Msa0105440 | Msa1062060 | 0.820468 | 6.752698e-53 | -8.615850e-47 |
| Msa0105440 | Msa1075090 | 0.803657 | 3.139433e-49 | -8.615850e-47 |
| Msa0105440 | Msa1080130 | 0.807244 | 5.555907e-50 | -8.615850e-47 |
| Msa0105440 | Msa1095590 | 0.805526 | 1.279478e-49 | -8.615850e-47 |
| Msa0105440 | Msa1107220 | 0.813049 | 3.115676e-51 | -8.615850e-47 |
| Msa0105440 | Msa1108560 | 0.801309 | 9.570370e-49 | -8.615850e-47 |
| Msa0105440 | Msa1115980 | 0.803827 | 2.894198e-49 | -8.615850e-47 |
| Msa0105440 | Msa1116090 | 0.805892 | 1.072108e-49 | -8.615850e-47 |
| Msa0105440 | Msa1129120 | -0.802274 | 6.065164e-49 | -8.615850e-47 |
| Msa0105440 | Msa1136630 | 0.810502 | 1.116476e-50 | -8.615850e-47 |
| Msa0105440 | Msa1136760 | 0.802401 | 5.710575e-49 | -8.615850e-47 |
| Msa0105440 | Msa1143260 | 0.819214 | 1.306350e-52 | -8.615850e-47 |
| Msa0105440 | Msa1150760 | 0.800428 | 1.447732e-48 | -8.615850e-47 |
| Msa0105440 | Msa1167310 | 0.822504 | 2.286220e-53 | -8.615850e-47 |
| Msa0105440 | Msa1185270 | 0.800834 | 1.196511e-48 | -8.615850e-47 |
| Msa0105440 | Msa1187480 | 0.823440 | 1.383316e-53 | -8.615850e-47 |
| Msa0105440 | Msa1202110 | 0.835734 | 1.412241e-56 | -8.615850e-47 |
| Msa0105440 | Msa1202800 | 0.848880 | 4.623106e-60 | -8.615850e-47 |
| Msa0105440 | Msa1215740 | 0.810011 | 1.424817e-50 | -8.615850e-47 |
| Msa0105440 | Msa1254870 | 0.833186 | 6.163784e-56 | -8.615850e-47 |
| Msa0105440 | Msa1254910 | 0.826898 | 2.107047e-54 | -8.615850e-47 |
| Msa0105440 | Msa1255210 | 0.834626 | 2.687955e-56 | -8.615850e-47 |
| Msa0105440 | Msa1262900 | 0.802271 | 6.071476e-49 | -8.615850e-47 |
| Msa0105440 | Msa1269200 | 0.813267 | 2.790805e-51 | -8.615850e-47 |
| Msa0105440 | Msa1284020 | 0.816098 | 6.588575e-52 | -8.615850e-47 |
| Msa0105440 | Msa1295650 | 0.834184 | 3.470592e-56 | -8.615850e-47 |
| Msa0105440 | Msa1323070 | 0.801620 | 8.262693e-49 | -8.615850e-47 |
| Msa0105440 | Msa1328430 | 0.834573 | 2.771861e-56 | -8.615850e-47 |
| Msa0105440 | Msa1332420 | 0.803803 | 2.928873e-49 | -8.615850e-47 |
| Msa0105440 | Msa1340440 | 0.812582 | 3.942498e-51 | -8.615850e-47 |
| Msa0105440 | Msa1388720 | -0.800711 | 1.267724e-48 | -8.615850e-47 |
| Msa0105440 | Msa1398140 | 0.803061 | 4.172959e-49 | -8.615850e-47 |
| Msa0105440 | Msa1413150 | 0.800340 | 1.508734e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105440 | MtrunA17_Chr1g0160381 | 93.464 | 153 | 10 | 0 | 1 | 153 | 5 | 157 | 1.75e-102 | 290 |
| Msa0105440 | MtrunA17_Chr1g0160371 | 86.928 | 153 | 20 | 0 | 1 | 153 | 1 | 153 | 4.61e-97 | 276 |
| Msa0105440 | MtrunA17_Chr1g0160391 | 58.065 | 155 | 60 | 2 | 1 | 150 | 1 | 155 | 8.71e-61 | 185 |
| Msa0105440 | MtrunA17_Chr1g0160351 | 78.261 | 92 | 20 | 0 | 62 | 153 | 3 | 94 | 3.90e-48 | 150 |
| Msa0105440 | MtrunA17_Chr8g0355721 | 40.523 | 153 | 88 | 2 | 1 | 152 | 1 | 151 | 4.50e-38 | 127 |
| Msa0105440 | MtrunA17_Chr8g0355781 | 39.869 | 153 | 89 | 2 | 1 | 152 | 1 | 151 | 6.19e-38 | 126 |
| Msa0105440 | MtrunA17_Chr8g0355661 | 39.216 | 153 | 89 | 3 | 1 | 152 | 1 | 150 | 1.96e-36 | 123 |
| Msa0105440 | MtrunA17_Chr8g0355811 | 38.562 | 153 | 90 | 3 | 1 | 152 | 1 | 150 | 3.24e-36 | 122 |
| Msa0105440 | MtrunA17_Chr8g0355821 | 38.562 | 153 | 90 | 3 | 1 | 152 | 1 | 150 | 4.67e-36 | 122 |
| Msa0105440 | MtrunA17_Chr8g0355771 | 38.562 | 153 | 90 | 3 | 1 | 152 | 1 | 150 | 5.40e-36 | 122 |
| Msa0105440 | MtrunA17_Chr8g0355761 | 36.601 | 153 | 94 | 2 | 1 | 152 | 1 | 151 | 9.76e-36 | 121 |
| Msa0105440 | MtrunA17_Chr8g0355741 | 37.662 | 154 | 93 | 2 | 1 | 153 | 1 | 152 | 4.06e-35 | 119 |
| Msa0105440 | MtrunA17_Chr8g0355801 | 37.255 | 153 | 92 | 3 | 1 | 152 | 1 | 150 | 2.62e-34 | 117 |
| Msa0105440 | MtrunA17_Chr8g0355791 | 37.255 | 153 | 92 | 3 | 1 | 152 | 1 | 150 | 3.95e-34 | 117 |
| Msa0105440 | MtrunA17_Chr8g0355641 | 38.961 | 154 | 91 | 2 | 1 | 153 | 1 | 152 | 4.58e-34 | 117 |
| Msa0105440 | MtrunA17_Chr1g0160801 | 37.662 | 154 | 86 | 5 | 1 | 152 | 1 | 146 | 3.31e-28 | 101 |
| Msa0105440 | MtrunA17_Chr8g0339261 | 35.897 | 156 | 94 | 4 | 1 | 153 | 1 | 153 | 4.04e-28 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105440 | AT1G70890.1 | 37.662 | 154 | 92 | 3 | 2 | 153 | 6 | 157 | 5.64e-32 | 112 |
| Msa0105440 | AT5G28010.1 | 38.961 | 154 | 90 | 3 | 2 | 153 | 14 | 165 | 2.42e-31 | 110 |
| Msa0105440 | AT5G28010.2 | 38.961 | 154 | 90 | 3 | 2 | 153 | 14 | 165 | 2.42e-31 | 110 |
| Msa0105440 | AT1G70840.1 | 35.065 | 154 | 96 | 3 | 2 | 153 | 19 | 170 | 1.20e-30 | 108 |
| Msa0105440 | AT1G70830.5 | 37.013 | 154 | 93 | 3 | 2 | 153 | 21 | 172 | 3.93e-30 | 107 |
| Msa0105440 | AT1G70830.3 | 37.013 | 154 | 93 | 3 | 2 | 153 | 21 | 172 | 9.82e-30 | 107 |
| Msa0105440 | AT1G70830.2 | 37.013 | 154 | 93 | 3 | 2 | 153 | 21 | 172 | 4.24e-29 | 107 |
| Msa0105440 | AT1G70830.1 | 37.013 | 154 | 93 | 3 | 2 | 153 | 21 | 172 | 1.83e-28 | 107 |
| Msa0105440 | AT1G70830.1 | 36.364 | 154 | 94 | 3 | 2 | 153 | 183 | 334 | 4.03e-27 | 103 |
| Msa0105440 | AT1G70830.4 | 36.364 | 154 | 94 | 3 | 2 | 153 | 136 | 287 | 9.91e-28 | 104 |
| Msa0105440 | AT1G70830.4 | 36.458 | 96 | 58 | 2 | 59 | 153 | 32 | 125 | 9.64e-14 | 67.0 |
| Msa0105440 | AT1G70850.2 | 34.211 | 152 | 96 | 3 | 2 | 151 | 8 | 157 | 1.42e-26 | 100 |
| Msa0105440 | AT1G70850.3 | 34.211 | 152 | 96 | 3 | 2 | 151 | 8 | 157 | 5.68e-26 | 100 |
| Msa0105440 | AT1G70850.3 | 35.664 | 143 | 88 | 3 | 13 | 153 | 175 | 315 | 4.83e-25 | 98.2 |
| Msa0105440 | AT1G70850.1 | 34.211 | 152 | 96 | 3 | 2 | 151 | 8 | 157 | 5.68e-26 | 100 |
| Msa0105440 | AT1G70850.1 | 35.664 | 143 | 88 | 3 | 13 | 153 | 175 | 315 | 4.83e-25 | 98.2 |
| Msa0105440 | AT5G28000.1 | 33.766 | 154 | 98 | 3 | 2 | 153 | 12 | 163 | 6.50e-26 | 96.7 |
| Msa0105440 | AT1G70880.1 | 32.468 | 154 | 100 | 3 | 2 | 153 | 7 | 158 | 7.70e-25 | 94.0 |
| Msa0105440 | AT1G23130.1 | 27.451 | 153 | 108 | 2 | 2 | 153 | 9 | 159 | 1.70e-24 | 93.2 |
| Msa0105440 | AT1G14930.1 | 35.294 | 153 | 95 | 3 | 1 | 152 | 1 | 150 | 1.13e-23 | 90.9 |
| Msa0105440 | AT1G70870.1 | 36.842 | 152 | 82 | 5 | 1 | 152 | 1 | 138 | 2.74e-23 | 89.4 |
| Msa0105440 | AT1G35260.1 | 31.293 | 147 | 96 | 3 | 7 | 151 | 6 | 149 | 2.86e-23 | 89.7 |
| Msa0105440 | AT1G23120.1 | 31.373 | 153 | 99 | 3 | 1 | 153 | 1 | 147 | 9.23e-21 | 83.2 |
| Msa0105440 | AT1G23120.2 | 31.373 | 153 | 99 | 3 | 1 | 153 | 51 | 197 | 3.13e-20 | 83.2 |
| Msa0105440 | AT1G14950.1 | 30.065 | 153 | 103 | 3 | 1 | 152 | 1 | 150 | 6.02e-19 | 78.6 |
| Msa0105440 | AT4G14060.1 | 30.065 | 153 | 103 | 3 | 1 | 152 | 1 | 150 | 1.39e-18 | 77.4 |
| Msa0105440 | AT1G35310.1 | 30.282 | 142 | 95 | 3 | 13 | 153 | 12 | 150 | 7.70e-18 | 75.5 |
| Msa0105440 | AT1G24020.1 | 35.802 | 162 | 85 | 7 | 1 | 153 | 1 | 152 | 3.45e-17 | 73.9 |
| Msa0105440 | AT1G24020.2 | 35.802 | 162 | 85 | 7 | 1 | 153 | 1 | 152 | 3.45e-17 | 73.9 |
| Msa0105440 | AT2G01520.1 | 29.412 | 153 | 104 | 3 | 1 | 152 | 1 | 150 | 4.98e-17 | 73.6 |
| Msa0105440 | AT1G14940.1 | 29.605 | 152 | 103 | 3 | 1 | 151 | 1 | 149 | 5.22e-17 | 73.6 |
| Msa0105440 | AT1G30990.1 | 27.632 | 152 | 105 | 3 | 1 | 151 | 1 | 148 | 3.50e-16 | 71.2 |
| Msa0105440 | AT2G01530.1 | 29.412 | 153 | 104 | 3 | 1 | 152 | 1 | 150 | 2.13e-15 | 69.3 |
| Msa0105440 | AT1G14960.1 | 28.105 | 153 | 106 | 3 | 1 | 152 | 1 | 150 | 2.91e-15 | 68.9 |
| Msa0105440 | AT3G26460.1 | 28.105 | 153 | 107 | 2 | 1 | 152 | 1 | 151 | 6.47e-13 | 62.8 |
| Msa0105440 | AT3G26450.1 | 28.571 | 154 | 105 | 4 | 1 | 152 | 1 | 151 | 9.35e-13 | 62.4 |
| Msa0105440 | AT4G23670.1 | 29.412 | 153 | 104 | 3 | 1 | 152 | 1 | 150 | 1.69e-12 | 61.6 |
| Msa0105440 | AT4G23680.1 | 27.451 | 153 | 107 | 3 | 1 | 152 | 1 | 150 | 7.20e-12 | 60.1 |
Find 30 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTACTTCTGTGGTGATATT+AGG | 0.304651 | 1_3:-13959524 | None:intergenic |
| TGAGAGTTACAAGAGTTTAA+AGG | 0.313337 | 1_3:+13960190 | Msa0105440:CDS |
| ATGGTGGTGGGATTGTTAAA+TGG | 0.324878 | 1_3:+13960240 | Msa0105440:CDS |
| GAAGGTGACTGGGAAAATAT+TGG | 0.418929 | 1_3:+13959563 | Msa0105440:CDS |
| ATACTTGGACCTTGCTGTAA+AGG | 0.426075 | 1_3:+13960316 | Msa0105440:CDS |
| GCAAGGTCCAAGTATGAATC+AGG | 0.441032 | 1_3:-13960308 | None:intergenic |
| TGGTGGTGGGATTGTTAAAT+GGG | 0.470252 | 1_3:+13960241 | Msa0105440:CDS |
| TGTATCTCCTGATTCATACT+TGG | 0.511390 | 1_3:+13960301 | Msa0105440:CDS |
| CATGGCTTTAAGTGGGAAAG+TGG | 0.512659 | 1_3:+13959430 | None:intergenic |
| CGAATATGAGAAGCTAAAAG+AGG | 0.515741 | 1_3:+13960268 | Msa0105440:CDS |
| GTAGAGTGCATGAAGGTGAC+TGG | 0.523294 | 1_3:+13959552 | Msa0105440:CDS |
| AGAAGAGACATGGCTTTAAG+TGG | 0.526395 | 1_3:+13959422 | None:intergenic |
| ATTCATAAAGAACATGGTGG+TGG | 0.537340 | 1_3:+13960227 | Msa0105440:CDS |
| ATATTGGTTCTATCAAGCAC+TGG | 0.538736 | 1_3:+13959579 | Msa0105440:CDS |
| TTCATAAAGAACATGGTGGT+GGG | 0.570285 | 1_3:+13960228 | Msa0105440:CDS |
| AATATCACCACAGAAGTACA+TGG | 0.570466 | 1_3:+13959527 | Msa0105440:CDS |
| AAGCTAAAAGAGGAAACTAC+AGG | 0.574676 | 1_3:+13960278 | Msa0105440:CDS |
| TATTGGTTCTATCAAGCACT+GGG | 0.594586 | 1_3:+13959580 | Msa0105440:CDS |
| TCTACCTCCATGTACTTCTG+TGG | 0.594643 | 1_3:-13959534 | None:intergenic |
| TAGAGTGCATGAAGGTGACT+GGG | 0.605256 | 1_3:+13959553 | Msa0105440:CDS |
| CAAGTGATTCATAAAGAACA+TGG | 0.605539 | 1_3:+13960221 | Msa0105440:CDS |
| TATTGATTCTCATCTTGTCA+AGG | 0.605627 | 1_3:+13960349 | Msa0105440:CDS |
| GGCTTTAAGTGGGAAAGTGG+AGG | 0.606303 | 1_3:+13959433 | Msa0105440:CDS |
| AAGCACTGGGAATTTACAGT+AGG | 0.622307 | 1_3:+13959593 | Msa0105440:CDS |
| GAAGAGACATGGCTTTAAGT+GGG | 0.623024 | 1_3:+13959423 | None:intergenic |
| CATGGAGGTAGAGTGCATGA+AGG | 0.659264 | 1_3:+13959545 | Msa0105440:CDS |
| GAAGTAGAGATTCAAGCACC+TGG | 0.664321 | 1_3:+13959458 | Msa0105440:CDS |
| ATATTATAGAACTTAGCACC+AGG | 0.680852 | 1_3:-13959476 | None:intergenic |
| GTGATTCATAAAGAACATGG+TGG | 0.735641 | 1_3:+13960224 | Msa0105440:CDS |
| ATCACCACAGAAGTACATGG+AGG | 0.776492 | 1_3:+13959530 | Msa0105440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATATGTTTTGTTTACAT+TGG | + | chr1_3:13960007-13960026 | Msa0105440:intron | 15.0% |
| !!! | TAAATATGTTTTGTTTACAT+TGG | + | chr1_3:13960007-13960026 | Msa0105440:intron | 15.0% |
| !! | TAGTAAAACTATGAAACATA+AGG | - | chr1_3:13959629-13959648 | None:intergenic | 20.0% |
| !! | AGTGTTTATAAATGACAATT+TGG | - | chr1_3:13959818-13959837 | None:intergenic | 20.0% |
| !! | TCATTTGCTTAAAAAAAACA+AGG | + | chr1_3:13959964-13959983 | Msa0105440:intron | 20.0% |
| !!! | TTATTTATTTTCCCTAATCA+TGG | + | chr1_3:13960044-13960063 | Msa0105440:intron | 20.0% |
| !!! | ATCATATATAGCATTTTTGA+TGG | + | chr1_3:13960158-13960177 | Msa0105440:CDS | 20.0% |
| !! | TAGTAAAACTATGAAACATA+AGG | - | chr1_3:13959629-13959648 | None:intergenic | 20.0% |
| !! | AGTGTTTATAAATGACAATT+TGG | - | chr1_3:13959818-13959837 | None:intergenic | 20.0% |
| !! | TCATTTGCTTAAAAAAAACA+AGG | + | chr1_3:13959964-13959983 | Msa0105440:intron | 20.0% |
| !!! | TTATTTATTTTCCCTAATCA+TGG | + | chr1_3:13960044-13960063 | Msa0105440:intron | 20.0% |
| !!! | ATCATATATAGCATTTTTGA+TGG | + | chr1_3:13960158-13960177 | Msa0105440:CDS | 20.0% |
| ! | GAATTTACAGTAGGTAATTA+AGG | + | chr1_3:13959602-13959621 | Msa0105440:intron | 25.0% |
| !! | ACTATTTTATTGCTCATGAA+AGG | + | chr1_3:13959645-13959664 | Msa0105440:intron | 25.0% |
| ! | TAAATCAAGTTCCATGATTA+GGG | - | chr1_3:13960058-13960077 | None:intergenic | 25.0% |
| ! | TTAAATCAAGTTCCATGATT+AGG | - | chr1_3:13960059-13960078 | None:intergenic | 25.0% |
| ! | GAATTTACAGTAGGTAATTA+AGG | + | chr1_3:13959602-13959621 | Msa0105440:intron | 25.0% |
| !! | ACTATTTTATTGCTCATGAA+AGG | + | chr1_3:13959645-13959664 | Msa0105440:intron | 25.0% |
| ! | TAAATCAAGTTCCATGATTA+GGG | - | chr1_3:13960058-13960077 | None:intergenic | 25.0% |
| ! | TTAAATCAAGTTCCATGATT+AGG | - | chr1_3:13960059-13960078 | None:intergenic | 25.0% |
| ATATTATAGAACTTAGCACC+AGG | - | chr1_3:13959479-13959498 | None:intergenic | 30.0% | |
| ! | TAACATCAACAAAAGAGTGT+TGG | - | chr1_3:13959732-13959751 | None:intergenic | 30.0% |
| !! | TTTGTTTTCTTCCTTCTGTA+GGG | - | chr1_3:13960094-13960113 | None:intergenic | 30.0% |
| TGAGAGTTACAAGAGTTTAA+AGG | + | chr1_3:13960190-13960209 | Msa0105440:CDS | 30.0% | |
| CAAGTGATTCATAAAGAACA+TGG | + | chr1_3:13960221-13960240 | Msa0105440:CDS | 30.0% | |
| !! | TATTGATTCTCATCTTGTCA+AGG | + | chr1_3:13960349-13960368 | Msa0105440:CDS | 30.0% |
| ATATTATAGAACTTAGCACC+AGG | - | chr1_3:13959479-13959498 | None:intergenic | 30.0% | |
| ! | TAACATCAACAAAAGAGTGT+TGG | - | chr1_3:13959732-13959751 | None:intergenic | 30.0% |
| !! | TTTGTTTTCTTCCTTCTGTA+GGG | - | chr1_3:13960094-13960113 | None:intergenic | 30.0% |
| TGAGAGTTACAAGAGTTTAA+AGG | + | chr1_3:13960190-13960209 | Msa0105440:CDS | 30.0% | |
| CAAGTGATTCATAAAGAACA+TGG | + | chr1_3:13960221-13960240 | Msa0105440:CDS | 30.0% | |
| !! | TATTGATTCTCATCTTGTCA+AGG | + | chr1_3:13960349-13960368 | Msa0105440:CDS | 30.0% |
| TGTACTTCTGTGGTGATATT+AGG | - | chr1_3:13959527-13959546 | None:intergenic | 35.0% | |
| ! | AATATCACCACAGAAGTACA+TGG | + | chr1_3:13959527-13959546 | Msa0105440:CDS | 35.0% |
| !! | ATATTGGTTCTATCAAGCAC+TGG | + | chr1_3:13959579-13959598 | Msa0105440:CDS | 35.0% |
| !! | TATTGGTTCTATCAAGCACT+GGG | + | chr1_3:13959580-13959599 | Msa0105440:CDS | 35.0% |
| !! | ATCAACAAAAGAGTGTTGGA+AGG | - | chr1_3:13959728-13959747 | None:intergenic | 35.0% |
| !!! | CTTTGTTTTCTTCCTTCTGT+AGG | - | chr1_3:13960095-13960114 | None:intergenic | 35.0% |
| ! | TAGCATTTTTGATGGAGAAG+TGG | + | chr1_3:13960166-13960185 | Msa0105440:CDS | 35.0% |
| ! | AGCATTTTTGATGGAGAAGT+GGG | + | chr1_3:13960167-13960186 | Msa0105440:CDS | 35.0% |
| GTGATTCATAAAGAACATGG+TGG | + | chr1_3:13960224-13960243 | Msa0105440:CDS | 35.0% | |
| ATTCATAAAGAACATGGTGG+TGG | + | chr1_3:13960227-13960246 | Msa0105440:CDS | 35.0% | |
| TTCATAAAGAACATGGTGGT+GGG | + | chr1_3:13960228-13960247 | Msa0105440:CDS | 35.0% | |
| CGAATATGAGAAGCTAAAAG+AGG | + | chr1_3:13960268-13960287 | Msa0105440:CDS | 35.0% | |
| AAGCTAAAAGAGGAAACTAC+AGG | + | chr1_3:13960278-13960297 | Msa0105440:CDS | 35.0% | |
| TGTATCTCCTGATTCATACT+TGG | + | chr1_3:13960301-13960320 | Msa0105440:CDS | 35.0% | |
| TGTACTTCTGTGGTGATATT+AGG | - | chr1_3:13959527-13959546 | None:intergenic | 35.0% | |
| ! | AATATCACCACAGAAGTACA+TGG | + | chr1_3:13959527-13959546 | Msa0105440:CDS | 35.0% |
| !! | ATATTGGTTCTATCAAGCAC+TGG | + | chr1_3:13959579-13959598 | Msa0105440:CDS | 35.0% |
| !! | TATTGGTTCTATCAAGCACT+GGG | + | chr1_3:13959580-13959599 | Msa0105440:CDS | 35.0% |
| !! | ATCAACAAAAGAGTGTTGGA+AGG | - | chr1_3:13959728-13959747 | None:intergenic | 35.0% |
| !!! | CTTTGTTTTCTTCCTTCTGT+AGG | - | chr1_3:13960095-13960114 | None:intergenic | 35.0% |
| ! | TAGCATTTTTGATGGAGAAG+TGG | + | chr1_3:13960166-13960185 | Msa0105440:CDS | 35.0% |
| ! | AGCATTTTTGATGGAGAAGT+GGG | + | chr1_3:13960167-13960186 | Msa0105440:CDS | 35.0% |
| GTGATTCATAAAGAACATGG+TGG | + | chr1_3:13960224-13960243 | Msa0105440:CDS | 35.0% | |
| ATTCATAAAGAACATGGTGG+TGG | + | chr1_3:13960227-13960246 | Msa0105440:CDS | 35.0% | |
| TTCATAAAGAACATGGTGGT+GGG | + | chr1_3:13960228-13960247 | Msa0105440:CDS | 35.0% | |
| CGAATATGAGAAGCTAAAAG+AGG | + | chr1_3:13960268-13960287 | Msa0105440:CDS | 35.0% | |
| AAGCTAAAAGAGGAAACTAC+AGG | + | chr1_3:13960278-13960297 | Msa0105440:CDS | 35.0% | |
| TGTATCTCCTGATTCATACT+TGG | + | chr1_3:13960301-13960320 | Msa0105440:CDS | 35.0% | |
| GAAGGTGACTGGGAAAATAT+TGG | + | chr1_3:13959563-13959582 | Msa0105440:CDS | 40.0% | |
| !! | AAGCACTGGGAATTTACAGT+AGG | + | chr1_3:13959593-13959612 | Msa0105440:CDS | 40.0% |
| !! | ACAAAAGAGTGTTGGAAGGA+GGG | - | chr1_3:13959724-13959743 | None:intergenic | 40.0% |
| !! | AACAAAAGAGTGTTGGAAGG+AGG | - | chr1_3:13959725-13959744 | None:intergenic | 40.0% |
| TACTTGTGAAACCCTACAGA+AGG | + | chr1_3:13960080-13960099 | Msa0105440:intron | 40.0% | |
| !! | ATGGTGGTGGGATTGTTAAA+TGG | + | chr1_3:13960240-13960259 | Msa0105440:CDS | 40.0% |
| !! | TGGTGGTGGGATTGTTAAAT+GGG | + | chr1_3:13960241-13960260 | Msa0105440:CDS | 40.0% |
| ! | ATACTTGGACCTTGCTGTAA+AGG | + | chr1_3:13960316-13960335 | Msa0105440:CDS | 40.0% |
| ! | CTTTTGTGACCTTTACAGCA+AGG | - | chr1_3:13960328-13960347 | None:intergenic | 40.0% |
| GAAGGTGACTGGGAAAATAT+TGG | + | chr1_3:13959563-13959582 | Msa0105440:CDS | 40.0% | |
| !! | AAGCACTGGGAATTTACAGT+AGG | + | chr1_3:13959593-13959612 | Msa0105440:CDS | 40.0% |
| !! | ACAAAAGAGTGTTGGAAGGA+GGG | - | chr1_3:13959724-13959743 | None:intergenic | 40.0% |
| !! | AACAAAAGAGTGTTGGAAGG+AGG | - | chr1_3:13959725-13959744 | None:intergenic | 40.0% |
| TACTTGTGAAACCCTACAGA+AGG | + | chr1_3:13960080-13960099 | Msa0105440:intron | 40.0% | |
| !! | ATGGTGGTGGGATTGTTAAA+TGG | + | chr1_3:13960240-13960259 | Msa0105440:CDS | 40.0% |
| !! | TGGTGGTGGGATTGTTAAAT+GGG | + | chr1_3:13960241-13960260 | Msa0105440:CDS | 40.0% |
| ! | ATACTTGGACCTTGCTGTAA+AGG | + | chr1_3:13960316-13960335 | Msa0105440:CDS | 40.0% |
| ! | CTTTTGTGACCTTTACAGCA+AGG | - | chr1_3:13960328-13960347 | None:intergenic | 40.0% |
| GAAGTAGAGATTCAAGCACC+TGG | + | chr1_3:13959458-13959477 | Msa0105440:CDS | 45.0% | |
| ! | ATCACCACAGAAGTACATGG+AGG | + | chr1_3:13959530-13959549 | Msa0105440:CDS | 45.0% |
| TCTACCTCCATGTACTTCTG+TGG | - | chr1_3:13959537-13959556 | None:intergenic | 45.0% | |
| TAGAGTGCATGAAGGTGACT+GGG | + | chr1_3:13959553-13959572 | Msa0105440:CDS | 45.0% | |
| GCAAGGTCCAAGTATGAATC+AGG | - | chr1_3:13960311-13960330 | None:intergenic | 45.0% | |
| GAAGTAGAGATTCAAGCACC+TGG | + | chr1_3:13959458-13959477 | Msa0105440:CDS | 45.0% | |
| ! | ATCACCACAGAAGTACATGG+AGG | + | chr1_3:13959530-13959549 | Msa0105440:CDS | 45.0% |
| TCTACCTCCATGTACTTCTG+TGG | - | chr1_3:13959537-13959556 | None:intergenic | 45.0% | |
| TAGAGTGCATGAAGGTGACT+GGG | + | chr1_3:13959553-13959572 | Msa0105440:CDS | 45.0% | |
| GCAAGGTCCAAGTATGAATC+AGG | - | chr1_3:13960311-13960330 | None:intergenic | 45.0% | |
| !! | GGCTTTAAGTGGGAAAGTGG+AGG | + | chr1_3:13959433-13959452 | Msa0105440:CDS | 50.0% |
| CATGGAGGTAGAGTGCATGA+AGG | + | chr1_3:13959545-13959564 | Msa0105440:CDS | 50.0% | |
| GTAGAGTGCATGAAGGTGAC+TGG | + | chr1_3:13959552-13959571 | Msa0105440:CDS | 50.0% | |
| !! | GGCTTTAAGTGGGAAAGTGG+AGG | + | chr1_3:13959433-13959452 | Msa0105440:CDS | 50.0% |
| CATGGAGGTAGAGTGCATGA+AGG | + | chr1_3:13959545-13959564 | Msa0105440:CDS | 50.0% | |
| GTAGAGTGCATGAAGGTGAC+TGG | + | chr1_3:13959552-13959571 | Msa0105440:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 13959431 | 13960376 | 13959431 | ID=Msa0105440;Name=Msa0105440 |
| chr1_3 | mRNA | 13959431 | 13960376 | 13959431 | ID=Msa0105440-mRNA-1;Parent=Msa0105440;Name=Msa0105440-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0|0|1|1|1|2|0|153 |
| chr1_3 | exon | 13959431 | 13959614 | 13959431 | ID=Msa0105440-mRNA-1:exon:5464;Parent=Msa0105440-mRNA-1 |
| chr1_3 | exon | 13960099 | 13960376 | 13960099 | ID=Msa0105440-mRNA-1:exon:5465;Parent=Msa0105440-mRNA-1 |
| chr1_3 | CDS | 13959431 | 13959614 | 13959431 | ID=Msa0105440-mRNA-1:cds;Parent=Msa0105440-mRNA-1 |
| chr1_3 | CDS | 13960099 | 13960376 | 13960099 | ID=Msa0105440-mRNA-1:cds;Parent=Msa0105440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
