Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011870 | sp|Q9SSK5|MLP43_ARATH | 37.662 | 154 | 92 | 3 | 2 | 153 | 6 | 157 | 2.07e-31 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011870 | Msa0025560 | 0.802363 | 5.812014e-49 | -8.615850e-47 |
| Msa0011870 | Msa0060410 | 0.803671 | 3.119080e-49 | -8.615850e-47 |
| Msa0011870 | Msa0060690 | 0.958226 | 3.972676e-116 | -8.615850e-47 |
| Msa0011870 | Msa0072180 | 0.821809 | 3.314817e-53 | -8.615850e-47 |
| Msa0011870 | Msa0073110 | 0.807379 | 5.201273e-50 | -8.615850e-47 |
| Msa0011870 | Msa0105440 | 0.921026 | 6.060481e-88 | -8.615850e-47 |
| Msa0011870 | Msa0120450 | 0.807190 | 5.705955e-50 | -8.615850e-47 |
| Msa0011870 | Msa0121300 | 0.824751 | 6.811198e-54 | -8.615850e-47 |
| Msa0011870 | Msa0139680 | 0.807407 | 5.131473e-50 | -8.615850e-47 |
| Msa0011870 | Msa0141410 | 0.801057 | 1.077561e-48 | -8.615850e-47 |
| Msa0011870 | Msa0150000 | 0.801880 | 7.307128e-49 | -8.615850e-47 |
| Msa0011870 | Msa0151660 | 0.856158 | 3.887056e-62 | -8.615850e-47 |
| Msa0011870 | Msa0163690 | 0.813972 | 1.952459e-51 | -8.615850e-47 |
| Msa0011870 | Msa0166190 | 0.806997 | 6.268188e-50 | -8.615850e-47 |
| Msa0011870 | Msa0197170 | 0.826301 | 2.924690e-54 | -8.615850e-47 |
| Msa0011870 | Msa0224870 | 0.814509 | 1.485914e-51 | -8.615850e-47 |
| Msa0011870 | Msa0232060 | 0.807010 | 6.227379e-50 | -8.615850e-47 |
| Msa0011870 | Msa0234150 | 0.800615 | 1.326335e-48 | -8.615850e-47 |
| Msa0011870 | Msa0257760 | 0.805107 | 1.566206e-49 | -8.615850e-47 |
| Msa0011870 | Msa0287480 | 0.808378 | 3.189354e-50 | -8.615850e-47 |
| Msa0011870 | Msa0287630 | 0.804319 | 2.287385e-49 | -8.615850e-47 |
| Msa0011870 | Msa0298000 | 0.835131 | 2.005733e-56 | -8.615850e-47 |
| Msa0011870 | Msa0303900 | 0.805857 | 1.089942e-49 | -8.615850e-47 |
| Msa0011870 | Msa0333770 | 0.823564 | 1.294096e-53 | -8.615850e-47 |
| Msa0011870 | Msa0345050 | 0.852372 | 4.820500e-61 | -8.615850e-47 |
| Msa0011870 | Msa0354600 | 0.814227 | 1.714928e-51 | -8.615850e-47 |
| Msa0011870 | Msa0357310 | 0.806062 | 9.870681e-50 | -8.615850e-47 |
| Msa0011870 | Msa0369990 | 0.815204 | 1.042198e-51 | -8.615850e-47 |
| Msa0011870 | Msa0405200 | 0.832692 | 8.176937e-56 | -8.615850e-47 |
| Msa0011870 | Msa0417400 | 0.800119 | 1.673715e-48 | -8.615850e-47 |
| Msa0011870 | Msa0427560 | 0.801975 | 6.985619e-49 | -8.615850e-47 |
| Msa0011870 | Msa0441260 | 0.812856 | 3.434664e-51 | -8.615850e-47 |
| Msa0011870 | Msa0449490 | 0.820548 | 6.472104e-53 | -8.615850e-47 |
| Msa0011870 | Msa0449500 | 0.824420 | 8.149423e-54 | -8.615850e-47 |
| Msa0011870 | Msa0460600 | 0.805950 | 1.042124e-49 | -8.615850e-47 |
| Msa0011870 | Msa0497680 | 0.819429 | 1.166613e-52 | -8.615850e-47 |
| Msa0011870 | Msa0501080 | 0.816503 | 5.348877e-52 | -8.615850e-47 |
| Msa0011870 | Msa0531050 | 0.838904 | 2.179139e-57 | -8.615850e-47 |
| Msa0011870 | Msa0546590 | 0.810125 | 1.346789e-50 | -8.615850e-47 |
| Msa0011870 | Msa0565180 | 0.810124 | 1.347480e-50 | -8.615850e-47 |
| Msa0011870 | Msa0566280 | 0.807820 | 4.193555e-50 | -8.615850e-47 |
| Msa0011870 | Msa0567330 | 0.815098 | 1.099978e-51 | -8.615850e-47 |
| Msa0011870 | Msa0576320 | 0.804214 | 2.404690e-49 | -8.615850e-47 |
| Msa0011870 | Msa0597180 | 0.810816 | 9.548591e-51 | -8.615850e-47 |
| Msa0011870 | Msa0615070 | 0.801769 | 7.701023e-49 | -8.615850e-47 |
| Msa0011870 | Msa0643230 | 0.817732 | 2.831375e-52 | -8.615850e-47 |
| Msa0011870 | Msa0660650 | 0.806329 | 8.671038e-50 | -8.615850e-47 |
| Msa0011870 | Msa0682110 | 0.845115 | 4.967073e-59 | -8.615850e-47 |
| Msa0011870 | Msa0682160 | 0.837656 | 4.569308e-57 | -8.615850e-47 |
| Msa0011870 | Msa0702800 | 0.807765 | 4.307923e-50 | -8.615850e-47 |
| Msa0011870 | Msa0709140 | 0.804791 | 1.823480e-49 | -8.615850e-47 |
| Msa0011870 | Msa0712880 | 0.843341 | 1.487152e-58 | -8.615850e-47 |
| Msa0011870 | Msa0725580 | 0.834947 | 2.231759e-56 | -8.615850e-47 |
| Msa0011870 | Msa0798840 | 0.803482 | 3.414131e-49 | -8.615850e-47 |
| Msa0011870 | Msa0802600 | 0.814968 | 1.175573e-51 | -8.615850e-47 |
| Msa0011870 | Msa0828960 | 0.801137 | 1.037469e-48 | -8.615850e-47 |
| Msa0011870 | Msa0829990 | 0.822187 | 2.708734e-53 | -8.615850e-47 |
| Msa0011870 | Msa0848010 | 0.801383 | 9.239532e-49 | -8.615850e-47 |
| Msa0011870 | Msa0873880 | 0.821726 | 3.463421e-53 | -8.615850e-47 |
| Msa0011870 | Msa0873910 | 0.821029 | 5.015753e-53 | -8.615850e-47 |
| Msa0011870 | Msa0898970 | 0.815321 | 9.816129e-52 | -8.615850e-47 |
| Msa0011870 | Msa0905570 | 0.804830 | 1.789237e-49 | -8.615850e-47 |
| Msa0011870 | Msa0906660 | 0.803387 | 3.571885e-49 | -8.615850e-47 |
| Msa0011870 | Msa0906680 | 0.812982 | 3.223402e-51 | -8.615850e-47 |
| Msa0011870 | Msa0910170 | 0.818575 | 1.825240e-52 | -8.615850e-47 |
| Msa0011870 | Msa0928450 | 0.809556 | 1.784575e-50 | -8.615850e-47 |
| Msa0011870 | Msa0964510 | 0.816364 | 5.743649e-52 | -8.615850e-47 |
| Msa0011870 | Msa0967780 | 0.800357 | 1.497165e-48 | -8.615850e-47 |
| Msa0011870 | Msa0975950 | 0.816315 | 5.891517e-52 | -8.615850e-47 |
| Msa0011870 | Msa0975960 | 0.830511 | 2.817749e-55 | -8.615850e-47 |
| Msa0011870 | Msa1001120 | 0.802196 | 6.292455e-49 | -8.615850e-47 |
| Msa0011870 | Msa1029860 | 0.813839 | 2.088730e-51 | -8.615850e-47 |
| Msa0011870 | Msa1034950 | 0.802220 | 6.220282e-49 | -8.615850e-47 |
| Msa0011870 | Msa1035050 | 0.805680 | 1.187715e-49 | -8.615850e-47 |
| Msa0011870 | Msa1041250 | 0.803953 | 2.725438e-49 | -8.615850e-47 |
| Msa0011870 | Msa1049400 | 0.802808 | 4.706058e-49 | -8.615850e-47 |
| Msa0011870 | Msa1062060 | 0.830199 | 3.358565e-55 | -8.615850e-47 |
| Msa0011870 | Msa1075090 | 0.816434 | 5.541693e-52 | -8.615850e-47 |
| Msa0011870 | Msa1095590 | 0.803050 | 4.194164e-49 | -8.615850e-47 |
| Msa0011870 | Msa1100330 | 0.800837 | 1.194835e-48 | -8.615850e-47 |
| Msa0011870 | Msa1107220 | 0.806535 | 7.848562e-50 | -8.615850e-47 |
| Msa0011870 | Msa1108560 | 0.822648 | 2.117391e-53 | -8.615850e-47 |
| Msa0011870 | Msa1115980 | 0.808826 | 2.559624e-50 | -8.615850e-47 |
| Msa0011870 | Msa1129120 | -0.801517 | 8.675734e-49 | -8.615850e-47 |
| Msa0011870 | Msa1136630 | 0.817274 | 3.590261e-52 | -8.615850e-47 |
| Msa0011870 | Msa1136760 | 0.806661 | 7.380558e-50 | -8.615850e-47 |
| Msa0011870 | Msa1143260 | 0.800231 | 1.587705e-48 | -8.615850e-47 |
| Msa0011870 | Msa1147010 | 0.801613 | 8.290725e-49 | -8.615850e-47 |
| Msa0011870 | Msa1150760 | 0.811773 | 5.918966e-51 | -8.615850e-47 |
| Msa0011870 | Msa1167310 | 0.810394 | 1.178121e-50 | -8.615850e-47 |
| Msa0011870 | Msa1174280 | 0.801335 | 9.452546e-49 | -8.615850e-47 |
| Msa0011870 | Msa1202110 | 0.820799 | 5.666533e-53 | -8.615850e-47 |
| Msa0011870 | Msa1202800 | 0.855372 | 6.592974e-62 | -8.615850e-47 |
| Msa0011870 | Msa1205770 | 0.816991 | 4.155618e-52 | -8.615850e-47 |
| Msa0011870 | Msa1205810 | 0.800771 | 1.232530e-48 | -8.615850e-47 |
| Msa0011870 | Msa1215740 | 0.801305 | 9.587266e-49 | -8.615850e-47 |
| Msa0011870 | Msa1254870 | 0.819190 | 1.322872e-52 | -8.615850e-47 |
| Msa0011870 | Msa1254910 | 0.820092 | 8.234386e-53 | -8.615850e-47 |
| Msa0011870 | Msa1255210 | 0.838030 | 3.664006e-57 | -8.615850e-47 |
| Msa0011870 | Msa1262900 | 0.802630 | 5.120811e-49 | -8.615850e-47 |
| Msa0011870 | Msa1263110 | 0.804644 | 1.956334e-49 | -8.615850e-47 |
| Msa0011870 | Msa1284020 | 0.827968 | 1.167102e-54 | -8.615850e-47 |
| Msa0011870 | Msa1295650 | 0.843527 | 1.326711e-58 | -8.615850e-47 |
| Msa0011870 | Msa1307530 | 0.804417 | 2.182360e-49 | -8.615850e-47 |
| Msa0011870 | Msa1323070 | 0.803545 | 3.311954e-49 | -8.615850e-47 |
| Msa0011870 | Msa1328430 | 0.820656 | 6.112081e-53 | -8.615850e-47 |
| Msa0011870 | Msa1331570 | -0.807784 | 4.267457e-50 | -8.615850e-47 |
| Msa0011870 | Msa1340440 | 0.816338 | 5.822421e-52 | -8.615850e-47 |
| Msa0011870 | Msa1388720 | -0.801400 | 9.168838e-49 | -8.615850e-47 |
| Msa0011870 | Msa1398140 | 0.807402 | 5.143226e-50 | -8.615850e-47 |
| Msa0011870 | Msa1407810 | 0.805561 | 1.257661e-49 | -8.615850e-47 |
| Msa0011870 | Msa1433360 | 0.811871 | 5.636225e-51 | -8.615850e-47 |
| Msa0011870 | Msa1436400 | 0.803275 | 3.768024e-49 | -8.615850e-47 |
| Msa0011870 | Msa1437780 | 0.807119 | 5.904627e-50 | -8.615850e-47 |
| Msa0011870 | Msa1439250 | 0.800016 | 1.756228e-48 | -8.615850e-47 |
| Msa0011870 | Msa1455200 | 0.807773 | 4.291050e-50 | -8.615850e-47 |
| Msa0011870 | Msa1455360 | 0.811223 | 7.793691e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011870 | MtrunA17_Chr1g0160381 | 94.118 | 153 | 9 | 0 | 1 | 153 | 5 | 157 | 4.91e-103 | 291 |
| Msa0011870 | MtrunA17_Chr1g0160371 | 87.582 | 153 | 19 | 0 | 1 | 153 | 1 | 153 | 1.13e-97 | 278 |
| Msa0011870 | MtrunA17_Chr1g0160391 | 58.710 | 155 | 59 | 2 | 1 | 150 | 1 | 155 | 1.92e-61 | 186 |
| Msa0011870 | MtrunA17_Chr1g0160351 | 79.348 | 92 | 19 | 0 | 62 | 153 | 3 | 94 | 5.81e-49 | 152 |
| Msa0011870 | MtrunA17_Chr8g0355721 | 41.176 | 153 | 87 | 2 | 1 | 152 | 1 | 151 | 8.33e-39 | 129 |
| Msa0011870 | MtrunA17_Chr8g0355781 | 40.523 | 153 | 88 | 2 | 1 | 152 | 1 | 151 | 1.26e-38 | 128 |
| Msa0011870 | MtrunA17_Chr8g0355661 | 39.869 | 153 | 88 | 3 | 1 | 152 | 1 | 150 | 3.52e-37 | 125 |
| Msa0011870 | MtrunA17_Chr8g0355811 | 39.216 | 153 | 89 | 3 | 1 | 152 | 1 | 150 | 5.32e-37 | 124 |
| Msa0011870 | MtrunA17_Chr8g0355771 | 39.216 | 153 | 89 | 3 | 1 | 152 | 1 | 150 | 1.02e-36 | 124 |
| Msa0011870 | MtrunA17_Chr8g0355821 | 38.562 | 153 | 90 | 3 | 1 | 152 | 1 | 150 | 1.68e-36 | 123 |
| Msa0011870 | MtrunA17_Chr8g0355761 | 37.255 | 153 | 93 | 2 | 1 | 152 | 1 | 151 | 1.79e-36 | 123 |
| Msa0011870 | MtrunA17_Chr8g0355741 | 38.312 | 154 | 92 | 2 | 1 | 153 | 1 | 152 | 6.76e-36 | 121 |
| Msa0011870 | MtrunA17_Chr8g0355641 | 39.610 | 154 | 90 | 2 | 1 | 153 | 1 | 152 | 8.24e-35 | 119 |
| Msa0011870 | MtrunA17_Chr8g0355791 | 37.908 | 153 | 91 | 3 | 1 | 152 | 1 | 150 | 9.53e-35 | 118 |
| Msa0011870 | MtrunA17_Chr8g0355801 | 37.255 | 153 | 92 | 3 | 1 | 152 | 1 | 150 | 1.05e-34 | 118 |
| Msa0011870 | MtrunA17_Chr8g0339261 | 35.897 | 156 | 94 | 4 | 1 | 153 | 1 | 153 | 1.92e-28 | 102 |
| Msa0011870 | MtrunA17_Chr1g0160801 | 37.013 | 154 | 87 | 5 | 1 | 152 | 1 | 146 | 2.68e-27 | 99.4 |
| Msa0011870 | MtrunA17_Chr5g0413971 | 28.758 | 153 | 102 | 5 | 1 | 150 | 3 | 151 | 1.18e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011870 | AT1G70890.1 | 37.662 | 154 | 92 | 3 | 2 | 153 | 6 | 157 | 2.10e-32 | 113 |
| Msa0011870 | AT5G28010.1 | 38.961 | 154 | 90 | 3 | 2 | 153 | 14 | 165 | 1.05e-31 | 111 |
| Msa0011870 | AT5G28010.2 | 38.961 | 154 | 90 | 3 | 2 | 153 | 14 | 165 | 1.05e-31 | 111 |
| Msa0011870 | AT1G70840.1 | 35.065 | 154 | 96 | 3 | 2 | 153 | 19 | 170 | 5.48e-31 | 110 |
| Msa0011870 | AT1G70830.5 | 37.013 | 154 | 93 | 3 | 2 | 153 | 21 | 172 | 1.65e-30 | 108 |
| Msa0011870 | AT1G70830.3 | 37.013 | 154 | 93 | 3 | 2 | 153 | 21 | 172 | 3.13e-30 | 108 |
| Msa0011870 | AT1G70830.2 | 37.013 | 154 | 93 | 3 | 2 | 153 | 21 | 172 | 1.77e-29 | 108 |
| Msa0011870 | AT1G70830.1 | 37.013 | 154 | 93 | 3 | 2 | 153 | 21 | 172 | 6.61e-29 | 108 |
| Msa0011870 | AT1G70830.1 | 36.364 | 154 | 94 | 3 | 2 | 153 | 183 | 334 | 1.52e-27 | 105 |
| Msa0011870 | AT1G70830.4 | 36.364 | 154 | 94 | 3 | 2 | 153 | 136 | 287 | 4.53e-28 | 105 |
| Msa0011870 | AT1G70830.4 | 36.458 | 96 | 58 | 2 | 59 | 153 | 32 | 125 | 4.22e-14 | 68.2 |
| Msa0011870 | AT1G70850.2 | 34.211 | 152 | 96 | 3 | 2 | 151 | 8 | 157 | 5.98e-27 | 101 |
| Msa0011870 | AT5G28000.1 | 33.766 | 154 | 98 | 3 | 2 | 153 | 12 | 163 | 2.63e-26 | 97.8 |
| Msa0011870 | AT1G70850.3 | 34.211 | 152 | 96 | 3 | 2 | 151 | 8 | 157 | 2.79e-26 | 101 |
| Msa0011870 | AT1G70850.3 | 35.664 | 143 | 88 | 3 | 13 | 153 | 175 | 315 | 2.28e-25 | 99.0 |
| Msa0011870 | AT1G70850.1 | 34.211 | 152 | 96 | 3 | 2 | 151 | 8 | 157 | 2.79e-26 | 101 |
| Msa0011870 | AT1G70850.1 | 35.664 | 143 | 88 | 3 | 13 | 153 | 175 | 315 | 2.28e-25 | 99.0 |
| Msa0011870 | AT1G70880.1 | 32.468 | 154 | 100 | 3 | 2 | 153 | 7 | 158 | 2.30e-25 | 95.1 |
| Msa0011870 | AT1G23130.1 | 27.451 | 153 | 108 | 2 | 2 | 153 | 9 | 159 | 7.09e-25 | 94.0 |
| Msa0011870 | AT1G35260.1 | 31.293 | 147 | 96 | 3 | 7 | 151 | 6 | 149 | 1.50e-23 | 90.5 |
| Msa0011870 | AT1G14930.1 | 35.294 | 153 | 95 | 3 | 1 | 152 | 1 | 150 | 3.71e-23 | 89.4 |
| Msa0011870 | AT1G70870.1 | 36.842 | 152 | 82 | 5 | 1 | 152 | 1 | 138 | 6.64e-23 | 88.2 |
| Msa0011870 | AT1G23120.1 | 31.373 | 153 | 99 | 3 | 1 | 153 | 1 | 147 | 2.92e-21 | 84.3 |
| Msa0011870 | AT1G23120.2 | 31.373 | 153 | 99 | 3 | 1 | 153 | 51 | 197 | 8.65e-21 | 84.3 |
| Msa0011870 | AT1G14950.1 | 30.065 | 153 | 103 | 3 | 1 | 152 | 1 | 150 | 1.33e-18 | 77.8 |
| Msa0011870 | AT4G14060.1 | 30.065 | 153 | 103 | 3 | 1 | 152 | 1 | 150 | 3.00e-18 | 76.6 |
| Msa0011870 | AT1G35310.1 | 30.282 | 142 | 95 | 3 | 13 | 153 | 12 | 150 | 3.10e-18 | 76.6 |
| Msa0011870 | AT1G24020.1 | 36.420 | 162 | 84 | 7 | 1 | 153 | 1 | 152 | 6.39e-18 | 75.9 |
| Msa0011870 | AT1G24020.2 | 36.420 | 162 | 84 | 7 | 1 | 153 | 1 | 152 | 6.39e-18 | 75.9 |
| Msa0011870 | AT2G01520.1 | 29.412 | 153 | 104 | 3 | 1 | 152 | 1 | 150 | 2.68e-17 | 74.3 |
| Msa0011870 | AT1G14940.1 | 29.605 | 152 | 103 | 3 | 1 | 151 | 1 | 149 | 1.12e-16 | 72.8 |
| Msa0011870 | AT1G30990.1 | 27.632 | 152 | 105 | 3 | 1 | 151 | 1 | 148 | 8.21e-16 | 70.5 |
| Msa0011870 | AT2G01530.1 | 29.412 | 153 | 104 | 3 | 1 | 152 | 1 | 150 | 4.78e-15 | 68.2 |
| Msa0011870 | AT1G14960.1 | 28.105 | 153 | 106 | 3 | 1 | 152 | 1 | 150 | 7.24e-15 | 67.8 |
| Msa0011870 | AT3G26460.1 | 28.105 | 153 | 107 | 2 | 1 | 152 | 1 | 151 | 2.67e-13 | 63.9 |
| Msa0011870 | AT3G26450.1 | 28.571 | 154 | 105 | 4 | 1 | 152 | 1 | 151 | 4.61e-13 | 63.2 |
| Msa0011870 | AT4G23670.1 | 29.412 | 153 | 104 | 3 | 1 | 152 | 1 | 150 | 7.83e-13 | 62.4 |
Find 31 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTACTTCTGTGGTGATATT+AGG | 0.304651 | 1_1:-17813072 | None:intergenic |
| TGAGAGTTACAAGAGTTTAA+AGG | 0.313337 | 1_1:+17813738 | Msa0011870:CDS |
| ATGGTGGTGGGATTGTTAAA+TGG | 0.324878 | 1_1:+17813788 | Msa0011870:CDS |
| GAAGGTGACTGGGAAAATAT+TGG | 0.418929 | 1_1:+17813111 | Msa0011870:CDS |
| AAGCTAAAGGAGGAAATTAC+AGG | 0.424947 | 1_1:+17813826 | Msa0011870:CDS |
| GCAAGGTCCAAGTATGAATC+AGG | 0.441032 | 1_1:-17813856 | None:intergenic |
| TGGTGGTGGGATTGTTAAAT+GGG | 0.470252 | 1_1:+17813789 | Msa0011870:CDS |
| ATACTTGGACCTTGCTGTGA+AGG | 0.503938 | 1_1:+17813864 | Msa0011870:CDS |
| TGTATCTCCTGATTCATACT+TGG | 0.511390 | 1_1:+17813849 | Msa0011870:CDS |
| CATGGCTTTAAGTGGGAAAG+TGG | 0.512659 | 1_1:+17812978 | None:intergenic |
| GTAGAGTGCATGAAGGTGAC+TGG | 0.523294 | 1_1:+17813100 | Msa0011870:CDS |
| AGAAGAGACATGGCTTTAAG+TGG | 0.526395 | 1_1:+17812970 | None:intergenic |
| ATTCATAAAGAACATGGTGG+TGG | 0.537340 | 1_1:+17813775 | Msa0011870:CDS |
| ATATTGGTTCTATCAAGCAC+TGG | 0.538736 | 1_1:+17813127 | Msa0011870:CDS |
| TTCATAAAGAACATGGTGGT+GGG | 0.570285 | 1_1:+17813776 | Msa0011870:CDS |
| AATATCACCACAGAAGTACA+TGG | 0.570466 | 1_1:+17813075 | Msa0011870:CDS |
| TATTGGTTCTATCAAGCACT+GGG | 0.594586 | 1_1:+17813128 | Msa0011870:CDS |
| TCTACCTCCATGTACTTCTG+TGG | 0.594643 | 1_1:-17813082 | None:intergenic |
| TAGAGTGCATGAAGGTGACT+GGG | 0.605256 | 1_1:+17813101 | Msa0011870:CDS |
| CAAGTGATTCATAAAGAACA+TGG | 0.605539 | 1_1:+17813769 | Msa0011870:CDS |
| TATTGATTCTCATCTTGTCA+AGG | 0.605627 | 1_1:+17813897 | Msa0011870:CDS |
| GGCTTTAAGTGGGAAAGTGG+AGG | 0.606303 | 1_1:+17812981 | Msa0011870:CDS |
| ATACGAATATGAGAAGCTAA+AGG | 0.610623 | 1_1:+17813813 | Msa0011870:CDS |
| AAGCACTGGGAATTTACAGT+AGG | 0.622307 | 1_1:+17813141 | Msa0011870:CDS |
| GAAGAGACATGGCTTTAAGT+GGG | 0.623024 | 1_1:+17812971 | None:intergenic |
| CGAATATGAGAAGCTAAAGG+AGG | 0.640547 | 1_1:+17813816 | Msa0011870:CDS |
| CATGGAGGTAGAGTGCATGA+AGG | 0.659264 | 1_1:+17813093 | Msa0011870:CDS |
| GAAGTAGAGATTCAAGCACC+TGG | 0.664321 | 1_1:+17813006 | Msa0011870:CDS |
| ATATTATAGAACTTAGCACC+AGG | 0.680852 | 1_1:-17813024 | None:intergenic |
| GTGATTCATAAAGAACATGG+TGG | 0.735641 | 1_1:+17813772 | Msa0011870:CDS |
| ATCACCACAGAAGTACATGG+AGG | 0.776492 | 1_1:+17813078 | Msa0011870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTTGCTTAAAAAAAAAA+AGG | + | chr1_1:17813512-17813531 | Msa0011870:intron | 15.0% |
| !!! | TAAATATGTTTTGTTTACAT+TGG | + | chr1_1:17813555-17813574 | Msa0011870:intron | 15.0% |
| !! | TCATTTGCTTAAAAAAAAAA+AGG | + | chr1_1:17813512-17813531 | Msa0011870:intron | 15.0% |
| !!! | TAAATATGTTTTGTTTACAT+TGG | + | chr1_1:17813555-17813574 | Msa0011870:intron | 15.0% |
| !! | TAGTAAAACTATGAAACATA+AGG | - | chr1_1:17813177-17813196 | None:intergenic | 20.0% |
| !! | AGTGTTTATAAATGACAATT+TGG | - | chr1_1:17813366-17813385 | None:intergenic | 20.0% |
| !!! | TTATTTATTTTCCCTAATCA+TGG | + | chr1_1:17813592-17813611 | Msa0011870:intron | 20.0% |
| !!! | ATCATATATAGCATTTTTGA+TGG | + | chr1_1:17813706-17813725 | Msa0011870:CDS | 20.0% |
| !! | TAGTAAAACTATGAAACATA+AGG | - | chr1_1:17813177-17813196 | None:intergenic | 20.0% |
| !! | AGTGTTTATAAATGACAATT+TGG | - | chr1_1:17813366-17813385 | None:intergenic | 20.0% |
| !!! | TTATTTATTTTCCCTAATCA+TGG | + | chr1_1:17813592-17813611 | Msa0011870:intron | 20.0% |
| !!! | ATCATATATAGCATTTTTGA+TGG | + | chr1_1:17813706-17813725 | Msa0011870:CDS | 20.0% |
| ! | GAATTTACAGTAGGTAATTA+AGG | + | chr1_1:17813150-17813169 | Msa0011870:intron | 25.0% |
| !! | ACTATTTTATTGCTCATGAA+AGG | + | chr1_1:17813193-17813212 | Msa0011870:intron | 25.0% |
| ! | TAAATCAAGTTCCATGATTA+GGG | - | chr1_1:17813606-17813625 | None:intergenic | 25.0% |
| ! | TTAAATCAAGTTCCATGATT+AGG | - | chr1_1:17813607-17813626 | None:intergenic | 25.0% |
| ! | GAATTTACAGTAGGTAATTA+AGG | + | chr1_1:17813150-17813169 | Msa0011870:intron | 25.0% |
| !! | ACTATTTTATTGCTCATGAA+AGG | + | chr1_1:17813193-17813212 | Msa0011870:intron | 25.0% |
| ! | TAAATCAAGTTCCATGATTA+GGG | - | chr1_1:17813606-17813625 | None:intergenic | 25.0% |
| ! | TTAAATCAAGTTCCATGATT+AGG | - | chr1_1:17813607-17813626 | None:intergenic | 25.0% |
| ATATTATAGAACTTAGCACC+AGG | - | chr1_1:17813027-17813046 | None:intergenic | 30.0% | |
| ! | TAACATCAACAAAAGAGTGT+TGG | - | chr1_1:17813280-17813299 | None:intergenic | 30.0% |
| !! | TTTGTTTTCTTCCTTCTGTA+GGG | - | chr1_1:17813642-17813661 | None:intergenic | 30.0% |
| TGAGAGTTACAAGAGTTTAA+AGG | + | chr1_1:17813738-17813757 | Msa0011870:CDS | 30.0% | |
| CAAGTGATTCATAAAGAACA+TGG | + | chr1_1:17813769-17813788 | Msa0011870:CDS | 30.0% | |
| ATACGAATATGAGAAGCTAA+AGG | + | chr1_1:17813813-17813832 | Msa0011870:CDS | 30.0% | |
| !! | TATTGATTCTCATCTTGTCA+AGG | + | chr1_1:17813897-17813916 | Msa0011870:CDS | 30.0% |
| ATATTATAGAACTTAGCACC+AGG | - | chr1_1:17813027-17813046 | None:intergenic | 30.0% | |
| ! | TAACATCAACAAAAGAGTGT+TGG | - | chr1_1:17813280-17813299 | None:intergenic | 30.0% |
| !! | TTTGTTTTCTTCCTTCTGTA+GGG | - | chr1_1:17813642-17813661 | None:intergenic | 30.0% |
| TGAGAGTTACAAGAGTTTAA+AGG | + | chr1_1:17813738-17813757 | Msa0011870:CDS | 30.0% | |
| CAAGTGATTCATAAAGAACA+TGG | + | chr1_1:17813769-17813788 | Msa0011870:CDS | 30.0% | |
| ATACGAATATGAGAAGCTAA+AGG | + | chr1_1:17813813-17813832 | Msa0011870:CDS | 30.0% | |
| !! | TATTGATTCTCATCTTGTCA+AGG | + | chr1_1:17813897-17813916 | Msa0011870:CDS | 30.0% |
| TGTACTTCTGTGGTGATATT+AGG | - | chr1_1:17813075-17813094 | None:intergenic | 35.0% | |
| ! | AATATCACCACAGAAGTACA+TGG | + | chr1_1:17813075-17813094 | Msa0011870:CDS | 35.0% |
| !! | ATATTGGTTCTATCAAGCAC+TGG | + | chr1_1:17813127-17813146 | Msa0011870:CDS | 35.0% |
| !! | TATTGGTTCTATCAAGCACT+GGG | + | chr1_1:17813128-17813147 | Msa0011870:CDS | 35.0% |
| !! | ATCAACAAAAGAGTGTTGGA+AGG | - | chr1_1:17813276-17813295 | None:intergenic | 35.0% |
| !!! | CTTTGTTTTCTTCCTTCTGT+AGG | - | chr1_1:17813643-17813662 | None:intergenic | 35.0% |
| ! | TAGCATTTTTGATGGAGAAG+TGG | + | chr1_1:17813714-17813733 | Msa0011870:CDS | 35.0% |
| ! | AGCATTTTTGATGGAGAAGT+GGG | + | chr1_1:17813715-17813734 | Msa0011870:CDS | 35.0% |
| GTGATTCATAAAGAACATGG+TGG | + | chr1_1:17813772-17813791 | Msa0011870:CDS | 35.0% | |
| ATTCATAAAGAACATGGTGG+TGG | + | chr1_1:17813775-17813794 | Msa0011870:CDS | 35.0% | |
| TTCATAAAGAACATGGTGGT+GGG | + | chr1_1:17813776-17813795 | Msa0011870:CDS | 35.0% | |
| AAGCTAAAGGAGGAAATTAC+AGG | + | chr1_1:17813826-17813845 | Msa0011870:CDS | 35.0% | |
| TGTATCTCCTGATTCATACT+TGG | + | chr1_1:17813849-17813868 | Msa0011870:CDS | 35.0% | |
| TGTACTTCTGTGGTGATATT+AGG | - | chr1_1:17813075-17813094 | None:intergenic | 35.0% | |
| ! | AATATCACCACAGAAGTACA+TGG | + | chr1_1:17813075-17813094 | Msa0011870:CDS | 35.0% |
| !! | ATATTGGTTCTATCAAGCAC+TGG | + | chr1_1:17813127-17813146 | Msa0011870:CDS | 35.0% |
| !! | TATTGGTTCTATCAAGCACT+GGG | + | chr1_1:17813128-17813147 | Msa0011870:CDS | 35.0% |
| !! | ATCAACAAAAGAGTGTTGGA+AGG | - | chr1_1:17813276-17813295 | None:intergenic | 35.0% |
| !!! | CTTTGTTTTCTTCCTTCTGT+AGG | - | chr1_1:17813643-17813662 | None:intergenic | 35.0% |
| ! | TAGCATTTTTGATGGAGAAG+TGG | + | chr1_1:17813714-17813733 | Msa0011870:CDS | 35.0% |
| ! | AGCATTTTTGATGGAGAAGT+GGG | + | chr1_1:17813715-17813734 | Msa0011870:CDS | 35.0% |
| GTGATTCATAAAGAACATGG+TGG | + | chr1_1:17813772-17813791 | Msa0011870:CDS | 35.0% | |
| ATTCATAAAGAACATGGTGG+TGG | + | chr1_1:17813775-17813794 | Msa0011870:CDS | 35.0% | |
| TTCATAAAGAACATGGTGGT+GGG | + | chr1_1:17813776-17813795 | Msa0011870:CDS | 35.0% | |
| AAGCTAAAGGAGGAAATTAC+AGG | + | chr1_1:17813826-17813845 | Msa0011870:CDS | 35.0% | |
| TGTATCTCCTGATTCATACT+TGG | + | chr1_1:17813849-17813868 | Msa0011870:CDS | 35.0% | |
| GAAGGTGACTGGGAAAATAT+TGG | + | chr1_1:17813111-17813130 | Msa0011870:CDS | 40.0% | |
| !! | AAGCACTGGGAATTTACAGT+AGG | + | chr1_1:17813141-17813160 | Msa0011870:CDS | 40.0% |
| !! | ACAAAAGAGTGTTGGAAGGA+GGG | - | chr1_1:17813272-17813291 | None:intergenic | 40.0% |
| !! | AACAAAAGAGTGTTGGAAGG+AGG | - | chr1_1:17813273-17813292 | None:intergenic | 40.0% |
| TACTTGTGAAACCCTACAGA+AGG | + | chr1_1:17813628-17813647 | Msa0011870:intron | 40.0% | |
| !! | ATGGTGGTGGGATTGTTAAA+TGG | + | chr1_1:17813788-17813807 | Msa0011870:CDS | 40.0% |
| !! | TGGTGGTGGGATTGTTAAAT+GGG | + | chr1_1:17813789-17813808 | Msa0011870:CDS | 40.0% |
| CGAATATGAGAAGCTAAAGG+AGG | + | chr1_1:17813816-17813835 | Msa0011870:CDS | 40.0% | |
| GAAGGTGACTGGGAAAATAT+TGG | + | chr1_1:17813111-17813130 | Msa0011870:CDS | 40.0% | |
| !! | AAGCACTGGGAATTTACAGT+AGG | + | chr1_1:17813141-17813160 | Msa0011870:CDS | 40.0% |
| !! | ACAAAAGAGTGTTGGAAGGA+GGG | - | chr1_1:17813272-17813291 | None:intergenic | 40.0% |
| !! | AACAAAAGAGTGTTGGAAGG+AGG | - | chr1_1:17813273-17813292 | None:intergenic | 40.0% |
| TACTTGTGAAACCCTACAGA+AGG | + | chr1_1:17813628-17813647 | Msa0011870:intron | 40.0% | |
| !! | ATGGTGGTGGGATTGTTAAA+TGG | + | chr1_1:17813788-17813807 | Msa0011870:CDS | 40.0% |
| !! | TGGTGGTGGGATTGTTAAAT+GGG | + | chr1_1:17813789-17813808 | Msa0011870:CDS | 40.0% |
| CGAATATGAGAAGCTAAAGG+AGG | + | chr1_1:17813816-17813835 | Msa0011870:CDS | 40.0% | |
| GAAGTAGAGATTCAAGCACC+TGG | + | chr1_1:17813006-17813025 | Msa0011870:CDS | 45.0% | |
| ! | ATCACCACAGAAGTACATGG+AGG | + | chr1_1:17813078-17813097 | Msa0011870:CDS | 45.0% |
| TCTACCTCCATGTACTTCTG+TGG | - | chr1_1:17813085-17813104 | None:intergenic | 45.0% | |
| TAGAGTGCATGAAGGTGACT+GGG | + | chr1_1:17813101-17813120 | Msa0011870:CDS | 45.0% | |
| GCAAGGTCCAAGTATGAATC+AGG | - | chr1_1:17813859-17813878 | None:intergenic | 45.0% | |
| ! | ATACTTGGACCTTGCTGTGA+AGG | + | chr1_1:17813864-17813883 | Msa0011870:CDS | 45.0% |
| ! | CTTTTGTGACCTTCACAGCA+AGG | - | chr1_1:17813876-17813895 | None:intergenic | 45.0% |
| GAAGTAGAGATTCAAGCACC+TGG | + | chr1_1:17813006-17813025 | Msa0011870:CDS | 45.0% | |
| ! | ATCACCACAGAAGTACATGG+AGG | + | chr1_1:17813078-17813097 | Msa0011870:CDS | 45.0% |
| TCTACCTCCATGTACTTCTG+TGG | - | chr1_1:17813085-17813104 | None:intergenic | 45.0% | |
| TAGAGTGCATGAAGGTGACT+GGG | + | chr1_1:17813101-17813120 | Msa0011870:CDS | 45.0% | |
| GCAAGGTCCAAGTATGAATC+AGG | - | chr1_1:17813859-17813878 | None:intergenic | 45.0% | |
| ! | ATACTTGGACCTTGCTGTGA+AGG | + | chr1_1:17813864-17813883 | Msa0011870:CDS | 45.0% |
| ! | CTTTTGTGACCTTCACAGCA+AGG | - | chr1_1:17813876-17813895 | None:intergenic | 45.0% |
| !! | GGCTTTAAGTGGGAAAGTGG+AGG | + | chr1_1:17812981-17813000 | Msa0011870:CDS | 50.0% |
| CATGGAGGTAGAGTGCATGA+AGG | + | chr1_1:17813093-17813112 | Msa0011870:CDS | 50.0% | |
| GTAGAGTGCATGAAGGTGAC+TGG | + | chr1_1:17813100-17813119 | Msa0011870:CDS | 50.0% | |
| !! | GGCTTTAAGTGGGAAAGTGG+AGG | + | chr1_1:17812981-17813000 | Msa0011870:CDS | 50.0% |
| CATGGAGGTAGAGTGCATGA+AGG | + | chr1_1:17813093-17813112 | Msa0011870:CDS | 50.0% | |
| GTAGAGTGCATGAAGGTGAC+TGG | + | chr1_1:17813100-17813119 | Msa0011870:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 17812979 | 17813924 | 17812979 | ID=Msa0011870;Name=Msa0011870 |
| chr1_1 | mRNA | 17812979 | 17813924 | 17812979 | ID=Msa0011870-mRNA-1;Parent=Msa0011870;Name=Msa0011870-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0|0|1|1|1|2|0|153 |
| chr1_1 | exon | 17812979 | 17813162 | 17812979 | ID=Msa0011870-mRNA-1:exon:6516;Parent=Msa0011870-mRNA-1 |
| chr1_1 | exon | 17813647 | 17813924 | 17813647 | ID=Msa0011870-mRNA-1:exon:6517;Parent=Msa0011870-mRNA-1 |
| chr1_1 | CDS | 17812979 | 17813162 | 17812979 | ID=Msa0011870-mRNA-1:cds;Parent=Msa0011870-mRNA-1 |
| chr1_1 | CDS | 17813647 | 17813924 | 17813647 | ID=Msa0011870-mRNA-1:cds;Parent=Msa0011870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
