AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0149900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0149900 MtrunA17_Chr1g0146311 96.891 386 12 0 14 399 171 556 0.0 781
Msa0149900 MtrunA17_Chr3g0140511 66.321 386 98 6 15 397 170 526 7.00e-172 491
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0149900 AT2G25740.2 56.555 389 158 4 14 397 98 480 3.75e-147 426
Msa0149900 AT2G25740.1 56.555 389 158 4 14 397 163 545 4.21e-146 426

Find 111 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTCACTTTCCTCGTTTA+AGG 0.119107 1_4:+10921335 None:intergenic
AACTGAAACCTAAGTCATTT+TGG 0.130038 1_4:-10918001 Msa0149900:CDS
TACAAAATATAGTTGGTTTC+CGG 0.206516 1_4:-10918660 Msa0149900:CDS
ATCTACAAGGCAGGAGCTTT+TGG 0.232171 1_4:-10919419 Msa0149900:CDS
CCTTCAAAGTATTCTGTTGA+TGG 0.250991 1_4:-10921366 Msa0149900:CDS
CCATCAGAGAAGGGCTTAAT+TGG 0.255033 1_4:-10921062 Msa0149900:CDS
TTATTTGGAGGTGTTATATT+TGG 0.276236 1_4:-10917682 Msa0149900:three_prime_UTR
TGGGATGTTTCTTAGCCTTA+TGG 0.277487 1_4:-10921495 Msa0149900:intron
GTTGCAAGGAAGATTAATTA+AGG 0.284314 1_4:+10921404 None:intergenic
TGGGTTTATCCATGGTTATT+TGG 0.287391 1_4:-10917697 Msa0149900:three_prime_UTR
ATAGGGAGCTGTTCCTCTTC+TGG 0.290687 1_4:-10921096 Msa0149900:CDS
GCAAATGGATTAGCTCTAAC+TGG 0.318248 1_4:-10918692 Msa0149900:CDS
TGGTCCCCATGATTGGAATA+TGG 0.321879 1_4:+10917497 None:intergenic
TTCATGCTGCAATATGAATA+TGG 0.324531 1_4:+10917898 None:intergenic
CGAACTCCAAGGGATGCTTT+TGG 0.340355 1_4:-10921438 Msa0149900:CDS
TATTTGGAGGTGTTATATTT+GGG 0.344945 1_4:-10917681 Msa0149900:three_prime_UTR
ACAAAATATAGTTGGTTTCC+GGG 0.353288 1_4:-10918659 Msa0149900:CDS
AGGTGTTATATTTGGGTGTT+GGG 0.362242 1_4:-10917674 Msa0149900:three_prime_UTR
CTCCTATTTGCTTGCACAAA+GGG 0.372296 1_4:-10920959 Msa0149900:CDS
AAGAGCATTCTTGCCTGGTT+GGG 0.374410 1_4:-10920998 Msa0149900:CDS
GAAAATCTGGATTCTAGAAT+AGG 0.375236 1_4:-10921114 Msa0149900:CDS
TTGCAGTACTAGTGAACATT+TGG 0.386437 1_4:-10917925 Msa0149900:three_prime_UTR
GGTGTCTGGTGTATTTAGAT+TGG 0.391654 1_4:+10921173 None:intergenic
TGCCTTGTAGATTCAGAAAC+AGG 0.392651 1_4:+10919430 None:intergenic
GAGGTGTTATATTTGGGTGT+TGG 0.394268 1_4:-10917675 Msa0149900:three_prime_UTR
GCATTTACATACGCACCAAC+AGG 0.399570 1_4:+10918752 None:intergenic
CGTATACCCCAAAATGACTT+AGG 0.415553 1_4:+10917993 None:intergenic
TGATTCATCATATTCAAAAC+TGG 0.431365 1_4:+10921248 None:intergenic
AAAATCTGGATTCTAGAATA+GGG 0.431861 1_4:-10921113 Msa0149900:CDS
ACGACTTTGTACAAGGCAAA+TGG 0.435116 1_4:-10918707 Msa0149900:CDS
CAGCACTTACAAAATATAGT+TGG 0.442633 1_4:-10918667 Msa0149900:CDS
TACAAATGTAAGGACTAGAT+TGG 0.446252 1_4:-10917717 Msa0149900:three_prime_UTR
AGGAATGGTGTTAAGGTGTC+TGG 0.450188 1_4:+10921159 None:intergenic
CATTTGTATGCTGGTTTCAA+CGG 0.454163 1_4:+10917732 None:intergenic
TTCACTCCTATTAAGAAGGC+AGG 0.455754 1_4:-10917592 Msa0149900:three_prime_UTR
AGCCCTTTGTGCAAGCAAAT+AGG 0.456513 1_4:+10920957 None:intergenic
TAGTCCTTACATTTGTATGC+TGG 0.458787 1_4:+10917723 None:intergenic
CCATCAACAGAATACTTTGA+AGG 0.459522 1_4:+10921366 None:intergenic
TTGCAAGGAAGATTAATTAA+GGG 0.461072 1_4:+10921405 None:intergenic
TTCTGCAATTGTAATTGAGT+TGG 0.462837 1_4:-10917771 Msa0149900:three_prime_UTR
GTCAGGTAGGAATGGTGTTA+AGG 0.463184 1_4:+10921152 None:intergenic
GTTTATCCATGGTTATTTGG+AGG 0.464111 1_4:-10917694 Msa0149900:three_prime_UTR
ATAGAAAATGATAAAACATC+AGG 0.465475 1_4:+10919466 None:intergenic
AAAGTATTCTGTTGATGGAC+AGG 0.466460 1_4:-10921361 Msa0149900:CDS
TTGCTTGCACAAAGGGCTGC+AGG 0.469589 1_4:-10920952 Msa0149900:intron
CAAGAGCATTCTTGCCTGGT+TGG 0.476744 1_4:-10920999 Msa0149900:CDS
CCAATTAAGCCCTTCTCTGA+TGG 0.476760 1_4:+10921062 None:intergenic
TGCCACATGTGAAACCCATA+TGG 0.487704 1_4:-10918051 Msa0149900:CDS
ATTTCAAGAGCATTCTTGCC+TGG 0.489166 1_4:-10921003 Msa0149900:CDS
ACAAATGTAAGGACTAGATT+GGG 0.493278 1_4:-10917716 Msa0149900:three_prime_UTR
GACTAGATTGGGTTTATCCA+TGG 0.495558 1_4:-10917705 Msa0149900:three_prime_UTR
GAAATTCTATGTGAGGAGTA+GGG 0.499323 1_4:+10921021 None:intergenic
TGAAATTCTATGTGAGGAGT+AGG 0.500143 1_4:+10921020 None:intergenic
TGGAGAGATCCAAATTATTG+AGG 0.501224 1_4:-10921475 Msa0149900:CDS
TTAACAAGAGCATCCATGCT+TGG 0.501936 1_4:+10919493 None:intergenic
GAAACCAGCATACAAATGTA+AGG 0.503260 1_4:-10917727 Msa0149900:three_prime_UTR
TTACTTCTGGCAGGTATGCA+TGG 0.505297 1_4:-10918088 Msa0149900:intron
AACTTACAGATTCGACAGTA+CGG 0.510427 1_4:-10921758 Msa0149900:CDS
AATCGTTGGTGCACCAAGCA+TGG 0.515353 1_4:-10919506 Msa0149900:CDS
ATAATTTGGATCTCTCCATA+AGG 0.522393 1_4:+10921480 None:intergenic
GGTGCGTATGTAAATGCAAC+TGG 0.523461 1_4:-10918746 Msa0149900:CDS
ATTCACATATGAGTCAGATC+AGG 0.524093 1_4:-10921205 Msa0149900:CDS
TGGAACGAATGAGTGATTGA+TGG 0.525094 1_4:+10921268 None:intergenic
CCCCATATGGGTTTCACATG+TGG 0.529870 1_4:+10918049 None:intergenic
GCTTTCGCTTAAGACGGTGT+TGG 0.556837 1_4:-10921688 Msa0149900:CDS
TAATTGAGGATTACAAACAT+TGG 0.558098 1_4:+10917627 None:intergenic
AAACAATCCTCCATCAGAGA+AGG 0.563310 1_4:-10921072 Msa0149900:CDS
TGTTTCTGAATCTACAAGGC+AGG 0.563311 1_4:-10919428 Msa0149900:CDS
AATTCGATGTAAAATCTGCC+AGG 0.564880 1_4:-10919335 Msa0149900:intron
ACTTACAGATTCGACAGTAC+GGG 0.570721 1_4:-10921757 Msa0149900:CDS
CAGTACGGGCGCCTAGAGGA+TGG 0.572399 1_4:-10921743 Msa0149900:CDS
CAAATGGATTAGCTCTAACT+GGG 0.573810 1_4:-10918691 Msa0149900:CDS
TGCAAAGCGGAGTGATATGC+TGG 0.576040 1_4:-10918792 Msa0149900:CDS
CATTCAACGAACCATCCTCT+AGG 0.576324 1_4:+10921732 None:intergenic
AACACACTGGCACGGTTGCA+AGG 0.577040 1_4:+10921390 None:intergenic
AGCATGAATATTGATGATAC+AGG 0.577675 1_4:-10917883 Msa0149900:three_prime_UTR
ACATACCATCGCGAACTCCA+AGG 0.577866 1_4:-10921449 Msa0149900:CDS
GCCACATGTGAAACCCATAT+GGG 0.579463 1_4:-10918050 Msa0149900:CDS
AAATTCTATGTGAGGAGTAG+GGG 0.580319 1_4:+10921022 None:intergenic
GGATCTCATATAGATTGCGT+AGG 0.582958 1_4:-10919387 Msa0149900:CDS
ATGTCTAGTGAAGGCCCTGT+TGG 0.586333 1_4:-10918767 Msa0149900:CDS
GTTCATGATCTGTAGATATG+TGG 0.588117 1_4:-10919534 Msa0149900:intron
ACTCCTATTTGCTTGCACAA+AGG 0.591007 1_4:-10920960 Msa0149900:CDS
CAAAATATAGTTGGTTTCCG+GGG 0.591312 1_4:-10918658 Msa0149900:intron
ATTAAGCCCTTCTCTGATGG+AGG 0.592131 1_4:+10921065 None:intergenic
TACCTGTTTCTGAATCTACA+AGG 0.597932 1_4:-10919432 Msa0149900:CDS
CGGTGTTGGATCGATGTGGA+AGG 0.598035 1_4:-10921674 Msa0149900:CDS
TGAGATAACGACTTTGTACA+AGG 0.599821 1_4:-10918714 Msa0149900:CDS
AACAATCCTCCATCAGAGAA+GGG 0.602387 1_4:-10921071 Msa0149900:CDS
TGCTCTTGAAATTCTATGTG+AGG 0.603043 1_4:+10921014 None:intergenic
TCGTTGAATGTGGTCACTCG+TGG 0.603436 1_4:-10921719 Msa0149900:CDS
AGAGGATGGTTCGTTGAATG+TGG 0.609930 1_4:-10921729 Msa0149900:CDS
CATACCATCGCGAACTCCAA+GGG 0.610151 1_4:-10921448 Msa0149900:CDS
TTGGATCGATGTGGAAGGAG+TGG 0.625144 1_4:-10921669 Msa0149900:intron
GATCTCATATAGATTGCGTA+GGG 0.626453 1_4:-10919386 Msa0149900:CDS
ATAACACCTCCAAATAACCA+TGG 0.630379 1_4:+10917688 None:intergenic
TTGAAGGCAACACACTGGCA+CGG 0.631838 1_4:+10921382 None:intergenic
AACATACGATATACCCAACC+AGG 0.631908 1_4:+10920985 None:intergenic
AACAACGCTTTCGCTTAAGA+CGG 0.633073 1_4:-10921694 Msa0149900:CDS
GCATCCCTTGGAGTTCGCGA+TGG 0.645866 1_4:+10921444 None:intergenic
ATACTTTGAAGGCAACACAC+TGG 0.657192 1_4:+10921377 None:intergenic
CATTTACATACGCACCAACA+GGG 0.660144 1_4:+10918753 None:intergenic
CATGTGAAACCCATATGGGG+TGG 0.666966 1_4:-10918046 Msa0149900:CDS
TCGACAGTACGGGCGCCTAG+AGG 0.677937 1_4:-10921747 Msa0149900:CDS
TGTAGATTATAATTGCAAAG+CGG 0.679418 1_4:-10918805 Msa0149900:intron
TATGATGAATCAGCAAGTAG+CGG 0.686339 1_4:-10921237 Msa0149900:CDS
AAGACGGTGTTGGATCGATG+TGG 0.691734 1_4:-10921678 Msa0149900:CDS
ATGCTGGTGATGTCTAGTGA+AGG 0.693369 1_4:-10918776 Msa0149900:CDS
GATATGTGGAAGCAAATCGT+TGG 0.703389 1_4:-10919520 Msa0149900:CDS
CCACATGTGAAACCCATATG+GGG 0.708560 1_4:-10918049 Msa0149900:CDS
TGGACAGGACTCCTTAAACG+AGG 0.758674 1_4:-10921346 Msa0149900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATATGTTAAATATTTATA+TGG - chr1_4:10918414-10918433 Msa0149900:intron 10.0%
!!! TGTTTTTCTAATATTTATAT+AGG - chr1_4:10920014-10920033 Msa0149900:intron 10.0%
!! ATCTTTATATTTATTGTATA+AGG + chr1_4:10920798-10920817 None:intergenic 10.0%
!! TCTAAATTATTTATTATAAC+TGG + chr1_4:10920824-10920843 None:intergenic 10.0%
!! AATATTTAACATATCAAAAG+TGG + chr1_4:10918410-10918429 None:intergenic 15.0%
!! ATTCATAACTATATATTTGT+TGG - chr1_4:10918622-10918641 Msa0149900:intron 15.0%
!! TTCATAACTATATATTTGTT+GGG - chr1_4:10918623-10918642 Msa0149900:intron 15.0%
!! ACATATAATTAGTATTAGTA+AGG - chr1_4:10918884-10918903 Msa0149900:intron 15.0%
!! ATACTCAAATTAGAAAAATT+TGG - chr1_4:10918923-10918942 Msa0149900:intron 15.0%
!!! TTCTGATTTATCTAATTTTT+AGG - chr1_4:10919087-10919106 Msa0149900:intron 15.0%
!!! TCTGATTTATCTAATTTTTA+GGG - chr1_4:10919088-10919107 Msa0149900:intron 15.0%
!!! TTTTTGGTTTATCTAATTTT+TGG - chr1_4:10919142-10919161 Msa0149900:intron 15.0%
!!! TATCTAATTTTTGGTTTATT+TGG - chr1_4:10919151-10919170 Msa0149900:intron 15.0%
!! TTAAGTAGATATAATATTAG+AGG - chr1_4:10919523-10919542 Msa0149900:intron 15.0%
!! TAAGTAGATATAATATTAGA+GGG - chr1_4:10919524-10919543 Msa0149900:intron 15.0%
!! AATAGTTAATAAGGATAATT+TGG + chr1_4:10920188-10920207 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG - chr1_4:10920187-10920206 Msa0149900:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - chr1_4:10920211-10920230 Msa0149900:intron 15.0%
!! AATATAATATGATATCTTAC+AGG + chr1_4:10920388-10920407 None:intergenic 15.0%
!!! TTATTCTAAAGGAAAGAAAA+AGG + chr1_4:10918575-10918594 None:intergenic 20.0%
!! ACAAATGCTTATTATTCTAA+AGG + chr1_4:10918586-10918605 None:intergenic 20.0%
!!! ATTTATCTAATTTTTAGGGA+AGG - chr1_4:10919092-10919111 Msa0149900:intron 20.0%
!!! TTTATCTAATTTTTAGGGAA+GGG - chr1_4:10919093-10919112 Msa0149900:intron 20.0%
!!! TAGATAAACTGGTTAATTTT+TGG - chr1_4:10919126-10919145 Msa0149900:intron 20.0%
!!! TAATTTTTGGTTTATTTGGT+GGG - chr1_4:10919155-10919174 Msa0149900:intron 20.0%
!! AGAAAATAAGAACAAAACAT+GGG + chr1_4:10919282-10919301 None:intergenic 20.0%
!! AAGAAAATAAGAACAAAACA+TGG + chr1_4:10919283-10919302 None:intergenic 20.0%
!!! ATTTTTTAGGTGAAAAACTA+AGG - chr1_4:10919655-10919674 Msa0149900:intron 20.0%
!! ATAGAAAATGATAAAACATC+AGG + chr1_4:10919839-10919858 None:intergenic 20.0%
!! AAATATTAGAAAAACACTTG+AGG + chr1_4:10920010-10920029 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr1_4:10920197-10920216 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr1_4:10920274-10920293 Msa0149900:intron 20.0%
!! CATTATAAAGAAGATCAAAA+TGG + chr1_4:10920928-10920947 None:intergenic 20.0%
!!! AATATACAATCTTTTACTTC+TGG - chr1_4:10921201-10921220 Msa0149900:CDS 20.0%
!!! AAAAAGCGTAAAAATAATTG+AGG + chr1_4:10921692-10921711 None:intergenic 20.0%
!! TCTCATTTTCTTTCTTTTGT+TGG - chr1_4:10917787-10917806 Msa0149900:three_prime_UTR 25.0%
!! CTCATTTTCTTTCTTTTGTT+GGG - chr1_4:10917788-10917807 Msa0149900:three_prime_UTR 25.0%
!! GTATGTTTTCCTCAATAATT+TGG + chr1_4:10917839-10917858 None:intergenic 25.0%
! TTGCAAGGAAGATTAATTAA+GGG + chr1_4:10917900-10917919 None:intergenic 25.0%
! TGATTCATCATATTCAAAAC+TGG + chr1_4:10918057-10918076 None:intergenic 25.0%
!!! AAAATCTGGATTCTAGAATA+GGG - chr1_4:10918189-10918208 Msa0149900:intron 25.0%
!!! ACTAAGTCTTGTTTTTATAG+AGG - chr1_4:10918468-10918487 Msa0149900:intron 25.0%
!!! TAGTGTTTTGGTACAATAAA+TGG - chr1_4:10918664-10918683 Msa0149900:CDS 25.0%
!!! AGTGTTTTGGTACAATAAAT+GGG - chr1_4:10918665-10918684 Msa0149900:CDS 25.0%
! TTGAGTATATATATTGAACC+TGG + chr1_4:10918911-10918930 None:intergenic 25.0%
!!! CTAATTTTTGGTTTATTTGG+TGG - chr1_4:10919154-10919173 Msa0149900:intron 25.0%
!!! GGTTTTTTCAGAAATAGATT+TGG - chr1_4:10919204-10919223 Msa0149900:intron 25.0%
! AAAATAAGAACAAAACATGG+GGG + chr1_4:10919280-10919299 None:intergenic 25.0%
! GAAAATAAGAACAAAACATG+GGG + chr1_4:10919281-10919300 None:intergenic 25.0%
! CTTAATATGACAATCTTTGT+GGG + chr1_4:10919489-10919508 None:intergenic 25.0%
! ACTTAATATGACAATCTTTG+TGG + chr1_4:10919490-10919509 None:intergenic 25.0%
! AATGATTAAGAGAAAGAGAA+TGG - chr1_4:10920154-10920173 Msa0149900:intron 25.0%
! TGTAGATTATAATTGCAAAG+CGG - chr1_4:10920497-10920516 Msa0149900:intron 25.0%
!! TACAAAATATAGTTGGTTTC+CGG - chr1_4:10920642-10920661 Msa0149900:intron 25.0%
!! TACTATTTCTTGTTATGTGT+TGG - chr1_4:10920712-10920731 Msa0149900:intron 25.0%
!! ACTATTTCTTGTTATGTGTT+GGG - chr1_4:10920713-10920732 Msa0149900:intron 25.0%
! AGCATAAATGAAGGAAAAAT+GGG + chr1_4:10920969-10920988 None:intergenic 25.0%
! AAGCATAAATGAAGGAAAAA+TGG + chr1_4:10920970-10920989 None:intergenic 25.0%
!!! ACTTTTTCCAGTTGTATAAA+AGG + chr1_4:10921462-10921481 None:intergenic 25.0%
!!! TTATTTGGAGGTGTTATATT+TGG - chr1_4:10921620-10921639 Msa0149900:intron 25.0%
!!! TATTTGGAGGTGTTATATTT+GGG - chr1_4:10921621-10921640 Msa0149900:intron 25.0%
!!! TTGGCTTTTGAATGTTTATA+TGG + chr1_4:10921659-10921678 None:intergenic 25.0%
! TAATTGAGGATTACAAACAT+TGG + chr1_4:10921678-10921697 None:intergenic 25.0%
! TCTTCACATGCATTTTATGT+TGG - chr1_4:10917744-10917763 Msa0149900:three_prime_UTR 30.0%
ATAATTTGGATCTCTCCATA+AGG + chr1_4:10917825-10917844 None:intergenic 30.0%
GTTGCAAGGAAGATTAATTA+AGG + chr1_4:10917901-10917920 None:intergenic 30.0%
!! GATTTTCTGCATCTTTTTCA+TGG + chr1_4:10918175-10918194 None:intergenic 30.0%
TGAAAAAGATGCAGAAAATC+TGG - chr1_4:10918175-10918194 Msa0149900:intron 30.0%
!! GAAAATCTGGATTCTAGAAT+AGG - chr1_4:10918188-10918207 Msa0149900:intron 30.0%
!! CTTAATCTAGCTTAGTGTTT+TGG - chr1_4:10918652-10918671 Msa0149900:intron 30.0%
AAGGTCACAAATTCAATTCA+TGG - chr1_4:10918725-10918744 Msa0149900:CDS 30.0%
AATTAGTATTAGTAAGGTCC+AGG - chr1_4:10918890-10918909 Msa0149900:intron 30.0%
CTAATGTAGTAGTGAACAAT+AGG + chr1_4:10918950-10918969 None:intergenic 30.0%
! TGGGATCTTATTCCAAATTT+TGG - chr1_4:10919174-10919193 Msa0149900:intron 30.0%
!!! TATTCCAAATTTTGGTTCTG+AGG - chr1_4:10919182-10919201 Msa0149900:intron 30.0%
!!! ATTCCAAATTTTGGTTCTGA+GGG - chr1_4:10919183-10919202 Msa0149900:intron 30.0%
AAATAAGAACAAAACATGGG+GGG + chr1_4:10919279-10919298 None:intergenic 30.0%
! TGTAGATAATTTTGTGGTTG+TGG - chr1_4:10919327-10919346 Msa0149900:intron 30.0%
ACATGATCGTATACTCAAAT+AGG + chr1_4:10919359-10919378 None:intergenic 30.0%
TTTGAGTATACGATCATGTA+TGG - chr1_4:10919360-10919379 Msa0149900:CDS 30.0%
! ACTAAAAGTGACACTCTTTT+TGG - chr1_4:10919584-10919603 Msa0149900:intron 30.0%
! CTAAAAGTGACACTCTTTTT+GGG - chr1_4:10919585-10919604 Msa0149900:intron 30.0%
TGCGAATGTGACAATTATTA+TGG - chr1_4:10919620-10919639 Msa0149900:intron 30.0%
GCGAATGTGACAATTATTAT+GGG - chr1_4:10919621-10919640 Msa0149900:intron 30.0%
! TTCAGAAACAGGTATTTTAC+TGG + chr1_4:10919864-10919883 None:intergenic 30.0%
TTAGAAAAACACTTGAGGAT+TGG + chr1_4:10920005-10920024 None:intergenic 30.0%
ATAGGATATTCTAGCGTAAT+AGG - chr1_4:10920032-10920051 Msa0149900:intron 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr1_4:10920105-10920124 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - chr1_4:10920106-10920125 Msa0149900:intron 30.0%
! GTAGTGTACAGAGTATTAAT+TGG - chr1_4:10920236-10920255 Msa0149900:intron 30.0%
! TGTACAGAGTATTAATTGGA+GGG - chr1_4:10920240-10920259 Msa0149900:intron 30.0%
! CAACTATATTTTGTAAGTGC+TGG + chr1_4:10920637-10920656 None:intergenic 30.0%
CAGCACTTACAAAATATAGT+TGG - chr1_4:10920635-10920654 Msa0149900:intron 30.0%
! ACAAAATATAGTTGGTTTCC+GGG - chr1_4:10920643-10920662 Msa0149900:intron 30.0%
! CTATTTCTTGTTATGTGTTG+GGG - chr1_4:10920714-10920733 Msa0149900:intron 30.0%
! TATAACTGGTAGTGATAACA+TGG + chr1_4:10920750-10920769 None:intergenic 30.0%
GTATAAGGTTATCGTTTATG+TGG + chr1_4:10920783-10920802 None:intergenic 30.0%
AAAGAAGATCAAAATGGCAT+TGG + chr1_4:10920922-10920941 None:intergenic 30.0%
GTAGTTCAAAGCATAAATGA+AGG + chr1_4:10920978-10920997 None:intergenic 30.0%
TGAGGTTCAACTTAATTCTA+AGG + chr1_4:10921006-10921025 None:intergenic 30.0%
! AACTGAAACCTAAGTCATTT+TGG - chr1_4:10921301-10921320 Msa0149900:CDS 30.0%
!! ACTGAAACCTAAGTCATTTT+GGG - chr1_4:10921302-10921321 Msa0149900:CDS 30.0%
TTCATGCTGCAATATGAATA+TGG + chr1_4:10921407-10921426 None:intergenic 30.0%
! AGCATGAATATTGATGATAC+AGG - chr1_4:10921419-10921438 Msa0149900:CDS 30.0%
! TTACTTGCCTTTTATACAAC+TGG - chr1_4:10921452-10921471 Msa0149900:CDS 30.0%
TTCTGCAATTGTAATTGAGT+TGG - chr1_4:10921531-10921550 Msa0149900:intron 30.0%
TACAAATGTAAGGACTAGAT+TGG - chr1_4:10921585-10921604 Msa0149900:intron 30.0%
ACAAATGTAAGGACTAGATT+GGG - chr1_4:10921586-10921605 Msa0149900:intron 30.0%
!! CTTTTTCACTCCTATTAAGA+AGG - chr1_4:10921706-10921725 Msa0149900:CDS 30.0%
AAAAATCCTGCCTTCTTAAT+AGG + chr1_4:10921719-10921738 None:intergenic 30.0%
! AGGATTTTTATCTGTTTGAC+TGG - chr1_4:10921730-10921749 Msa0149900:CDS 30.0%
! GGATTTTTATCTGTTTGACT+GGG - chr1_4:10921731-10921750 Msa0149900:CDS 30.0%
AACTTACAGATTCGACAGTA+CGG - chr1_4:10917544-10917563 Msa0149900:three_prime_UTR 35.0%
TGGAGAGATCCAAATTATTG+AGG - chr1_4:10917827-10917846 Msa0149900:three_prime_UTR 35.0%
!!! AATTTTCCAAAAGCATCCCT+TGG + chr1_4:10917873-10917892 None:intergenic 35.0%
CCATCAACAGAATACTTTGA+AGG + chr1_4:10917939-10917958 None:intergenic 35.0%
! CCTTCAAAGTATTCTGTTGA+TGG - chr1_4:10917936-10917955 Msa0149900:three_prime_UTR 35.0%
! AAAGTATTCTGTTGATGGAC+AGG - chr1_4:10917941-10917960 Msa0149900:three_prime_UTR 35.0%
TGTTTCACTTTCCTCGTTTA+AGG + chr1_4:10917970-10917989 None:intergenic 35.0%
TATGATGAATCAGCAAGTAG+CGG - chr1_4:10918065-10918084 Msa0149900:CDS 35.0%
ATTCACATATGAGTCAGATC+AGG - chr1_4:10918097-10918116 Msa0149900:intron 35.0%
AAATTCTATGTGAGGAGTAG+GGG + chr1_4:10918283-10918302 None:intergenic 35.0%
GAAATTCTATGTGAGGAGTA+GGG + chr1_4:10918284-10918303 None:intergenic 35.0%
TGAAATTCTATGTGAGGAGT+AGG + chr1_4:10918285-10918304 None:intergenic 35.0%
TGCTCTTGAAATTCTATGTG+AGG + chr1_4:10918291-10918310 None:intergenic 35.0%
! AAGCTCTGATCAGAAAACTA+TGG + chr1_4:10918522-10918541 None:intergenic 35.0%
CCATATCATTTGCAACAGAT+TGG + chr1_4:10918753-10918772 None:intergenic 35.0%
CCAATCTGTTGCAAATGATA+TGG - chr1_4:10918750-10918769 Msa0149900:CDS 35.0%
!! ATTGCCCTTTTTAGTGCTTT+GGG - chr1_4:10918854-10918873 Msa0149900:intron 35.0%
! TTGTCCCAAAGCACTAAAAA+GGG + chr1_4:10918861-10918880 None:intergenic 35.0%
! ATTGTCCCAAAGCACTAAAA+AGG + chr1_4:10918862-10918881 None:intergenic 35.0%
!! ATTGTGATGGATATAGAGAG+AGG + chr1_4:10919031-10919050 None:intergenic 35.0%
GTTGCCTTTCTTTAAACTCT+GGG + chr1_4:10919058-10919077 None:intergenic 35.0%
TAGATAAATCAGAATGCGCT+CGG + chr1_4:10919081-10919100 None:intergenic 35.0%
GAACACTTGTGTAGATAAAC+TGG - chr1_4:10919115-10919134 Msa0149900:intron 35.0%
AAACCCTCAGAACCAAAATT+TGG + chr1_4:10919189-10919208 None:intergenic 35.0%
! AGATTTGGTATGCCTTTCTT+CGG - chr1_4:10919219-10919238 Msa0149900:intron 35.0%
AATAAGAACAAAACATGGGG+GGG + chr1_4:10919278-10919297 None:intergenic 35.0%
! GCGTGTTGTAGATAATTTTG+TGG - chr1_4:10919321-10919340 Msa0149900:intron 35.0%
GATCGTATACTCAAATAGGT+TGG + chr1_4:10919355-10919374 None:intergenic 35.0%
TTATGTGACATGATCCTTCA+AGG - chr1_4:10919398-10919417 Msa0149900:CDS 35.0%
TATGTGACATGATCCTTCAA+GGG - chr1_4:10919399-10919418 Msa0149900:CDS 35.0%
TCACCTAAAAAATACTCCCT+CGG + chr1_4:10919648-10919667 None:intergenic 35.0%
GTTCATGATCTGTAGATATG+TGG - chr1_4:10919768-10919787 Msa0149900:intron 35.0%
!! TACCTGTTTCTGAATCTACA+AGG - chr1_4:10919870-10919889 Msa0149900:intron 35.0%
GATCTCATATAGATTGCGTA+GGG - chr1_4:10919916-10919935 Msa0149900:intron 35.0%
AATTCGATGTAAAATCTGCC+AGG - chr1_4:10919967-10919986 Msa0149900:intron 35.0%
! GTGTACAGAGTATTAATTGG+AGG - chr1_4:10920239-10920258 Msa0149900:intron 35.0%
TTTCCAACTTTCATCAAGTG+CGG - chr1_4:10920440-10920459 Msa0149900:intron 35.0%
TGAGATAACGACTTTGTACA+AGG - chr1_4:10920588-10920607 Msa0149900:intron 35.0%
!! CAAATGGATTAGCTCTAACT+GGG - chr1_4:10920611-10920630 Msa0149900:intron 35.0%
! CAAAATATAGTTGGTTTCCG+GGG - chr1_4:10920644-10920663 Msa0149900:intron 35.0%
CATCCACCAGAAATGAAAAT+GGG + chr1_4:10920680-10920699 None:intergenic 35.0%
GTGGATGATACAGTTATAAC+TGG + chr1_4:10920764-10920783 None:intergenic 35.0%
!! TCAACTTAATTCTAAGGTGG+TGG + chr1_4:10921000-10921019 None:intergenic 35.0%
! GGTTCAACTTAATTCTAAGG+TGG + chr1_4:10921003-10921022 None:intergenic 35.0%
! TTGTAAGGTGGTGAATTTTG+AGG + chr1_4:10921024-10921043 None:intergenic 35.0%
CATAATAAGAGGTTGTAAGG+TGG + chr1_4:10921036-10921055 None:intergenic 35.0%
GTGCATAATAAGAGGTTGTA+AGG + chr1_4:10921039-10921058 None:intergenic 35.0%
CAACTTATATTGCAGAGCTT+TGG + chr1_4:10921079-10921098 None:intergenic 35.0%
TCACAAGGATCAAATATCAC+TGG + chr1_4:10921109-10921128 None:intergenic 35.0%
CTAAATCTATCAGGATCACA+AGG + chr1_4:10921124-10921143 None:intergenic 35.0%
GTTGAGAGACTAAATCTATC+AGG + chr1_4:10921133-10921152 None:intergenic 35.0%
! TACAATCTTTTACTTCTGGC+AGG - chr1_4:10921205-10921224 Msa0149900:CDS 35.0%
! AGGTTTCAGTTTTCTGTTTG+TGG + chr1_4:10921292-10921311 None:intergenic 35.0%
!! CTGAAACCTAAGTCATTTTG+GGG - chr1_4:10921303-10921322 Msa0149900:CDS 35.0%
TTGCAGTACTAGTGAACATT+TGG - chr1_4:10921377-10921396 Msa0149900:CDS 35.0%
AAGTAAAAAGTTCCAGACGA+TGG - chr1_4:10921478-10921497 Msa0149900:CDS 35.0%
!! CATTTGTATGCTGGTTTCAA+CGG + chr1_4:10921573-10921592 None:intergenic 35.0%
GAAACCAGCATACAAATGTA+AGG - chr1_4:10921575-10921594 Msa0149900:intron 35.0%
TAGTCCTTACATTTGTATGC+TGG + chr1_4:10921582-10921601 None:intergenic 35.0%
TGGGTTTATCCATGGTTATT+TGG - chr1_4:10921605-10921624 Msa0149900:intron 35.0%
GTTTATCCATGGTTATTTGG+AGG - chr1_4:10921608-10921627 Msa0149900:intron 35.0%
ATAACACCTCCAAATAACCA+TGG + chr1_4:10921617-10921636 None:intergenic 35.0%
! AGGTGTTATATTTGGGTGTT+GGG - chr1_4:10921628-10921647 Msa0149900:intron 35.0%
ACTTACAGATTCGACAGTAC+GGG - chr1_4:10917545-10917564 Msa0149900:three_prime_UTR 40.0%
AACAACGCTTTCGCTTAAGA+CGG - chr1_4:10917608-10917627 Msa0149900:three_prime_UTR 40.0%
!! TGGGATGTTTCTTAGCCTTA+TGG - chr1_4:10917807-10917826 Msa0149900:three_prime_UTR 40.0%
! ATACTTTGAAGGCAACACAC+TGG + chr1_4:10917928-10917947 None:intergenic 40.0%
TGGAACGAATGAGTGATTGA+TGG + chr1_4:10918037-10918056 None:intergenic 40.0%
GGTGTCTGGTGTATTTAGAT+TGG + chr1_4:10918132-10918151 None:intergenic 40.0%
! TTTTCATGGTCAGGTAGGAA+TGG + chr1_4:10918161-10918180 None:intergenic 40.0%
!! CATCTTTTTCATGGTCAGGT+AGG + chr1_4:10918166-10918185 None:intergenic 40.0%
!! TCTGCATCTTTTTCATGGTC+AGG + chr1_4:10918170-10918189 None:intergenic 40.0%
AAACAATCCTCCATCAGAGA+AGG - chr1_4:10918230-10918249 Msa0149900:intron 40.0%
AACAATCCTCCATCAGAGAA+GGG - chr1_4:10918231-10918250 Msa0149900:intron 40.0%
!! ATTTCAAGAGCATTCTTGCC+TGG - chr1_4:10918299-10918318 Msa0149900:intron 40.0%
AACATACGATATACCCAACC+AGG + chr1_4:10918320-10918339 None:intergenic 40.0%
ACTCCTATTTGCTTGCACAA+AGG - chr1_4:10918342-10918361 Msa0149900:intron 40.0%
CTCCTATTTGCTTGCACAAA+GGG - chr1_4:10918343-10918362 Msa0149900:intron 40.0%
CTGTTGCAAATGATATGGCT+TGG - chr1_4:10918755-10918774 Msa0149900:CDS 40.0%
AAGCACTAAAAAGGGCAATC+TGG + chr1_4:10918853-10918872 None:intergenic 40.0%
!! GATTGCCCTTTTTAGTGCTT+TGG - chr1_4:10918853-10918872 Msa0149900:intron 40.0%
AGCACCCAGAGTTTAAAGAA+AGG - chr1_4:10919051-10919070 Msa0149900:intron 40.0%
GGTTGCCTTTCTTTAAACTC+TGG + chr1_4:10919059-10919078 None:intergenic 40.0%
AGATAAATCAGAATGCGCTC+GGG + chr1_4:10919080-10919099 None:intergenic 40.0%
! GATTTGGTATGCCTTTCTTC+GGG - chr1_4:10919220-10919239 Msa0149900:intron 40.0%
AACTGTCTAAACCCGAAGAA+AGG + chr1_4:10919234-10919253 None:intergenic 40.0%
ATGTGACATGATCCTTCAAG+GGG - chr1_4:10919400-10919419 Msa0149900:CDS 40.0%
TGACAATTATTATGGGTCCG+AGG - chr1_4:10919628-10919647 Msa0149900:intron 40.0%
GACAATTATTATGGGTCCGA+GGG - chr1_4:10919629-10919648 Msa0149900:intron 40.0%
GATATGTGGAAGCAAATCGT+TGG - chr1_4:10919782-10919801 Msa0149900:intron 40.0%
!! TTAACAAGAGCATCCATGCT+TGG + chr1_4:10919812-10919831 None:intergenic 40.0%
TGCCTTGTAGATTCAGAAAC+AGG + chr1_4:10919875-10919894 None:intergenic 40.0%
! TGTTTCTGAATCTACAAGGC+AGG - chr1_4:10919874-10919893 Msa0149900:intron 40.0%
!! AGGAGCTTTTGGAGATTGAT+GGG - chr1_4:10919894-10919913 Msa0149900:intron 40.0%
GGATCTCATATAGATTGCGT+AGG - chr1_4:10919915-10919934 Msa0149900:intron 40.0%
CGGAGGGAGTAATATCTTAT+AGG + chr1_4:10920085-10920104 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr1_4:10920101-10920120 None:intergenic 40.0%
!! AAGCGACGCTCATTTTGAAA+CGG - chr1_4:10920340-10920359 Msa0149900:intron 40.0%
TATCCGCACTTGATGAAAGT+TGG + chr1_4:10920446-10920465 None:intergenic 40.0%
CATTTACATACGCACCAACA+GGG + chr1_4:10920552-10920571 None:intergenic 40.0%
ACGACTTTGTACAAGGCAAA+TGG - chr1_4:10920595-10920614 Msa0149900:intron 40.0%
!! GCAAATGGATTAGCTCTAAC+TGG - chr1_4:10920610-10920629 Msa0149900:intron 40.0%
! TGTCTGCCCATTTTCATTTC+TGG - chr1_4:10920671-10920690 Msa0149900:intron 40.0%
GCATCCACCAGAAATGAAAA+TGG + chr1_4:10920681-10920700 None:intergenic 40.0%
! TGGTAGTGATAACATGGCAA+TGG + chr1_4:10920744-10920763 None:intergenic 40.0%
GAAGGACTGTGCATAATAAG+AGG + chr1_4:10921047-10921066 None:intergenic 40.0%
!! GAGCTTTGGAGTTTGTATGA+AGG + chr1_4:10921065-10921084 None:intergenic 40.0%
TGTAAAAAGCCACCCCATAT+GGG + chr1_4:10921268-10921287 None:intergenic 40.0%
CGTATACCCCAAAATGACTT+AGG + chr1_4:10921312-10921331 None:intergenic 40.0%
! TCTTAGATTTTGCCATCGTC+TGG + chr1_4:10921493-10921512 None:intergenic 40.0%
GACTAGATTGGGTTTATCCA+TGG - chr1_4:10921597-10921616 Msa0149900:intron 40.0%
! GAGGTGTTATATTTGGGTGT+TGG - chr1_4:10921627-10921646 Msa0149900:intron 40.0%
TTCACTCCTATTAAGAAGGC+AGG - chr1_4:10921710-10921729 Msa0149900:CDS 40.0%
CATTCAACGAACCATCCTCT+AGG + chr1_4:10917573-10917592 None:intergenic 45.0%
AGAGGATGGTTCGTTGAATG+TGG - chr1_4:10917573-10917592 Msa0149900:three_prime_UTR 45.0%
! AGGAATGGTGTTAAGGTGTC+TGG + chr1_4:10918146-10918165 None:intergenic 45.0%
! GTCAGGTAGGAATGGTGTTA+AGG + chr1_4:10918153-10918172 None:intergenic 45.0%
! GGAGGATTGTTTTCCAGAAG+AGG + chr1_4:10918222-10918241 None:intergenic 45.0%
ATTAAGCCCTTCTCTGATGG+AGG + chr1_4:10918240-10918259 None:intergenic 45.0%
CCAATTAAGCCCTTCTCTGA+TGG + chr1_4:10918243-10918262 None:intergenic 45.0%
CCATCAGAGAAGGGCTTAAT+TGG - chr1_4:10918240-10918259 Msa0149900:intron 45.0%
!! AAGAGCATTCTTGCCTGGTT+GGG - chr1_4:10918304-10918323 Msa0149900:intron 45.0%
AGCCCTTTGTGCAAGCAAAT+AGG + chr1_4:10918348-10918367 None:intergenic 45.0%
GCAATGTGCGCAACATTTGA+GGG + chr1_4:10918500-10918519 None:intergenic 45.0%
! TGATCAGAGCTTTCGAGTGT+AGG - chr1_4:10918530-10918549 Msa0149900:intron 45.0%
GGTACAATAAATGGGAGCCT+TGG - chr1_4:10918673-10918692 Msa0149900:CDS 45.0%
AAATGGGAGCCTTGGTACAA+TGG - chr1_4:10918681-10918700 Msa0149900:CDS 45.0%
! TGATATGGCTTGGCTACAGT+AGG - chr1_4:10918765-10918784 Msa0149900:CDS 45.0%
GGCTACAGTAGGTCTATAAC+AGG - chr1_4:10918776-10918795 Msa0149900:CDS 45.0%
!! AACTCTGGGTGCTATTGTGA+TGG + chr1_4:10919044-10919063 None:intergenic 45.0%
GGGCATAGAGACTAAACACA+TGG + chr1_4:10919258-10919277 None:intergenic 45.0%
TGTGACATGATCCTTCAAGG+GGG - chr1_4:10919401-10919420 Msa0149900:CDS 45.0%
!!! GGTCCGAGGGAGTATTTTTT+AGG - chr1_4:10919642-10919661 Msa0149900:intron 45.0%
! ATCTACAAGGCAGGAGCTTT+TGG - chr1_4:10919883-10919902 Msa0149900:intron 45.0%
!! CAGGAGCTTTTGGAGATTGA+TGG - chr1_4:10919893-10919912 Msa0149900:intron 45.0%
!! GATTGGTGACGATGATTACC+TGG + chr1_4:10919988-10920007 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr1_4:10920102-10920121 None:intergenic 45.0%
!!! GACGCTCATTTTGAAACGGA+GGG - chr1_4:10920344-10920363 Msa0149900:intron 45.0%
! ATGCTGGTGATGTCTAGTGA+AGG - chr1_4:10920526-10920545 Msa0149900:intron 45.0%
GCATTTACATACGCACCAAC+AGG + chr1_4:10920553-10920572 None:intergenic 45.0%
GGTGCGTATGTAAATGCAAC+TGG - chr1_4:10920556-10920575 Msa0149900:intron 45.0%
!! CTGCCCATTTTCATTTCTGG+TGG - chr1_4:10920674-10920693 Msa0149900:intron 45.0%
AAGCAGTGGTACACATGTCA+TGG + chr1_4:10920865-10920884 None:intergenic 45.0%
CCATGTGTACAATGAAGCAG+TGG + chr1_4:10920879-10920898 None:intergenic 45.0%
CCACTGCTTCATTGTACACA+TGG - chr1_4:10920876-10920895 Msa0149900:intron 45.0%
TCTCTCAACTATCACCTTCG+AGG - chr1_4:10921144-10921163 Msa0149900:CDS 45.0%
ACAGCATAGAAGATCCTCGA+AGG + chr1_4:10921161-10921180 None:intergenic 45.0%
TTACTTCTGGCAGGTATGCA+TGG - chr1_4:10921214-10921233 Msa0149900:CDS 45.0%
TGCCACATGTGAAACCCATA+TGG - chr1_4:10921251-10921270 Msa0149900:CDS 45.0%
GCCACATGTGAAACCCATAT+GGG - chr1_4:10921252-10921271 Msa0149900:CDS 45.0%
CCACATGTGAAACCCATATG+GGG - chr1_4:10921253-10921272 Msa0149900:CDS 45.0%
CTGTAAAAAGCCACCCCATA+TGG + chr1_4:10921269-10921288 None:intergenic 45.0%
!!! TCTTTTTAATAAATAATTTT+TGG - chr1_4:10919299-10919318 Msa0149900:intron 5.0%
TCGTTGAATGTGGTCACTCG+TGG - chr1_4:10917583-10917602 Msa0149900:three_prime_UTR 50.0%
GCTTTCGCTTAAGACGGTGT+TGG - chr1_4:10917614-10917633 Msa0149900:three_prime_UTR 50.0%
! AAGACGGTGTTGGATCGATG+TGG - chr1_4:10917624-10917643 Msa0149900:three_prime_UTR 50.0%
TTGGATCGATGTGGAAGGAG+TGG - chr1_4:10917633-10917652 Msa0149900:three_prime_UTR 50.0%
ACATACCATCGCGAACTCCA+AGG - chr1_4:10917853-10917872 Msa0149900:three_prime_UTR 50.0%
CATACCATCGCGAACTCCAA+GGG - chr1_4:10917854-10917873 Msa0149900:three_prime_UTR 50.0%
! CGAACTCCAAGGGATGCTTT+TGG - chr1_4:10917864-10917883 Msa0149900:three_prime_UTR 50.0%
TTGAAGGCAACACACTGGCA+CGG + chr1_4:10917923-10917942 None:intergenic 50.0%
TGGACAGGACTCCTTAAACG+AGG - chr1_4:10917956-10917975 Msa0149900:exon 50.0%
ATAGGGAGCTGTTCCTCTTC+TGG - chr1_4:10918206-10918225 Msa0149900:intron 50.0%
!! CAAGAGCATTCTTGCCTGGT+TGG - chr1_4:10918303-10918322 Msa0149900:intron 50.0%
GGCAATGTGCGCAACATTTG+AGG + chr1_4:10918501-10918520 None:intergenic 50.0%
GGAGCCTTGGTACAATGGTT+GGG - chr1_4:10918686-10918705 Msa0149900:CDS 50.0%
GAGCCTTGGTACAATGGTTG+GGG - chr1_4:10918687-10918706 Msa0149900:CDS 50.0%
CAACCCCAACCATTGTACCA+AGG + chr1_4:10918693-10918712 None:intergenic 50.0%
GGGGTTGTTGCTATGTGACA+AGG - chr1_4:10918706-10918725 Msa0149900:CDS 50.0%
CCAACGCGAAGCTTAGGAAA+GGG + chr1_4:10918807-10918826 None:intergenic 50.0%
!! ATCTGGTGCCATGAAGCTCT+TGG + chr1_4:10918836-10918855 None:intergenic 50.0%
GTGACATGATCCTTCAAGGG+GGG - chr1_4:10919402-10919421 Msa0149900:CDS 50.0%
TATTGACACTCCCCCCTTGA+AGG + chr1_4:10919415-10919434 None:intergenic 50.0%
AATCGTTGGTGCACCAAGCA+TGG - chr1_4:10919796-10919815 Msa0149900:intron 50.0%
!!! CGACGCTCATTTTGAAACGG+AGG - chr1_4:10920343-10920362 Msa0149900:intron 50.0%
TGCAAAGCGGAGTGATATGC+TGG - chr1_4:10920510-10920529 Msa0149900:intron 50.0%
ATGTCTAGTGAAGGCCCTGT+TGG - chr1_4:10920535-10920554 Msa0149900:intron 50.0%
AAATGGGCAGACACTTACCC+CGG + chr1_4:10920664-10920683 None:intergenic 50.0%
! AAATGGGAAGTGCAGCTGGA+TGG + chr1_4:10920953-10920972 None:intergenic 50.0%
! GGAAAAATGGGAAGTGCAGC+TGG + chr1_4:10920957-10920976 None:intergenic 50.0%
CCCCATATGGGTTTCACATG+TGG + chr1_4:10921256-10921275 None:intergenic 50.0%
CATGTGAAACCCATATGGGG+TGG - chr1_4:10921256-10921275 Msa0149900:CDS 50.0%
! CGGTGTTGGATCGATGTGGA+AGG - chr1_4:10917628-10917647 Msa0149900:three_prime_UTR 55.0%
AACACACTGGCACGGTTGCA+AGG + chr1_4:10917915-10917934 None:intergenic 55.0%
TTGCTTGCACAAAGGGCTGC+AGG - chr1_4:10918350-10918369 Msa0149900:intron 55.0%
TGCGCAACATTTGAGGGCTG+AGG + chr1_4:10918494-10918513 None:intergenic 55.0%
GGGAGCCTTGGTACAATGGT+TGG - chr1_4:10918685-10918704 Msa0149900:CDS 55.0%
CCCTTTCCTAAGCTTCGCGT+TGG - chr1_4:10918804-10918823 Msa0149900:intron 55.0%
GCCAACGCGAAGCTTAGGAA+AGG + chr1_4:10918808-10918827 None:intergenic 55.0%
CTGATGCCAACGCGAAGCTT+AGG + chr1_4:10918813-10918832 None:intergenic 55.0%
GGCATCAGCCAAGAGCTTCA+TGG - chr1_4:10918825-10918844 Msa0149900:intron 55.0%
GCATCCCTTGGAGTTCGCGA+TGG + chr1_4:10917861-10917880 None:intergenic 60.0%
TCGACAGTACGGGCGCCTAG+AGG - chr1_4:10917555-10917574 Msa0149900:three_prime_UTR 65.0%
CAGTACGGGCGCCTAGAGGA+TGG - chr1_4:10917559-10917578 Msa0149900:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 10917511 10921813 10917511 ID=Msa0149900;Name=Msa0149900
chr1_4 mRNA 10917511 10921813 10917511 ID=Msa0149900-mRNA-1;Parent=Msa0149900;Name=Msa0149900-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.8|1|1|1|5|451|399
chr1_4 exon 10917511 10918097 10917511 ID=Msa0149900-mRNA-1:exon:4603;Parent=Msa0149900-mRNA-1
chr1_4 exon 10918659 10918822 10918659 ID=Msa0149900-mRNA-1:exon:4602;Parent=Msa0149900-mRNA-1
chr1_4 exon 10919336 10919541 10919336 ID=Msa0149900-mRNA-1:exon:4601;Parent=Msa0149900-mRNA-1
chr1_4 exon 10920953 10921502 10920953 ID=Msa0149900-mRNA-1:exon:4600;Parent=Msa0149900-mRNA-1
chr1_4 exon 10921670 10921813 10921670 ID=Msa0149900-mRNA-1:exon:4599;Parent=Msa0149900-mRNA-1
chr1_4 CDS 10921670 10921813 10921670 ID=Msa0149900-mRNA-1:cds;Parent=Msa0149900-mRNA-1
chr1_4 CDS 10920953 10921502 10920953 ID=Msa0149900-mRNA-1:cds;Parent=Msa0149900-mRNA-1
chr1_4 CDS 10919336 10919541 10919336 ID=Msa0149900-mRNA-1:cds;Parent=Msa0149900-mRNA-1
chr1_4 CDS 10918659 10918822 10918659 ID=Msa0149900-mRNA-1:cds;Parent=Msa0149900-mRNA-1
chr1_4 CDS 10917962 10918097 10917962 ID=Msa0149900-mRNA-1:cds;Parent=Msa0149900-mRNA-1
chr1_4 three_prime_UTR 10917511 10917961 10917511 ID=Msa0149900-mRNA-1:three_prime_utr;Parent=Msa0149900-mRNA-1
Gene Sequence

>Msa0149900

ATGATTGCATCAATCAATTTGTATTGCTTGCTAAACTTACAGATTCGACAGTACGGGCGCCTAGAGGATGGTTCGTTGAATGTGGTCACTCGTGGACAACAACGCTTTCGCTTAAGACGGTGTTGGATCGATGTGGAAGGAGTGCCTTATGGAGAGATCCAAATTATTGAGGAAAACATACCATCGCGAACTCCAAGGGATGCTTTTGGAAAATTAACACCCTTAATTAATCTTCCTTGCAACCGTGCCAGTGTGTTGCCTTCAAAGTATTCTGTTGATGGACAGGACTCCTTAAACGAGGAAAGTGAAACAGAAGAGAGCTTTGAGAATGAACTTTCATCTACAGAGAGAAGAATCCATCAATCACTCATTCGTTCCAGTTTTGAATATGATGAATCAGCAAGTAGCGGTGATGATAAATTCACATATGAGTCAGATCAGGAAATTAGATCCAATCTAAATACACCAGACACCTTAACACCATTCCTACCTGACCATGAAAAAGATGCAGAAAATCTGGATTCTAGAATAGGGAGCTGTTCCTCTTCTGGAAAACAATCCTCCATCAGAGAAGGGCTTAATTGGTGTTCTAAAAATAGAGACCCCTACTCCTCACATAGAATTTCAAGAGCATTCTTGCCTGGTTGGGTATATCGTATGTTTGACTCCTATTTGCTTGCACAAAGGGCTGCAGATATGTGGAAGCAAATCGTTGGTGCACCAAGCATGGATGCTCTTGTTAAGAAGCCTGATGTTTTATCATTTTCTATTGCCAGTAAAATACCTGTTTCTGAATCTACAAGGCAGGAGCTTTTGGAGATTGATGGGATCTCATATAGATTGCGTAGGGAAATTGAATTACTAGAAAGCATTGATCTAATTCGATGTAAAATCTGCCAGATTATAATTGCAAAGCGGAGTGATATGCTGGTGATGTCTAGTGAAGGCCCTGTTGGTGCGTATGTAAATGCAACTGGTTATGTGCATGAGATAACGACTTTGTACAAGGCAAATGGATTAGCTCTAACTGGGCCAGCACTTACAAAATATAGTTGGTTTCCGGGGTATGCATGGACAATTGCTAACTGTGCCACATGTGAAACCCATATGGGGTGGCTTTTTACAGCCACAAACAGAAAACTGAAACCTAAGTCATTTTGGGGTATACGTAACTGTCAAGTTGCAGACGAAACACACTAA
Protein sequence

>Msa0149900

MIASINLYCLLNLQIRQYGRLEDGSLNVVTRGQQRFRLRRCWIDVEGVPYGEIQIIEENIPSRTPRDAFGKLTPLINLPCNRASVLPSKYSVDGQDSLNEESETEESFENELSSTERRIHQSLIRSSFEYDESASSGDDKFTYESDQEIRSNLNTPDTLTPFLPDHEKDAENLDSRIGSCSSSGKQSSIREGLNWCSKNRDPYSSHRISRAFLPGWVYRMFDSYLLAQRAADMWKQIVGAPSMDALVKKPDVLSFSIASKIPVSESTRQELLEIDGISYRLRREIELLESIDLIRCKICQIIIAKRSDMLVMSSEGPVGAYVNATGYVHEITTLYKANGLALTGPALTKYSWFPGYAWTIANCATCETHMGWLFTATNRKLKPKSFWGIRNCQVADETH*