Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0361250 | KEH33846.1 | 95.783 | 166 | 6 | 1 | 1 | 165 | 1 | 166 | 2.98e-70 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0361250 | A0A072UWT0 | 95.783 | 166 | 6 | 1 | 1 | 165 | 1 | 166 | 1.42e-70 | 219 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017120 | Msa0361250 | 0.806790 | 6.931289e-50 | -8.615850e-47 |
| Msa0043940 | Msa0361250 | 0.824613 | 7.342071e-54 | -8.615850e-47 |
| Msa0077410 | Msa0361250 | 0.841464 | 4.677318e-58 | -8.615850e-47 |
| Msa0092710 | Msa0361250 | 0.825095 | 5.648783e-54 | -8.615850e-47 |
| Msa0125280 | Msa0361250 | 0.819405 | 1.181482e-52 | -8.615850e-47 |
| Msa0141670 | Msa0361250 | 0.806900 | 6.570535e-50 | -8.615850e-47 |
| Msa0143970 | Msa0361250 | 0.801231 | 9.925521e-49 | -8.615850e-47 |
| Msa0182640 | Msa0361250 | 0.818546 | 1.852707e-52 | -8.615850e-47 |
| Msa0219190 | Msa0361250 | 0.800057 | 1.723094e-48 | -8.615850e-47 |
| Msa0222660 | Msa0361250 | 0.831889 | 1.292074e-55 | -8.615850e-47 |
| Msa0264050 | Msa0361250 | 0.829762 | 4.293526e-55 | -8.615850e-47 |
| Msa0277530 | Msa0361250 | 0.824612 | 7.344909e-54 | -8.615850e-47 |
| Msa0301980 | Msa0361250 | 0.825881 | 3.680058e-54 | -8.615850e-47 |
| Msa0315480 | Msa0361250 | 0.804478 | 2.118919e-49 | -8.615850e-47 |
| Msa0339310 | Msa0361250 | 0.824757 | 6.789106e-54 | -8.615850e-47 |
| Msa0361250 | Msa0361260 | 0.910199 | 2.447022e-82 | -8.615850e-47 |
| Msa0361250 | Msa0370600 | 0.815755 | 7.856333e-52 | -8.615850e-47 |
| Msa0361250 | Msa0408630 | 0.916703 | 1.293596e-85 | -8.615850e-47 |
| Msa0361250 | Msa0408640 | 0.909031 | 8.921670e-82 | -8.615850e-47 |
| Msa0361250 | Msa0418200 | 0.820907 | 5.352141e-53 | -8.615850e-47 |
| Msa0361250 | Msa0453520 | 0.877791 | 4.734493e-69 | -8.615850e-47 |
| Msa0361250 | Msa0464540 | 0.812684 | 3.745794e-51 | -8.615850e-47 |
| Msa0361250 | Msa0524210 | 0.829647 | 4.578553e-55 | -8.615850e-47 |
| Msa0361250 | Msa0528940 | 0.817152 | 3.823508e-52 | -8.615850e-47 |
| Msa0361250 | Msa0544220 | 0.817780 | 2.761652e-52 | -8.615850e-47 |
| Msa0361250 | Msa0561510 | 0.806217 | 9.157189e-50 | -8.615850e-47 |
| Msa0361250 | Msa0601110 | 0.801685 | 8.013116e-49 | -8.615850e-47 |
| Msa0361250 | Msa0640990 | 0.805305 | 1.423206e-49 | -8.615850e-47 |
| Msa0361250 | Msa0641620 | 0.816780 | 4.635114e-52 | -8.615850e-47 |
| Msa0361250 | Msa0667970 | 0.812595 | 3.917029e-51 | -8.615850e-47 |
| Msa0361250 | Msa0678890 | 0.808159 | 3.552132e-50 | -8.615850e-47 |
| Msa0361250 | Msa0680150 | 0.800808 | 1.211202e-48 | -8.615850e-47 |
| Msa0361250 | Msa0720270 | 0.827801 | 1.280214e-54 | -8.615850e-47 |
| Msa0361250 | Msa0738860 | 0.805520 | 1.283098e-49 | -8.615850e-47 |
| Msa0361250 | Msa0738870 | 0.808830 | 2.554037e-50 | -8.615850e-47 |
| Msa0361250 | Msa0760840 | 0.812335 | 4.465973e-51 | -8.615850e-47 |
| Msa0361250 | Msa0760890 | 0.805606 | 1.230589e-49 | -8.615850e-47 |
| Msa0361250 | Msa0761580 | 0.805274 | 1.444791e-49 | -8.615850e-47 |
| Msa0361250 | Msa0803130 | 0.826951 | 2.046039e-54 | -8.615850e-47 |
| Msa0361250 | Msa0819360 | 0.808254 | 3.390037e-50 | -8.615850e-47 |
| Msa0361250 | Msa0841490 | 0.826799 | 2.225167e-54 | -8.615850e-47 |
| Msa0361250 | Msa0859530 | 0.800788 | 1.222905e-48 | -8.615850e-47 |
| Msa0361250 | Msa0873190 | 0.830987 | 2.154754e-55 | -8.615850e-47 |
| Msa0361250 | Msa0896210 | 0.802494 | 5.463081e-49 | -8.615850e-47 |
| Msa0361250 | Msa0951460 | 0.804158 | 2.471123e-49 | -8.615850e-47 |
| Msa0361250 | Msa1014270 | 0.819517 | 1.114096e-52 | -8.615850e-47 |
| Msa0361250 | Msa1041530 | 0.808233 | 3.424964e-50 | -8.615850e-47 |
| Msa0361250 | Msa1061500 | 0.817537 | 3.132416e-52 | -8.615850e-47 |
| Msa0361250 | Msa1070420 | 0.807830 | 4.172921e-50 | -8.615850e-47 |
| Msa0361250 | Msa1081570 | 0.805160 | 1.526220e-49 | -8.615850e-47 |
| Msa0361250 | Msa1123880 | 0.804290 | 2.319221e-49 | -8.615850e-47 |
| Msa0361250 | Msa1127140 | 0.811549 | 6.624389e-51 | -8.615850e-47 |
| Msa0361250 | Msa1130690 | 0.803476 | 3.423948e-49 | -8.615850e-47 |
| Msa0361250 | Msa1150230 | 0.813894 | 2.031705e-51 | -8.615850e-47 |
| Msa0361250 | Msa1157730 | 0.813522 | 2.452639e-51 | -8.615850e-47 |
| Msa0361250 | Msa1176160 | 0.812426 | 4.265012e-51 | -8.615850e-47 |
| Msa0361250 | Msa1200920 | 0.803293 | 3.735867e-49 | -8.615850e-47 |
| Msa0361250 | Msa1272330 | 0.806072 | 9.826104e-50 | -8.615850e-47 |
| Msa0361250 | Msa1305750 | 0.811339 | 7.355477e-51 | -8.615850e-47 |
| Msa0361250 | Msa1307190 | 0.801125 | 1.043438e-48 | -8.615850e-47 |
| Msa0361250 | Msa1355400 | 0.816668 | 4.912555e-52 | -8.615850e-47 |
| Msa0361250 | Msa1365020 | 0.854908 | 8.995034e-62 | -8.615850e-47 |
| Msa0361250 | Msa1367410 | 0.857450 | 1.618456e-62 | -8.615850e-47 |
| Msa0361250 | Msa1417650 | 0.835002 | 2.161914e-56 | -8.615850e-47 |
| Msa0361250 | Msa1420060 | 0.829090 | 6.253376e-55 | -8.615850e-47 |
| Msa0361250 | Msa1425060 | 0.804176 | 2.449293e-49 | -8.615850e-47 |
| Msa0361250 | Msa1434020 | 0.874932 | 4.585619e-68 | -8.615850e-47 |
| Msa0361250 | Msa1439120 | 0.822082 | 2.865678e-53 | -8.615850e-47 |
| Msa0361250 | Msa1440220 | 0.826737 | 2.302257e-54 | -8.615850e-47 |
| Msa0361250 | Msa1442290 | 0.804404 | 2.195324e-49 | -8.615850e-47 |
| Msa0361250 | Msa1444450 | 0.819440 | 1.160120e-52 | -8.615850e-47 |
| Msa0361250 | Msa1455660 | 0.823326 | 1.471098e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 101 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGGAGGAGGTGGTGGTTT+TGG | 0.204853 | 3_1:+51438208 | Msa0361250:CDS |
| GGAGGTGGTGGAGGAGGATT+TGG | 0.214073 | 3_1:+51438448 | Msa0361250:CDS |
| CTTGGAGGTGGAGGCGGTTT+GGG | 0.228591 | 3_1:+51438316 | Msa0361250:CDS |
| GGTGGTGTTGGCGGAGGATC+AGG | 0.268818 | 3_1:+51438370 | Msa0361250:CDS |
| TTTGGTGGAGGTGCAGGAGG+AGG | 0.290797 | 3_1:+51438196 | Msa0361250:CDS |
| GGTGGCTCTGGAGGTGGATT+TGG | 0.297750 | 3_1:+51438262 | Msa0361250:CDS |
| AAGCTTGGGGTTAGTGATAA+GGG | 0.301032 | 3_1:+51438136 | Msa0361250:CDS |
| ACTTGGAGGTGGAGGCGGTT+TGG | 0.309016 | 3_1:+51438315 | Msa0361250:CDS |
| GGTGGCGGTGGTAGTGGAGG+AGG | 0.312152 | 3_1:+51438232 | Msa0361250:CDS |
| TTTGGAGGAGGATCAGGATT+TGG | 0.317441 | 3_1:+51438394 | Msa0361250:CDS |
| GGTGGAGGCGGTTTGGGTGG+AGG | 0.321379 | 3_1:+51438322 | Msa0361250:CDS |
| GGTGGAGCTGGAGGTGGAGT+TGG | 0.322109 | 3_1:+51438523 | Msa0361250:CDS |
| TTGGGTGGAGGTGGCGGCGG+TGG | 0.329940 | 3_1:+51438334 | Msa0361250:CDS |
| GGTGGAGGTGCAGGAGGAGG+TGG | 0.338908 | 3_1:+51438199 | Msa0361250:CDS |
| GGAGGATTTGGAGGTGGTGG+TGG | 0.339829 | 3_1:+51438460 | Msa0361250:CDS |
| TTCTTTCGTCGTCCAGGGTT+TGG | 0.341444 | 3_1:+51438178 | Msa0361250:CDS |
| GGAGGTGCAGGAGGAGGTGG+TGG | 0.346229 | 3_1:+51438202 | Msa0361250:CDS |
| GGTGGTGGTGGCGGTGGACT+TGG | 0.348398 | 3_1:+51438472 | Msa0361250:CDS |
| GGAGGTGGCGGCGGTGGATT+CGG | 0.349666 | 3_1:+51438340 | Msa0361250:CDS |
| GCCGGAGCCGGTAGTGGATT+TGG | 0.355176 | 3_1:+51438499 | Msa0361250:CDS |
| GGTGGATTTGGTGCCGGTGC+TGG | 0.366301 | 3_1:+51438274 | Msa0361250:CDS |
| GGATTTGGAGGTGGTGGTGG+CGG | 0.368760 | 3_1:+51438463 | Msa0361250:CDS |
| GGCGGTTTGGGTGGAGGTGG+CGG | 0.370406 | 3_1:+51438328 | Msa0361250:CDS |
| TTTGGTGGTGGAGCTGGAGG+TGG | 0.370741 | 3_1:+51438517 | Msa0361250:CDS |
| GGGATAGGTGGTGGCTCTGG+AGG | 0.373880 | 3_1:+51438253 | Msa0361250:CDS |
| GGACTAGGAGGAGGTGGTGG+AGG | 0.375243 | 3_1:+51438439 | Msa0361250:CDS |
| GGAGGGATAGGTGGTGGCTC+TGG | 0.376658 | 3_1:+51438250 | Msa0361250:CDS |
| TCAGGGTTTGGAGGAGGATC+AGG | 0.377455 | 3_1:+51438388 | Msa0361250:CDS |
| GAGCACCAAGAAGCACAAAA+AGG | 0.379740 | 3_1:-51438087 | None:intergenic |
| GCTGGAGGTGGAGTTGGAGG+TGG | 0.380269 | 3_1:+51438529 | Msa0361250:CDS |
| TTTGGTGGTGGCGGTGGTAG+TGG | 0.380494 | 3_1:+51438226 | Msa0361250:CDS |
| GGAGGAGGATTTGGAGGTGG+TGG | 0.384560 | 3_1:+51438457 | Msa0361250:CDS |
| GGCGGTGGACTTGGTGGTGC+CGG | 0.385439 | 3_1:+51438481 | Msa0361250:CDS |
| CTAGGAGGAGGTGGTGGAGG+AGG | 0.386166 | 3_1:+51438442 | Msa0361250:CDS |
| CCAGGGTTTGGTGGAGGTGC+AGG | 0.387674 | 3_1:+51438190 | Msa0361250:CDS |
| GGAGCTGGAGGTGGAGTTGG+AGG | 0.387697 | 3_1:+51438526 | Msa0361250:CDS |
| AGTGGATTTGGTGGTGGAGC+TGG | 0.390237 | 3_1:+51438511 | Msa0361250:CDS |
| GGAGGCGGTTTGGGTGGAGG+TGG | 0.394154 | 3_1:+51438325 | Msa0361250:CDS |
| GCATTGATGCAAGGAAGCTT+GGG | 0.399616 | 3_1:+51438122 | Msa0361250:CDS |
| ATAGGTGGTGGCTCTGGAGG+TGG | 0.400925 | 3_1:+51438256 | Msa0361250:CDS |
| TTTGGAGGTGGTGGTGGCGG+TGG | 0.407712 | 3_1:+51438466 | Msa0361250:CDS |
| GTTGGCGGAGGATCAGGGTT+TGG | 0.411175 | 3_1:+51438376 | Msa0361250:CDS |
| GGTGGTGTCGGTGCTGGTAG+TGG | 0.419926 | 3_1:+51438418 | Msa0361250:CDS |
| GGTGGTGGAGGAGGATTTGG+AGG | 0.420178 | 3_1:+51438451 | Msa0361250:CDS |
| GGCGGTGGATTCGGTGGAGG+AGG | 0.422759 | 3_1:+51438349 | Msa0361250:CDS |
| GCCGGTGCTGGTGGAGGAGC+AGG | 0.423633 | 3_1:+51438286 | Msa0361250:CDS |
| GGTGGTGCCGGAGCCGGTAG+TGG | 0.426233 | 3_1:+51438493 | Msa0361250:CDS |
| TTCGGTGGAGGAGGTGGTGT+TGG | 0.428134 | 3_1:+51438358 | Msa0361250:CDS |
| AAAACTTTCTTTCGTCGTCC+AGG | 0.428443 | 3_1:+51438172 | Msa0361250:CDS |
| AGTGGACTAGGAGGAGGTGG+TGG | 0.432132 | 3_1:+51438436 | Msa0361250:CDS |
| GGAGGAGCAGGAAGTGGACT+TGG | 0.432274 | 3_1:+51438298 | Msa0361250:CDS |
| TTTGGTGGTGGTGTCGGTGC+TGG | 0.433953 | 3_1:+51438412 | Msa0361250:CDS |
| GGTAGTGGAGGAGGGATAGG+TGG | 0.434423 | 3_1:+51438241 | Msa0361250:CDS |
| GAAGCTTGGGGTTAGTGATA+AGG | 0.438720 | 3_1:+51438135 | Msa0361250:CDS |
| AGCATTGATGCAAGGAAGCT+TGG | 0.443496 | 3_1:+51438121 | Msa0361250:CDS |
| GGTGGTAGTGGAGGAGGGAT+AGG | 0.445402 | 3_1:+51438238 | Msa0361250:CDS |
| GGAGGAGGTGGTGTTGGCGG+AGG | 0.445599 | 3_1:+51438364 | Msa0361250:CDS |
| GGTGGAGGAGGATTTGGAGG+TGG | 0.446757 | 3_1:+51438454 | Msa0361250:CDS |
| CGTCGTCCAGGGTTTGGTGG+AGG | 0.447933 | 3_1:+51438184 | Msa0361250:CDS |
| GGAGGTGGAGGCGGTTTGGG+TGG | 0.448592 | 3_1:+51438319 | Msa0361250:CDS |
| GTCGGTGCTGGTAGTGGACT+AGG | 0.449711 | 3_1:+51438424 | Msa0361250:CDS |
| GGCGGCGGTGGATTCGGTGG+AGG | 0.456574 | 3_1:+51438346 | Msa0361250:CDS |
| GGACTTGGTGGTGCCGGAGC+CGG | 0.457664 | 3_1:+51438487 | Msa0361250:CDS |
| ACCAAATCCACTACCGGCTC+CGG | 0.458927 | 3_1:-51438500 | None:intergenic |
| GCAGGAAGTGGACTTGGAGG+TGG | 0.461315 | 3_1:+51438304 | Msa0361250:CDS |
| TTTGGTGCCGGTGCTGGTGG+AGG | 0.462499 | 3_1:+51438280 | Msa0361250:CDS |
| GGTGGATTCGGTGGAGGAGG+TGG | 0.464009 | 3_1:+51438352 | Msa0361250:CDS |
| GGTGGAGGAGGTGGTGTTGG+CGG | 0.467528 | 3_1:+51438361 | Msa0361250:CDS |
| GGTTTGGGTGGAGGTGGCGG+CGG | 0.468728 | 3_1:+51438331 | Msa0361250:CDS |
| GGAGGAGGATCAGGATTTGG+TGG | 0.476127 | 3_1:+51438397 | Msa0361250:CDS |
| AGTGGACTTGGAGGTGGAGG+CGG | 0.477783 | 3_1:+51438310 | Msa0361250:CDS |
| GGAGGATCAGGATTTGGTGG+TGG | 0.478652 | 3_1:+51438400 | Msa0361250:CDS |
| GGTGGTGGCGGTGGACTTGG+TGG | 0.485302 | 3_1:+51438475 | Msa0361250:CDS |
| GCTGGTGGAGGAGCAGGAAG+TGG | 0.486671 | 3_1:+51438292 | Msa0361250:CDS |
| GGGTTTGGTGGAGGTGCAGG+AGG | 0.487071 | 3_1:+51438193 | Msa0361250:CDS |
| GGTGGCGGCGGTGGATTCGG+TGG | 0.496425 | 3_1:+51438343 | Msa0361250:CDS |
| GGATTTGGTGGTGGAGCTGG+AGG | 0.496714 | 3_1:+51438514 | Msa0361250:CDS |
| TCTGGAGGTGGATTTGGTGC+CGG | 0.500494 | 3_1:+51438268 | Msa0361250:CDS |
| TTTCGTCGTCCAGGGTTTGG+TGG | 0.501728 | 3_1:+51438181 | Msa0361250:CDS |
| GGAAGTGGACTTGGAGGTGG+AGG | 0.506049 | 3_1:+51438307 | Msa0361250:CDS |
| GCCGGTAGTGGATTTGGTGG+TGG | 0.506924 | 3_1:+51438505 | Msa0361250:CDS |
| GTGGCGGTGGTAGTGGAGGA+GGG | 0.508284 | 3_1:+51438233 | Msa0361250:CDS |
| GGATTTGGTGCCGGTGCTGG+TGG | 0.512540 | 3_1:+51438277 | Msa0361250:CDS |
| GGTGGTGGCGGTGGTAGTGG+AGG | 0.514100 | 3_1:+51438229 | Msa0361250:CDS |
| GTGGTGTTGGCGGAGGATCA+GGG | 0.516581 | 3_1:+51438371 | Msa0361250:CDS |
| GGAGGATCAGGGTTTGGAGG+AGG | 0.518862 | 3_1:+51438382 | Msa0361250:CDS |
| GGTAGTGGACTAGGAGGAGG+TGG | 0.526326 | 3_1:+51438433 | Msa0361250:CDS |
| AGTGGAGGAGGGATAGGTGG+TGG | 0.527759 | 3_1:+51438244 | Msa0361250:CDS |
| GCTGGTAGTGGACTAGGAGG+AGG | 0.529707 | 3_1:+51438430 | Msa0361250:CDS |
| GGAGCAGGAAGTGGACTTGG+AGG | 0.531460 | 3_1:+51438301 | Msa0361250:CDS |
| CCTGCACCTCCACCAAACCC+TGG | 0.534557 | 3_1:-51438190 | None:intergenic |
| TCAGGATTTGGTGGTGGTGT+CGG | 0.535845 | 3_1:+51438406 | Msa0361250:CDS |
| TCCTGCTCCTCCACCAGCAC+CGG | 0.537668 | 3_1:-51438287 | None:intergenic |
| AAACTTTCTTTCGTCGTCCA+GGG | 0.556589 | 3_1:+51438173 | Msa0361250:CDS |
| GGAGCCGGTAGTGGATTTGG+TGG | 0.565817 | 3_1:+51438502 | Msa0361250:CDS |
| AGCTTGGGGTTAGTGATAAG+GGG | 0.607938 | 3_1:+51438137 | Msa0361250:CDS |
| GGCGGAGGATCAGGGTTTGG+AGG | 0.608924 | 3_1:+51438379 | Msa0361250:CDS |
| TCCACCACCAAATCCACTAC+CGG | 0.609238 | 3_1:-51438506 | None:intergenic |
| CATTGATGCAAGGAAGCTTG+GGG | 0.640185 | 3_1:+51438123 | Msa0361250:CDS |
| TTTGCAGTAGCATTGATGCA+AGG | 0.645584 | 3_1:+51438113 | Msa0361250:CDS |
| GGTGCTGGTAGTGGACTAGG+AGG | 0.693551 | 3_1:+51438427 | Msa0361250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GTTCTCCTTTTTGTGCTTCT+TGG | + | chr3_1:51438082-51438101 | Msa0361250:CDS | 40.0% |
| !! | TTTGCAGTAGCATTGATGCA+AGG | + | chr3_1:51438113-51438132 | Msa0361250:CDS | 40.0% |
| ! | AAGCTTGGGGTTAGTGATAA+GGG | + | chr3_1:51438136-51438155 | Msa0361250:CDS | 40.0% |
| AAAACTTTCTTTCGTCGTCC+AGG | + | chr3_1:51438172-51438191 | Msa0361250:CDS | 40.0% | |
| AAACTTTCTTTCGTCGTCCA+GGG | + | chr3_1:51438173-51438192 | Msa0361250:CDS | 40.0% | |
| ! | GAGCACCAAGAAGCACAAAA+AGG | - | chr3_1:51438090-51438109 | None:intergenic | 45.0% |
| !! | AGCATTGATGCAAGGAAGCT+TGG | + | chr3_1:51438121-51438140 | Msa0361250:CDS | 45.0% |
| ! | GCATTGATGCAAGGAAGCTT+GGG | + | chr3_1:51438122-51438141 | Msa0361250:CDS | 45.0% |
| CATTGATGCAAGGAAGCTTG+GGG | + | chr3_1:51438123-51438142 | Msa0361250:CDS | 45.0% | |
| ! | GAAGCTTGGGGTTAGTGATA+AGG | + | chr3_1:51438135-51438154 | Msa0361250:CDS | 45.0% |
| ! | AGCTTGGGGTTAGTGATAAG+GGG | + | chr3_1:51438137-51438156 | Msa0361250:CDS | 45.0% |
| TTTGGAGGAGGATCAGGATT+TGG | + | chr3_1:51438394-51438413 | Msa0361250:CDS | 45.0% | |
| TTCTTTCGTCGTCCAGGGTT+TGG | + | chr3_1:51438178-51438197 | Msa0361250:CDS | 50.0% | |
| !! | TCAGGATTTGGTGGTGGTGT+CGG | + | chr3_1:51438406-51438425 | Msa0361250:CDS | 50.0% |
| TCCACCACCAAATCCACTAC+CGG | - | chr3_1:51438509-51438528 | None:intergenic | 50.0% | |
| TTTCGTCGTCCAGGGTTTGG+TGG | + | chr3_1:51438181-51438200 | Msa0361250:CDS | 55.0% | |
| !! | TCTGGAGGTGGATTTGGTGC+CGG | + | chr3_1:51438268-51438287 | Msa0361250:CDS | 55.0% |
| TCAGGGTTTGGAGGAGGATC+AGG | + | chr3_1:51438388-51438407 | Msa0361250:CDS | 55.0% | |
| GGAGGAGGATCAGGATTTGG+TGG | + | chr3_1:51438397-51438416 | Msa0361250:CDS | 55.0% | |
| !! | GGAGGATCAGGATTTGGTGG+TGG | + | chr3_1:51438400-51438419 | Msa0361250:CDS | 55.0% |
| !! | ACCAAATCCACTACCGGCTC+CGG | - | chr3_1:51438503-51438522 | None:intergenic | 55.0% |
| !! | AGTGGATTTGGTGGTGGAGC+TGG | + | chr3_1:51438511-51438530 | Msa0361250:CDS | 55.0% |
| ! | TTTGGTGGAGGTGCAGGAGG+AGG | + | chr3_1:51438196-51438215 | Msa0361250:CDS | 60.0% |
| !! | GCAGGAGGAGGTGGTGGTTT+TGG | + | chr3_1:51438208-51438227 | Msa0361250:CDS | 60.0% |
| !!! | GGAGGAGGTGGTGGTTTTGG+TGG | + | chr3_1:51438211-51438230 | Msa0361250:CDS | 60.0% |
| !!! | GGAGGTGGTGGTTTTGGTGG+TGG | + | chr3_1:51438214-51438233 | Msa0361250:CDS | 60.0% |
| !!! | GGTGGTGGTTTTGGTGGTGG+CGG | + | chr3_1:51438217-51438236 | Msa0361250:CDS | 60.0% |
| !! | TTTGGTGGTGGCGGTGGTAG+TGG | + | chr3_1:51438226-51438245 | Msa0361250:CDS | 60.0% |
| !! | GGTGGTAGTGGAGGAGGGAT+AGG | + | chr3_1:51438238-51438257 | Msa0361250:CDS | 60.0% |
| !! | GGTAGTGGAGGAGGGATAGG+TGG | + | chr3_1:51438241-51438260 | Msa0361250:CDS | 60.0% |
| AGTGGAGGAGGGATAGGTGG+TGG | + | chr3_1:51438244-51438263 | Msa0361250:CDS | 60.0% | |
| !! | ATAGGTGGTGGCTCTGGAGG+TGG | + | chr3_1:51438256-51438275 | Msa0361250:CDS | 60.0% |
| !! | GGTGGCTCTGGAGGTGGATT+TGG | + | chr3_1:51438262-51438281 | Msa0361250:CDS | 60.0% |
| ! | GGAGGAGCAGGAAGTGGACT+TGG | + | chr3_1:51438298-51438317 | Msa0361250:CDS | 60.0% |
| ! | GGAGCAGGAAGTGGACTTGG+AGG | + | chr3_1:51438301-51438320 | Msa0361250:CDS | 60.0% |
| ! | GCAGGAAGTGGACTTGGAGG+TGG | + | chr3_1:51438304-51438323 | Msa0361250:CDS | 60.0% |
| ! | GGAAGTGGACTTGGAGGTGG+AGG | + | chr3_1:51438307-51438326 | Msa0361250:CDS | 60.0% |
| ! | AGTGGACTTGGAGGTGGAGG+CGG | + | chr3_1:51438310-51438329 | Msa0361250:CDS | 60.0% |
| ACTTGGAGGTGGAGGCGGTT+TGG | + | chr3_1:51438315-51438334 | Msa0361250:CDS | 60.0% | |
| CTTGGAGGTGGAGGCGGTTT+GGG | + | chr3_1:51438316-51438335 | Msa0361250:CDS | 60.0% | |
| TTCGGTGGAGGAGGTGGTGT+TGG | + | chr3_1:51438358-51438377 | Msa0361250:CDS | 60.0% | |
| !! | GTGGTGTTGGCGGAGGATCA+GGG | + | chr3_1:51438371-51438390 | Msa0361250:CDS | 60.0% |
| GTTGGCGGAGGATCAGGGTT+TGG | + | chr3_1:51438376-51438395 | Msa0361250:CDS | 60.0% | |
| GGAGGATCAGGGTTTGGAGG+AGG | + | chr3_1:51438382-51438401 | Msa0361250:CDS | 60.0% | |
| !! | TTTGGTGGTGGTGTCGGTGC+TGG | + | chr3_1:51438412-51438431 | Msa0361250:CDS | 60.0% |
| !! | GTCGGTGCTGGTAGTGGACT+AGG | + | chr3_1:51438424-51438443 | Msa0361250:CDS | 60.0% |
| !! | GGTGCTGGTAGTGGACTAGG+AGG | + | chr3_1:51438427-51438446 | Msa0361250:CDS | 60.0% |
| !! | GCTGGTAGTGGACTAGGAGG+AGG | + | chr3_1:51438430-51438449 | Msa0361250:CDS | 60.0% |
| !! | GGTAGTGGACTAGGAGGAGG+TGG | + | chr3_1:51438433-51438452 | Msa0361250:CDS | 60.0% |
| !! | AGTGGACTAGGAGGAGGTGG+TGG | + | chr3_1:51438436-51438455 | Msa0361250:CDS | 60.0% |
| !! | GGAGGTGGTGGAGGAGGATT+TGG | + | chr3_1:51438448-51438467 | Msa0361250:CDS | 60.0% |
| !! | GGTGGTGGAGGAGGATTTGG+AGG | + | chr3_1:51438451-51438470 | Msa0361250:CDS | 60.0% |
| GGTGGAGGAGGATTTGGAGG+TGG | + | chr3_1:51438454-51438473 | Msa0361250:CDS | 60.0% | |
| GGAGGAGGATTTGGAGGTGG+TGG | + | chr3_1:51438457-51438476 | Msa0361250:CDS | 60.0% | |
| ! | GGAGGATTTGGAGGTGGTGG+TGG | + | chr3_1:51438460-51438479 | Msa0361250:CDS | 60.0% |
| !! | GGATTTGGAGGTGGTGGTGG+CGG | + | chr3_1:51438463-51438482 | Msa0361250:CDS | 60.0% |
| !! | GGAGCCGGTAGTGGATTTGG+TGG | + | chr3_1:51438502-51438521 | Msa0361250:CDS | 60.0% |
| !! | GCCGGTAGTGGATTTGGTGG+TGG | + | chr3_1:51438505-51438524 | Msa0361250:CDS | 60.0% |
| !! | GGATTTGGTGGTGGAGCTGG+AGG | + | chr3_1:51438514-51438533 | Msa0361250:CDS | 60.0% |
| !! | TTTGGTGGTGGAGCTGGAGG+TGG | + | chr3_1:51438517-51438536 | Msa0361250:CDS | 60.0% |
| !! | CGTCGTCCAGGGTTTGGTGG+AGG | + | chr3_1:51438184-51438203 | Msa0361250:CDS | 65.0% |
| CCTGCACCTCCACCAAACCC+TGG | - | chr3_1:51438193-51438212 | None:intergenic | 65.0% | |
| !! | CCAGGGTTTGGTGGAGGTGC+AGG | + | chr3_1:51438190-51438209 | Msa0361250:CDS | 65.0% |
| !! | GGGTTTGGTGGAGGTGCAGG+AGG | + | chr3_1:51438193-51438212 | Msa0361250:CDS | 65.0% |
| !!! | GGTGGTTTTGGTGGTGGCGG+TGG | + | chr3_1:51438220-51438239 | Msa0361250:CDS | 65.0% |
| !! | GTGGCGGTGGTAGTGGAGGA+GGG | + | chr3_1:51438233-51438252 | Msa0361250:CDS | 65.0% |
| ! | GGAGGGATAGGTGGTGGCTC+TGG | + | chr3_1:51438250-51438269 | Msa0361250:CDS | 65.0% |
| !! | GGGATAGGTGGTGGCTCTGG+AGG | + | chr3_1:51438253-51438272 | Msa0361250:CDS | 65.0% |
| !! | GGTGGATTTGGTGCCGGTGC+TGG | + | chr3_1:51438274-51438293 | Msa0361250:CDS | 65.0% |
| !! | GGATTTGGTGCCGGTGCTGG+TGG | + | chr3_1:51438277-51438296 | Msa0361250:CDS | 65.0% |
| !! | TTTGGTGCCGGTGCTGGTGG+AGG | + | chr3_1:51438280-51438299 | Msa0361250:CDS | 65.0% |
| TCCTGCTCCTCCACCAGCAC+CGG | - | chr3_1:51438290-51438309 | None:intergenic | 65.0% | |
| GCTGGTGGAGGAGCAGGAAG+TGG | + | chr3_1:51438292-51438311 | Msa0361250:CDS | 65.0% | |
| !! | GGTGGATTCGGTGGAGGAGG+TGG | + | chr3_1:51438352-51438371 | Msa0361250:CDS | 65.0% |
| ! | GGTGGAGGAGGTGGTGTTGG+CGG | + | chr3_1:51438361-51438380 | Msa0361250:CDS | 65.0% |
| !! | GGTGGTGTTGGCGGAGGATC+AGG | + | chr3_1:51438370-51438389 | Msa0361250:CDS | 65.0% |
| GGCGGAGGATCAGGGTTTGG+AGG | + | chr3_1:51438379-51438398 | Msa0361250:CDS | 65.0% | |
| !! | GGTGGTGTCGGTGCTGGTAG+TGG | + | chr3_1:51438418-51438437 | Msa0361250:CDS | 65.0% |
| ! | GGACTAGGAGGAGGTGGTGG+AGG | + | chr3_1:51438439-51438458 | Msa0361250:CDS | 65.0% |
| !! | CTAGGAGGAGGTGGTGGAGG+AGG | + | chr3_1:51438442-51438461 | Msa0361250:CDS | 65.0% |
| !! | TTTGGAGGTGGTGGTGGCGG+TGG | + | chr3_1:51438466-51438485 | Msa0361250:CDS | 65.0% |
| !! | GCCGGAGCCGGTAGTGGATT+TGG | + | chr3_1:51438499-51438518 | Msa0361250:CDS | 65.0% |
| GGTGGAGCTGGAGGTGGAGT+TGG | + | chr3_1:51438523-51438542 | Msa0361250:CDS | 65.0% | |
| GGAGCTGGAGGTGGAGTTGG+AGG | + | chr3_1:51438526-51438545 | Msa0361250:CDS | 65.0% | |
| GCTGGAGGTGGAGTTGGAGG+TGG | + | chr3_1:51438529-51438548 | Msa0361250:CDS | 65.0% | |
| ! | GGTGGAGGTGCAGGAGGAGG+TGG | + | chr3_1:51438199-51438218 | Msa0361250:CDS | 70.0% |
| ! | GGAGGTGCAGGAGGAGGTGG+TGG | + | chr3_1:51438202-51438221 | Msa0361250:CDS | 70.0% |
| !! | GGTGGTGGCGGTGGTAGTGG+AGG | + | chr3_1:51438229-51438248 | Msa0361250:CDS | 70.0% |
| !! | GGTGGCGGTGGTAGTGGAGG+AGG | + | chr3_1:51438232-51438251 | Msa0361250:CDS | 70.0% |
| ! | GGAGGTGGAGGCGGTTTGGG+TGG | + | chr3_1:51438319-51438338 | Msa0361250:CDS | 70.0% |
| ! | GGTGGAGGCGGTTTGGGTGG+AGG | + | chr3_1:51438322-51438341 | Msa0361250:CDS | 70.0% |
| ! | GGAGGCGGTTTGGGTGGAGG+TGG | + | chr3_1:51438325-51438344 | Msa0361250:CDS | 70.0% |
| ! | GGCGGTTTGGGTGGAGGTGG+CGG | + | chr3_1:51438328-51438347 | Msa0361250:CDS | 70.0% |
| ! | GGTTTGGGTGGAGGTGGCGG+CGG | + | chr3_1:51438331-51438350 | Msa0361250:CDS | 70.0% |
| ! | GGAGGTGGCGGCGGTGGATT+CGG | + | chr3_1:51438340-51438359 | Msa0361250:CDS | 70.0% |
| !! | GGCGGTGGATTCGGTGGAGG+AGG | + | chr3_1:51438349-51438368 | Msa0361250:CDS | 70.0% |
| !! | GGAGGAGGTGGTGTTGGCGG+AGG | + | chr3_1:51438364-51438383 | Msa0361250:CDS | 70.0% |
| !! | GGTGGTGGTGGCGGTGGACT+TGG | + | chr3_1:51438472-51438491 | Msa0361250:CDS | 70.0% |
| !! | GGTGGTGGCGGTGGACTTGG+TGG | + | chr3_1:51438475-51438494 | Msa0361250:CDS | 70.0% |
| !! | GGCGGTGGACTTGGTGGTGC+CGG | + | chr3_1:51438481-51438500 | Msa0361250:CDS | 70.0% |
| !! | GGACTTGGTGGTGCCGGAGC+CGG | + | chr3_1:51438487-51438506 | Msa0361250:CDS | 70.0% |
| !! | GCCGGTGCTGGTGGAGGAGC+AGG | + | chr3_1:51438286-51438305 | Msa0361250:CDS | 75.0% |
| ! | TTGGGTGGAGGTGGCGGCGG+TGG | + | chr3_1:51438334-51438353 | Msa0361250:CDS | 75.0% |
| ! | GGTGGCGGCGGTGGATTCGG+TGG | + | chr3_1:51438343-51438362 | Msa0361250:CDS | 75.0% |
| !! | GGCGGCGGTGGATTCGGTGG+AGG | + | chr3_1:51438346-51438365 | Msa0361250:CDS | 75.0% |
| ! | GGTGGTGCCGGAGCCGGTAG+TGG | + | chr3_1:51438493-51438512 | Msa0361250:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 51438064 | 51438561 | 51438064 | ID=Msa0361250;Name=Msa0361250 |
| chr3_1 | mRNA | 51438064 | 51438561 | 51438064 | ID=Msa0361250-mRNA-1;Parent=Msa0361250;Name=Msa0361250-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|-1|0|1|-1|1|1|0|165 |
| chr3_1 | exon | 51438064 | 51438561 | 51438064 | ID=Msa0361250-mRNA-1:exon:9164;Parent=Msa0361250-mRNA-1 |
| chr3_1 | CDS | 51438064 | 51438561 | 51438064 | ID=Msa0361250-mRNA-1:cds;Parent=Msa0361250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
