Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365020 | XP_003604031.1 | 89.286 | 196 | 7 | 2 | 1 | 196 | 1 | 182 | 1.05e-107 | 321 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365020 | G7J8H3 | 89.286 | 196 | 7 | 2 | 1 | 196 | 1 | 182 | 5.03e-108 | 321 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa1365020 | 0.824112 | 9.631045e-54 | -8.615850e-47 |
| Msa0017120 | Msa1365020 | 0.821998 | 2.996122e-53 | -8.615850e-47 |
| Msa0065390 | Msa1365020 | 0.810178 | 1.311463e-50 | -8.615850e-47 |
| Msa0077410 | Msa1365020 | 0.849037 | 4.180726e-60 | -8.615850e-47 |
| Msa0094420 | Msa1365020 | 0.800894 | 1.163607e-48 | -8.615850e-47 |
| Msa0100570 | Msa1365020 | 0.803952 | 2.726490e-49 | -8.615850e-47 |
| Msa0110710 | Msa1365020 | 0.812876 | 3.399534e-51 | -8.615850e-47 |
| Msa1350670 | Msa1365020 | 0.815772 | 7.790622e-52 | -8.615850e-47 |
| Msa1354040 | Msa1365020 | 0.803587 | 3.246417e-49 | -8.615850e-47 |
| Msa1355400 | Msa1365020 | 0.847871 | 8.787470e-60 | -8.615850e-47 |
| Msa1365020 | Msa1367410 | 0.901411 | 2.753144e-78 | -8.615850e-47 |
| Msa1365020 | Msa1381130 | 0.800949 | 1.133659e-48 | -8.615850e-47 |
| Msa1365020 | Msa1382720 | 0.812126 | 4.958290e-51 | -8.615850e-47 |
| Msa1365020 | Msa1405770 | 0.807465 | 4.987904e-50 | -8.615850e-47 |
| Msa1365020 | Msa1417650 | 0.914442 | 1.907029e-84 | -8.615850e-47 |
| Msa1365020 | Msa1420060 | 0.803486 | 3.407285e-49 | -8.615850e-47 |
| Msa1365020 | Msa1425060 | 0.813045 | 3.122780e-51 | -8.615850e-47 |
| Msa1365020 | Msa1434020 | 0.849980 | 2.282429e-60 | -8.615850e-47 |
| Msa1365020 | Msa1435040 | 0.813391 | 2.621466e-51 | -8.615850e-47 |
| Msa1365020 | Msa1435050 | 0.824534 | 7.660911e-54 | -8.615850e-47 |
| Msa1365020 | Msa1439670 | 0.833463 | 5.256093e-56 | -8.615850e-47 |
| Msa1365020 | Msa1439680 | 0.819674 | 1.026190e-52 | -8.615850e-47 |
| Msa0614230 | Msa1365020 | 0.817847 | 2.666654e-52 | -8.615850e-47 |
| Msa0633750 | Msa1365020 | 0.851060 | 1.134617e-60 | -8.615850e-47 |
| Msa0634270 | Msa1365020 | 0.831914 | 1.273850e-55 | -8.615850e-47 |
| Msa0638710 | Msa1365020 | 0.805021 | 1.632482e-49 | -8.615850e-47 |
| Msa0640390 | Msa1365020 | 0.823570 | 1.289721e-53 | -8.615850e-47 |
| Msa0640880 | Msa1365020 | 0.832237 | 1.060061e-55 | -8.615850e-47 |
| Msa0640990 | Msa1365020 | 0.819676 | 1.024853e-52 | -8.615850e-47 |
| Msa0641620 | Msa1365020 | 0.844855 | 5.837204e-59 | -8.615850e-47 |
| Msa0642650 | Msa1365020 | 0.812497 | 4.116507e-51 | -8.615850e-47 |
| Msa0642910 | Msa1365020 | 0.825720 | 4.019651e-54 | -8.615850e-47 |
| Msa0665910 | Msa1365020 | -0.814652 | 1.381170e-51 | -8.615850e-47 |
| Msa0667970 | Msa1365020 | 0.806869 | 6.670230e-50 | -8.615850e-47 |
| Msa0672110 | Msa1365020 | 0.813028 | 3.148581e-51 | -8.615850e-47 |
| Msa0678890 | Msa1365020 | 0.864729 | 9.858732e-65 | -8.615850e-47 |
| Msa0680150 | Msa1365020 | 0.801578 | 8.429064e-49 | -8.615850e-47 |
| Msa0681890 | Msa1365020 | 0.821735 | 3.447701e-53 | -8.615850e-47 |
| Msa0688540 | Msa1365020 | 0.805775 | 1.134239e-49 | -8.615850e-47 |
| Msa0700910 | Msa1365020 | 0.812024 | 5.218961e-51 | -8.615850e-47 |
| Msa0716790 | Msa1365020 | 0.815632 | 8.370986e-52 | -8.615850e-47 |
| Msa0720270 | Msa1365020 | 0.830054 | 3.645513e-55 | -8.615850e-47 |
| Msa0722940 | Msa1365020 | 0.846407 | 2.215230e-59 | -8.615850e-47 |
| Msa0723150 | Msa1365020 | 0.851118 | 1.093172e-60 | -8.615850e-47 |
| Msa0760840 | Msa1365020 | 0.813454 | 2.539319e-51 | -8.615850e-47 |
| Msa0799210 | Msa1365020 | 0.837897 | 3.962539e-57 | -8.615850e-47 |
| Msa0803130 | Msa1365020 | 0.861372 | 1.074609e-63 | -8.615850e-47 |
| Msa0841490 | Msa1365020 | 0.861943 | 7.188691e-64 | -8.615850e-47 |
| Msa0125280 | Msa1365020 | 0.822565 | 2.212804e-53 | -8.615850e-47 |
| Msa0134130 | Msa1365020 | 0.802374 | 5.782418e-49 | -8.615850e-47 |
| Msa0135980 | Msa1365020 | 0.816396 | 5.649641e-52 | -8.615850e-47 |
| Msa0139900 | Msa1365020 | 0.833674 | 4.655622e-56 | -8.615850e-47 |
| Msa0141670 | Msa1365020 | 0.814264 | 1.682927e-51 | -8.615850e-47 |
| Msa0143970 | Msa1365020 | 0.803182 | 3.938511e-49 | -8.615850e-47 |
| Msa0146470 | Msa1365020 | 0.819819 | 9.506592e-53 | -8.615850e-47 |
| Msa0157020 | Msa1365020 | 0.822036 | 2.936415e-53 | -8.615850e-47 |
| Msa0206120 | Msa1365020 | 0.812510 | 4.089044e-51 | -8.615850e-47 |
| Msa0207180 | Msa1365020 | 0.813780 | 2.152804e-51 | -8.615850e-47 |
| Msa0230400 | Msa1365020 | 0.820368 | 7.117369e-53 | -8.615850e-47 |
| Msa1232860 | Msa1365020 | 0.819689 | 1.018049e-52 | -8.615850e-47 |
| Msa1235890 | Msa1365020 | 0.802014 | 6.857930e-49 | -8.615850e-47 |
| Msa1258810 | Msa1365020 | 0.823668 | 1.223802e-53 | -8.615850e-47 |
| Msa1272330 | Msa1365020 | 0.823346 | 1.455224e-53 | -8.615850e-47 |
| Msa1313460 | Msa1365020 | 0.804533 | 2.063423e-49 | -8.615850e-47 |
| Msa1315980 | Msa1365020 | 0.816407 | 5.618873e-52 | -8.615850e-47 |
| Msa1330240 | Msa1365020 | 0.806520 | 7.903446e-50 | -8.615850e-47 |
| Msa0370600 | Msa1365020 | 0.850193 | 1.989085e-60 | -8.615850e-47 |
| Msa0378340 | Msa1365020 | 0.807603 | 4.662351e-50 | -8.615850e-47 |
| Msa0380060 | Msa1365020 | 0.833053 | 6.649083e-56 | -8.615850e-47 |
| Msa0382290 | Msa1365020 | 0.827430 | 1.571106e-54 | -8.615850e-47 |
| Msa0398590 | Msa1365020 | 0.840312 | 9.378601e-58 | -8.615850e-47 |
| Msa0408630 | Msa1365020 | 0.804824 | 1.794825e-49 | -8.615850e-47 |
| Msa0408640 | Msa1365020 | 0.866574 | 2.581462e-65 | -8.615850e-47 |
| Msa0417630 | Msa1365020 | 0.807169 | 5.763435e-50 | -8.615850e-47 |
| Msa0418200 | Msa1365020 | 0.847206 | 1.339287e-59 | -8.615850e-47 |
| Msa0418220 | Msa1365020 | 0.815502 | 8.945788e-52 | -8.615850e-47 |
| Msa0427690 | Msa1365020 | 0.805684 | 1.185065e-49 | -8.615850e-47 |
| Msa0429270 | Msa1365020 | 0.834492 | 2.905011e-56 | -8.615850e-47 |
| Msa0431800 | Msa1365020 | 0.809819 | 1.566807e-50 | -8.615850e-47 |
| Msa0457870 | Msa1365020 | 0.817250 | 3.635739e-52 | -8.615850e-47 |
| Msa0464540 | Msa1365020 | 0.836735 | 7.862474e-57 | -8.615850e-47 |
| Msa0464630 | Msa1365020 | 0.837092 | 6.373394e-57 | -8.615850e-47 |
| Msa0990520 | Msa1365020 | 0.803339 | 3.655100e-49 | -8.615850e-47 |
| Msa1002040 | Msa1365020 | 0.803161 | 3.978233e-49 | -8.615850e-47 |
| Msa1004500 | Msa1365020 | 0.832554 | 8.845079e-56 | -8.615850e-47 |
| Msa1004520 | Msa1365020 | 0.821218 | 4.537771e-53 | -8.615850e-47 |
| Msa1014270 | Msa1365020 | 0.828300 | 9.706407e-55 | -8.615850e-47 |
| Msa1022650 | Msa1365020 | 0.802700 | 4.953529e-49 | -8.615850e-47 |
| Msa1027790 | Msa1365020 | 0.828923 | 6.861928e-55 | -8.615850e-47 |
| Msa1041530 | Msa1365020 | 0.808818 | 2.569177e-50 | -8.615850e-47 |
| Msa1045880 | Msa1365020 | 0.814128 | 1.803891e-51 | -8.615850e-47 |
| Msa1045970 | Msa1365020 | 0.819334 | 1.226796e-52 | -8.615850e-47 |
| Msa1046870 | Msa1365020 | 0.842370 | 2.694619e-58 | -8.615850e-47 |
| Msa1048710 | Msa1365020 | 0.803066 | 4.162216e-49 | -8.615850e-47 |
| Msa1061500 | Msa1365020 | 0.813272 | 2.783530e-51 | -8.615850e-47 |
| Msa1081570 | Msa1365020 | 0.801065 | 1.073609e-48 | -8.615850e-47 |
| Msa0249270 | Msa1365020 | 0.819001 | 1.460787e-52 | -8.615850e-47 |
| Msa0274780 | Msa1365020 | 0.823451 | 1.375451e-53 | -8.615850e-47 |
| Msa0297920 | Msa1365020 | 0.808899 | 2.468372e-50 | -8.615850e-47 |
| Msa0315480 | Msa1365020 | 0.822129 | 2.793637e-53 | -8.615850e-47 |
| Msa0351510 | Msa1365020 | 0.836298 | 1.015901e-56 | -8.615850e-47 |
| Msa0361250 | Msa1365020 | 0.854908 | 8.995034e-62 | -8.615850e-47 |
| Msa0361260 | Msa1365020 | 0.873177 | 1.799519e-67 | -8.615850e-47 |
| Msa1112610 | Msa1365020 | 0.833126 | 6.377139e-56 | -8.615850e-47 |
| Msa1127140 | Msa1365020 | 0.803793 | 2.941651e-49 | -8.615850e-47 |
| Msa1130690 | Msa1365020 | 0.807022 | 6.190410e-50 | -8.615850e-47 |
| Msa1131020 | Msa1365020 | 0.802646 | 5.081829e-49 | -8.615850e-47 |
| Msa1134400 | Msa1365020 | 0.821507 | 3.892428e-53 | -8.615850e-47 |
| Msa1197110 | Msa1365020 | 0.812972 | 3.239148e-51 | -8.615850e-47 |
| Msa1200920 | Msa1365020 | 0.826705 | 2.342383e-54 | -8.615850e-47 |
| Msa1219250 | Msa1365020 | 0.800355 | 1.498575e-48 | -8.615850e-47 |
| Msa0510230 | Msa1365020 | 0.803166 | 3.968255e-49 | -8.615850e-47 |
| Msa0510440 | Msa1365020 | 0.819300 | 1.248468e-52 | -8.615850e-47 |
| Msa0518520 | Msa1365020 | 0.808787 | 2.608261e-50 | -8.615850e-47 |
| Msa0519200 | Msa1365020 | 0.839192 | 1.835807e-57 | -8.615850e-47 |
| Msa0524210 | Msa1365020 | 0.911129 | 8.620525e-83 | -8.615850e-47 |
| Msa0528940 | Msa1365020 | 0.829289 | 5.594046e-55 | -8.615850e-47 |
| Msa0532840 | Msa1365020 | 0.804872 | 1.753273e-49 | -8.615850e-47 |
| Msa0533010 | Msa1365020 | 0.802419 | 5.661219e-49 | -8.615850e-47 |
| Msa0537270 | Msa1365020 | 0.846111 | 2.667230e-59 | -8.615850e-47 |
| Msa0538570 | Msa1365020 | 0.845895 | 3.053160e-59 | -8.615850e-47 |
| Msa0543850 | Msa1365020 | 0.844471 | 7.405019e-59 | -8.615850e-47 |
| Msa0544220 | Msa1365020 | 0.815056 | 1.124065e-51 | -8.615850e-47 |
| Msa0547050 | Msa1365020 | 0.851940 | 6.397264e-61 | -8.615850e-47 |
| Msa0561510 | Msa1365020 | 0.800662 | 1.297160e-48 | -8.615850e-47 |
| Msa0585730 | Msa1365020 | 0.812438 | 4.239739e-51 | -8.615850e-47 |
| Msa0593710 | Msa1365020 | 0.858642 | 7.158852e-63 | -8.615850e-47 |
| Msa0594390 | Msa1365020 | 0.846849 | 1.676913e-59 | -8.615850e-47 |
| Msa0599690 | Msa1365020 | 0.841791 | 3.836283e-58 | -8.615850e-47 |
| Msa0600390 | Msa1365020 | 0.817115 | 3.898228e-52 | -8.615850e-47 |
| Msa0601110 | Msa1365020 | 0.856030 | 4.237525e-62 | -8.615850e-47 |
| Msa0601120 | Msa1365020 | 0.853317 | 2.588836e-61 | -8.615850e-47 |
| Msa0601780 | Msa1365020 | 0.830651 | 2.603900e-55 | -8.615850e-47 |
| Msa0843290 | Msa1365020 | 0.841937 | 3.509811e-58 | -8.615850e-47 |
| Msa0872310 | Msa1365020 | 0.802575 | 5.255823e-49 | -8.615850e-47 |
| Msa0877420 | Msa1365020 | 0.824702 | 6.995909e-54 | -8.615850e-47 |
| Msa0886880 | Msa1365020 | 0.812298 | 4.549065e-51 | -8.615850e-47 |
| Msa0905550 | Msa1365020 | 0.804939 | 1.697820e-49 | -8.615850e-47 |
| Msa0930330 | Msa1365020 | 0.809691 | 1.669991e-50 | -8.615850e-47 |
| Msa0931480 | Msa1365020 | 0.850363 | 1.781976e-60 | -8.615850e-47 |
| Msa0931610 | Msa1365020 | 0.812361 | 4.407305e-51 | -8.615850e-47 |
| Msa0937550 | Msa1365020 | 0.812924 | 3.319321e-51 | -8.615850e-47 |
| Msa0942730 | Msa1365020 | 0.805824 | 1.107640e-49 | -8.615850e-47 |
| Msa0951460 | Msa1365020 | 0.822798 | 1.953936e-53 | -8.615850e-47 |
| Msa0951960 | Msa1365020 | 0.812486 | 4.137601e-51 | -8.615850e-47 |
| Msa0955300 | Msa1365020 | 0.802330 | 5.905992e-49 | -8.615850e-47 |
| Msa0958020 | Msa1365020 | 0.805651 | 1.204299e-49 | -8.615850e-47 |
| Msa0974750 | Msa1365020 | 0.816879 | 4.404468e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365020 | MtrunA17_Chr3g0145511 | 89.286 | 196 | 7 | 2 | 1 | 196 | 1 | 182 | 9.69e-112 | 321 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365020 | AT2G16630.1 | 46.067 | 178 | 75 | 2 | 7 | 164 | 9 | 185 | 1.31e-50 | 167 |
Find 63 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGCCAATGTTGGTGGTGG+TGG | 0.190043 | tig0018197:+67254 | None:intergenic |
| ATGGTGGAAGTTGTGGCATT+GGG | 0.241279 | tig0018197:+67195 | None:intergenic |
| GATGGACATGCTGAAGCTTC+TGG | 0.264920 | tig0018197:+67155 | None:intergenic |
| AATGTTGGTGGTGGTGGGGA+TGG | 0.300659 | tig0018197:+67260 | None:intergenic |
| TTCTCATTGCATTTGCCAAC+TGG | 0.329560 | tig0018197:-68989 | Msa1365020:five_prime_UTR |
| CAAGAGAAGAAACAACAAAT+TGG | 0.341479 | tig0018197:-67514 | Msa1365020:CDS |
| GTGCCAATGTTGGTGGTGGT+GGG | 0.345243 | tig0018197:+67255 | None:intergenic |
| AAAATCCAAGACTCATGTTT+AGG | 0.352973 | tig0018197:-67367 | Msa1365020:CDS |
| TCTAACATTCATGGAGTTGC+CGG | 0.354500 | tig0018197:-68960 | Msa1365020:exon |
| ATTCTTTCAGTGGCCATTGA+TGG | 0.372198 | tig0018197:-68911 | Msa1365020:CDS |
| ATGTTGGTGGTGGTGGGGAT+GGG | 0.374966 | tig0018197:+67261 | None:intergenic |
| GAAGAAACAACAAATTGGTT+TGG | 0.375618 | tig0018197:-67509 | Msa1365020:CDS |
| TTGGCAAATGCAATGAGAAA+TGG | 0.378536 | tig0018197:+68993 | None:intergenic |
| TGGACTTCTTCTAACATTCA+TGG | 0.382090 | tig0018197:-68969 | Msa1365020:exon |
| AATGGTGGAAGTTGTGGCAT+TGG | 0.390842 | tig0018197:+67194 | None:intergenic |
| AGTTAGATCTCACCATTAAC+AGG | 0.396284 | tig0018197:+68809 | None:intergenic |
| ATCTGCCTTTGTTCCATCAA+TGG | 0.412809 | tig0018197:+68898 | None:intergenic |
| CATGTCTCGGGAAATAATAA+TGG | 0.419703 | tig0018197:-67434 | Msa1365020:CDS |
| AGCTATACAATGAGGTTTGA+TGG | 0.433754 | tig0018197:-67485 | Msa1365020:CDS |
| TGGTGGTGGTGGGGATGGGT+TGG | 0.440191 | tig0018197:+67265 | None:intergenic |
| ATGTGGAGGAGGAGAAGAAA+TGG | 0.446281 | tig0018197:+67229 | None:intergenic |
| TGGCAAATGCAATGAGAAAT+GGG | 0.458534 | tig0018197:+68994 | None:intergenic |
| TGCCAATGTTGGTGGTGGTG+GGG | 0.465868 | tig0018197:+67256 | None:intergenic |
| TGGTTGTTCTGCACATGTCT+CGG | 0.469204 | tig0018197:-67447 | Msa1365020:CDS |
| TTTGATGGAGCACCAGACTT+AGG | 0.482264 | tig0018197:-67470 | Msa1365020:CDS |
| CAGTATTGCATAGGTTGAGC+AGG | 0.486574 | tig0018197:+67299 | None:intergenic |
| AACATCCTAAACATGAGTCT+TGG | 0.489630 | tig0018197:+67362 | None:intergenic |
| GGTTGTTCTGCACATGTCTC+GGG | 0.491091 | tig0018197:-67446 | Msa1365020:CDS |
| TGGTGGAAGTTGTGGCATTG+GGG | 0.492351 | tig0018197:+67196 | None:intergenic |
| GGTGGTGCCAATGTTGGTGG+TGG | 0.493754 | tig0018197:+67251 | None:intergenic |
| TGTGGAGGAGGAGAAGAAAT+GGG | 0.494289 | tig0018197:+67230 | None:intergenic |
| GTTGCAAACAAAAGCTTCTC+CGG | 0.497432 | tig0018197:+68941 | None:intergenic |
| ATCCCCACCACCACCAACAT+TGG | 0.499035 | tig0018197:-67258 | Msa1365020:CDS |
| GCACCTTCACCACAACTCAT+TGG | 0.503873 | tig0018197:+67401 | None:intergenic |
| TGTCATGTAGTGACAACAAT+GGG | 0.513625 | tig0018197:-67550 | Msa1365020:CDS |
| CATGTTTAGGATGTTTGACA+TGG | 0.532543 | tig0018197:-67354 | Msa1365020:CDS |
| GCAGAACAACCACCTAAGTC+TGG | 0.541167 | tig0018197:+67458 | None:intergenic |
| CAGTGATAAACTTACTGTGA+TGG | 0.555843 | tig0018197:+67137 | None:intergenic |
| TAGGTTGAGCAGGCTGAGCA+AGG | 0.559848 | tig0018197:+67309 | None:intergenic |
| ATGAGTTGTGGTGAAGGTGC+TGG | 0.561315 | tig0018197:-67398 | Msa1365020:CDS |
| ATGGGTGGTGCCAATGTTGG+TGG | 0.567999 | tig0018197:+67248 | None:intergenic |
| GATGTTGAGCAGTATTGCAT+AGG | 0.569435 | tig0018197:+67290 | None:intergenic |
| AAAATCATTGGTGGTAATGG+TGG | 0.570401 | tig0018197:+67179 | None:intergenic |
| GGTGGAAGTTGTGGCATTGG+GGG | 0.571199 | tig0018197:+67197 | None:intergenic |
| TTTGTGATCAATGCAAAGAC+GGG | 0.581900 | tig0018197:-68853 | Msa1365020:CDS |
| GGTAGGTTGAAATGTGGAGG+AGG | 0.582342 | tig0018197:+67218 | None:intergenic |
| GGTGGTAATGGTGGAAGTTG+TGG | 0.582776 | tig0018197:+67188 | None:intergenic |
| ATTTGTGATCAATGCAAAGA+CGG | 0.604556 | tig0018197:-68854 | Msa1365020:CDS |
| TGAGCAGGCTGAGCAAGGAG+TGG | 0.605851 | tig0018197:+67314 | None:intergenic |
| GAAATGGGTGGTGCCAATGT+TGG | 0.606306 | tig0018197:+67245 | None:intergenic |
| AATGTTAGAAGAAGTCCAGT+TGG | 0.611637 | tig0018197:+68974 | None:intergenic |
| GATGGAGCACCAGACTTAGG+TGG | 0.611734 | tig0018197:-67467 | Msa1365020:CDS |
| GGACCAATGAGTTGTGGTGA+AGG | 0.613433 | tig0018197:-67404 | Msa1365020:CDS |
| AGTGGCCATTGATGGAACAA+AGG | 0.622178 | tig0018197:-68903 | Msa1365020:CDS |
| GGTTTGGAAGCTATACAATG+AGG | 0.622859 | tig0018197:-67493 | Msa1365020:CDS |
| GGAAATAATAATGGACAAGG+AGG | 0.636968 | tig0018197:-67425 | Msa1365020:CDS |
| CTGTCATGTAGTGACAACAA+TGG | 0.641151 | tig0018197:-67551 | Msa1365020:CDS |
| TCGGGAAATAATAATGGACA+AGG | 0.644592 | tig0018197:-67428 | Msa1365020:CDS |
| AAGGCAGATACTATGCTCAC+CGG | 0.644788 | tig0018197:-68884 | Msa1365020:CDS |
| TTGATCACAAATGACAGTGC+CGG | 0.647531 | tig0018197:+68865 | None:intergenic |
| CAAGGAGGACCAATGAGTTG+TGG | 0.682632 | tig0018197:-67410 | Msa1365020:CDS |
| GGAGGAGGAGAAGAAATGGG+TGG | 0.708291 | tig0018197:+67233 | None:intergenic |
| TGACATGGAGATGTATGCTG+TGG | 0.712430 | tig0018197:-67339 | Msa1365020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTAGTTTTTTTTCTTTT+TGG | + | tig0018197:67737-67756 | None:intergenic | 15.0% |
| !! | TTTCAAATAAAAACTCATAA+TGG | + | tig0018197:67983-68002 | None:intergenic | 15.0% |
| !!! | TATGAGTTTTTATTTGAAAT+AGG | - | tig0018197:67984-68003 | Msa1365020:intron | 15.0% |
| !!! | AAGGTTTTTTTTTTCTTTTA+CGG | + | tig0018197:68392-68411 | None:intergenic | 15.0% |
| !!! | CTTTTAGTTTTTTTTCTTTT+TGG | + | tig0018197:67737-67756 | None:intergenic | 15.0% |
| !! | TTTCAAATAAAAACTCATAA+TGG | + | tig0018197:67983-68002 | None:intergenic | 15.0% |
| !!! | TATGAGTTTTTATTTGAAAT+AGG | - | tig0018197:67984-68003 | Msa1365020:intron | 15.0% |
| !!! | AAGGTTTTTTTTTTCTTTTA+CGG | + | tig0018197:68392-68411 | None:intergenic | 15.0% |
| !!! | AACATTTTTAATTCTTTCAG+TGG | - | tig0018197:67299-67318 | Msa1365020:CDS | 20.0% |
| !!! | AAATGGTTATTATGTGTTTT+TGG | + | tig0018197:67538-67557 | None:intergenic | 20.0% |
| !!! | ACAATTTAGTTTTTTCAATG+CGG | - | tig0018197:67879-67898 | Msa1365020:intron | 20.0% |
| !! | TTAAGAAACCATAAACTAAA+TGG | + | tig0018197:67925-67944 | None:intergenic | 20.0% |
| !!! | AATGTTAACCTGTATTTTTA+AGG | - | tig0018197:68009-68028 | Msa1365020:intron | 20.0% |
| !! | TTAAATGCACAAAATTTAAG+AGG | - | tig0018197:68105-68124 | Msa1365020:intron | 20.0% |
| !! | AAATAAGCAAAATAAGCATT+GGG | - | tig0018197:68190-68209 | Msa1365020:intron | 20.0% |
| !!! | ATATGTTTTTAATTGTGACA+TGG | - | tig0018197:68222-68241 | Msa1365020:intron | 20.0% |
| !!! | AAATTGTACTATTTGTTAAG+TGG | + | tig0018197:68259-68278 | None:intergenic | 20.0% |
| !! | TCAGTTCTATATTAGTAATT+AGG | - | tig0018197:68291-68310 | Msa1365020:intron | 20.0% |
| !!! | AACATTTTTAATTCTTTCAG+TGG | - | tig0018197:67299-67318 | Msa1365020:CDS | 20.0% |
| !!! | AAATGGTTATTATGTGTTTT+TGG | + | tig0018197:67538-67557 | None:intergenic | 20.0% |
| !!! | ACAATTTAGTTTTTTCAATG+CGG | - | tig0018197:67879-67898 | Msa1365020:intron | 20.0% |
| !! | TTAAGAAACCATAAACTAAA+TGG | + | tig0018197:67925-67944 | None:intergenic | 20.0% |
| !!! | AATGTTAACCTGTATTTTTA+AGG | - | tig0018197:68009-68028 | Msa1365020:intron | 20.0% |
| !! | TTAAATGCACAAAATTTAAG+AGG | - | tig0018197:68105-68124 | Msa1365020:intron | 20.0% |
| !! | AAATAAGCAAAATAAGCATT+GGG | - | tig0018197:68190-68209 | Msa1365020:intron | 20.0% |
| !!! | ATATGTTTTTAATTGTGACA+TGG | - | tig0018197:68222-68241 | Msa1365020:intron | 20.0% |
| !!! | AAATTGTACTATTTGTTAAG+TGG | + | tig0018197:68259-68278 | None:intergenic | 20.0% |
| !! | TCAGTTCTATATTAGTAATT+AGG | - | tig0018197:68291-68310 | Msa1365020:intron | 20.0% |
| ! | AAATGTATGGTACTAATAGA+TGG | + | tig0018197:67486-67505 | None:intergenic | 25.0% |
| ! | TGAGTTTATGAACTATCTTA+CGG | + | tig0018197:67820-67839 | None:intergenic | 25.0% |
| !! | TAATGGTTCCATTTAGTTTA+TGG | - | tig0018197:67914-67933 | Msa1365020:intron | 25.0% |
| !! | TGGTTTCTTAATTTGATAAG+TGG | - | tig0018197:67934-67953 | Msa1365020:intron | 25.0% |
| !! | GGTTTCTTAATTTGATAAGT+GGG | - | tig0018197:67935-67954 | Msa1365020:intron | 25.0% |
| !!! | TAAGAGGATGTTTCTATTTT+TGG | - | tig0018197:68121-68140 | Msa1365020:intron | 25.0% |
| !!! | AAGAGGATGTTTCTATTTTT+GGG | - | tig0018197:68122-68141 | Msa1365020:intron | 25.0% |
| ! | GAAATAAGCAAAATAAGCAT+TGG | - | tig0018197:68189-68208 | Msa1365020:intron | 25.0% |
| !!! | ACTAATATAGAACTGACTTT+TGG | + | tig0018197:68287-68306 | None:intergenic | 25.0% |
| ! | GTCAATAAAATCTATGACAT+AGG | + | tig0018197:68621-68640 | None:intergenic | 25.0% |
| ! | TTATTGACCAAATTTAATGC+AGG | - | tig0018197:68633-68652 | Msa1365020:intron | 25.0% |
| ! | AAATGTATGGTACTAATAGA+TGG | + | tig0018197:67486-67505 | None:intergenic | 25.0% |
| ! | TGAGTTTATGAACTATCTTA+CGG | + | tig0018197:67820-67839 | None:intergenic | 25.0% |
| !! | TAATGGTTCCATTTAGTTTA+TGG | - | tig0018197:67914-67933 | Msa1365020:intron | 25.0% |
| !! | TGGTTTCTTAATTTGATAAG+TGG | - | tig0018197:67934-67953 | Msa1365020:intron | 25.0% |
| !! | GGTTTCTTAATTTGATAAGT+GGG | - | tig0018197:67935-67954 | Msa1365020:intron | 25.0% |
| !!! | TAAGAGGATGTTTCTATTTT+TGG | - | tig0018197:68121-68140 | Msa1365020:intron | 25.0% |
| !!! | AAGAGGATGTTTCTATTTTT+GGG | - | tig0018197:68122-68141 | Msa1365020:intron | 25.0% |
| ! | GAAATAAGCAAAATAAGCAT+TGG | - | tig0018197:68189-68208 | Msa1365020:intron | 25.0% |
| !!! | ACTAATATAGAACTGACTTT+TGG | + | tig0018197:68287-68306 | None:intergenic | 25.0% |
| ! | GTCAATAAAATCTATGACAT+AGG | + | tig0018197:68621-68640 | None:intergenic | 25.0% |
| ! | TTATTGACCAAATTTAATGC+AGG | - | tig0018197:68633-68652 | Msa1365020:intron | 25.0% |
| ATTTGTGATCAATGCAAAGA+CGG | - | tig0018197:67366-67385 | Msa1365020:CDS | 30.0% | |
| ! | CTTTTCGATTATCCTGTTAA+TGG | - | tig0018197:67399-67418 | Msa1365020:CDS | 30.0% |
| GAGTTGAATGACAAAATGTA+TGG | + | tig0018197:67499-67518 | None:intergenic | 30.0% | |
| ATGCAGGAGAAAAACTAAAA+TGG | + | tig0018197:67555-67574 | None:intergenic | 30.0% | |
| ACTATGATAGAGGTTCAATT+TGG | + | tig0018197:67630-67649 | None:intergenic | 30.0% | |
| ATTGAACCTCTATCATAGTT+TGG | - | tig0018197:67631-67650 | Msa1365020:intron | 30.0% | |
| CAAATGGCAAGAACTATTAA+CGG | + | tig0018197:67677-67696 | None:intergenic | 30.0% | |
| GAGTTTATGAACTATCTTAC+GGG | + | tig0018197:67819-67838 | None:intergenic | 30.0% | |
| !!! | TGCGGTTCATTTTGATTTAA+TGG | - | tig0018197:67897-67916 | Msa1365020:intron | 30.0% |
| ! | CTTAATTTGATAAGTGGGAA+AGG | - | tig0018197:67940-67959 | Msa1365020:intron | 30.0% |
| AACTTGTGCCTTAAAAATAC+AGG | + | tig0018197:68020-68039 | None:intergenic | 30.0% | |
| TATGATAACTTATGCCCTAA+AGG | + | tig0018197:68162-68181 | None:intergenic | 30.0% | |
| TCAAAAAGAAGTTCAACAGT+TGG | - | tig0018197:68342-68361 | Msa1365020:intron | 30.0% | |
| ATACACAACAACAACAACAA+AGG | + | tig0018197:68411-68430 | None:intergenic | 30.0% | |
| TTTCAGCTAAGACAAAACAA+AGG | + | tig0018197:68531-68550 | None:intergenic | 30.0% | |
| ! | AATTTTTCATTGCCTCTAGT+TGG | - | tig0018197:68549-68568 | Msa1365020:intron | 30.0% |
| ! | ATTTTTCATTGCCTCTAGTT+GGG | - | tig0018197:68550-68569 | Msa1365020:intron | 30.0% |
| ! | TTTTGCACCTGCATTAAATT+TGG | + | tig0018197:68643-68662 | None:intergenic | 30.0% |
| CAAGAGAAGAAACAACAAAT+TGG | - | tig0018197:68706-68725 | Msa1365020:intron | 30.0% | |
| GAAGAAACAACAAATTGGTT+TGG | - | tig0018197:68711-68730 | Msa1365020:intron | 30.0% | |
| AAAATCCAAGACTCATGTTT+AGG | - | tig0018197:68853-68872 | Msa1365020:CDS | 30.0% | |
| ATTTGTGATCAATGCAAAGA+CGG | - | tig0018197:67366-67385 | Msa1365020:CDS | 30.0% | |
| ! | CTTTTCGATTATCCTGTTAA+TGG | - | tig0018197:67399-67418 | Msa1365020:CDS | 30.0% |
| GAGTTGAATGACAAAATGTA+TGG | + | tig0018197:67499-67518 | None:intergenic | 30.0% | |
| ATGCAGGAGAAAAACTAAAA+TGG | + | tig0018197:67555-67574 | None:intergenic | 30.0% | |
| ACTATGATAGAGGTTCAATT+TGG | + | tig0018197:67630-67649 | None:intergenic | 30.0% | |
| ATTGAACCTCTATCATAGTT+TGG | - | tig0018197:67631-67650 | Msa1365020:intron | 30.0% | |
| CAAATGGCAAGAACTATTAA+CGG | + | tig0018197:67677-67696 | None:intergenic | 30.0% | |
| GAGTTTATGAACTATCTTAC+GGG | + | tig0018197:67819-67838 | None:intergenic | 30.0% | |
| !!! | TGCGGTTCATTTTGATTTAA+TGG | - | tig0018197:67897-67916 | Msa1365020:intron | 30.0% |
| ! | CTTAATTTGATAAGTGGGAA+AGG | - | tig0018197:67940-67959 | Msa1365020:intron | 30.0% |
| AACTTGTGCCTTAAAAATAC+AGG | + | tig0018197:68020-68039 | None:intergenic | 30.0% | |
| TATGATAACTTATGCCCTAA+AGG | + | tig0018197:68162-68181 | None:intergenic | 30.0% | |
| TCAAAAAGAAGTTCAACAGT+TGG | - | tig0018197:68342-68361 | Msa1365020:intron | 30.0% | |
| ATACACAACAACAACAACAA+AGG | + | tig0018197:68411-68430 | None:intergenic | 30.0% | |
| TTTCAGCTAAGACAAAACAA+AGG | + | tig0018197:68531-68550 | None:intergenic | 30.0% | |
| ! | AATTTTTCATTGCCTCTAGT+TGG | - | tig0018197:68549-68568 | Msa1365020:intron | 30.0% |
| ! | ATTTTTCATTGCCTCTAGTT+GGG | - | tig0018197:68550-68569 | Msa1365020:intron | 30.0% |
| ! | TTTTGCACCTGCATTAAATT+TGG | + | tig0018197:68643-68662 | None:intergenic | 30.0% |
| CAAGAGAAGAAACAACAAAT+TGG | - | tig0018197:68706-68725 | Msa1365020:intron | 30.0% | |
| GAAGAAACAACAAATTGGTT+TGG | - | tig0018197:68711-68730 | Msa1365020:intron | 30.0% | |
| AAAATCCAAGACTCATGTTT+AGG | - | tig0018197:68853-68872 | Msa1365020:CDS | 30.0% | |
| TGGCAAATGCAATGAGAAAT+GGG | + | tig0018197:67229-67248 | None:intergenic | 35.0% | |
| TTGGCAAATGCAATGAGAAA+TGG | + | tig0018197:67230-67249 | None:intergenic | 35.0% | |
| AATGTTAGAAGAAGTCCAGT+TGG | + | tig0018197:67249-67268 | None:intergenic | 35.0% | |
| TGGACTTCTTCTAACATTCA+TGG | - | tig0018197:67251-67270 | Msa1365020:CDS | 35.0% | |
| TTTGTGATCAATGCAAAGAC+GGG | - | tig0018197:67367-67386 | Msa1365020:CDS | 35.0% | |
| AGTTAGATCTCACCATTAAC+AGG | + | tig0018197:67414-67433 | None:intergenic | 35.0% | |
| ! | TTTCTCCTGCATTGATAGAT+AGG | - | tig0018197:67563-67582 | Msa1365020:CDS | 35.0% |
| GATAGGACTGTAACTGTTTA+TGG | - | tig0018197:67580-67599 | Msa1365020:intron | 35.0% | |
| GACTGTAACTGTTTATGGTT+TGG | - | tig0018197:67585-67604 | Msa1365020:intron | 35.0% | |
| GATAGAGGTTCAATTTGGTT+CGG | + | tig0018197:67625-67644 | None:intergenic | 35.0% | |
| ACCTCTATCATAGTTTGGTA+TGG | - | tig0018197:67636-67655 | Msa1365020:intron | 35.0% | |
| ACCATACCAAACTATGATAG+AGG | + | tig0018197:67640-67659 | None:intergenic | 35.0% | |
| TTGCTTAAGATGTGCCTTTA+GGG | - | tig0018197:68145-68164 | Msa1365020:intron | 35.0% | |
| !! | TAAGCAAAATAAGCATTGGG+TGG | - | tig0018197:68193-68212 | Msa1365020:intron | 35.0% |
| !!! | TAGACTAATACTTTTTCGCC+TGG | - | tig0018197:68438-68457 | Msa1365020:intron | 35.0% |
| TCACATGTTGTGACTTTGTA+AGG | - | tig0018197:68461-68480 | Msa1365020:intron | 35.0% | |
| TGTCATGTAGTGACAACAAT+GGG | - | tig0018197:68670-68689 | Msa1365020:intron | 35.0% | |
| AGCTATACAATGAGGTTTGA+TGG | - | tig0018197:68735-68754 | Msa1365020:intron | 35.0% | |
| CATGTCTCGGGAAATAATAA+TGG | - | tig0018197:68786-68805 | Msa1365020:intron | 35.0% | |
| !! | TCGGGAAATAATAATGGACA+AGG | - | tig0018197:68792-68811 | Msa1365020:intron | 35.0% |
| !! | GGAAATAATAATGGACAAGG+AGG | - | tig0018197:68795-68814 | Msa1365020:intron | 35.0% |
| AACATCCTAAACATGAGTCT+TGG | + | tig0018197:68861-68880 | None:intergenic | 35.0% | |
| ! | CATGTTTAGGATGTTTGACA+TGG | - | tig0018197:68866-68885 | Msa1365020:CDS | 35.0% |
| !! | AAAATCATTGGTGGTAATGG+TGG | + | tig0018197:69044-69063 | None:intergenic | 35.0% |
| ! | GGAAAAATCATTGGTGGTAA+TGG | + | tig0018197:69047-69066 | None:intergenic | 35.0% |
| ! | GAAGCTTCTGGAAAAATCAT+TGG | + | tig0018197:69056-69075 | None:intergenic | 35.0% |
| TGGCAAATGCAATGAGAAAT+GGG | + | tig0018197:67229-67248 | None:intergenic | 35.0% | |
| TTGGCAAATGCAATGAGAAA+TGG | + | tig0018197:67230-67249 | None:intergenic | 35.0% | |
| AATGTTAGAAGAAGTCCAGT+TGG | + | tig0018197:67249-67268 | None:intergenic | 35.0% | |
| TGGACTTCTTCTAACATTCA+TGG | - | tig0018197:67251-67270 | Msa1365020:CDS | 35.0% | |
| TTTGTGATCAATGCAAAGAC+GGG | - | tig0018197:67367-67386 | Msa1365020:CDS | 35.0% | |
| AGTTAGATCTCACCATTAAC+AGG | + | tig0018197:67414-67433 | None:intergenic | 35.0% | |
| ! | TTTCTCCTGCATTGATAGAT+AGG | - | tig0018197:67563-67582 | Msa1365020:CDS | 35.0% |
| GATAGGACTGTAACTGTTTA+TGG | - | tig0018197:67580-67599 | Msa1365020:intron | 35.0% | |
| GACTGTAACTGTTTATGGTT+TGG | - | tig0018197:67585-67604 | Msa1365020:intron | 35.0% | |
| GATAGAGGTTCAATTTGGTT+CGG | + | tig0018197:67625-67644 | None:intergenic | 35.0% | |
| ACCTCTATCATAGTTTGGTA+TGG | - | tig0018197:67636-67655 | Msa1365020:intron | 35.0% | |
| ACCATACCAAACTATGATAG+AGG | + | tig0018197:67640-67659 | None:intergenic | 35.0% | |
| TTGCTTAAGATGTGCCTTTA+GGG | - | tig0018197:68145-68164 | Msa1365020:intron | 35.0% | |
| !! | TAAGCAAAATAAGCATTGGG+TGG | - | tig0018197:68193-68212 | Msa1365020:intron | 35.0% |
| !!! | TAGACTAATACTTTTTCGCC+TGG | - | tig0018197:68438-68457 | Msa1365020:intron | 35.0% |
| TCACATGTTGTGACTTTGTA+AGG | - | tig0018197:68461-68480 | Msa1365020:intron | 35.0% | |
| TGTCATGTAGTGACAACAAT+GGG | - | tig0018197:68670-68689 | Msa1365020:intron | 35.0% | |
| AGCTATACAATGAGGTTTGA+TGG | - | tig0018197:68735-68754 | Msa1365020:intron | 35.0% | |
| CATGTCTCGGGAAATAATAA+TGG | - | tig0018197:68786-68805 | Msa1365020:intron | 35.0% | |
| !! | TCGGGAAATAATAATGGACA+AGG | - | tig0018197:68792-68811 | Msa1365020:intron | 35.0% |
| !! | GGAAATAATAATGGACAAGG+AGG | - | tig0018197:68795-68814 | Msa1365020:intron | 35.0% |
| AACATCCTAAACATGAGTCT+TGG | + | tig0018197:68861-68880 | None:intergenic | 35.0% | |
| ! | CATGTTTAGGATGTTTGACA+TGG | - | tig0018197:68866-68885 | Msa1365020:CDS | 35.0% |
| !! | AAAATCATTGGTGGTAATGG+TGG | + | tig0018197:69044-69063 | None:intergenic | 35.0% |
| ! | GGAAAAATCATTGGTGGTAA+TGG | + | tig0018197:69047-69066 | None:intergenic | 35.0% |
| ! | GAAGCTTCTGGAAAAATCAT+TGG | + | tig0018197:69056-69075 | None:intergenic | 35.0% |
| TTCTCATTGCATTTGCCAAC+TGG | - | tig0018197:67231-67250 | Msa1365020:CDS | 40.0% | |
| TCTAACATTCATGGAGTTGC+CGG | - | tig0018197:67260-67279 | Msa1365020:CDS | 40.0% | |
| GTTGCAAACAAAAGCTTCTC+CGG | + | tig0018197:67282-67301 | None:intergenic | 40.0% | |
| ATTCTTTCAGTGGCCATTGA+TGG | - | tig0018197:67309-67328 | Msa1365020:CDS | 40.0% | |
| ATCTGCCTTTGTTCCATCAA+TGG | + | tig0018197:67325-67344 | None:intergenic | 40.0% | |
| TTGATCACAAATGACAGTGC+CGG | + | tig0018197:67358-67377 | None:intergenic | 40.0% | |
| ACAGTCCTATCTATCAATGC+AGG | + | tig0018197:67571-67590 | None:intergenic | 40.0% | |
| ! | AACTGTTTATGGTTTGGCTC+AGG | - | tig0018197:67591-67610 | Msa1365020:intron | 40.0% |
| ! | ACTGTTTATGGTTTGGCTCA+GGG | - | tig0018197:67592-67611 | Msa1365020:intron | 40.0% |
| ACAAAACTCTTGCGATTGAC+CGG | + | tig0018197:67705-67724 | None:intergenic | 40.0% | |
| GTTCATAAACTCAACCAACC+TGG | - | tig0018197:67827-67846 | Msa1365020:intron | 40.0% | |
| GTTGCTTAAGATGTGCCTTT+AGG | - | tig0018197:68144-68163 | Msa1365020:intron | 40.0% | |
| ACCCTAACTAAAACAGGAGA+GGG | + | tig0018197:68506-68525 | None:intergenic | 40.0% | |
| CTGTCATGTAGTGACAACAA+TGG | - | tig0018197:68669-68688 | Msa1365020:intron | 40.0% | |
| GGTTTGGAAGCTATACAATG+AGG | - | tig0018197:68727-68746 | Msa1365020:intron | 40.0% | |
| ! | ATGAGTCTTGGATTTTGAGC+AGG | + | tig0018197:68849-68868 | None:intergenic | 40.0% |
| GATGTTGAGCAGTATTGCAT+AGG | + | tig0018197:68933-68952 | None:intergenic | 40.0% | |
| ! | GCTTCTGGAAAAATCATTGG+TGG | + | tig0018197:69053-69072 | None:intergenic | 40.0% |
| TTCTCATTGCATTTGCCAAC+TGG | - | tig0018197:67231-67250 | Msa1365020:CDS | 40.0% | |
| TCTAACATTCATGGAGTTGC+CGG | - | tig0018197:67260-67279 | Msa1365020:CDS | 40.0% | |
| GTTGCAAACAAAAGCTTCTC+CGG | + | tig0018197:67282-67301 | None:intergenic | 40.0% | |
| ATTCTTTCAGTGGCCATTGA+TGG | - | tig0018197:67309-67328 | Msa1365020:CDS | 40.0% | |
| ATCTGCCTTTGTTCCATCAA+TGG | + | tig0018197:67325-67344 | None:intergenic | 40.0% | |
| TTGATCACAAATGACAGTGC+CGG | + | tig0018197:67358-67377 | None:intergenic | 40.0% | |
| ACAGTCCTATCTATCAATGC+AGG | + | tig0018197:67571-67590 | None:intergenic | 40.0% | |
| ! | AACTGTTTATGGTTTGGCTC+AGG | - | tig0018197:67591-67610 | Msa1365020:intron | 40.0% |
| ! | ACTGTTTATGGTTTGGCTCA+GGG | - | tig0018197:67592-67611 | Msa1365020:intron | 40.0% |
| ACAAAACTCTTGCGATTGAC+CGG | + | tig0018197:67705-67724 | None:intergenic | 40.0% | |
| GTTCATAAACTCAACCAACC+TGG | - | tig0018197:67827-67846 | Msa1365020:intron | 40.0% | |
| GTTGCTTAAGATGTGCCTTT+AGG | - | tig0018197:68144-68163 | Msa1365020:intron | 40.0% | |
| ACCCTAACTAAAACAGGAGA+GGG | + | tig0018197:68506-68525 | None:intergenic | 40.0% | |
| CTGTCATGTAGTGACAACAA+TGG | - | tig0018197:68669-68688 | Msa1365020:intron | 40.0% | |
| GGTTTGGAAGCTATACAATG+AGG | - | tig0018197:68727-68746 | Msa1365020:intron | 40.0% | |
| ! | ATGAGTCTTGGATTTTGAGC+AGG | + | tig0018197:68849-68868 | None:intergenic | 40.0% |
| GATGTTGAGCAGTATTGCAT+AGG | + | tig0018197:68933-68952 | None:intergenic | 40.0% | |
| ! | GCTTCTGGAAAAATCATTGG+TGG | + | tig0018197:69053-69072 | None:intergenic | 40.0% |
| AGTGGCCATTGATGGAACAA+AGG | - | tig0018197:67317-67336 | Msa1365020:CDS | 45.0% | |
| AAGGCAGATACTATGCTCAC+CGG | - | tig0018197:67336-67355 | Msa1365020:CDS | 45.0% | |
| ! | GTTCTTGCCATTTGCCAAAC+CGG | - | tig0018197:67683-67702 | Msa1365020:intron | 45.0% |
| TTTCACGAACTCAACCAGGT+TGG | + | tig0018197:67844-67863 | None:intergenic | 45.0% | |
| AGCATTTCACGAACTCAACC+AGG | + | tig0018197:67848-67867 | None:intergenic | 45.0% | |
| CAAAGTCACAACATGTGACC+AGG | + | tig0018197:68459-68478 | None:intergenic | 45.0% | |
| CCTAACTAAAACAGGAGAGG+GGG | + | tig0018197:68504-68523 | None:intergenic | 45.0% | |
| CCCTAACTAAAACAGGAGAG+GGG | + | tig0018197:68505-68524 | None:intergenic | 45.0% | |
| !!! | CCCCTCTCCTGTTTTAGTTA+GGG | - | tig0018197:68502-68521 | Msa1365020:intron | 45.0% |
| CACCCTAACTAAAACAGGAG+AGG | + | tig0018197:68507-68526 | None:intergenic | 45.0% | |
| !!! | CTCTCCTGTTTTAGTTAGGG+TGG | - | tig0018197:68505-68524 | Msa1365020:intron | 45.0% |
| AAGGCCACCCTAACTAAAAC+AGG | + | tig0018197:68512-68531 | None:intergenic | 45.0% | |
| ! | TTTGATGGAGCACCAGACTT+AGG | - | tig0018197:68750-68769 | Msa1365020:intron | 45.0% |
| TGGTTGTTCTGCACATGTCT+CGG | - | tig0018197:68773-68792 | Msa1365020:intron | 45.0% | |
| TGACATGGAGATGTATGCTG+TGG | - | tig0018197:68881-68900 | Msa1365020:CDS | 45.0% | |
| ! | CAGTATTGCATAGGTTGAGC+AGG | + | tig0018197:68924-68943 | None:intergenic | 45.0% |
| TGTGGAGGAGGAGAAGAAAT+GGG | + | tig0018197:68993-69012 | None:intergenic | 45.0% | |
| ATGTGGAGGAGGAGAAGAAA+TGG | + | tig0018197:68994-69013 | None:intergenic | 45.0% | |
| ! | ATTGGGGGTAGGTTGAAATG+TGG | + | tig0018197:69011-69030 | None:intergenic | 45.0% |
| ! | ATGGTGGAAGTTGTGGCATT+GGG | + | tig0018197:69028-69047 | None:intergenic | 45.0% |
| ! | AATGGTGGAAGTTGTGGCAT+TGG | + | tig0018197:69029-69048 | None:intergenic | 45.0% |
| AGTGGCCATTGATGGAACAA+AGG | - | tig0018197:67317-67336 | Msa1365020:CDS | 45.0% | |
| AAGGCAGATACTATGCTCAC+CGG | - | tig0018197:67336-67355 | Msa1365020:CDS | 45.0% | |
| ! | GTTCTTGCCATTTGCCAAAC+CGG | - | tig0018197:67683-67702 | Msa1365020:intron | 45.0% |
| TTTCACGAACTCAACCAGGT+TGG | + | tig0018197:67844-67863 | None:intergenic | 45.0% | |
| AGCATTTCACGAACTCAACC+AGG | + | tig0018197:67848-67867 | None:intergenic | 45.0% | |
| CAAAGTCACAACATGTGACC+AGG | + | tig0018197:68459-68478 | None:intergenic | 45.0% | |
| CCTAACTAAAACAGGAGAGG+GGG | + | tig0018197:68504-68523 | None:intergenic | 45.0% | |
| CCCTAACTAAAACAGGAGAG+GGG | + | tig0018197:68505-68524 | None:intergenic | 45.0% | |
| !!! | CCCCTCTCCTGTTTTAGTTA+GGG | - | tig0018197:68502-68521 | Msa1365020:intron | 45.0% |
| CACCCTAACTAAAACAGGAG+AGG | + | tig0018197:68507-68526 | None:intergenic | 45.0% | |
| !!! | CTCTCCTGTTTTAGTTAGGG+TGG | - | tig0018197:68505-68524 | Msa1365020:intron | 45.0% |
| AAGGCCACCCTAACTAAAAC+AGG | + | tig0018197:68512-68531 | None:intergenic | 45.0% | |
| ! | TTTGATGGAGCACCAGACTT+AGG | - | tig0018197:68750-68769 | Msa1365020:intron | 45.0% |
| TGGTTGTTCTGCACATGTCT+CGG | - | tig0018197:68773-68792 | Msa1365020:intron | 45.0% | |
| TGACATGGAGATGTATGCTG+TGG | - | tig0018197:68881-68900 | Msa1365020:CDS | 45.0% | |
| ! | CAGTATTGCATAGGTTGAGC+AGG | + | tig0018197:68924-68943 | None:intergenic | 45.0% |
| TGTGGAGGAGGAGAAGAAAT+GGG | + | tig0018197:68993-69012 | None:intergenic | 45.0% | |
| ATGTGGAGGAGGAGAAGAAA+TGG | + | tig0018197:68994-69013 | None:intergenic | 45.0% | |
| ! | ATTGGGGGTAGGTTGAAATG+TGG | + | tig0018197:69011-69030 | None:intergenic | 45.0% |
| ! | ATGGTGGAAGTTGTGGCATT+GGG | + | tig0018197:69028-69047 | None:intergenic | 45.0% |
| ! | AATGGTGGAAGTTGTGGCAT+TGG | + | tig0018197:69029-69048 | None:intergenic | 45.0% |
| ! | GTTTATGGTTTGGCTCAGGG+AGG | - | tig0018197:67595-67614 | Msa1365020:intron | 50.0% |
| !! | CGATTGACCGGTTTGGCAAA+TGG | + | tig0018197:67693-67712 | None:intergenic | 50.0% |
| ACTCTTGCGATTGACCGGTT+TGG | + | tig0018197:67700-67719 | None:intergenic | 50.0% | |
| !!! | CCCCCTCTCCTGTTTTAGTT+AGG | - | tig0018197:68501-68520 | Msa1365020:intron | 50.0% |
| TTGCCTCTAGTTGGGACAGT+TGG | - | tig0018197:68558-68577 | Msa1365020:intron | 50.0% | |
| TGCCTCTAGTTGGGACAGTT+GGG | - | tig0018197:68559-68578 | Msa1365020:intron | 50.0% | |
| GCAGAACAACCACCTAAGTC+TGG | + | tig0018197:68765-68784 | None:intergenic | 50.0% | |
| GGTTGTTCTGCACATGTCTC+GGG | - | tig0018197:68774-68793 | Msa1365020:intron | 50.0% | |
| CAAGGAGGACCAATGAGTTG+TGG | - | tig0018197:68810-68829 | Msa1365020:intron | 50.0% | |
| GGACCAATGAGTTGTGGTGA+AGG | - | tig0018197:68816-68835 | Msa1365020:intron | 50.0% | |
| GCACCTTCACCACAACTCAT+TGG | + | tig0018197:68822-68841 | None:intergenic | 50.0% | |
| ! | ATGAGTTGTGGTGAAGGTGC+TGG | - | tig0018197:68822-68841 | Msa1365020:CDS | 50.0% |
| ! | GAAATGGGTGGTGCCAATGT+TGG | + | tig0018197:68978-68997 | None:intergenic | 50.0% |
| ! | GGTAGGTTGAAATGTGGAGG+AGG | + | tig0018197:69005-69024 | None:intergenic | 50.0% |
| TGGTGGAAGTTGTGGCATTG+GGG | + | tig0018197:69027-69046 | None:intergenic | 50.0% | |
| !! | GGTGGTAATGGTGGAAGTTG+TGG | + | tig0018197:69035-69054 | None:intergenic | 50.0% |
| GATGGACATGCTGAAGCTTC+TGG | + | tig0018197:69068-69087 | None:intergenic | 50.0% | |
| ! | GTTTATGGTTTGGCTCAGGG+AGG | - | tig0018197:67595-67614 | Msa1365020:intron | 50.0% |
| !! | CGATTGACCGGTTTGGCAAA+TGG | + | tig0018197:67693-67712 | None:intergenic | 50.0% |
| ACTCTTGCGATTGACCGGTT+TGG | + | tig0018197:67700-67719 | None:intergenic | 50.0% | |
| !!! | CCCCCTCTCCTGTTTTAGTT+AGG | - | tig0018197:68501-68520 | Msa1365020:intron | 50.0% |
| TTGCCTCTAGTTGGGACAGT+TGG | - | tig0018197:68558-68577 | Msa1365020:intron | 50.0% | |
| TGCCTCTAGTTGGGACAGTT+GGG | - | tig0018197:68559-68578 | Msa1365020:intron | 50.0% | |
| GCAGAACAACCACCTAAGTC+TGG | + | tig0018197:68765-68784 | None:intergenic | 50.0% | |
| GGTTGTTCTGCACATGTCTC+GGG | - | tig0018197:68774-68793 | Msa1365020:intron | 50.0% | |
| CAAGGAGGACCAATGAGTTG+TGG | - | tig0018197:68810-68829 | Msa1365020:intron | 50.0% | |
| GGACCAATGAGTTGTGGTGA+AGG | - | tig0018197:68816-68835 | Msa1365020:intron | 50.0% | |
| GCACCTTCACCACAACTCAT+TGG | + | tig0018197:68822-68841 | None:intergenic | 50.0% | |
| ! | ATGAGTTGTGGTGAAGGTGC+TGG | - | tig0018197:68822-68841 | Msa1365020:CDS | 50.0% |
| ! | GAAATGGGTGGTGCCAATGT+TGG | + | tig0018197:68978-68997 | None:intergenic | 50.0% |
| ! | GGTAGGTTGAAATGTGGAGG+AGG | + | tig0018197:69005-69024 | None:intergenic | 50.0% |
| TGGTGGAAGTTGTGGCATTG+GGG | + | tig0018197:69027-69046 | None:intergenic | 50.0% | |
| !! | GGTGGTAATGGTGGAAGTTG+TGG | + | tig0018197:69035-69054 | None:intergenic | 50.0% |
| GATGGACATGCTGAAGCTTC+TGG | + | tig0018197:69068-69087 | None:intergenic | 50.0% | |
| TGCCCAACTGTCCCAACTAG+AGG | + | tig0018197:68564-68583 | None:intergenic | 55.0% | |
| ! | GATGGAGCACCAGACTTAGG+TGG | - | tig0018197:68753-68772 | Msa1365020:intron | 55.0% |
| ! | TAGGTTGAGCAGGCTGAGCA+AGG | + | tig0018197:68914-68933 | None:intergenic | 55.0% |
| !! | ATGTTGGTGGTGGTGGGGAT+GGG | + | tig0018197:68962-68981 | None:intergenic | 55.0% |
| !! | AATGTTGGTGGTGGTGGGGA+TGG | + | tig0018197:68963-68982 | None:intergenic | 55.0% |
| ATCCCCACCACCACCAACAT+TGG | - | tig0018197:68962-68981 | Msa1365020:exon | 55.0% | |
| !! | TGCCAATGTTGGTGGTGGTG+GGG | + | tig0018197:68967-68986 | None:intergenic | 55.0% |
| !! | GTGCCAATGTTGGTGGTGGT+GGG | + | tig0018197:68968-68987 | None:intergenic | 55.0% |
| ! | ATGGGTGGTGCCAATGTTGG+TGG | + | tig0018197:68975-68994 | None:intergenic | 55.0% |
| GGAGGAGGAGAAGAAATGGG+TGG | + | tig0018197:68990-69009 | None:intergenic | 55.0% | |
| ! | GGGGGTAGGTTGAAATGTGG+AGG | + | tig0018197:69008-69027 | None:intergenic | 55.0% |
| ! | GAAGTTGTGGCATTGGGGGT+AGG | + | tig0018197:69022-69041 | None:intergenic | 55.0% |
| ! | GGTGGAAGTTGTGGCATTGG+GGG | + | tig0018197:69026-69045 | None:intergenic | 55.0% |
| TGCCCAACTGTCCCAACTAG+AGG | + | tig0018197:68564-68583 | None:intergenic | 55.0% | |
| ! | GATGGAGCACCAGACTTAGG+TGG | - | tig0018197:68753-68772 | Msa1365020:intron | 55.0% |
| ! | TAGGTTGAGCAGGCTGAGCA+AGG | + | tig0018197:68914-68933 | None:intergenic | 55.0% |
| !! | ATGTTGGTGGTGGTGGGGAT+GGG | + | tig0018197:68962-68981 | None:intergenic | 55.0% |
| !! | AATGTTGGTGGTGGTGGGGA+TGG | + | tig0018197:68963-68982 | None:intergenic | 55.0% |
| ATCCCCACCACCACCAACAT+TGG | - | tig0018197:68962-68981 | Msa1365020:exon | 55.0% | |
| !! | TGCCAATGTTGGTGGTGGTG+GGG | + | tig0018197:68967-68986 | None:intergenic | 55.0% |
| !! | GTGCCAATGTTGGTGGTGGT+GGG | + | tig0018197:68968-68987 | None:intergenic | 55.0% |
| ! | ATGGGTGGTGCCAATGTTGG+TGG | + | tig0018197:68975-68994 | None:intergenic | 55.0% |
| GGAGGAGGAGAAGAAATGGG+TGG | + | tig0018197:68990-69009 | None:intergenic | 55.0% | |
| ! | GGGGGTAGGTTGAAATGTGG+AGG | + | tig0018197:69008-69027 | None:intergenic | 55.0% |
| ! | GAAGTTGTGGCATTGGGGGT+AGG | + | tig0018197:69022-69041 | None:intergenic | 55.0% |
| ! | GGTGGAAGTTGTGGCATTGG+GGG | + | tig0018197:69026-69045 | None:intergenic | 55.0% |
| AGTTGGGACAGTTGGGCAGC+TGG | - | tig0018197:68566-68585 | Msa1365020:intron | 60.0% | |
| TGAGCAGGCTGAGCAAGGAG+TGG | + | tig0018197:68909-68928 | None:intergenic | 60.0% | |
| !! | GGTGCCAATGTTGGTGGTGG+TGG | + | tig0018197:68969-68988 | None:intergenic | 60.0% |
| ! | GGTGGTGCCAATGTTGGTGG+TGG | + | tig0018197:68972-68991 | None:intergenic | 60.0% |
| AGTTGGGACAGTTGGGCAGC+TGG | - | tig0018197:68566-68585 | Msa1365020:intron | 60.0% | |
| TGAGCAGGCTGAGCAAGGAG+TGG | + | tig0018197:68909-68928 | None:intergenic | 60.0% | |
| !! | GGTGCCAATGTTGGTGGTGG+TGG | + | tig0018197:68969-68988 | None:intergenic | 60.0% |
| ! | GGTGGTGCCAATGTTGGTGG+TGG | + | tig0018197:68972-68991 | None:intergenic | 60.0% |
| !! | TGGTGGTGGTGGGGATGGGT+TGG | + | tig0018197:68958-68977 | None:intergenic | 65.0% |
| !! | TGGTGGTGGTGGGGATGGGT+TGG | + | tig0018197:68958-68977 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018197 | gene | 67148 | 69094 | 67148 | ID=Msa1365020;Name=Msa1365020 |
| tig0018197 | mRNA | 67148 | 69094 | 67148 | ID=Msa1365020-mRNA-1;Parent=Msa1365020;Name=Msa1365020-mRNA-1;_AED=0.38;_eAED=0.38;_QI=122|1|0.5|1|1|1|2|0|196 |
| tig0018197 | exon | 67148 | 67587 | 67148 | ID=Msa1365020-mRNA-1:exon:14358;Parent=Msa1365020-mRNA-1 |
| tig0018197 | exon | 68822 | 69094 | 68822 | ID=Msa1365020-mRNA-1:exon:14357;Parent=Msa1365020-mRNA-1 |
| tig0018197 | five_prime_UTR | 68973 | 69094 | 68973 | ID=Msa1365020-mRNA-1:five_prime_utr;Parent=Msa1365020-mRNA-1 |
| tig0018197 | CDS | 68822 | 68972 | 68822 | ID=Msa1365020-mRNA-1:cds;Parent=Msa1365020-mRNA-1 |
| tig0018197 | CDS | 67148 | 67587 | 67148 | ID=Msa1365020-mRNA-1:cds;Parent=Msa1365020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
