AlfalfaGEDB | Msa0528940

M. sativa cultivar zhongmu-4 / Msa0528940

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003470	Msa0528940	0.802968	4.361175e-49	-8.615850e-47
Msa0043940	Msa0528940	0.821425	4.064827e-53	-8.615850e-47
Msa0050580	Msa0528940	0.806503	7.972054e-50	-8.615850e-47
Msa0077410	Msa0528940	0.951024	4.877177e-109	-8.615850e-47
Msa0092710	Msa0528940	0.817274	3.589334e-52	-8.615850e-47
Msa0092730	Msa0528940	0.802625	5.132811e-49	-8.615850e-47
Msa0125280	Msa0528940	0.947558	5.321931e-106	-8.615850e-47
Msa0143080	Msa0528940	0.806220	9.144288e-50	-8.615850e-47
Msa0143970	Msa0528940	0.803403	3.544146e-49	-8.615850e-47
Msa0146470	Msa0528940	0.800323	1.521384e-48	-8.615850e-47

Showing 1 to 10 of 70 entries

Previous1 2 3 4 5 6 7Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 252 sgRNAs with CRISPR-Local

Find 678 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTGTCGGGTTTGGCA+AGG	0.551905	4_1:+1935207	Msa0528940:CDS
AAAGGTGGAGGACTTGGAGG+TGG	0.562037	4_1:+1935508	Msa0528940:CDS
AAAGGTGGAGGACTTGGTGG+TGG	0.508439	4_1:+1935886	Msa0528940:CDS
AAAGGTGGAGGTCTTGGAGG+TGG	0.478982	4_1:+1935754	Msa0528940:CDS
AAAGGTGGAGGTCTTGGTGG+TGG	0.530514	4_1:+1935820	Msa0528940:CDS
AAAGGTGGAGGTTTAGGTGG+TGG	0.571950	4_1:+1936048	Msa0528940:CDS
AAAGGTGGCGGACTTGGTGG+TGG	0.421826	4_1:+1935442	Msa0528940:intron
AAAGGTGGTGGCATTGGAGG+TGG	0.427769	4_1:+1935790	Msa0528940:CDS
AAAGGTGGTGGCATTGGAGG+TGG	0.427769	4_1:+1936018	Msa0528940:intron
AAAGGTGGTGGCTTTGGAGG+AGG	0.463440	4_1:+1936342	Msa0528940:CDS

Showing 1 to 10 of 252 entries

Previous1 2 3 4 5…26Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATAAGAAATGTTTGTACGAG+CGG	+	chr4_1:1936542-1936561	Msa0528940:three_prime_UTR	30.0%
ATAAGAAATGTTTGTACGAG+CGG	+	chr4_1:1936542-1936561	Msa0528940:three_prime_UTR	30.0%
GAAGATGAGAAAAACCTTGT+CGG	+	chr4_1:1935196-1935215	Msa0528940:CDS	35.0%
AAGATGAGAAAAACCTTGTC+GGG	+	chr4_1:1935197-1935216	Msa0528940:CDS	35.0%
GAAGATGAGAAAAACCTTGT+CGG	+	chr4_1:1935196-1935215	Msa0528940:CDS	35.0%
AAGATGAGAAAAACCTTGTC+GGG	+	chr4_1:1935197-1935216	Msa0528940:CDS	35.0%
ATTGGAAAAGGTGGAGGATT+TGG	+	chr4_1:1935946-1935965	Msa0528940:intron	40.0%
AAAGGTGGAGGATTTGGAAA+AGG	+	chr4_1:1935952-1935971	Msa0528940:intron	40.0%
ATATTAACGTCGATGCTCAG+TGG	-	chr4_1:1936449-1936468	None:intergenic	40.0%
ATTGGAAAAGGTGGAGGATT+TGG	+	chr4_1:1935946-1935965	Msa0528940:intron	40.0%

Showing 1 to 10 of 678 entries

Previous1 2 3 4 5…68Next

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	1935184	1936645	1935184	ID=Msa0528940;Name=Msa0528940
chr4_1	mRNA	1935184	1936645	1935184	ID=Msa0528940-mRNA-1;Parent=Msa0528940;Name=Msa0528940-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0\|0.33\|0.25\|0.5\|0\|0\|4\|193\|383
chr4_1	exon	1935184	1935430	1935184	ID=Msa0528940-mRNA-1:exon:594;Parent=Msa0528940-mRNA-1
chr4_1	exon	1935446	1935691	1935446	ID=Msa0528940-mRNA-1:exon:595;Parent=Msa0528940-mRNA-1
chr4_1	exon	1935698	1935925	1935698	ID=Msa0528940-mRNA-1:exon:596;Parent=Msa0528940-mRNA-1
chr4_1	exon	1936022	1936645	1936022	ID=Msa0528940-mRNA-1:exon:597;Parent=Msa0528940-mRNA-1
chr4_1	CDS	1935184	1935430	1935184	ID=Msa0528940-mRNA-1:cds;Parent=Msa0528940-mRNA-1
chr4_1	CDS	1935446	1935691	1935446	ID=Msa0528940-mRNA-1:cds;Parent=Msa0528940-mRNA-1
chr4_1	CDS	1935698	1935925	1935698	ID=Msa0528940-mRNA-1:cds;Parent=Msa0528940-mRNA-1
chr4_1	CDS	1936022	1936452	1936022	ID=Msa0528940-mRNA-1:cds;Parent=Msa0528940-mRNA-1
chr4_1	three_prime_UTR	1936453	1936645	1936453	ID=Msa0528940-mRNA-1:three_prime_utr;Parent=Msa0528940-mRNA-1

Gene Sequence

>Msa0528940

AATGTAAAGAATGAAGATGAGAAAAACCTTGTCGGGTTTGGCAAGGGAGGTGGGTTTGGAGGTGGGTTTGGTGGTGGAGGAGGAGCTGGTGGTGGCGGCGGTGGTGGTTTTGGTGGAGGAGGAGGATTTGGTGGTGGTGCAGGAGGTGGAGGAGGGTTTGGTGGTGGTGCAGGCGGCGGACATGGAATTGGAGGTGGAGGAGGGTTTGGTGGCGGTGGAGGTGCCGGAGGAGGGCATGGGATTGGAGGTGGCGGACTTGGTGGTGGGATAGGAAAAGGTGGGGGGGCTGGTGGAGGTGGTGGATTTGGAAAAGGTGGAGGACTTGGAGGTGGTCATGGTGGCGGCTTCGGAAAGGGTGGAGGACTTGGAGGTGGTCATGGTGGGGGCATTGGCAAAGGTGGGGGGTTCGGAGGTGGTGGTGGAATTGGCAAAGGTGGTGGTGTTGGAGGAGGGTCAGGTGGTGGCTTTGGAAAGGGCGGTGGCCTTGGAGGTGGTAAAGGTGGTGGTGGAGGTTTTGGAAAGGGCGGTGGTGTTGGAGGTGGAATTGGCAAAGGTGGAGGTCTTGGAGGTGGTGGAGGCTTTGGAAAAGGTGGTGGCATTGGAGGTGGAATCGGAAAAGGTGGAGGTCTTGGTGGTGGTGGAGGCTTTGGAAAAGGTGGTGGTGTTGGTGGTGGAATTGGCAAAGGTGGAGGACTTGGTGGTGGCGGAGGCTTTGGAAAAGGTGGTGGCATTGGAGGTGGAATCGGTAAAGGTGGAGGTTTAGGTGGTGGTATTGGAGGAGGTTCTGGTGGAGGTGGTGGTGTTGGAGGTGGTTCTGGTGGAGGTGGTGGTTTTGGAGGCGGTTCTGGTACTGGAATTGGTGGTGGGATCGGAAAAGGTTTTGGTGGAGGTATTGGGGGTGGTTCAGGTGGAGGTTTTGGCGGTGGTGTTGGAGGAGGTGGTGGTTCTGGTGGCGGCATTGGAGGTGGATTTGGCAAAGGTGGAGGTTTTGGTGGTGGTGCTGGAGGAGGTTCTGGTGGTGGTATTGGTGGAGGGTTCGGCAAAGGTGGTGGCTTTGGAGGAGGTCTTGGTGGAGGAGAAGGAGGTGGTTTTGGTGGAGGGTTTGGTGGCGGTGGCGGAGGAGGTGGAGGCGGTGGAATTGGACACCACTGA

Protein sequence

>Msa0528940

NVKNEDEKNLVGFGKGGGFGGGFGGGGGAGGGGGGGFGGGGGFGGGAGGGGGFGGGAGGGHGIGGGGGFGGGGGAGGGHGIGGGGLGGGIGKGGGAGGGGGFGKGGGLGGGHGGGFGKGGGLGGGHGGGIGKGGGFGGGGGIGKGGGVGGGSGGGFGKGGGLGGGKGGGGGFGKGGGVGGGIGKGGGLGGGGGFGKGGGIGGGIGKGGGLGGGGGFGKGGGVGGGIGKGGGLGGGGGFGKGGGIGGGIGKGGGLGGGIGGGSGGGGGVGGGSGGGGGFGGGSGTGIGGGIGKGFGGGIGGGSGGGFGGGVGGGGGSGGGIGGGFGKGGGFGGGAGGGSGGGIGGGFGKGGGFGGGLGGGEGGGFGGGFGGGGGGGGGGGIGHH*