AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1461770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1461770 MtrunA17_Chr7g0247001 98.835 601 7 0 1 601 1 601 0.0 1239
Msa1461770 MtrunA17_Chr8g0349861 85.596 604 84 1 1 601 1 604 0.0 1096
Msa1461770 MtrunA17_Chr8g0337031 65.925 584 194 2 23 601 44 627 0.0 820
Msa1461770 MtrunA17_Chr3g0140501 41.549 568 297 9 30 594 39 574 4.29e-144 429
Msa1461770 MtrunA17_Chr8g0389961 41.373 568 298 9 30 594 52 587 2.64e-142 425
Msa1461770 MtrunA17_Chr2g0331051 40.070 574 311 8 30 601 102 644 2.67e-137 414
Msa1461770 MtrunA17_Chr8g0340671 38.655 595 304 9 30 594 49 612 1.84e-131 398
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1461770 AT4G00570.1 78.489 609 120 3 1 601 2 607 0.0 1009
Msa1461770 AT2G13560.1 63.062 601 216 3 6 600 21 621 0.0 810
Msa1461770 AT5G25880.2 43.238 525 275 7 30 552 49 552 5.06e-146 434
Msa1461770 AT5G25880.1 42.991 535 282 7 30 562 49 562 1.01e-145 434
Msa1461770 AT2G19900.1 42.430 535 285 7 30 562 42 555 5.01e-143 427
Msa1461770 AT1G79750.1 41.373 568 298 10 30 594 107 642 1.29e-137 415
Msa1461770 AT5G11670.1 40.917 567 302 8 30 594 49 584 1.16e-136 411
Msa1461770 AT2G19900.2 44.086 465 247 6 100 562 3 456 8.84e-132 395
Msa1461770 AT5G25880.3 42.558 430 225 6 30 457 49 458 3.28e-115 353

Find 178 sgRNAs with CRISPR-Local

Find 426 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCGTATCATTTCATTTC+AGG 0.152277 tig0041738:+3597 Msa1461770:CDS
CATGTGCTGCTTGGATTGTC+TGG 0.164605 tig0041738:+6902 Msa1461770:CDS
AAACGATCCCTTTCAGTTAA+AGG 0.185284 tig0041738:-3553 Msa1461770:intergenic
ACTTATGGCGATATCGTTTC+AGG 0.192298 tig0041738:-5749 Msa1461770:intergenic
TGACATATGTTCAAGTTCTT+TGG 0.224805 tig0041738:-8453 Msa1461770:intergenic
CTGATTACACAAACAATTTA+CGG 0.227894 tig0041738:-8924 Msa1461770:intergenic
TCATGATCCTTGGTTCAATA+AGG 0.276524 tig0041738:+2711 Msa1461770:CDS
TCTCACCTGCAACGTGAAAA+AGG 0.277455 tig0041738:+2562 Msa1461770:five_prime_UTR
TTTCAAAAGCCCACTTCATT+TGG 0.315449 tig0041738:-5725 Msa1461770:intergenic
GGTGCGAAATCTCTTTGATT+TGG 0.316699 tig0041738:+2583 Msa1461770:five_prime_UTR
TTAGTTATATTTCAATCTAA+TGG 0.326841 tig0041738:+9045 Msa1461770:three_prime_UTR
ACAGCTGGTGTTGCACTTGC+TGG 0.332061 tig0041738:+5915 Msa1461770:CDS
GTGAGTTGAAGGTCGAATAA+TGG 0.332641 tig0041738:+8853 Msa1461770:three_prime_UTR
TGTTGCACTTGCTGGACTAC+TGG 0.334433 tig0041738:+5923 Msa1461770:CDS
ACAGATGGTAGTCGTATTCT+TGG 0.335760 tig0041738:+4946 Msa1461770:CDS
CTGATATTCTTCATGATCCT+TGG 0.337382 tig0041738:+2701 Msa1461770:CDS
CATTAAACATGCAAAACTTA+TGG 0.341246 tig0041738:-5764 Msa1461770:intergenic
TCTATTTAAGATCCTCCATT+TGG 0.349893 tig0041738:-3846 Msa1461770:intergenic
TTTAACTGAAAGGGATCGTT+TGG 0.353746 tig0041738:+3555 Msa1461770:CDS
AAAACTATTGTGGGTTATAT+AGG 0.358283 tig0041738:+4064 Msa1461770:CDS
ACAGAGGAAGATATCCAAAA+AGG 0.365695 tig0041738:+8110 Msa1461770:CDS
CACCCTCTGCAAGCCCTTCA+AGG 0.371484 tig0041738:-6668 Msa1461770:intergenic
CCGACTTGCAGTGCAGGACT+TGG 0.376410 tig0041738:+6162 Msa1461770:intron
GCAAGCCCTTCAAGGTCTCT+TGG 0.376419 tig0041738:-6660 Msa1461770:intergenic
ACTGTAGGAGTATAAATTAT+TGG 0.378336 tig0041738:-4027 Msa1461770:intergenic
TTATAACTGGCCAGCTCCTC+AGG 0.382199 tig0041738:+4143 Msa1461770:CDS
GGATTCAACTCAGGTTCTTA+AGG 0.385894 tig0041738:+7054 Msa1461770:intron
AAAGAAACACATACTCTTTG+TGG 0.393803 tig0041738:-5048 Msa1461770:intergenic
CATGTTTAATGATGATATAC+AGG 0.395861 tig0041738:+5776 Msa1461770:CDS
TAAGATCCTCCATTTGGATA+AGG 0.396615 tig0041738:-3840 Msa1461770:intergenic
CTGCTTGGATTGTCTGGGGT+TGG 0.399837 tig0041738:+6908 Msa1461770:CDS
TACAAACAAACCATTCATAG+TGG 0.405170 tig0041738:-7128 Msa1461770:intergenic
TTCCATTTCAGGATTGGCTT+GGG 0.407818 tig0041738:+7613 Msa1461770:intron
ATGTGCTGCTTGGATTGTCT+GGG 0.408383 tig0041738:+6903 Msa1461770:CDS
TTAGCAAATGGAACTGCAGC+TGG 0.409092 tig0041738:-6633 Msa1461770:intergenic
CTTGGATTGTCTGGGGTTGG+TGG 0.409859 tig0041738:+6911 Msa1461770:CDS
TATAACAGATGGAATGTTGC+AGG 0.412434 tig0041738:+7660 Msa1461770:CDS
GTCTATTGTGGATGAATTCA+TGG 0.414257 tig0041738:+5578 Msa1461770:CDS
ACAATTTACGGCTGCAACAA+AGG 0.416780 tig0041738:-8912 Msa1461770:intergenic
CAAGCAGTTTCAAGGATGTC+AGG 0.417149 tig0041738:+6204 Msa1461770:CDS
TCTTGTATCCATCCATTGAT+AGG 0.418255 tig0041738:+8135 Msa1461770:CDS
CGGATTTCCTTTAACTGAAA+GGG 0.420020 tig0041738:+3546 Msa1461770:CDS
TGATGTCGATGATTTATAAC+TGG 0.420109 tig0041738:+4130 Msa1461770:CDS
CAAGGCATTGCAATACCTAT+AGG 0.422181 tig0041738:+4988 Msa1461770:CDS
GGCGATACCTGCTCCGTGTA+TGG 0.423282 tig0041738:+2663 Msa1461770:CDS
AACAACATGTACCTGTTTCC+AGG 0.425373 tig0041738:+7516 Msa1461770:CDS
TCACACCCTACCCTGGAAAC+AGG 0.430910 tig0041738:-7527 Msa1461770:intergenic
GGTAGTCGTATTCTTGGGTT+AGG 0.436308 tig0041738:+4952 Msa1461770:CDS
TTAACTGAAAGGGATCGTTT+GGG 0.440854 tig0041738:+3556 Msa1461770:CDS
GAAATGTTACAGCAGAGGTC+GGG 0.443070 tig0041738:+8369 Msa1461770:CDS
AAATTGTTTCCTTATCCAAA+TGG 0.443400 tig0041738:+3831 Msa1461770:CDS
CAATTATCTTTAGGTTAAGA+AGG 0.446294 tig0041738:+6871 Msa1461770:intron
TTAGGTGACCTTGGAGTTCA+AGG 0.453306 tig0041738:+4970 Msa1461770:CDS
GTCGAATAATGGAGGGGAAG+GGG 0.458254 tig0041738:+8864 Msa1461770:three_prime_UTR
CTTCCATTTCAGGATTGGCT+TGG 0.458619 tig0041738:+7612 Msa1461770:intron
CAGATGGTAGTCGTATTCTT+GGG 0.460040 tig0041738:+4947 Msa1461770:CDS
ATCAGACAACGGTCGACCTT+GGG 0.462642 tig0041738:-5958 Msa1461770:intergenic
AAGATAGTTATAGTTGGAGC+TGG 0.465083 tig0041738:+5993 Msa1461770:CDS
AATGGAACATTACCTATCAA+TGG 0.467799 tig0041738:-8147 Msa1461770:intergenic
AGAATCTGTTTCAACAAAAC+CGG 0.467928 tig0041738:+7084 Msa1461770:CDS
AAGAAACACATACTCTTTGT+GGG 0.471922 tig0041738:-5047 Msa1461770:intergenic
CCTTTCAGTTAAAGGAAATC+CGG 0.475100 tig0041738:-3545 Msa1461770:intergenic
TACTCTTTGTGGGTTGATAC+CGG 0.476232 tig0041738:-5037 Msa1461770:intergenic
ATTGATGCATTTAATCATGC+TGG 0.481140 tig0041738:+7239 Msa1461770:CDS
CTGACATCCTTGAAACTGCT+TGG 0.481150 tig0041738:-6203 Msa1461770:intergenic
AGTGAGCTCATATAGATCAT+TGG 0.482376 tig0041738:+3781 Msa1461770:intron
AAACAAAAGATAGTTATAGT+TGG 0.482640 tig0041738:+5987 Msa1461770:CDS
TAATTTATACTCCTACAGTT+GGG 0.484461 tig0041738:+4031 Msa1461770:CDS
GAAGGACTGGCTGAAGGACA+CGG 0.485854 tig0041738:+8419 Msa1461770:CDS
ATAATTTATACTCCTACAGT+TGG 0.488225 tig0041738:+4030 Msa1461770:CDS
AATCAGACAACGGTCGACCT+TGG 0.490764 tig0041738:-5959 Msa1461770:intergenic
CTTCCGATCATGTTGGATGT+TGG 0.491010 tig0041738:+5218 Msa1461770:CDS
GACAAGGTTTAGTGAGTTGA+AGG 0.491250 tig0041738:+8842 Msa1461770:three_prime_UTR
TGGAAACAGGTACATGTTGT+TGG 0.491700 tig0041738:-7514 Msa1461770:intergenic
GAGCGAGAATTTATAGAATG+AGG 0.491888 tig0041738:-2506 Msa1461770:intergenic
TAGTGTGTCAAAACTATTGT+GGG 0.491936 tig0041738:+4055 Msa1461770:CDS
CCGGATTTCCTTTAACTGAA+AGG 0.492100 tig0041738:+3545 Msa1461770:CDS
ATTCTCGAAATGTAGGATAC+CGG 0.492439 tig0041738:+3526 Msa1461770:intron
TGTACAGGAAATGGAAGAGT+TGG 0.493416 tig0041738:+7477 Msa1461770:intron
TGGTGGTGTCTTTAATGAGC+AGG 0.494871 tig0041738:+6928 Msa1461770:CDS
ATGTCTAATCCCACTATGAA+TGG 0.496243 tig0041738:+7118 Msa1461770:CDS
GTTAAGCCACATGTGCTGCT+TGG 0.496996 tig0041738:+6893 Msa1461770:CDS
ATTGTCCAATAGGGTACAGC+TGG 0.498634 tig0041738:+5900 Msa1461770:intron
AAGGACTGGCTGAAGGACAC+GGG 0.499349 tig0041738:+8420 Msa1461770:CDS
TGGCTGTCCAAGCAGTTTCA+AGG 0.499377 tig0041738:+6196 Msa1461770:CDS
GTTGCACTTGCTGGACTACT+GGG 0.500837 tig0041738:+5924 Msa1461770:CDS
CTTATGGCGATATCGTTTCA+GGG 0.505866 tig0041738:-5748 Msa1461770:intergenic
ATTCTTGGGTTAGGTGACCT+TGG 0.506001 tig0041738:+4961 Msa1461770:CDS
CAATTAAATACCTGAGGAGC+TGG 0.508321 tig0041738:-4153 Msa1461770:intergenic
AGGGATCGTTTGGGGCTTCG+AGG 0.509582 tig0041738:+3565 Msa1461770:CDS
CAATTTACGGCTGCAACAAA+GGG 0.511864 tig0041738:-8911 Msa1461770:intergenic
CTCTTTGATTTGGAAGAATG+TGG 0.512520 tig0041738:+2593 Msa1461770:exon
AGGACTTGGCGTTCTTAACA+TGG 0.515080 tig0041738:+6176 Msa1461770:CDS
TGAACGAGAGGGCAATACTC+AGG 0.516454 tig0041738:-8756 Msa1461770:intergenic
GGTCGAATAATGGAGGGGAA+GGG 0.531480 tig0041738:+8863 Msa1461770:three_prime_UTR
GGCTTGGGATCACTACTGTC+TGG 0.532663 tig0041738:+7628 Msa1461770:CDS
TTAGACATGGCAAAGATAGC+CGG 0.533323 tig0041738:-7103 Msa1461770:intergenic
AATAATGGAGGGGAAGGGGA+AGG 0.534229 tig0041738:+8868 Msa1461770:three_prime_UTR
TGTTGTTGGCTTGATTTACA+TGG 0.538797 tig0041738:-7500 Msa1461770:intergenic
AGGTCGAATAATGGAGGGGA+AGG 0.540000 tig0041738:+8862 Msa1461770:three_prime_UTR
TGCAGCAATTGCTGAAGGAC+TGG 0.546583 tig0041738:+8406 Msa1461770:CDS
TGTTGCAGGCAGCATCTGAA+TGG 0.553171 tig0041738:+7674 Msa1461770:CDS
TTGAGGATTTCCAAATGAAG+TGG 0.553205 tig0041738:+5715 Msa1461770:CDS
GGTGCTCATCATATAACAGA+TGG 0.558738 tig0041738:+7649 Msa1461770:CDS
CACGTTGCAGGTGAGAATTG+AGG 0.568147 tig0041738:-2555 Msa1461770:intergenic
ATGGCCGAAGGCTATTGTGC+AGG 0.569011 tig0041738:+5617 Msa1461770:CDS
ATGAAATGATACGAGGAGGA+AGG 0.570448 tig0041738:-3591 Msa1461770:intergenic
CATACCTGCACAATAGCCTT+CGG 0.571200 tig0041738:-5621 Msa1461770:intergenic
AAATGTTACAGCAGAGGTCG+GGG 0.572028 tig0041738:+8370 Msa1461770:CDS
GTTCCAACATCCAACATGAT+CGG 0.573217 tig0041738:-5221 Msa1461770:intergenic
CGAAATGTTACAGCAGAGGT+CGG 0.573503 tig0041738:+8368 Msa1461770:CDS
TGAGGATTTCCAAATGAAGT+GGG 0.574179 tig0041738:+5716 Msa1461770:CDS
GACAATCCAAGCAGCACATG+TGG 0.574848 tig0041738:-6899 Msa1461770:intergenic
GAACATTACCTATCAATGGA+TGG 0.575570 tig0041738:-8143 Msa1461770:intergenic
AGGACTTCGACAACCTAGGT+TGG 0.576211 tig0041738:+5539 Msa1461770:CDS
TGTGTGTGTGAGAGAGAGAG+AGG 0.576244 tig0041738:-2438 Msa1461770:intergenic
AGTTGAAGGTCGAATAATGG+AGG 0.577437 tig0041738:+8856 Msa1461770:three_prime_UTR
TTATGAACCATACACGGAGC+AGG 0.578199 tig0041738:-2670 Msa1461770:intergenic
GACCTTGAAGGGCTTGCAGA+GGG 0.582107 tig0041738:+6666 Msa1461770:CDS
GAAAACATAGTGTTTGCAAG+TGG 0.582712 tig0041738:+7263 Msa1461770:CDS
TTGTTTCCTTATCCAAATGG+AGG 0.585354 tig0041738:+3834 Msa1461770:CDS
GACATGATTGTCTTGACAGA+TGG 0.585645 tig0041738:+4931 Msa1461770:CDS
ATCTAATGGTAAGTGCATTG+AGG 0.589652 tig0041738:+9059 Msa1461770:three_prime_UTR
ATTGCTGAAGGACTGGCTGA+AGG 0.590529 tig0041738:+8413 Msa1461770:CDS
ACAACCTAGGTTGGAAGGTG+AGG 0.592971 tig0041738:+5548 Msa1461770:CDS
TACTCCTCACCTTCCAACCT+AGG 0.593519 tig0041738:-5552 Msa1461770:intergenic
ACAACATGTACCTGTTTCCA+GGG 0.594527 tig0041738:+7517 Msa1461770:CDS
AGGACTGGCTGAAGGACACG+GGG 0.597936 tig0041738:+8421 Msa1461770:CDS
GCGATCGCGGTTGTTCTCGA+CGG 0.600148 tig0041738:+2642 Msa1461770:CDS
CTACGTGCAGCAATTGCTGA+AGG 0.603113 tig0041738:+8401 Msa1461770:CDS
TGGCTGCATCATCGCGATCG+CGG 0.605590 tig0041738:+2629 Msa1461770:CDS
TGTTCACGCACGATGGCCGA+AGG 0.606783 tig0041738:+5605 Msa1461770:CDS
ACAAACAAACCATTCATAGT+GGG 0.607045 tig0041738:-7127 Msa1461770:intergenic
AGATAGTTATAGTTGGAGCT+GGG 0.607846 tig0041738:+5994 Msa1461770:CDS
CCTCTGTCATGTATGAAGCA+AGG 0.608317 tig0041738:-8094 Msa1461770:intergenic
CTTCGACAACCTAGGTTGGA+AGG 0.608845 tig0041738:+5543 Msa1461770:CDS
TAACTGAAAGGGATCGTTTG+GGG 0.609536 tig0041738:+3557 Msa1461770:CDS
TCTTAAATAGACTACATGAC+AGG 0.611160 tig0041738:+3858 Msa1461770:CDS
GATATGTATGTTGCAGCTGC+CGG 0.611656 tig0041738:+5018 Msa1461770:CDS
TGACACACTAACCCAACTGT+AGG 0.613154 tig0041738:-4042 Msa1461770:intergenic
GGGTGCTAGTATCATTGAAG+TGG 0.613416 tig0041738:+6686 Msa1461770:CDS
CTGGGAACTGTAAGATCCCA+AGG 0.613488 tig0041738:+5942 Msa1461770:CDS
TGAGGAGTATCTGTCTATTG+TGG 0.617633 tig0041738:+5566 Msa1461770:CDS
GAACGAGAGGGCAATACTCA+GGG 0.618260 tig0041738:-8755 Msa1461770:intergenic
TGTGCTGCTTGGATTGTCTG+GGG 0.618857 tig0041738:+6904 Msa1461770:CDS
TTGATTTGGAAGAATGTGGA+AGG 0.621516 tig0041738:+2597 Msa1461770:exon
AAATGATACGAGGAGGAAGG+AGG 0.624874 tig0041738:-3588 Msa1461770:intergenic
AAGCAGTTTCAAGGATGTCA+GGG 0.624954 tig0041738:+6205 Msa1461770:CDS
TTAGTGTGTCAAAACTATTG+TGG 0.625148 tig0041738:+4054 Msa1461770:CDS
AGACCTTGAAGGGCTTGCAG+AGG 0.626764 tig0041738:+6665 Msa1461770:CDS
AATGTGGAAGGTGACGCGTT+TGG 0.629005 tig0041738:+2609 Msa1461770:exon
ATTTAGGACTTCGACAACCT+AGG 0.630481 tig0041738:+5535 Msa1461770:CDS
TTGCAATGCCTTGAACTCCA+AGG 0.632078 tig0041738:-4978 Msa1461770:intergenic
GTTGAAGGTCGAATAATGGA+GGG 0.634438 tig0041738:+8857 Msa1461770:three_prime_UTR
AAAATCCAAGAGACCTTGAA+GGG 0.639366 tig0041738:+6655 Msa1461770:CDS
TGATGAACCTTATTGAACCA+AGG 0.639671 tig0041738:-2718 Msa1461770:intergenic
CCACGTTTATGAACCATACA+CGG 0.649265 tig0041738:-2676 Msa1461770:intergenic
GATACTGTGGAGTACGTCAG+AGG 0.655567 tig0041738:+8720 Msa1461770:CDS
GCAGATACTTCCGATCATGT+TGG 0.657392 tig0041738:+5211 Msa1461770:intron
CCGTGTATGGTTCATAAACG+TGG 0.657511 tig0041738:+2676 Msa1461770:CDS
ATTCATAGTGGGATTAGACA+TGG 0.658360 tig0041738:-7116 Msa1461770:intergenic
AGTACGTCAGAGGAAATATG+TGG 0.662162 tig0041738:+8730 Msa1461770:CDS
TGAAATGAAATGATACGAGG+AGG 0.663233 tig0041738:-3595 Msa1461770:intergenic
TATACGAAATGTTACAGCAG+AGG 0.671666 tig0041738:+8364 Msa1461770:CDS
TTGAAGGTCGAATAATGGAG+GGG 0.673793 tig0041738:+8858 Msa1461770:three_prime_UTR
TGGAAGCTGTTCACGCACGA+TGG 0.678332 tig0041738:+5598 Msa1461770:CDS
TCATTGGAGAAGAATACCCA+TGG 0.678652 tig0041738:+3797 Msa1461770:CDS
TTGCAGGTGAGAATTGAGGT+AGG 0.681828 tig0041738:-2551 Msa1461770:intergenic
ACAGCAATTCATGACTGACA+AGG 0.691306 tig0041738:+8826 Msa1461770:three_prime_UTR
TAGTTATAGTTGGAGCTGGG+AGG 0.704083 tig0041738:+5997 Msa1461770:CDS
TGTTTCGTAAAATCAGACAA+CGG 0.709672 tig0041738:-5969 Msa1461770:intergenic
AGGGGCTTGTCACGACAGAG+AGG 0.711891 tig0041738:+6598 Msa1461770:intron
TCCTGAAATGAAATGATACG+AGG 0.716494 tig0041738:-3598 Msa1461770:intergenic
TGCATTTCAGGATGATACTG+TGG 0.719517 tig0041738:+8707 Msa1461770:intron
CCTTGCTTCATACATGACAG+AGG 0.720121 tig0041738:+8094 Msa1461770:CDS
AACAACTGTCTATCACAGTG+TGG 0.727004 tig0041738:-8998 Msa1461770:intergenic
GCACTAAAATACATTCCACG+TGG 0.727261 tig0041738:-4090 Msa1461770:intergenic
GGACTGGCTGAAGGACACGG+GGG 0.737828 tig0041738:+8422 Msa1461770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAAAATAAAAAATATT+TGG - tig0041738:4434-4453 Msa1461770:intergenic 0.0%
!!! AATATTTTTTATTTTATTAT+TGG + tig0041738:4434-4453 Msa1461770:intron 0.0%
!! ATTAAAATGATAATATGTTA+TGG - tig0041738:3756-3775 Msa1461770:intergenic 10.0%
!!! ATTCTTATTTTTTTGAATTT+TGG + tig0041738:4505-4524 Msa1461770:intron 10.0%
!!! ATTGCATTTAAATTTTATAA+CGG + tig0041738:5413-5432 Msa1461770:intron 10.0%
!!! ATTTCTTTATTTTAATTGTT+GGG + tig0041738:7033-7052 Msa1461770:intron 10.0%
!!! TCTGATATTTTTATTATTAT+TGG + tig0041738:7197-7216 Msa1461770:intron 10.0%
!! AAATGATAACAAAAAAAAAA+TGG - tig0041738:8168-8187 Msa1461770:intergenic 10.0%
!!! AGTTTTGATTTAATATTTAT+TGG + tig0041738:8953-8972 Msa1461770:three_prime_UTR 10.0%
!!! GTAATAATTTATTTTCATAG+TGG - tig0041738:2996-3015 Msa1461770:intergenic 15.0%
!! GAAAAAAATAATATCAGTTA+TGG + tig0041738:3018-3037 Msa1461770:intron 15.0%
!! AAAAAAAAGCTATAACAAAT+GGG + tig0041738:3171-3190 Msa1461770:intron 15.0%
!!! TTATTTTATTATTGGAATTG+AGG + tig0041738:4442-4461 Msa1461770:intron 15.0%
!!! GATTTCTTTATTTTAATTGT+TGG + tig0041738:7032-7051 Msa1461770:intron 15.0%
!!! ACCTCTTAATATTATTTTTT+TGG + tig0041738:7318-7337 Msa1461770:intron 15.0%
!!! TTAATATTATTTTTTTGGCT+TGG + tig0041738:7323-7342 Msa1461770:intron 15.0%
!! AATAAGAATATTAACATACA+CGG + tig0041738:7896-7915 Msa1461770:intron 15.0%
!! ATGTTAGTAATGTATTTAAA+AGG - tig0041738:8058-8077 Msa1461770:intergenic 15.0%
!!! TTGATTTTCAATTTTTTTCT+TGG + tig0041738:8186-8205 Msa1461770:intron 15.0%
!!! CAAGTTTTTAAAAGAAATAA+TGG + tig0041738:8286-8305 Msa1461770:intron 15.0%
!!! ATATAATTTGTATTCTATCA+GGG + tig0041738:8539-8558 Msa1461770:intron 15.0%
!! CATATATAAGATAAAATAAG+AGG - tig0041738:8616-8635 Msa1461770:intergenic 15.0%
!!! CTCTTATTTTATCTTATATA+TGG + tig0041738:8614-8633 Msa1461770:intron 15.0%
!! TTAGTTATATTTCAATCTAA+TGG + tig0041738:9045-9064 Msa1461770:three_prime_UTR 15.0%
!!! AAATGTAGTAGTTATTTTGA+AGG + tig0041738:2892-2911 Msa1461770:intron 20.0%
!! GAAAAAAAAGCTATAACAAA+TGG + tig0041738:3170-3189 Msa1461770:intron 20.0%
!! AAAAAAAGCTATAACAAATG+GGG + tig0041738:3172-3191 Msa1461770:intron 20.0%
!!! TCACAAAATCATCAAATTTT+GGG - tig0041738:3255-3274 Msa1461770:intergenic 20.0%
!!! ATCACAAAATCATCAAATTT+TGG - tig0041738:3256-3275 Msa1461770:intergenic 20.0%
!!! AATTTGATGATTTTGTGATT+TGG + tig0041738:3257-3276 Msa1461770:intron 20.0%
!!! TATTTTAATTCTCGAAATGT+AGG + tig0041738:3519-3538 Msa1461770:intron 20.0%
!!! TATTTTAGTGCTAAAGATAA+AGG + tig0041738:4102-4121 Msa1461770:CDS 20.0%
!! AATTAAGAACTGAAAGAAAA+GGG - tig0041738:4198-4217 Msa1461770:intergenic 20.0%
!! GTAAATATAGGAAAATATAG+AGG + tig0041738:4582-4601 Msa1461770:intron 20.0%
!!! TGTTATTCATTTGTTAGAAT+TGG + tig0041738:4880-4899 Msa1461770:intron 20.0%
!! AAAATAAAATACACAAGTTG+CGG - tig0041738:5108-5127 Msa1461770:intergenic 20.0%
!!! CAACTTGTGTATTTTATTTT+AGG + tig0041738:5108-5127 Msa1461770:intron 20.0%
!!! GGTATGTTTTCATTTTTAAT+TGG + tig0041738:5129-5148 Msa1461770:intron 20.0%
!!! TTTCATTTTTAATTGGAACT+TGG + tig0041738:5136-5155 Msa1461770:intron 20.0%
!! TAAATGCAATCAAATAATCT+AGG - tig0041738:5403-5422 Msa1461770:intergenic 20.0%
!! AAACAAAAGATAGTTATAGT+TGG + tig0041738:5987-6006 Msa1461770:CDS 20.0%
!! AAAAAAATATCATGTAAGGA+AGG - tig0041738:6140-6159 Msa1461770:intergenic 20.0%
!! TAGAATCATGAAGATTATTA+TGG - tig0041738:6343-6362 Msa1461770:intergenic 20.0%
!! GATAAAAAATTGAGGATATT+TGG - tig0041738:6407-6426 Msa1461770:intergenic 20.0%
!!! ATTTTGACGATAAAAAATTG+AGG - tig0041738:6415-6434 Msa1461770:intergenic 20.0%
!! TATACAAACATGATTATCTA+TGG - tig0041738:6794-6813 Msa1461770:intergenic 20.0%
!! GCCAAAAAAATAATATTAAG+AGG - tig0041738:7322-7341 Msa1461770:intergenic 20.0%
!! TTTCATATATTTCTCAGATA+TGG + tig0041738:7360-7379 Msa1461770:intron 20.0%
!!! AAAAATTATTTTGGAGGTAA+TGG - tig0041738:7458-7477 Msa1461770:intergenic 20.0%
!!! TTCCTGTACAAAAATTATTT+TGG - tig0041738:7467-7486 Msa1461770:intergenic 20.0%
!!! AATAATTTTTGTACAGGAAA+TGG + tig0041738:7468-7487 Msa1461770:intron 20.0%
!!! TTTAGTTTTTAGATCAATTG+TGG + tig0041738:7996-8015 Msa1461770:intron 20.0%
!! AAGAAATAATGGTATGTATA+TGG + tig0041738:8297-8316 Msa1461770:intron 20.0%
!!! GATATAATTTGTATTCTATC+AGG + tig0041738:8538-8557 Msa1461770:intron 20.0%
!! ATAAGATAAAATAAGAGGTT+TGG - tig0041738:8611-8630 Msa1461770:intergenic 20.0%
!!! TTATGGAAAAAGTGTTTTTC+TGG + tig0041738:3035-3054 Msa1461770:intron 25.0%
! ACAAATGAGAAAATAGACAT+TGG + tig0041738:3318-3337 Msa1461770:intron 25.0%
! CAAATGAGAAAATAGACATT+GGG + tig0041738:3319-3338 Msa1461770:intron 25.0%
! AATTCACCTCGAATTAATTA+AGG + tig0041738:3370-3389 Msa1461770:intron 25.0%
! AAATTGTTTCCTTATCCAAA+TGG + tig0041738:3831-3850 Msa1461770:CDS 25.0%
! TGGTAACATTTATTTCCAAA+TGG + tig0041738:3943-3962 Msa1461770:intron 25.0%
!! ACTGTAGGAGTATAAATTAT+TGG - tig0041738:4030-4049 Msa1461770:intergenic 25.0%
! ATAATTTATACTCCTACAGT+TGG + tig0041738:4030-4049 Msa1461770:CDS 25.0%
! TAATTTATACTCCTACAGTT+GGG + tig0041738:4031-4050 Msa1461770:CDS 25.0%
!! AAAACTATTGTGGGTTATAT+AGG + tig0041738:4064-4083 Msa1461770:CDS 25.0%
! CAATTAAGAACTGAAAGAAA+AGG - tig0041738:4199-4218 Msa1461770:intergenic 25.0%
! CTTTCAGTTCTTAATTGAAA+TGG + tig0041738:4202-4221 Msa1461770:intron 25.0%
! AGTTCTTAATTGAAATGGAA+GGG + tig0041738:4207-4226 Msa1461770:intron 25.0%
!! TTTTCATTATTCCCTTCTAT+GGG + tig0041738:4238-4257 Msa1461770:intron 25.0%
! AATATAGGAAAATATAGAGG+AGG + tig0041738:4585-4604 Msa1461770:intron 25.0%
! ACAAATGAATAACAAAAGTC+AGG - tig0041738:4874-4893 Msa1461770:intergenic 25.0%
!! TACATATCAAGTTTTCCTAT+AGG - tig0041738:5006-5025 Msa1461770:intergenic 25.0%
!!! TTTTTAATTGGAACTTGGTA+TGG + tig0041738:5141-5160 Msa1461770:intron 25.0%
! AACATATTTGCTTTACAAAC+TGG + tig0041738:5352-5371 Msa1461770:intron 25.0%
!!! TGACTTATTTTTTCAGTTTG+AGG + tig0041738:5698-5717 Msa1461770:intron 25.0%
! CATTAAACATGCAAAACTTA+TGG - tig0041738:5767-5786 Msa1461770:intergenic 25.0%
! CATGTTTAATGATGATATAC+AGG + tig0041738:5776-5795 Msa1461770:CDS 25.0%
! ATGTTCAATCATTTAAGTGA+TGG + tig0041738:5828-5847 Msa1461770:intron 25.0%
! TATTGGACAATGAAAATGAT+GGG - tig0041738:5891-5910 Msa1461770:intergenic 25.0%
!! ATCATTTTCATTGTCCAATA+GGG + tig0041738:5891-5910 Msa1461770:intron 25.0%
! CATGAAGATTATTATGGATT+AGG - tig0041738:6337-6356 Msa1461770:intergenic 25.0%
! CATGATAAATATATGCTCTT+TGG + tig0041738:6470-6489 Msa1461770:intron 25.0%
! ATGATGAATCTTATCAACAA+TGG - tig0041738:6543-6562 Msa1461770:intergenic 25.0%
! CTTCTTAACCTAAAGATAAT+TGG - tig0041738:6873-6892 Msa1461770:intergenic 25.0%
!! CAATTATCTTTAGGTTAAGA+AGG + tig0041738:6871-6890 Msa1461770:intron 25.0%
! TTAAATGCAATAGACATGTT+TGG + tig0041738:7010-7029 Msa1461770:intron 25.0%
!! CAAGATCTACATTTTCAAAA+GGG - tig0041738:7292-7311 Msa1461770:intergenic 25.0%
! ATATAGGATAATACATCTTG+TGG + tig0041738:7388-7407 Msa1461770:intron 25.0%
!!! CTGTACAAAAATTATTTTGG+AGG - tig0041738:7464-7483 Msa1461770:intergenic 25.0%
!! CTCCAAAATAATTTTTGTAC+AGG + tig0041738:7462-7481 Msa1461770:intron 25.0%
!! TAAATTTTCTAAACTTCCAC+TGG - tig0041738:7712-7731 Msa1461770:intergenic 25.0%
!! TTATCTTGTTTGATGTTTGT+AGG + tig0041738:7729-7748 Msa1461770:intron 25.0%
!! TATCTTGTTTGATGTTTGTA+GGG + tig0041738:7730-7749 Msa1461770:intron 25.0%
!! GTAGAGAAATTTTCAAAGAA+AGG - tig0041738:7833-7852 Msa1461770:intergenic 25.0%
! GAAAAATGAAATTTCTGTGA+AGG + tig0041738:8780-8799 Msa1461770:exon 25.0%
! GACTAAATATGAAAAATGCA+AGG - tig0041738:8806-8825 Msa1461770:intergenic 25.0%
! CTGATTACACAAACAATTTA+CGG - tig0041738:8927-8946 Msa1461770:intergenic 25.0%
CGAAGATAGAAACATAGTAA+TGG - tig0041738:2772-2791 Msa1461770:intergenic 30.0%
AATTGAACGGACACATATAA+TGG - tig0041738:3354-3373 Msa1461770:intergenic 30.0%
TTAATTCGAGGTGAATTGAA+CGG - tig0041738:3367-3386 Msa1461770:intergenic 30.0%
ACTGAACCTTAATTAATTCG+AGG - tig0041738:3379-3398 Msa1461770:intergenic 30.0%
! AGGAAACAATTTTATCTGAC+TGG - tig0041738:3823-3842 Msa1461770:intergenic 30.0%
! TCTATTTAAGATCCTCCATT+TGG - tig0041738:3849-3868 Msa1461770:intergenic 30.0%
TCTTAAATAGACTACATGAC+AGG + tig0041738:3858-3877 Msa1461770:CDS 30.0%
GGTTGTTATGTGAGAAAATA+TGG + tig0041738:3923-3942 Msa1461770:intron 30.0%
GTAACAACATAAGAACCATT+TGG - tig0041738:3961-3980 Msa1461770:intergenic 30.0%
TTAGTGTGTCAAAACTATTG+TGG + tig0041738:4054-4073 Msa1461770:CDS 30.0%
TAGTGTGTCAAAACTATTGT+GGG + tig0041738:4055-4074 Msa1461770:CDS 30.0%
TGATGTCGATGATTTATAAC+TGG + tig0041738:4130-4149 Msa1461770:CDS 30.0%
CAAGATCAATTAAATACCTG+AGG - tig0041738:4162-4181 Msa1461770:intergenic 30.0%
CTCAGGTATTTAATTGATCT+TGG + tig0041738:4160-4179 Msa1461770:intron 30.0%
CAGTTCTTAATTGAAATGGA+AGG + tig0041738:4206-4225 Msa1461770:intron 30.0%
! CTTTTCATTATTCCCTTCTA+TGG + tig0041738:4237-4256 Msa1461770:intron 30.0%
! TAGTATTGTTCAAGTTTGTG+CGG + tig0041738:4275-4294 Msa1461770:intron 30.0%
GTAAAATTTGAACTTCCTGA+TGG + tig0041738:4348-4367 Msa1461770:intron 30.0%
TAACTGGATCCATAACAAAA+AGG - tig0041738:4405-4424 Msa1461770:intergenic 30.0%
ACACCTATCATGCATAAAAT+TGG + tig0041738:4660-4679 Msa1461770:intron 30.0%
TAGAACTTCTTCAACGATTT+AGG + tig0041738:4701-4720 Msa1461770:intron 30.0%
! ACGATTTAGGTATTTAGCTT+TGG + tig0041738:4714-4733 Msa1461770:intron 30.0%
! ATCTTTTTATGTGACTGCAT+TGG + tig0041738:4757-4776 Msa1461770:intron 30.0%
AAGAAACACATACTCTTTGT+GGG - tig0041738:5050-5069 Msa1461770:intergenic 30.0%
AAAGAAACACATACTCTTTG+TGG - tig0041738:5051-5070 Msa1461770:intergenic 30.0%
AGAATGAATTCAACTCACAA+AGG - tig0041738:5274-5293 Msa1461770:intergenic 30.0%
ATATTTGCTTTACAAACTGG+AGG + tig0041738:5355-5374 Msa1461770:intron 30.0%
! GATTTTCATGTGACAGATTT+AGG + tig0041738:5519-5538 Msa1461770:intron 30.0%
TTGATGTTTACATTAGCAAC+TGG + tig0041738:5668-5687 Msa1461770:intron 30.0%
CTATTGGACAATGAAAATGA+TGG - tig0041738:5892-5911 Msa1461770:intergenic 30.0%
! CATCATTTTCATTGTCCAAT+AGG + tig0041738:5890-5909 Msa1461770:intron 30.0%
TGTTTCGTAAAATCAGACAA+CGG - tig0041738:5972-5991 Msa1461770:intergenic 30.0%
AAAACAAACTGGACACAATA+AGG - tig0041738:6050-6069 Msa1461770:intergenic 30.0%
GGGCAAAAAAATATCATGTA+AGG - tig0041738:6144-6163 Msa1461770:intergenic 30.0%
!!! TCTCTTGGATTTTTAGCAAA+TGG - tig0041738:6648-6667 Msa1461770:intergenic 30.0%
! AGTTTTCCTCAAACAAATTC+AGG - tig0041738:6719-6738 Msa1461770:intergenic 30.0%
TAAATAACAGACTAAGCCAA+TGG - tig0041738:6742-6761 Msa1461770:intergenic 30.0%
TGTTGATGCCAATTATCTTT+AGG + tig0041738:6862-6881 Msa1461770:intron 30.0%
AGAATCTGTTTCAACAAAAC+CGG + tig0041738:7084-7103 Msa1461770:CDS 30.0%
ACAAACAAACCATTCATAGT+GGG - tig0041738:7130-7149 Msa1461770:intergenic 30.0%
TACAAACAAACCATTCATAG+TGG - tig0041738:7131-7150 Msa1461770:intergenic 30.0%
!! ATGAATGGTTTGTTTGTACA+AGG + tig0041738:7133-7152 Msa1461770:intron 30.0%
ATTGATGCATTTAATCATGC+TGG + tig0041738:7239-7258 Msa1461770:CDS 30.0%
! CCAAGATCTACATTTTCAAA+AGG - tig0041738:7293-7312 Msa1461770:intergenic 30.0%
!! CCTTTTGAAAATGTAGATCT+TGG + tig0041738:7290-7309 Msa1461770:CDS 30.0%
CATATATTTCTCAGATATGG+AGG + tig0041738:7363-7382 Msa1461770:intron 30.0%
ATGCCTTTGAATGAAAATGT+TGG + tig0041738:7571-7590 Msa1461770:intron 30.0%
TGCCTTTGAATGAAAATGTT+GGG + tig0041738:7572-7591 Msa1461770:intron 30.0%
TGATTAGACAATAAGTGAGA+AGG - tig0041738:7790-7809 Msa1461770:intergenic 30.0%
! AATTTTCAAAGAAAGGAGGT+AGG - tig0041738:7826-7845 Msa1461770:intergenic 30.0%
! GAGAAATTTTCAAAGAAAGG+AGG - tig0041738:7830-7849 Msa1461770:intergenic 30.0%
!! TGTATTTAAAAGGCATTGAG+TGG - tig0041738:8048-8067 Msa1461770:intergenic 30.0%
! ATGGATACAAGATTCCTTTT+TGG - tig0041738:8127-8146 Msa1461770:intergenic 30.0%
AATGGAACATTACCTATCAA+TGG - tig0041738:8150-8169 Msa1461770:intergenic 30.0%
GGTATGTATATGGTTATTTG+TGG + tig0041738:8307-8326 Msa1461770:intron 30.0%
! TGACATATGTTCAAGTTCTT+TGG - tig0041738:8456-8475 Msa1461770:intergenic 30.0%
TAATCATGCATTGCATATTC+TGG + tig0041738:8504-8523 Msa1461770:intron 30.0%
GCAGAATATGAGTAAAACTA+GGG - tig0041738:8657-8676 Msa1461770:intergenic 30.0%
AGCAGAATATGAGTAAAACT+AGG - tig0041738:8658-8677 Msa1461770:intergenic 30.0%
!! TAACTCATTGTTGTTTGCTT+TGG + tig0041738:8683-8702 Msa1461770:intron 30.0%
!! TTCATTTTTCATGAACGAGA+GGG - tig0041738:8770-8789 Msa1461770:intergenic 30.0%
!! TTTCATTTTTCATGAACGAG+AGG - tig0041738:8771-8790 Msa1461770:intergenic 30.0%
GAGCGAGAATTTATAGAATG+AGG - tig0041738:2509-2528 Msa1387050:intergenic 35.0%
!! CTCTTTGATTTGGAAGAATG+TGG + tig0041738:2593-2612 Msa1461770:exon 35.0%
!! TTGATTTGGAAGAATGTGGA+AGG + tig0041738:2597-2616 Msa1461770:exon 35.0%
CTGATATTCTTCATGATCCT+TGG + tig0041738:2701-2720 Msa1461770:CDS 35.0%
TCATGATCCTTGGTTCAATA+AGG + tig0041738:2711-2730 Msa1461770:CDS 35.0%
TGATGAACCTTATTGAACCA+AGG - tig0041738:2721-2740 Msa1461770:intergenic 35.0%
!!! TTAAGGTTCAGTGTCACTTT+TGG + tig0041738:3387-3406 Msa1461770:intron 35.0%
TATCTAAATCCTCAGTATCC+AGG - tig0041738:3414-3433 Msa1461770:intergenic 35.0%
AAGCATTAAATCCAAACCAG+TGG - tig0041738:3490-3509 Msa1461770:intergenic 35.0%
ATTCTCGAAATGTAGGATAC+CGG + tig0041738:3526-3545 Msa1461770:intron 35.0%
CCTTTCAGTTAAAGGAAATC+CGG - tig0041738:3548-3567 Msa1461770:intergenic 35.0%
CGGATTTCCTTTAACTGAAA+GGG + tig0041738:3546-3565 Msa1461770:CDS 35.0%
AAACGATCCCTTTCAGTTAA+AGG - tig0041738:3556-3575 Msa1461770:intergenic 35.0%
TTTAACTGAAAGGGATCGTT+TGG + tig0041738:3555-3574 Msa1461770:CDS 35.0%
TTAACTGAAAGGGATCGTTT+GGG + tig0041738:3556-3575 Msa1461770:CDS 35.0%
TGAAATGAAATGATACGAGG+AGG - tig0041738:3598-3617 Msa1461770:intergenic 35.0%
TCCTCGTATCATTTCATTTC+AGG + tig0041738:3597-3616 Msa1461770:CDS 35.0%
TCCTGAAATGAAATGATACG+AGG - tig0041738:3601-3620 Msa1461770:intergenic 35.0%
!! CTTTAAGATAGCCAAGAACA+TGG - tig0041738:3678-3697 Msa1461770:intergenic 35.0%
AATGATCTATATGAGCTCAC+TGG - tig0041738:3782-3801 Msa1461770:intergenic 35.0%
AGTGAGCTCATATAGATCAT+TGG + tig0041738:3781-3800 Msa1461770:intron 35.0%
!! AATTTTATCTGACTGGCCAT+GGG - tig0041738:3816-3835 Msa1461770:intergenic 35.0%
TTGTTTCCTTATCCAAATGG+AGG + tig0041738:3834-3853 Msa1461770:CDS 35.0%
TAAGATCCTCCATTTGGATA+AGG - tig0041738:3843-3862 Msa1461770:intergenic 35.0%
! GTGAGTCTGATGATGAAATT+AGG + tig0041738:3902-3921 Msa1461770:intron 35.0%
TGTTACCTTTCATTCTCTTC+AGG + tig0041738:3975-3994 Msa1461770:intron 35.0%
! AGTATTGTTCAAGTTTGTGC+GGG + tig0041738:4276-4295 Msa1461770:intron 35.0%
TGAATTACACTGTATCCATC+AGG - tig0041738:4366-4385 Msa1461770:intergenic 35.0%
ACAGTGTAATTCAAATGAGC+AGG + tig0041738:4373-4392 Msa1461770:intron 35.0%
! AGGATGTTGCCTTTTTGTTA+TGG + tig0041738:4393-4412 Msa1461770:intron 35.0%
TAATATACCGAGCTAGAGTA+AGG + tig0041738:4529-4548 Msa1461770:intron 35.0%
! GTGCCAATTTTATGCATGAT+AGG - tig0041738:4666-4685 Msa1461770:intergenic 35.0%
!! TAGGTATTTAGCTTTGGATC+TGG + tig0041738:4720-4739 Msa1461770:intron 35.0%
TAACAATGCATCCAGTAACT+GGG - tig0041738:4790-4809 Msa1461770:intergenic 35.0%
ATAACAATGCATCCAGTAAC+TGG - tig0041738:4791-4810 Msa1461770:intergenic 35.0%
! TATATGCCTTGTTGCAATGT+AGG + tig0041738:4816-4835 Msa1461770:intron 35.0%
TTATCATGTTTCCCTGTTTC+AGG + tig0041738:4906-4925 Msa1461770:intron 35.0%
AATCATGTCTACCTGAAACA+GGG - tig0041738:4920-4939 Msa1461770:intergenic 35.0%
GCGGAGAAATTAAAGATACA+TGG - tig0041738:5089-5108 Msa1461770:intergenic 35.0%
TGCTCAAGAGACAAAAAAAG+TGG - tig0041738:5444-5463 Msa1461770:intergenic 35.0%
GTCTATTGTGGATGAATTCA+TGG + tig0041738:5578-5597 Msa1461770:CDS 35.0%
TTGAGGATTTCCAAATGAAG+TGG + tig0041738:5715-5734 Msa1461770:CDS 35.0%
TGAGGATTTCCAAATGAAGT+GGG + tig0041738:5716-5735 Msa1461770:CDS 35.0%
TTTCAAAAGCCCACTTCATT+TGG - tig0041738:5728-5747 Msa1461770:intergenic 35.0%
CAGTAGTTACTTCAAGAACA+CGG - tig0041738:5856-5875 Msa1461770:intergenic 35.0%
AAGATAGTTATAGTTGGAGC+TGG + tig0041738:5993-6012 Msa1461770:CDS 35.0%
AGATAGTTATAGTTGGAGCT+GGG + tig0041738:5994-6013 Msa1461770:CDS 35.0%
GACGGAACAATAAAACAAAC+TGG - tig0041738:6061-6080 Msa1461770:intergenic 35.0%
AATATCATGTAAGGAAGGAG+AGG - tig0041738:6135-6154 Msa1461770:intergenic 35.0%
TGATGTTACCTCGTGATTAT+TGG + tig0041738:6365-6384 Msa1461770:intron 35.0%
AAAATGAGCCAATAATCACG+AGG - tig0041738:6376-6395 Msa1461770:intergenic 35.0%
CTTATCAACAATGGCTGAAT+CGG - tig0041738:6534-6553 Msa1461770:intergenic 35.0%
AAAAATCCAAGAGACCTTGA+AGG + tig0041738:6654-6673 Msa1461770:CDS 35.0%
AAAATCCAAGAGACCTTGAA+GGG + tig0041738:6655-6674 Msa1461770:CDS 35.0%
! AATGCTCCTGAATTTGTTTG+AGG + tig0041738:6710-6729 Msa1461770:intron 35.0%
TTGTTTGAGGAAAACTCCAT+TGG + tig0041738:6723-6742 Msa1461770:intron 35.0%
AGACACTGTCAGAGTAAAAA+AGG - tig0041738:6960-6979 Msa1461770:intergenic 35.0%
TAATTGTTGGGATTCAACTC+AGG + tig0041738:7045-7064 Msa1461770:intron 35.0%
! ATTCATAGTGGGATTAGACA+TGG - tig0041738:7119-7138 Msa1461770:intergenic 35.0%
ATGTCTAATCCCACTATGAA+TGG + tig0041738:7118-7137 Msa1461770:CDS 35.0%
GAAAACATAGTGTTTGCAAG+TGG + tig0041738:7263-7282 Msa1461770:CDS 35.0%
ACATCTTGTGGTACAAAGTT+TGG + tig0041738:7400-7419 Msa1461770:intron 35.0%
!! TGTTGTTGGCTTGATTTACA+TGG - tig0041738:7503-7522 Msa1461770:intergenic 35.0%
GCCTTTGAATGAAAATGTTG+GGG + tig0041738:7573-7592 Msa1461770:intron 35.0%
! ACCCCAACATTTTCATTCAA+AGG - tig0041738:7577-7596 Msa1461770:intergenic 35.0%
CTATTGTAACCTTCCATTTC+AGG + tig0041738:7602-7621 Msa1461770:intron 35.0%
TATAACAGATGGAATGTTGC+AGG + tig0041738:7660-7679 Msa1461770:CDS 35.0%
AGCATCTGAATGGTATAGTT+TGG + tig0041738:7684-7703 Msa1461770:intron 35.0%
ACAGAGGAAGATATCCAAAA+AGG + tig0041738:8110-8129 Msa1461770:CDS 35.0%
TCTTGTATCCATCCATTGAT+AGG + tig0041738:8135-8154 Msa1461770:CDS 35.0%
GAACATTACCTATCAATGGA+TGG - tig0041738:8146-8165 Msa1461770:intergenic 35.0%
TATACGAAATGTTACAGCAG+AGG + tig0041738:8364-8383 Msa1461770:CDS 35.0%
!! GGACTGTTTCTAATCATGTT+TGG - tig0041738:8575-8594 Msa1461770:intergenic 35.0%
!! AGGTTTGGTCAATTTTGCAA+TGG - tig0041738:8596-8615 Msa1461770:intergenic 35.0%
GGTGCGAAATCTCTTTGATT+TGG + tig0041738:2583-2602 Msa1461770:five_prime_UTR 40.0%
CCACGTTTATGAACCATACA+CGG - tig0041738:2679-2698 Msa1461770:intergenic 40.0%
TCCAAACCAGTGGTTAAGAA+CGG - tig0041738:3480-3499 Msa1461770:intergenic 40.0%
CCGGATTTCCTTTAACTGAA+AGG + tig0041738:3545-3564 Msa1461770:CDS 40.0%
TAACTGAAAGGGATCGTTTG+GGG + tig0041738:3557-3576 Msa1461770:CDS 40.0%
ATGAAATGATACGAGGAGGA+AGG - tig0041738:3594-3613 Msa1461770:intergenic 40.0%
TCATTGGAGAAGAATACCCA+TGG + tig0041738:3797-3816 Msa1461770:CDS 40.0%
!! CAATTTTATCTGACTGGCCA+TGG - tig0041738:3817-3836 Msa1461770:intergenic 40.0%
AAGTGCCTGAAGAGAATGAA+AGG - tig0041738:3983-4002 Msa1461770:intergenic 40.0%
GCACTAAAATACATTCCACG+TGG - tig0041738:4093-4112 Msa1461770:intergenic 40.0%
CAATTAAATACCTGAGGAGC+TGG - tig0041738:4156-4175 Msa1461770:intergenic 40.0%
AAATATTTGGCGCAGCTAAC+TGG - tig0041738:4421-4440 Msa1461770:intergenic 40.0%
TGCATGTAGGTAAGAACAGA+GGG + tig0041738:4552-4571 Msa1461770:intron 40.0%
TTGGTAAATGTCCCAGTTAC+TGG + tig0041738:4776-4795 Msa1461770:intron 40.0%
AAACCTCCTACATTGCAACA+AGG - tig0041738:4825-4844 Msa1461770:intergenic 40.0%
! GTTGCAATGTAGGAGGTTTT+TGG + tig0041738:4826-4845 Msa1461770:intron 40.0%
CAATCATGTCTACCTGAAAC+AGG - tig0041738:4921-4940 Msa1461770:intergenic 40.0%
GACATGATTGTCTTGACAGA+TGG + tig0041738:4931-4950 Msa1461770:CDS 40.0%
ACAGATGGTAGTCGTATTCT+TGG + tig0041738:4946-4965 Msa1461770:CDS 40.0%
CAGATGGTAGTCGTATTCTT+GGG + tig0041738:4947-4966 Msa1461770:CDS 40.0%
!! CAAGGCATTGCAATACCTAT+AGG + tig0041738:4988-5007 Msa1461770:CDS 40.0%
!! TACTCTTTGTGGGTTGATAC+CGG - tig0041738:5040-5059 Msa1461770:intergenic 40.0%
GATACATGGAGAGTGAGTAA+GGG - tig0041738:5075-5094 Msa1461770:intergenic 40.0%
AGATACATGGAGAGTGAGTA+AGG - tig0041738:5076-5095 Msa1461770:intergenic 40.0%
CATAAGTTAACGAGAGTTGC+TGG - tig0041738:5167-5186 Msa1461770:intergenic 40.0%
GTTCCAACATCCAACATGAT+CGG - tig0041738:5224-5243 Msa1461770:intergenic 40.0%
TTGCTTTACAAACTGGAGGA+AGG + tig0041738:5359-5378 Msa1461770:intron 40.0%
! ATTTAGGACTTCGACAACCT+AGG + tig0041738:5535-5554 Msa1461770:CDS 40.0%
!! TGAGGAGTATCTGTCTATTG+TGG + tig0041738:5566-5585 Msa1461770:CDS 40.0%
CTTATGGCGATATCGTTTCA+GGG - tig0041738:5751-5770 Msa1461770:intergenic 40.0%
ACTTATGGCGATATCGTTTC+AGG - tig0041738:5752-5771 Msa1461770:intergenic 40.0%
!!! AGTTTTTTGGCAGCCTTGTT+AGG - tig0041738:6110-6129 Msa1461770:intergenic 40.0%
TAACAAGGCTGCCAAAAAAC+TGG + tig0041738:6109-6128 Msa1461770:intron 40.0%
AAGCAGTTTCAAGGATGTCA+GGG + tig0041738:6205-6224 Msa1461770:CDS 40.0%
! GCTCTTTGGCATATCTGTTT+TGG + tig0041738:6484-6503 Msa1461770:intron 40.0%
GGATTCAACTCAGGTTCTTA+AGG + tig0041738:7054-7073 Msa1461770:intron 40.0%
TTAGACATGGCAAAGATAGC+CGG - tig0041738:7106-7125 Msa1461770:intergenic 40.0%
CTCAGATATGGAGGCTATAT+AGG + tig0041738:7372-7391 Msa1461770:intron 40.0%
TGTACAGGAAATGGAAGAGT+TGG + tig0041738:7477-7496 Msa1461770:intron 40.0%
TGGAAACAGGTACATGTTGT+TGG - tig0041738:7517-7536 Msa1461770:intergenic 40.0%
AACAACATGTACCTGTTTCC+AGG + tig0041738:7516-7535 Msa1461770:CDS 40.0%
ACAACATGTACCTGTTTCCA+GGG + tig0041738:7517-7536 Msa1461770:CDS 40.0%
GTAACCTTCCATTTCAGGAT+TGG + tig0041738:7607-7626 Msa1461770:intron 40.0%
!! TTCCATTTCAGGATTGGCTT+GGG + tig0041738:7613-7632 Msa1461770:intron 40.0%
GGTGCTCATCATATAACAGA+TGG + tig0041738:7649-7668 Msa1461770:CDS 40.0%
TGTTTGATGTTTGTAGGGCT+TGG + tig0041738:7735-7754 Msa1461770:intron 40.0%
TCTCTACATGTCTTGATGTG+TGG + tig0041738:7846-7865 Msa1461770:intron 40.0%
TACATGTCTTGATGTGTGGT+GGG + tig0041738:7850-7869 Msa1461770:intron 40.0%
TGAAAGTAGTGTAGAGCTAG+TGG - tig0041738:7932-7951 Msa1461770:intergenic 40.0%
TCAGAAACGTGCTAAGGAAA+AGG - tig0041738:8216-8235 Msa1461770:intergenic 40.0%
AGCAATTCAGAAACGTGCTA+AGG - tig0041738:8222-8241 Msa1461770:intergenic 40.0%
! CATTGCATATTCTGGTTGAG+TGG + tig0041738:8512-8531 Msa1461770:intron 40.0%
TGCATTTCAGGATGATACTG+TGG + tig0041738:8707-8726 Msa1461770:intron 40.0%
AGTACGTCAGAGGAAATATG+TGG + tig0041738:8730-8749 Msa1461770:CDS 40.0%
ACAGCAATTCATGACTGACA+AGG + tig0041738:8826-8845 Msa1461770:three_prime_UTR 40.0%
! GACAAGGTTTAGTGAGTTGA+AGG + tig0041738:8842-8861 Msa1461770:three_prime_UTR 40.0%
! GTGAGTTGAAGGTCGAATAA+TGG + tig0041738:8853-8872 Msa1461770:three_prime_UTR 40.0%
AGTTGAAGGTCGAATAATGG+AGG + tig0041738:8856-8875 Msa1461770:three_prime_UTR 40.0%
! GTTGAAGGTCGAATAATGGA+GGG + tig0041738:8857-8876 Msa1461770:three_prime_UTR 40.0%
! TTGAAGGTCGAATAATGGAG+GGG + tig0041738:8858-8877 Msa1461770:three_prime_UTR 40.0%
CAATTTACGGCTGCAACAAA+GGG - tig0041738:8914-8933 Msa1461770:intergenic 40.0%
ACAATTTACGGCTGCAACAA+AGG - tig0041738:8915-8934 Msa1461770:intergenic 40.0%
AACAACTGTCTATCACAGTG+TGG - tig0041738:9001-9020 Msa1461770:intergenic 40.0%
TTGCAGGTGAGAATTGAGGT+AGG - tig0041738:2554-2573 Msa1387050:intergenic 45.0%
TCTCACCTGCAACGTGAAAA+AGG + tig0041738:2562-2581 Msa1461770:five_prime_UTR 45.0%
TTATGAACCATACACGGAGC+AGG - tig0041738:2673-2692 Msa1461770:intergenic 45.0%
CCGTGTATGGTTCATAAACG+TGG + tig0041738:2676-2695 Msa1461770:CDS 45.0%
!!! TTCAGTGTCACTTTTGGTCC+TGG + tig0041738:3393-3412 Msa1461770:intron 45.0%
! ACTTTTGGTCCTGGATACTG+AGG + tig0041738:3402-3421 Msa1461770:intron 45.0%
CCAAACCAGTGGTTAAGAAC+GGG - tig0041738:3479-3498 Msa1461770:intergenic 45.0%
AAATGATACGAGGAGGAAGG+AGG - tig0041738:3591-3610 Msa1461770:intergenic 45.0%
GCTGTATGCATCCATGTTCT+TGG + tig0041738:3664-3683 Msa1461770:intron 45.0%
TGACACACTAACCCAACTGT+AGG - tig0041738:4045-4064 Msa1461770:intergenic 45.0%
CATTATTCCCTTCTATGGGC+TGG + tig0041738:4242-4261 Msa1461770:intron 45.0%
AGATGTTCCAGCCCATAGAA+GGG - tig0041738:4252-4271 Msa1461770:intergenic 45.0%
TAGATGTTCCAGCCCATAGA+AGG - tig0041738:4253-4272 Msa1461770:intergenic 45.0%
! TTGTTCAAGTTTGTGCGGGT+TGG + tig0041738:4280-4299 Msa1461770:intron 45.0%
ACATGCACCTTACTCTAGCT+CGG - tig0041738:4539-4558 Msa1461770:intergenic 45.0%
AGCTAGAGTAAGGTGCATGT+AGG + tig0041738:4539-4558 Msa1461770:intron 45.0%
GTGCATGTAGGTAAGAACAG+AGG + tig0041738:4551-4570 Msa1461770:intron 45.0%
GCATGTAGGTAAGAACAGAG+GGG + tig0041738:4553-4572 Msa1461770:intron 45.0%
GAGGGGAGCTAGGTAAATAT+AGG + tig0041738:4570-4589 Msa1461770:intron 45.0%
! ATGCCTTGTTGCAATGTAGG+AGG + tig0041738:4819-4838 Msa1461770:intron 45.0%
GGTAGTCGTATTCTTGGGTT+AGG + tig0041738:4952-4971 Msa1461770:CDS 45.0%
! ATTCTTGGGTTAGGTGACCT+TGG + tig0041738:4961-4980 Msa1461770:CDS 45.0%
TTAGGTGACCTTGGAGTTCA+AGG + tig0041738:4970-4989 Msa1461770:CDS 45.0%
TTGCAATGCCTTGAACTCCA+AGG - tig0041738:4981-5000 Msa1461770:intergenic 45.0%
GATATGTATGTTGCAGCTGC+CGG + tig0041738:5018-5037 Msa1461770:CDS 45.0%
GTATGCTTGTTTCCCAACTG+TGG + tig0041738:5189-5208 Msa1461770:intron 45.0%
GCAGATACTTCCGATCATGT+TGG + tig0041738:5211-5230 Msa1461770:intron 45.0%
CTTCCGATCATGTTGGATGT+TGG + tig0041738:5218-5237 Msa1461770:CDS 45.0%
CATACCTGCACAATAGCCTT+CGG - tig0041738:5624-5643 Msa1461770:intergenic 45.0%
ATTGTCCAATAGGGTACAGC+TGG + tig0041738:5900-5919 Msa1461770:intron 45.0%
TAGTTATAGTTGGAGCTGGG+AGG + tig0041738:5997-6016 Msa1461770:CDS 45.0%
! AGCGATAACGAGAAGCATGA+CGG - tig0041738:6079-6098 Msa1461770:intergenic 45.0%
! TCGCTACTTTCTGCCTAACA+AGG + tig0041738:6094-6113 Msa1461770:intron 45.0%
AGGACTTGGCGTTCTTAACA+TGG + tig0041738:6176-6195 Msa1461770:CDS 45.0%
CTGACATCCTTGAAACTGCT+TGG - tig0041738:6206-6225 Msa1461770:intergenic 45.0%
CAAGCAGTTTCAAGGATGTC+AGG + tig0041738:6204-6223 Msa1461770:CDS 45.0%
CAACAATGGCTGAATCGGAT+AGG - tig0041738:6529-6548 Msa1461770:intergenic 45.0%
TTAGCAAATGGAACTGCAGC+TGG - tig0041738:6636-6655 Msa1461770:intergenic 45.0%
GGGTGCTAGTATCATTGAAG+TGG + tig0041738:6686-6705 Msa1461770:CDS 45.0%
!! ATGTGCTGCTTGGATTGTCT+GGG + tig0041738:6903-6922 Msa1461770:CDS 45.0%
! TGGTGGTGTCTTTAATGAGC+AGG + tig0041738:6928-6947 Msa1461770:CDS 45.0%
ATGTACCTGTTTCCAGGGTA+GGG + tig0041738:7522-7541 Msa1461770:intron 45.0%
CAAGCCAATCCTGAAATGGA+AGG - tig0041738:7614-7633 Msa1461770:intergenic 45.0%
!! CTTCCATTTCAGGATTGGCT+TGG + tig0041738:7612-7631 Msa1461770:intron 45.0%
ATCCCAAGCCAATCCTGAAA+TGG - tig0041738:7618-7637 Msa1461770:intergenic 45.0%
CTACATGTCTTGATGTGTGG+TGG + tig0041738:7849-7868 Msa1461770:intron 45.0%
ACATGTCTTGATGTGTGGTG+GGG + tig0041738:7851-7870 Msa1461770:intron 45.0%
TAGTGTAGAGCTAGTGGCAA+GGG - tig0041738:7926-7945 Msa1461770:intergenic 45.0%
ATGTATGAAGCAAGGCTGTC+AGG - tig0041738:8089-8108 Msa1461770:intergenic 45.0%
CCTCTGTCATGTATGAAGCA+AGG - tig0041738:8097-8116 Msa1461770:intergenic 45.0%
CCTTGCTTCATACATGACAG+AGG + tig0041738:8094-8113 Msa1461770:CDS 45.0%
CGAAATGTTACAGCAGAGGT+CGG + tig0041738:8368-8387 Msa1461770:CDS 45.0%
GAAATGTTACAGCAGAGGTC+GGG + tig0041738:8369-8388 Msa1461770:CDS 45.0%
AAATGTTACAGCAGAGGTCG+GGG + tig0041738:8370-8389 Msa1461770:CDS 45.0%
GTTTGCTTTGGCTGCATTTC+AGG + tig0041738:8695-8714 Msa1461770:intron 45.0%
TGTGTGTGTGAGAGAGAGAG+AGG - tig0041738:2441-2460 Msa1387050:intergenic 50.0%
CACGTTGCAGGTGAGAATTG+AGG - tig0041738:2558-2577 Msa1387050:intergenic 50.0%
!! TCGCACCTTTTTCACGTTGC+AGG - tig0041738:2570-2589 Msa1461770:intergenic 50.0%
AATGTGGAAGGTGACGCGTT+TGG + tig0041738:2609-2628 Msa1461770:exon 50.0%
TGATGCCCGTTCTTAACCAC+TGG + tig0041738:3471-3490 Msa1461770:intron 50.0%
! CCCGTTCTTAACCACTGGTT+TGG + tig0041738:3476-3495 Msa1461770:intron 50.0%
TTATAACTGGCCAGCTCCTC+AGG + tig0041738:4143-4162 Msa1461770:CDS 50.0%
!! CGGAAGTATCTGCCACAGTT+GGG - tig0041738:5204-5223 Msa1461770:intergenic 50.0%
!! TCGGAAGTATCTGCCACAGT+TGG - tig0041738:5205-5224 Msa1461770:intergenic 50.0%
AGGACTTCGACAACCTAGGT+TGG + tig0041738:5539-5558 Msa1461770:CDS 50.0%
! CTTCGACAACCTAGGTTGGA+AGG + tig0041738:5543-5562 Msa1461770:CDS 50.0%
! ACAACCTAGGTTGGAAGGTG+AGG + tig0041738:5548-5567 Msa1461770:CDS 50.0%
TACTCCTCACCTTCCAACCT+AGG - tig0041738:5555-5574 Msa1461770:intergenic 50.0%
CAACACCAGCTGTACCCTAT+TGG - tig0041738:5908-5927 Msa1461770:intergenic 50.0%
! TGTTGCACTTGCTGGACTAC+TGG + tig0041738:5923-5942 Msa1461770:CDS 50.0%
! GTTGCACTTGCTGGACTACT+GGG + tig0041738:5924-5943 Msa1461770:CDS 50.0%
CTGGGAACTGTAAGATCCCA+AGG + tig0041738:5942-5961 Msa1461770:CDS 50.0%
ATCAGACAACGGTCGACCTT+GGG - tig0041738:5961-5980 Msa1461770:intergenic 50.0%
AATCAGACAACGGTCGACCT+TGG - tig0041738:5962-5981 Msa1461770:intergenic 50.0%
!!! GGAAGGAGAGGCCAGTTTTT+TGG - tig0041738:6123-6142 Msa1461770:intergenic 50.0%
TGGCTGTCCAAGCAGTTTCA+AGG + tig0041738:6196-6215 Msa1461770:CDS 50.0%
ATGACGTGATGCCTGAATGC+AGG + tig0041738:6578-6597 Msa1461770:intron 50.0%
TGACGTGATGCCTGAATGCA+GGG + tig0041738:6579-6598 Msa1461770:intron 50.0%
! GTTAAGCCACATGTGCTGCT+TGG + tig0041738:6893-6912 Msa1461770:CDS 50.0%
GACAATCCAAGCAGCACATG+TGG - tig0041738:6902-6921 Msa1461770:intergenic 50.0%
!! CATGTGCTGCTTGGATTGTC+TGG + tig0041738:6902-6921 Msa1461770:CDS 50.0%
!! TGTGCTGCTTGGATTGTCTG+GGG + tig0041738:6904-6923 Msa1461770:CDS 50.0%
CATGTACCTGTTTCCAGGGT+AGG + tig0041738:7521-7540 Msa1461770:intron 50.0%
TATAAGCTCACACCCTACCC+TGG - tig0041738:7537-7556 Msa1461770:intergenic 50.0%
TGTTGCAGGCAGCATCTGAA+TGG + tig0041738:7674-7693 Msa1461770:CDS 50.0%
ATGGTATAGTTTGGCGCCAG+TGG + tig0041738:7693-7712 Msa1461770:intron 50.0%
GTAGTGTAGAGCTAGTGGCA+AGG - tig0041738:7927-7946 Msa1461770:intergenic 50.0%
TGAGTGGCATCGCATCAGAA+GGG - tig0041738:8032-8051 Msa1461770:intergenic 50.0%
TTGAGTGGCATCGCATCAGA+AGG - tig0041738:8033-8052 Msa1461770:intergenic 50.0%
CTACGTGCAGCAATTGCTGA+AGG + tig0041738:8401-8420 Msa1461770:CDS 50.0%
TGCAGCAATTGCTGAAGGAC+TGG + tig0041738:8406-8425 Msa1461770:CDS 50.0%
!! ATTGCTGAAGGACTGGCTGA+AGG + tig0041738:8413-8432 Msa1461770:CDS 50.0%
GATACTGTGGAGTACGTCAG+AGG + tig0041738:8720-8739 Msa1461770:CDS 50.0%
GAACGAGAGGGCAATACTCA+GGG - tig0041738:8758-8777 Msa1461770:intergenic 50.0%
TGAACGAGAGGGCAATACTC+AGG - tig0041738:8759-8778 Msa1461770:intergenic 50.0%
! AGGTCGAATAATGGAGGGGA+AGG + tig0041738:8862-8881 Msa1461770:three_prime_UTR 50.0%
! GGTCGAATAATGGAGGGGAA+GGG + tig0041738:8863-8882 Msa1461770:three_prime_UTR 50.0%
! GTCGAATAATGGAGGGGAAG+GGG + tig0041738:8864-8883 Msa1461770:three_prime_UTR 50.0%
! AATAATGGAGGGGAAGGGGA+AGG + tig0041738:8868-8887 Msa1461770:three_prime_UTR 50.0%
GGGTTATATAGGCGTCCACG+TGG + tig0041738:4075-4094 Msa1461770:CDS 55.0%
GGTAAGAACAGAGGGGAGCT+AGG + tig0041738:4560-4579 Msa1461770:intron 55.0%
TGGAAGCTGTTCACGCACGA+TGG + tig0041738:5598-5617 Msa1461770:CDS 55.0%
ATGGCCGAAGGCTATTGTGC+AGG + tig0041738:5617-5636 Msa1461770:CDS 55.0%
!! ACAGCTGGTGTTGCACTTGC+TGG + tig0041738:5915-5934 Msa1461770:CDS 55.0%
!! TTTTGCCCGACTTGCAGTGC+AGG + tig0041738:6156-6175 Msa1461770:intron 55.0%
CAAGTCCTGCACTGCAAGTC+GGG - tig0041738:6164-6183 Msa1461770:intergenic 55.0%
CCAAGTCCTGCACTGCAAGT+CGG - tig0041738:6165-6184 Msa1461770:intergenic 55.0%
GACGTGATGCCTGAATGCAG+GGG + tig0041738:6580-6599 Msa1461770:intron 55.0%
GCAAGCCCTTCAAGGTCTCT+TGG - tig0041738:6663-6682 Msa1461770:intergenic 55.0%
AGACCTTGAAGGGCTTGCAG+AGG + tig0041738:6665-6684 Msa1461770:CDS 55.0%
GACCTTGAAGGGCTTGCAGA+GGG + tig0041738:6666-6685 Msa1461770:CDS 55.0%
! CTGCTTGGATTGTCTGGGGT+TGG + tig0041738:6908-6927 Msa1461770:CDS 55.0%
! CTTGGATTGTCTGGGGTTGG+TGG + tig0041738:6911-6930 Msa1461770:CDS 55.0%
TCACACCCTACCCTGGAAAC+AGG - tig0041738:7530-7549 Msa1461770:intergenic 55.0%
GGCTTGGGATCACTACTGTC+TGG + tig0041738:7628-7647 Msa1461770:CDS 55.0%
!! GAAGGACTGGCTGAAGGACA+CGG + tig0041738:8419-8438 Msa1461770:CDS 55.0%
!! AAGGACTGGCTGAAGGACAC+GGG + tig0041738:8420-8439 Msa1461770:CDS 55.0%
TGGCTGCATCATCGCGATCG+CGG + tig0041738:2629-2648 Msa1461770:CDS 60.0%
GCGATCGCGGTTGTTCTCGA+CGG + tig0041738:2642-2661 Msa1461770:CDS 60.0%
GGCGATACCTGCTCCGTGTA+TGG + tig0041738:2663-2682 Msa1461770:CDS 60.0%
! AGGGATCGTTTGGGGCTTCG+AGG + tig0041738:3565-3584 Msa1461770:CDS 60.0%
TGTTCACGCACGATGGCCGA+AGG + tig0041738:5605-5624 Msa1461770:CDS 60.0%
! CCGACTTGCAGTGCAGGACT+TGG + tig0041738:6162-6181 Msa1461770:intron 60.0%
CGTGACAAGCCCCTGCATTC+AGG - tig0041738:6592-6611 Msa1461770:intergenic 60.0%
AGGGGCTTGTCACGACAGAG+AGG + tig0041738:6598-6617 Msa1461770:intron 60.0%
CACCCTCTGCAAGCCCTTCA+AGG - tig0041738:6671-6690 Msa1461770:intergenic 60.0%
!! AGGACTGGCTGAAGGACACG+GGG + tig0041738:8421-8440 Msa1461770:CDS 60.0%
!! CTGAAGGACACGGGGGTGTT+GGG + tig0041738:8429-8448 Msa1461770:CDS 60.0%
!! GGACTGGCTGAAGGACACGG+GGG + tig0041738:8422-8441 Msa1461770:CDS 65.0%
! GCTGAAGGACACGGGGGTGT+TGG + tig0041738:8428-8447 Msa1461770:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0041738 gene 2438 9081 2438 ID=Msa1461770;Name=Msa1461770
tig0041738 mRNA 2438 9081 2438 ID=Msa1461770-mRNA-1;Parent=Msa1461770;Name=Msa1461770-mRNA-1;_AED=0.16;_eAED=0.16;_QI=172|1|1|1|1|0.94|19|293|601
tig0041738 exon 2438 2732 2438 ID=Msa1461770-mRNA-1:exon:23327;Parent=Msa1461770-mRNA-1
tig0041738 exon 3541 3637 3541 ID=Msa1461770-mRNA-1:exon:23328;Parent=Msa1461770-mRNA-1
tig0041738 exon 3783 3901 3783 ID=Msa1461770-mRNA-1:exon:23329;Parent=Msa1461770-mRNA-1
tig0041738 exon 3997 4164 3997 ID=Msa1461770-mRNA-1:exon:23330;Parent=Msa1461770-mRNA-1
tig0041738 exon 4928 5056 4928 ID=Msa1461770-mRNA-1:exon:23331;Parent=Msa1461770-mRNA-1
tig0041738 exon 5215 5275 5215 ID=Msa1461770-mRNA-1:exon:23332;Parent=Msa1461770-mRNA-1
tig0041738 exon 5535 5638 5535 ID=Msa1461770-mRNA-1:exon:23333;Parent=Msa1461770-mRNA-1
tig0041738 exon 5714 5797 5714 ID=Msa1461770-mRNA-1:exon:23334;Parent=Msa1461770-mRNA-1
tig0041738 exon 5912 6018 5912 ID=Msa1461770-mRNA-1:exon:23335;Parent=Msa1461770-mRNA-1
tig0041738 exon 6173 6275 6173 ID=Msa1461770-mRNA-1:exon:23336;Parent=Msa1461770-mRNA-1
tig0041738 exon 6600 6707 6600 ID=Msa1461770-mRNA-1:exon:23337;Parent=Msa1461770-mRNA-1
tig0041738 exon 6884 6949 6884 ID=Msa1461770-mRNA-1:exon:23338;Parent=Msa1461770-mRNA-1
tig0041738 exon 7067 7139 7067 ID=Msa1461770-mRNA-1:exon:23339;Parent=Msa1461770-mRNA-1
tig0041738 exon 7225 7311 7225 ID=Msa1461770-mRNA-1:exon:23340;Parent=Msa1461770-mRNA-1
tig0041738 exon 7484 7538 7484 ID=Msa1461770-mRNA-1:exon:23341;Parent=Msa1461770-mRNA-1
tig0041738 exon 7624 7695 7624 ID=Msa1461770-mRNA-1:exon:23342;Parent=Msa1461770-mRNA-1
tig0041738 exon 8094 8156 8094 ID=Msa1461770-mRNA-1:exon:23343;Parent=Msa1461770-mRNA-1
tig0041738 exon 8364 8478 8364 ID=Msa1461770-mRNA-1:exon:23344;Parent=Msa1461770-mRNA-1
tig0041738 exon 8717 9081 8717 ID=Msa1461770-mRNA-1:exon:23345;Parent=Msa1461770-mRNA-1
tig0041738 five_prime_UTR 2438 2609 2438 ID=Msa1461770-mRNA-1:five_prime_utr;Parent=Msa1461770-mRNA-1
tig0041738 CDS 2610 2732 2610 ID=Msa1461770-mRNA-1:cds;Parent=Msa1461770-mRNA-1
tig0041738 CDS 3541 3637 3541 ID=Msa1461770-mRNA-1:cds;Parent=Msa1461770-mRNA-1
tig0041738 CDS 3783 3901 3783 ID=Msa1461770-mRNA-1:cds;Parent=Msa1461770-mRNA-1
tig0041738 CDS 3997 4164 3997 ID=Msa1461770-mRNA-1:cds;Parent=Msa1461770-mRNA-1
tig0041738 CDS 4928 5056 4928 ID=Msa1461770-mRNA-1:cds;Parent=Msa1461770-mRNA-1
tig0041738 CDS 5215 5275 5215 ID=Msa1461770-mRNA-1:cds;Parent=Msa1461770-mRNA-1
tig0041738 CDS 5535 5638 5535 ID=Msa1461770-mRNA-1:cds;Parent=Msa1461770-mRNA-1
tig0041738 CDS 5714 5797 5714 ID=Msa1461770-mRNA-1:cds;Parent=Msa1461770-mRNA-1
tig0041738 CDS 5912 6018 5912 ID=Msa1461770-mRNA-1:cds;Parent=Msa1461770-mRNA-1
tig0041738 CDS 6173 6275 6173 ID=Msa1461770-mRNA-1:cds;Parent=Msa1461770-mRNA-1
tig0041738 CDS 6600 6707 6600 ID=Msa1461770-mRNA-1:cds;Parent=Msa1461770-mRNA-1
tig0041738 CDS 6884 6949 6884 ID=Msa1461770-mRNA-1:cds;Parent=Msa1461770-mRNA-1
tig0041738 CDS 7067 7139 7067 ID=Msa1461770-mRNA-1:cds;Parent=Msa1461770-mRNA-1
tig0041738 CDS 7225 7311 7225 ID=Msa1461770-mRNA-1:cds;Parent=Msa1461770-mRNA-1
tig0041738 CDS 7484 7538 7484 ID=Msa1461770-mRNA-1:cds;Parent=Msa1461770-mRNA-1
tig0041738 CDS 7624 7695 7624 ID=Msa1461770-mRNA-1:cds;Parent=Msa1461770-mRNA-1
tig0041738 CDS 8094 8156 8094 ID=Msa1461770-mRNA-1:cds;Parent=Msa1461770-mRNA-1
tig0041738 CDS 8364 8478 8364 ID=Msa1461770-mRNA-1:cds;Parent=Msa1461770-mRNA-1
tig0041738 CDS 8717 8788 8717 ID=Msa1461770-mRNA-1:cds;Parent=Msa1461770-mRNA-1
tig0041738 three_prime_UTR 8789 9081 8789 ID=Msa1461770-mRNA-1:three_prime_utr;Parent=Msa1461770-mRNA-1
Gene Sequence

>Msa1461770

ATGTGGAAGGTGACGCGTTTGGCTGCATCATCGCGATCGCGGTTGTTCTCGACGGCGATACCTGCTCCGTGTATGGTTCATAAACGTGGTGCTGATATTCTTCATGATCCTTGGTTCAATAAGGATACCGGATTTCCTTTAACTGAAAGGGATCGTTTGGGGCTTCGAGGCCTCCTTCCTCCTCGTATCATTTCATTTCAGGAGCAATATGATCGTTTTATGAGCTCATATAGATCATTGGAGAAGAATACCCATGGCCAGTCAGATAAAATTGTTTCCTTATCCAAATGGAGGATCTTAAATAGACTACATGACAGGAATGAGACATTGTACTATAGAGCACTTATTGATAACATCAAAGAATTTGCTCCAATAATTTATACTCCTACAGTTGGGTTAGTGTGTCAAAACTATTGTGGGTTATATAGGCGTCCACGTGGAATGTATTTTAGTGCTAAAGATAAAGGAGAGATGATGTCGATGATTTATAACTGGCCAGCTCCTCAGGTAGACATGATTGTCTTGACAGATGGTAGTCGTATTCTTGGGTTAGGTGACCTTGGAGTTCAAGGCATTGCAATACCTATAGGAAAACTTGATATGTATGTTGCAGCTGCCGGTATCAACCCACAAAGAATACTTCCGATCATGTTGGATGTTGGAACAAACAATCAAAAGCTACTTGATGATCGCCTTTATTTAGGACTTCGACAACCTAGGTTGGAAGGTGAGGAGTATCTGTCTATTGTGGATGAATTCATGGAAGCTGTTCACGCACGATGGCCGAAGGCTATTGTGCAGTTTGAGGATTTCCAAATGAAGTGGGCTTTTGAAACCCTGAAACGATATCGCCATAAGTTTTGCATGTTTAATGATGATATACAGGGTACAGCTGGTGTTGCACTTGCTGGACTACTGGGAACTGTAAGATCCCAAGGTCGACCGTTGTCTGATTTTACGAAACAAAAGATAGTTATAGTTGGAGCTGGGAGTGCAGGACTTGGCGTTCTTAACATGGCTGTCCAAGCAGTTTCAAGGATGTCAGGGTGCAGCGAAACAGCAGCAAAAAGTCAATTTTTCTTAATTGATAAAAATGGGCTTGTCACGACAGAGAGGAGTAATCTAGATCCAGCTGCAGTTCCATTTGCTAAAAATCCAAGAGACCTTGAAGGGCTTGCAGAGGGTGCTAGTATCATTGAAGTGGTTAAGAAGGTTAAGCCACATGTGCTGCTTGGATTGTCTGGGGTTGGTGGTGTCTTTAATGAGCAGGTTCTTAAGGCAATGAGAGAATCTGTTTCAACAAAACCGGCTATCTTTGCCATGTCTAATCCCACTATGAATGCTGAGTGCACTGCTATTGATGCATTTAATCATGCTGGAGAAAACATAGTGTTTGCAAGTGGAAGCCCTTTTGAAAATGTAGATCTTGGAAATGGAAGAGTTGGCCATGTAAATCAAGCCAACAACATGTACCTGTTTCCAGGGATTGGCTTGGGATCACTACTGTCTGGTGCTCATCATATAACAGATGGAATGTTGCAGGCAGCATCTGAATGCCTTGCTTCATACATGACAGAGGAAGATATCCAAAAAGGAATCTTGTATCCATCCATTGATAGTATACGAAATGTTACAGCAGAGGTCGGGGCTGCTGTTCTACGTGCAGCAATTGCTGAAGGACTGGCTGAAGGACACGGGGGTGTTGGGTCCAAAGAACTTGAACATATGTCAGAAGATGATACTGTGGAGTACGTCAGAGGAAATATGTGGTACCCTGAGTATTGCCCTCTCGTTCATGAAAAATGA

Protein sequence

>Msa1461770

MWKVTRLAASSRSRLFSTAIPAPCMVHKRGADILHDPWFNKDTGFPLTERDRLGLRGLLPPRIISFQEQYDRFMSSYRSLEKNTHGQSDKIVSLSKWRILNRLHDRNETLYYRALIDNIKEFAPIIYTPTVGLVCQNYCGLYRRPRGMYFSAKDKGEMMSMIYNWPAPQVDMIVLTDGSRILGLGDLGVQGIAIPIGKLDMYVAAAGINPQRILPIMLDVGTNNQKLLDDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLKRYRHKFCMFNDDIQGTAGVALAGLLGTVRSQGRPLSDFTKQKIVIVGAGSAGLGVLNMAVQAVSRMSGCSETAAKSQFFLIDKNGLVTTERSNLDPAAVPFAKNPRDLEGLAEGASIIEVVKKVKPHVLLGLSGVGGVFNEQVLKAMRESVSTKPAIFAMSNPTMNAECTAIDAFNHAGENIVFASGSPFENVDLGNGRVGHVNQANNMYLFPGIGLGSLLSGAHHITDGMLQAASECLASYMTEEDIQKGILYPSIDSIRNVTAEVGAAVLRAAIAEGLAEGHGGVGSKELEHMSEDDTVEYVRGNMWYPEYCPLVHEK*