Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435280 | XP_024635479.1 | 91.801 | 866 | 30 | 2 | 1 | 844 | 1 | 847 | 0.0 | 1619 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435280 | sp|Q99L90|MCRS1_MOUSE | 32.632 | 190 | 103 | 6 | 666 | 839 | 266 | 446 | 4.27e-17 | 88.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435280 | G7J4N3 | 91.898 | 864 | 31 | 2 | 1 | 844 | 1 | 845 | 0.0 | 1618 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0039750 | Msa0435280 | 0.811834 | 5.742786e-51 | -8.615850e-47 |
| Msa0041790 | Msa0435280 | 0.805362 | 1.384476e-49 | -8.615850e-47 |
| Msa0044530 | Msa0435280 | -0.806707 | 7.216451e-50 | -8.615850e-47 |
| Msa0089540 | Msa0435280 | 0.809659 | 1.696407e-50 | -8.615850e-47 |
| Msa0091220 | Msa0435280 | -0.809908 | 1.499145e-50 | -8.615850e-47 |
| Msa0091240 | Msa0435280 | -0.806281 | 8.875952e-50 | -8.615850e-47 |
| Msa0100890 | Msa0435280 | 0.800271 | 1.558414e-48 | -8.615850e-47 |
| Msa0161960 | Msa0435280 | 0.802164 | 6.388850e-49 | -8.615850e-47 |
| Msa0168380 | Msa0435280 | 0.839630 | 1.412932e-57 | -8.615850e-47 |
| Msa0173250 | Msa0435280 | 0.801299 | 9.615009e-49 | -8.615850e-47 |
| Msa0188740 | Msa0435280 | 0.805374 | 1.377072e-49 | -8.615850e-47 |
| Msa0192050 | Msa0435280 | 0.839894 | 1.205567e-57 | -8.615850e-47 |
| Msa0371350 | Msa0435280 | -0.805628 | 1.217936e-49 | -8.615850e-47 |
| Msa0379480 | Msa0435280 | 0.807809 | 4.215674e-50 | -8.615850e-47 |
| Msa0380590 | Msa0435280 | 0.818149 | 2.279111e-52 | -8.615850e-47 |
| Msa0385030 | Msa0435280 | 0.853020 | 3.149299e-61 | -8.615850e-47 |
| Msa0388250 | Msa0435280 | 0.833172 | 6.212442e-56 | -8.615850e-47 |
| Msa0416210 | Msa0435280 | 0.802264 | 6.092811e-49 | -8.615850e-47 |
| Msa0419420 | Msa0435280 | -0.804600 | 1.998747e-49 | -8.615850e-47 |
| Msa0422820 | Msa0435280 | 0.800915 | 1.152031e-48 | -8.615850e-47 |
| Msa0429970 | Msa0435280 | 0.813181 | 2.914621e-51 | -8.615850e-47 |
| Msa0430130 | Msa0435280 | 0.802692 | 4.972979e-49 | -8.615850e-47 |
| Msa0433630 | Msa0435280 | 0.828930 | 6.837018e-55 | -8.615850e-47 |
| Msa0435280 | Msa0436100 | 0.814837 | 1.257199e-51 | -8.615850e-47 |
| Msa0435280 | Msa0477480 | 0.816173 | 6.337968e-52 | -8.615850e-47 |
| Msa0435280 | Msa0479480 | 0.855199 | 7.405001e-62 | -8.615850e-47 |
| Msa0435280 | Msa0500420 | 0.819333 | 1.227428e-52 | -8.615850e-47 |
| Msa0435280 | Msa0506750 | 0.838467 | 2.826306e-57 | -8.615850e-47 |
| Msa0435280 | Msa0521510 | 0.831973 | 1.231635e-55 | -8.615850e-47 |
| Msa0435280 | Msa0521530 | 0.839540 | 1.490991e-57 | -8.615850e-47 |
| Msa0435280 | Msa0528310 | 0.811958 | 5.395894e-51 | -8.615850e-47 |
| Msa0435280 | Msa0568460 | -0.814244 | 1.700288e-51 | -8.615850e-47 |
| Msa0435280 | Msa0601380 | 0.805365 | 1.382949e-49 | -8.615850e-47 |
| Msa0435280 | Msa0618990 | 0.803619 | 3.198073e-49 | -8.615850e-47 |
| Msa0435280 | Msa0659020 | -0.830149 | 3.455764e-55 | -8.615850e-47 |
| Msa0435280 | Msa0661480 | 0.822360 | 2.470074e-53 | -8.615850e-47 |
| Msa0435280 | Msa0689830 | 0.810925 | 9.043575e-51 | -8.615850e-47 |
| Msa0435280 | Msa0761830 | 0.803351 | 3.633313e-49 | -8.615850e-47 |
| Msa0435280 | Msa0765110 | 0.821690 | 3.530485e-53 | -8.615850e-47 |
| Msa0435280 | Msa0790450 | 0.805481 | 1.307648e-49 | -8.615850e-47 |
| Msa0435280 | Msa0812020 | -0.803785 | 2.953568e-49 | -8.615850e-47 |
| Msa0435280 | Msa0846900 | 0.803643 | 3.161684e-49 | -8.615850e-47 |
| Msa0435280 | Msa0852090 | -0.801011 | 1.100898e-48 | -8.615850e-47 |
| Msa0435280 | Msa0857260 | 0.850596 | 1.533419e-60 | -8.615850e-47 |
| Msa0435280 | Msa0926310 | 0.801715 | 7.900914e-49 | -8.615850e-47 |
| Msa0435280 | Msa1014550 | -0.805218 | 1.484466e-49 | -8.615850e-47 |
| Msa0435280 | Msa1025200 | 0.826934 | 2.065644e-54 | -8.615850e-47 |
| Msa0435280 | Msa1025220 | 0.818349 | 2.053634e-52 | -8.615850e-47 |
| Msa0435280 | Msa1026710 | 0.802191 | 6.305974e-49 | -8.615850e-47 |
| Msa0435280 | Msa1078590 | -0.803559 | 3.289873e-49 | -8.615850e-47 |
| Msa0435280 | Msa1078760 | -0.800561 | 1.360247e-48 | -8.615850e-47 |
| Msa0435280 | Msa1093190 | -0.809229 | 2.098245e-50 | -8.615850e-47 |
| Msa0435280 | Msa1166670 | 0.820679 | 6.038086e-53 | -8.615850e-47 |
| Msa0435280 | Msa1205270 | -0.802563 | 5.286195e-49 | -8.615850e-47 |
| Msa0435280 | Msa1220580 | 0.802012 | 6.863889e-49 | -8.615850e-47 |
| Msa0435280 | Msa1315500 | 0.804382 | 2.219410e-49 | -8.615850e-47 |
| Msa0435280 | Msa1334560 | 0.807208 | 5.655293e-50 | -8.615850e-47 |
| Msa0435280 | Msa1343450 | -0.800535 | 1.377256e-48 | -8.615850e-47 |
| Msa0435280 | Msa1352630 | -0.806913 | 6.529708e-50 | -8.615850e-47 |
| Msa0435280 | Msa1420830 | 0.805914 | 1.060298e-49 | -8.615850e-47 |
| Msa0435280 | Msa1450560 | 0.802697 | 4.961077e-49 | -8.615850e-47 |
| Msa0290800 | Msa0435280 | 0.813293 | 2.754944e-51 | -8.615850e-47 |
| Msa0328870 | Msa0435280 | 0.809262 | 2.064320e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435280 | MtrunA17_Chr3g0142211 | 91.898 | 864 | 31 | 2 | 1 | 844 | 1 | 845 | 0.0 | 1618 |
| Msa0435280 | MtrunA17_Chr8g0372371 | 31.012 | 603 | 314 | 22 | 277 | 844 | 199 | 734 | 3.47e-52 | 195 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435280 | AT3G54350.3 | 36.007 | 561 | 263 | 18 | 292 | 843 | 219 | 692 | 9.00e-78 | 266 |
| Msa0435280 | AT3G54350.3 | 32.584 | 178 | 75 | 4 | 1 | 158 | 1 | 153 | 1.41e-19 | 94.4 |
| Msa0435280 | AT3G54350.5 | 36.007 | 561 | 263 | 18 | 292 | 843 | 219 | 692 | 9.00e-78 | 266 |
| Msa0435280 | AT3G54350.5 | 32.584 | 178 | 75 | 4 | 1 | 158 | 1 | 153 | 1.41e-19 | 94.4 |
| Msa0435280 | AT3G54350.4 | 36.007 | 561 | 263 | 18 | 292 | 843 | 219 | 692 | 9.00e-78 | 266 |
| Msa0435280 | AT3G54350.4 | 32.584 | 178 | 75 | 4 | 1 | 158 | 1 | 153 | 1.41e-19 | 94.4 |
| Msa0435280 | AT3G54350.1 | 36.007 | 561 | 263 | 18 | 292 | 843 | 219 | 692 | 9.00e-78 | 266 |
| Msa0435280 | AT3G54350.1 | 32.584 | 178 | 75 | 4 | 1 | 158 | 1 | 153 | 1.41e-19 | 94.4 |
| Msa0435280 | AT3G54350.2 | 36.007 | 561 | 263 | 18 | 292 | 843 | 219 | 692 | 9.00e-78 | 266 |
| Msa0435280 | AT3G54350.2 | 32.584 | 178 | 75 | 4 | 1 | 158 | 1 | 153 | 1.41e-19 | 94.4 |
| Msa0435280 | AT1G75530.1 | 53.179 | 173 | 79 | 2 | 672 | 844 | 378 | 548 | 2.93e-48 | 181 |
| Msa0435280 | AT1G60700.1 | 38.378 | 185 | 100 | 3 | 659 | 842 | 332 | 503 | 5.06e-33 | 135 |
| Msa0435280 | AT1G60700.2 | 40.000 | 130 | 64 | 3 | 659 | 787 | 332 | 448 | 2.19e-20 | 95.9 |
Find 192 sgRNAs with CRISPR-Local
Find 392 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCAAAGTTCTTCAAAAT+TGG | 0.145974 | 3_2:+88405589 | Msa0435280:CDS |
| CTACATCCCGTTCCTGTTTC+AGG | 0.165368 | 3_2:-88407286 | None:intergenic |
| AACTCTACTTCAGCCGTTTC+AGG | 0.194230 | 3_2:-88406468 | None:intergenic |
| AAATGCACCTTCTGTGTTAA+TGG | 0.196305 | 3_2:-88409861 | None:intergenic |
| TACCATATTACAAAACTTTC+GGG | 0.200973 | 3_2:-88410015 | None:intergenic |
| AGTGGGGTCCGCAGATGTTC+TGG | 0.213381 | 3_2:+88407346 | Msa0435280:CDS |
| AATGATAATTATGTGGTAAA+TGG | 0.230760 | 3_2:+88405751 | Msa0435280:CDS |
| GCCTTTGATGCACATGTTAA+AGG | 0.239714 | 3_2:+88406588 | Msa0435280:CDS |
| CCATCATCTGGTAATGATTA+TGG | 0.261049 | 3_2:+88406888 | Msa0435280:CDS |
| TTATACCTCAATCAGATAAT+TGG | 0.264389 | 3_2:-88409486 | None:intergenic |
| GAGTTGCGCAAGTCCATTTC+CGG | 0.267079 | 3_2:-88409933 | None:intergenic |
| CCTCCTCAGGTATATTGTTT+TGG | 0.267136 | 3_2:-88405951 | None:intergenic |
| TCATCATTGGATGGAACTTC+TGG | 0.269177 | 3_2:-88406783 | None:intergenic |
| CTTCCTACAGGTACTTGATA+TGG | 0.281187 | 3_2:+88407553 | Msa0435280:intron |
| TCATTTACAATCACACTAAA+AGG | 0.285043 | 3_2:-88409827 | None:intergenic |
| AGATGATGGGACTGGTATAT+TGG | 0.285359 | 3_2:-88406874 | None:intergenic |
| TTACCATATTACAAAACTTT+CGG | 0.289996 | 3_2:-88410016 | None:intergenic |
| TTGAGTGGCGACCATATAAT+AGG | 0.290825 | 3_2:-88408468 | None:intergenic |
| GTTATCACTTCCTGACATTC+AGG | 0.301168 | 3_2:+88406206 | Msa0435280:CDS |
| ACGGGAGCCCATTGCCTTCC+AGG | 0.307560 | 3_2:+88406993 | Msa0435280:CDS |
| TTACTAAACTCTCCAATTGA+TGG | 0.323717 | 3_2:+88406429 | Msa0435280:CDS |
| TGCTTGCGAGGATGGTTATC+TGG | 0.327115 | 3_2:+88406293 | Msa0435280:CDS |
| CATTATCTTCTTCTCCTCCT+TGG | 0.339562 | 3_2:+88404093 | Msa0435280:CDS |
| ACAACTCCGTTAATTAGTTC+AGG | 0.344801 | 3_2:-88406735 | None:intergenic |
| AACTCGGAGCACAAATTTGC+AGG | 0.358484 | 3_2:-88406120 | None:intergenic |
| TGCAAGATAGTAATGAGATT+TGG | 0.360873 | 3_2:-88410058 | None:intergenic |
| GACGCCTCTTCCTCTATAAC+AGG | 0.361911 | 3_2:+88405541 | Msa0435280:CDS |
| AGTAATGAGATTTGGAATCT+TGG | 0.364145 | 3_2:-88410050 | None:intergenic |
| TTGCAGGGTCATTGTTGATT+TGG | 0.364365 | 3_2:-88406104 | None:intergenic |
| CTATGACCCTATCGTATCTA+AGG | 0.368053 | 3_2:+88405519 | Msa0435280:CDS |
| GAAGAATTATCTACTCTAAC+AGG | 0.372459 | 3_2:-88409990 | None:intergenic |
| AGCAGCTGATTCGGATGAAC+AGG | 0.372820 | 3_2:-88406844 | None:intergenic |
| AATGGAACTGCCGAGGAATT+CGG | 0.383170 | 3_2:+88406006 | Msa0435280:CDS |
| GGCTATCATAAGGCTGGAGC+AGG | 0.390120 | 3_2:+88408396 | Msa0435280:CDS |
| CATGGGTGGTGGTGGTAGGG+AGG | 0.392648 | 3_2:-88409959 | None:intergenic |
| CAATTTCCTGAACTAATTAA+CGG | 0.393033 | 3_2:+88406729 | Msa0435280:CDS |
| CGGATGAACAGGAAATTGTT+GGG | 0.395596 | 3_2:-88406833 | None:intergenic |
| AGTGAAGTTTAAGAGTGAAT+TGG | 0.399488 | 3_2:-88406325 | None:intergenic |
| TGGCCCTGCTGTTGTATTCC+CGG | 0.400806 | 3_2:+88409914 | Msa0435280:three_prime_UTR |
| GGAGCATTGGCCCTATTATA+TGG | 0.401345 | 3_2:+88408457 | Msa0435280:CDS |
| CTGAGGCCATTTCCGAGTGC+TGG | 0.404415 | 3_2:-88407236 | None:intergenic |
| TGCCTTCCAGGACCTGTTTG+TGG | 0.404574 | 3_2:+88407005 | Msa0435280:CDS |
| GATGATGGGACTGGTATATT+GGG | 0.410735 | 3_2:-88406873 | None:intergenic |
| TGCTGTTGTATTCCCGGAAA+TGG | 0.411394 | 3_2:+88409920 | Msa0435280:three_prime_UTR |
| TGGTATGAAGCGGTAGCAAC+TGG | 0.415830 | 3_2:+88409780 | Msa0435280:exon |
| TCGGATGAACAGGAAATTGT+TGG | 0.429271 | 3_2:-88406834 | None:intergenic |
| GTGGGGTCCGCAGATGTTCT+GGG | 0.429944 | 3_2:+88407347 | Msa0435280:CDS |
| TGAATTTGAGGTTCCTCCTC+AGG | 0.430219 | 3_2:-88405964 | None:intergenic |
| GCTTTCCAATTATCTGATTG+AGG | 0.431059 | 3_2:+88409481 | Msa0435280:CDS |
| ATGGATTCTGTTGGAAAAGA+TGG | 0.431255 | 3_2:+88406369 | Msa0435280:CDS |
| AATTCACTCTTAAACTTCAC+TGG | 0.433717 | 3_2:+88406327 | Msa0435280:CDS |
| CAGGTTTCTTCTCAGACAAC+GGG | 0.434080 | 3_2:+88406975 | Msa0435280:CDS |
| AAGAAACCAGCACTCGGAAA+TGG | 0.436278 | 3_2:+88407230 | Msa0435280:CDS |
| TCATATAAATCATGATCATC+AGG | 0.445771 | 3_2:-88407584 | None:intergenic |
| TAAGACCAACGTTGAGGTTG+AGG | 0.445987 | 3_2:+88404139 | Msa0435280:CDS |
| GAATGGTTCTAGCCTGAAAC+AGG | 0.446005 | 3_2:+88407274 | Msa0435280:CDS |
| TGATCTGAACAACCATCAAT+TGG | 0.446899 | 3_2:-88406441 | None:intergenic |
| ACCGGCATGTCCTGAATGTC+AGG | 0.447641 | 3_2:-88406216 | None:intergenic |
| CCATAATCATTACCAGATGA+TGG | 0.448100 | 3_2:-88406888 | None:intergenic |
| GAACATGGGTGGTGGTGGTA+GGG | 0.455970 | 3_2:-88409962 | None:intergenic |
| AACACAATGTCACAATCTAA+TGG | 0.456391 | 3_2:+88406645 | Msa0435280:CDS |
| ACATTCAGGACATGCCGGTC+TGG | 0.456435 | 3_2:+88406220 | Msa0435280:CDS |
| ATTGTTTCCACCTAGGTCAC+TGG | 0.459702 | 3_2:-88407099 | None:intergenic |
| GATTCTATTGCTTGCGAGGA+TGG | 0.460549 | 3_2:+88406285 | Msa0435280:CDS |
| TTTCATGTAGATATTGACTT+AGG | 0.461460 | 3_2:+88409040 | Msa0435280:CDS |
| GGAACATGGGTGGTGGTGGT+AGG | 0.464234 | 3_2:-88409963 | None:intergenic |
| CATCATTGGATGGAACTTCT+GGG | 0.466231 | 3_2:-88406782 | None:intergenic |
| AATCATGATCCGTCACACTA+TGG | 0.467332 | 3_2:+88405832 | Msa0435280:CDS |
| TTAATTAGTTCAGGAAATTG+AGG | 0.469269 | 3_2:-88406726 | None:intergenic |
| CTCTAACAGGCAAAGGAACA+TGG | 0.471250 | 3_2:-88409977 | None:intergenic |
| TTGAGGAAATACAAGAAAGA+TGG | 0.472514 | 3_2:+88405485 | Msa0435280:intron |
| AGTTGCGCAAGTCCATTTCC+GGG | 0.473544 | 3_2:-88409932 | None:intergenic |
| ACATTATCCTCATGAATTTG+AGG | 0.475097 | 3_2:-88405976 | None:intergenic |
| GGGTAGGAAAACATCATCAT+TGG | 0.478904 | 3_2:-88406796 | None:intergenic |
| TGAGTGGCGACCATATAATA+GGG | 0.480798 | 3_2:-88408467 | None:intergenic |
| TTGAAGAACTTTGATGGGAG+AGG | 0.480913 | 3_2:-88405583 | None:intergenic |
| AATATACCAGTCCCATCATC+TGG | 0.480957 | 3_2:+88406876 | Msa0435280:CDS |
| CAAAGGAACATGGGTGGTGG+TGG | 0.481616 | 3_2:-88409967 | None:intergenic |
| TATTGAATCGCCGAATTCCT+CGG | 0.484243 | 3_2:-88406016 | None:intergenic |
| AACTAGAAAATTGTAGTCCA+TGG | 0.490147 | 3_2:-88405719 | None:intergenic |
| AAACTAAGCGGGCTATCATA+AGG | 0.490452 | 3_2:+88408386 | Msa0435280:CDS |
| TGATTGTAAATGATTCATAA+AGG | 0.490496 | 3_2:+88409837 | Msa0435280:three_prime_UTR |
| TTCTTATATGCAGAGAGCTA+TGG | 0.490508 | 3_2:+88408426 | Msa0435280:CDS |
| AACAGGTCCTGGAAGGCAAT+GGG | 0.491562 | 3_2:-88407000 | None:intergenic |
| TGTTTCAGGCTAGAACCATT+CGG | 0.497378 | 3_2:-88407272 | None:intergenic |
| TCTGTTGGAAAAGATGGGAT+TGG | 0.498372 | 3_2:+88406375 | Msa0435280:CDS |
| CAATCTCATATCTAGACGTC+AGG | 0.498422 | 3_2:+88409078 | Msa0435280:CDS |
| TTAGAACCACAAACAGGTCC+TGG | 0.499033 | 3_2:-88407011 | None:intergenic |
| TTCTAGCCTGAAACAGGAAC+GGG | 0.499074 | 3_2:+88407280 | Msa0435280:CDS |
| AAACAGCACGCTGTTTCAAA+AGG | 0.499441 | 3_2:-88410093 | None:intergenic |
| TAATTAGTTCAGGAAATTGA+GGG | 0.501306 | 3_2:-88406725 | None:intergenic |
| CTATTTCTGATGGATTCTGT+TGG | 0.501811 | 3_2:+88406360 | Msa0435280:CDS |
| TAGAGATATGCAAACTTCCA+TGG | 0.503196 | 3_2:+88405702 | Msa0435280:CDS |
| TTGCATCATTGTTTCCACCT+AGG | 0.504103 | 3_2:-88407106 | None:intergenic |
| AGATGGTGGTTTACAGTGAA+AGG | 0.504710 | 3_2:+88407375 | Msa0435280:CDS |
| GCCTGAAAACTGTGCACTCG+AGG | 0.506036 | 3_2:+88405786 | Msa0435280:CDS |
| GAAGCTGCCATTTGTAACTC+TGG | 0.506152 | 3_2:-88406687 | None:intergenic |
| TTCAGAAAATGATAATTATG+TGG | 0.507506 | 3_2:+88405744 | Msa0435280:CDS |
| ATGCTCGAAACCTGTTATAG+AGG | 0.510920 | 3_2:-88405551 | None:intergenic |
| TCAGGTTTCTTCTCAGACAA+CGG | 0.515527 | 3_2:+88406974 | Msa0435280:CDS |
| ACCTTTAACATGTGCATCAA+AGG | 0.515942 | 3_2:-88406589 | None:intergenic |
| TGTTCTTCTGTTCTCCAGAC+CGG | 0.516912 | 3_2:-88406234 | None:intergenic |
| GGAAATGGCCTCAGAAATCA+TGG | 0.518899 | 3_2:+88407245 | Msa0435280:CDS |
| TTTACGAAGCTAACATCGAC+AGG | 0.520007 | 3_2:-88407173 | None:intergenic |
| GGTCTGGAGAACAGAAGAAC+AGG | 0.520859 | 3_2:+88406236 | Msa0435280:CDS |
| AAACAGGTCCTGGAAGGCAA+TGG | 0.521092 | 3_2:-88407001 | None:intergenic |
| TTCTCCTCCTTGGACTTCCG+AGG | 0.522656 | 3_2:+88404103 | Msa0435280:CDS |
| GAGGATAATGTGCTTCTGAA+TGG | 0.524333 | 3_2:+88405988 | Msa0435280:CDS |
| ATTTCCGGGAATACAACAGC+AGG | 0.526987 | 3_2:-88409918 | None:intergenic |
| TGAGGAAGAGCTATTTCTGA+TGG | 0.528232 | 3_2:+88406350 | Msa0435280:CDS |
| CTGACGTCTAGATATGAGAT+TGG | 0.531053 | 3_2:-88409077 | None:intergenic |
| GATTTATATGATAATGAAGA+AGG | 0.531518 | 3_2:+88407596 | Msa0435280:CDS |
| TAAGCGGGCTATCATAAGGC+TGG | 0.532916 | 3_2:+88408390 | Msa0435280:CDS |
| TATGGCTTCACATGGAGCAT+TGG | 0.533692 | 3_2:+88408444 | Msa0435280:CDS |
| CATATAATCTTCATCAAACT+CGG | 0.539231 | 3_2:-88406136 | None:intergenic |
| ATTATTGCTTCCAGTGACCT+AGG | 0.539814 | 3_2:+88407089 | Msa0435280:CDS |
| GTTTCATGTCGCACAGAAGT+AGG | 0.542854 | 3_2:+88406528 | Msa0435280:CDS |
| TGGAAGTTTGCATATCTCTA+CGG | 0.543472 | 3_2:-88405699 | None:intergenic |
| AGAAGAAACCTGAGCTCCTA+CGG | 0.544483 | 3_2:-88406964 | None:intergenic |
| TCCTGACATTCAGGACATGC+CGG | 0.548782 | 3_2:+88406215 | Msa0435280:CDS |
| TCAGTTGCAACATGCTGAAG+TGG | 0.548794 | 3_2:+88407328 | Msa0435280:CDS |
| TTGAGGGTCTTTAGCTGAAG+CGG | 0.550564 | 3_2:-88406709 | None:intergenic |
| GAAACCTGTTATAGAGGAAG+AGG | 0.551494 | 3_2:-88405545 | None:intergenic |
| CAGGATAATATTCCATGTGA+TGG | 0.557447 | 3_2:+88406255 | Msa0435280:CDS |
| GAATTCCCACACTCTAACTC+AGG | 0.557612 | 3_2:-88406168 | None:intergenic |
| ATTGGTAAATCTTATTATGA+CGG | 0.558102 | 3_2:+88406393 | Msa0435280:CDS |
| CAGTTGCAACATGCTGAAGT+GGG | 0.561922 | 3_2:+88407329 | Msa0435280:CDS |
| TGCTCTACATGCAAGTCCTA+AGG | 0.563413 | 3_2:+88407145 | Msa0435280:CDS |
| TGGATTCTGTTGGAAAAGAT+GGG | 0.564113 | 3_2:+88406370 | Msa0435280:CDS |
| TTCAGATCAGATACCTGAAA+CGG | 0.565620 | 3_2:+88406455 | Msa0435280:CDS |
| GATTCACCTGAGTTAGAGTG+TGG | 0.567474 | 3_2:+88406162 | Msa0435280:CDS |
| TCGGTTGGCCATGATTTCTG+AGG | 0.568424 | 3_2:-88407253 | None:intergenic |
| CAGAGAGCTATGGCTTCACA+TGG | 0.568900 | 3_2:+88408436 | Msa0435280:CDS |
| TGTTCTGGGGTCTGAGATGG+TGG | 0.569785 | 3_2:+88407361 | Msa0435280:CDS |
| CATAATCATTACCAGATGAT+GGG | 0.573888 | 3_2:-88406887 | None:intergenic |
| TTATCTACTCTAACAGGCAA+AGG | 0.577284 | 3_2:-88409984 | None:intergenic |
| GGAGATAGAGCTAGCAGGAG+AGG | 0.577575 | 3_2:+88406909 | Msa0435280:CDS |
| TCAGGCTAGAACCATTCGGT+TGG | 0.577846 | 3_2:-88407268 | None:intergenic |
| TCTTGATATAGTACTTTGAG+TGG | 0.578272 | 3_2:-88408483 | None:intergenic |
| AAAAGATTCTATTGCTTGCG+AGG | 0.580675 | 3_2:+88406281 | Msa0435280:CDS |
| CTTAAGCAAAAGATCATCCT+CGG | 0.581299 | 3_2:-88404120 | None:intergenic |
| CCTGAAAACTGTGCACTCGA+GGG | 0.581553 | 3_2:+88405787 | Msa0435280:CDS |
| ACAGAAGTAGGCGACAATGC+AGG | 0.582383 | 3_2:+88406540 | Msa0435280:CDS |
| AGAAATCATGGCCAACCGAA+TGG | 0.583774 | 3_2:+88407257 | Msa0435280:CDS |
| AGGCAAAGGAACATGGGTGG+TGG | 0.585700 | 3_2:-88409970 | None:intergenic |
| ACAGGTACTTGATATGGACT+TGG | 0.587590 | 3_2:+88407559 | Msa0435280:intron |
| GGATGAACAGGAAATTGTTG+GGG | 0.588114 | 3_2:-88406832 | None:intergenic |
| AGATGTTCTGGGGTCTGAGA+TGG | 0.588696 | 3_2:+88407358 | Msa0435280:CDS |
| GTAGATATTGACTTAGGCAA+AGG | 0.590406 | 3_2:+88409046 | Msa0435280:CDS |
| AGGAAAACATCATCATTGGA+TGG | 0.590849 | 3_2:-88406792 | None:intergenic |
| GCTATCATAAGGCTGGAGCA+GGG | 0.592080 | 3_2:+88408397 | Msa0435280:CDS |
| GATATTGACTTAGGCAAAGG+AGG | 0.597784 | 3_2:+88409049 | Msa0435280:CDS |
| AGATCATCCTCGGAAGTCCA+AGG | 0.600476 | 3_2:-88404110 | None:intergenic |
| TAAAGGTCCATTAACACAGA+AGG | 0.601551 | 3_2:+88409854 | Msa0435280:three_prime_UTR |
| TTAGTTGGACGATCAACAGA+AGG | 0.601805 | 3_2:+88409016 | Msa0435280:CDS |
| CCAAAACAATATACCTGAGG+AGG | 0.602011 | 3_2:+88405951 | Msa0435280:CDS |
| AGGCGTCCTTAGATACGATA+GGG | 0.606556 | 3_2:-88405525 | None:intergenic |
| TCATTACCAGATGATGGGAC+TGG | 0.607667 | 3_2:-88406882 | None:intergenic |
| ATCAACACGAAGAAACTAAG+CGG | 0.612075 | 3_2:+88408374 | Msa0435280:CDS |
| GGGGAGGCTCATTAAAGGGT+AGG | 0.614820 | 3_2:-88406812 | None:intergenic |
| TCTGGAAGACCATAGTGTGA+CGG | 0.616832 | 3_2:-88405841 | None:intergenic |
| ACTCTTAAACTTCACTGGTG+AGG | 0.618343 | 3_2:+88406332 | Msa0435280:CDS |
| TTACAATCACACTAAAAGGT+CGG | 0.621898 | 3_2:-88409823 | None:intergenic |
| ATTATGGAGATAGAGCTAGC+AGG | 0.621915 | 3_2:+88406904 | Msa0435280:CDS |
| GTTCTAGCCTGAAACAGGAA+CGG | 0.624239 | 3_2:+88407279 | Msa0435280:CDS |
| AACCACAAACAGGTCCTGGA+AGG | 0.625069 | 3_2:-88407007 | None:intergenic |
| TCTAACAGGCAAAGGAACAT+GGG | 0.625309 | 3_2:-88409976 | None:intergenic |
| TCAACACGAAGAAACTAAGC+GGG | 0.626611 | 3_2:+88408375 | Msa0435280:CDS |
| TGGGGTCCGCAGATGTTCTG+GGG | 0.628917 | 3_2:+88407348 | Msa0435280:CDS |
| GAGGCGTCCTTAGATACGAT+AGG | 0.630079 | 3_2:-88405526 | None:intergenic |
| TTTGCTTAAGACCAACGTTG+AGG | 0.631128 | 3_2:+88404133 | Msa0435280:CDS |
| TAAATCAAAGTGGTATGAAG+CGG | 0.633339 | 3_2:+88409770 | Msa0435280:CDS |
| ATTCACCTGAGTTAGAGTGT+GGG | 0.634516 | 3_2:+88406163 | Msa0435280:CDS |
| AATGTCACAATCTAATGGCG+TGG | 0.640479 | 3_2:+88406650 | Msa0435280:CDS |
| CTCAGACCCCAGAACATCTG+CGG | 0.641623 | 3_2:-88407354 | None:intergenic |
| ACTCGGAGCACAAATTTGCA+GGG | 0.643928 | 3_2:-88406119 | None:intergenic |
| TCACATAAGAAACCAGCACT+CGG | 0.662353 | 3_2:+88407224 | Msa0435280:CDS |
| ATAAACCTCAACCTCAACGT+TGG | 0.672629 | 3_2:-88404144 | None:intergenic |
| GCTTCTGAATGGAACTGCCG+AGG | 0.673898 | 3_2:+88405999 | Msa0435280:CDS |
| AGTTGCAACATGCTGAAGTG+GGG | 0.674634 | 3_2:+88407330 | Msa0435280:CDS |
| GGAGGAACCTCAAATTCATG+AGG | 0.676617 | 3_2:+88405969 | Msa0435280:CDS |
| AACAGGCAAAGGAACATGGG+TGG | 0.688974 | 3_2:-88409973 | None:intergenic |
| GTACTATATCAAGAAAACTG+AGG | 0.689460 | 3_2:+88408492 | Msa0435280:CDS |
| TTACAGTGAAAGGTTAGACG+AGG | 0.692509 | 3_2:+88407385 | Msa0435280:CDS |
| ATTGCTTCCAGTGACCTAGG+TGG | 0.693297 | 3_2:+88407092 | Msa0435280:CDS |
| TTTCCGGGAATACAACAGCA+GGG | 0.702281 | 3_2:-88409917 | None:intergenic |
| AATAGCACAGAATTGCACAC+TGG | 0.709257 | 3_2:+88409443 | Msa0435280:CDS |
| GATGAACAGGAAATTGTTGG+GGG | 0.710491 | 3_2:-88406831 | None:intergenic |
| GGACCAAAACAATATACCTG+AGG | 0.722831 | 3_2:+88405948 | Msa0435280:CDS |
| TCTGTGCGACATGAAACAGA+CGG | 0.723189 | 3_2:-88406522 | None:intergenic |
| ATATTCGAGATAAATCAAAG+TGG | 0.731343 | 3_2:+88409760 | Msa0435280:CDS |
| TCATCCTCGGAAGTCCAAGG+AGG | 0.742827 | 3_2:-88404107 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATAAAATTTAATATT+TGG | + | chr3_2:88405311-88405330 | Msa0435280:intron | 0.0% |
| !! | ATATTTGCATATTAAAAAAA+TGG | - | chr3_2:88404917-88404936 | None:intergenic | 10.0% |
| !! | AATATTCAAAAAGTAAAAAT+CGG | - | chr3_2:88408578-88408597 | None:intergenic | 10.0% |
| !!! | TTTTTGTTTTAAATTTTGAA+AGG | + | chr3_2:88408884-88408903 | Msa0435280:intron | 10.0% |
| !!! | TTTTGTTTTAAATTTTGAAA+GGG | + | chr3_2:88408885-88408904 | Msa0435280:intron | 10.0% |
| !! | TAAAATGAAATGAATGAAAT+TGG | - | chr3_2:88404220-88404239 | None:intergenic | 15.0% |
| !! | AAAATGAATAAGTAAATTAG+TGG | - | chr3_2:88404252-88404271 | None:intergenic | 15.0% |
| !! | CTAGATATAGAAAAATTTAT+TGG | + | chr3_2:88406042-88406061 | Msa0435280:CDS | 15.0% |
| !! | ATAAATATAAACGTACTATA+AGG | + | chr3_2:88407905-88407924 | Msa0435280:intron | 15.0% |
| !! | TATATTTATAATTGCAAAAC+AGG | - | chr3_2:88408816-88408835 | None:intergenic | 15.0% |
| !!! | ATGCAGTTTTTTTTTTTTTT+TGG | + | chr3_2:88409136-88409155 | Msa0435280:intron | 15.0% |
| !! | AAATGAATGAAATTGGAAAA+AGG | - | chr3_2:88404213-88404232 | None:intergenic | 20.0% |
| !! | GATAGTATTAAACAATGAAA+TGG | - | chr3_2:88404396-88404415 | None:intergenic | 20.0% |
| !! | AACTCTAAATTGAATTCAAT+AGG | + | chr3_2:88404630-88404649 | Msa0435280:intron | 20.0% |
| !! | TTCAGAAAATGATAATTATG+TGG | + | chr3_2:88405744-88405763 | Msa0435280:CDS | 20.0% |
| !! | AATGATAATTATGTGGTAAA+TGG | + | chr3_2:88405751-88405770 | Msa0435280:CDS | 20.0% |
| !!! | AATTTTATGGATGTTGATAT+TGG | + | chr3_2:88405865-88405884 | Msa0435280:CDS | 20.0% |
| !! | ATTGGTAAATCTTATTATGA+CGG | + | chr3_2:88406393-88406412 | Msa0435280:CDS | 20.0% |
| !!! | GATTTATATGATAATGAAGA+AGG | + | chr3_2:88407596-88407615 | Msa0435280:CDS | 20.0% |
| !!! | CCAAATTTTTTAGCAAAATA+AGG | - | chr3_2:88407866-88407885 | None:intergenic | 20.0% |
| !!! | CCTTATTTTGCTAAAAAATT+TGG | + | chr3_2:88407863-88407882 | Msa0435280:intron | 20.0% |
| !! | CAAAAGAAACTAAATTATGT+TGG | - | chr3_2:88408278-88408297 | None:intergenic | 20.0% |
| !!! | ATTTAGTTTCTTTTGTGATT+CGG | + | chr3_2:88408283-88408302 | Msa0435280:intron | 20.0% |
| !! | AGATTATTAGTACACATATA+TGG | + | chr3_2:88408697-88408716 | Msa0435280:intron | 20.0% |
| !!! | ATATCTACTCATTTAAAATC+TGG | + | chr3_2:88409168-88409187 | Msa0435280:intron | 20.0% |
| !! | TATTGAGGTCAATTTATATT+TGG | - | chr3_2:88409322-88409341 | None:intergenic | 20.0% |
| !! | ATAAAAACGGAAAGTTTAAT+TGG | - | chr3_2:88409347-88409366 | None:intergenic | 20.0% |
| !! | ATCATAAAAATGGATAAAGA+TGG | + | chr3_2:88409377-88409396 | Msa0435280:CDS | 20.0% |
| !! | TCATTCTACATTAAAAACAT+TGG | + | chr3_2:88409401-88409420 | Msa0435280:CDS | 20.0% |
| !! | TTCCTGATAAAATAAAACAA+TGG | + | chr3_2:88409584-88409603 | Msa0435280:intron | 20.0% |
| !! | TGATTGTAAATGATTCATAA+AGG | + | chr3_2:88409837-88409856 | Msa0435280:three_prime_UTR | 20.0% |
| !! | TTACCATATTACAAAACTTT+CGG | - | chr3_2:88410019-88410038 | None:intergenic | 20.0% |
| ! | ATGAATAAGTAAATTAGTGG+AGG | - | chr3_2:88404249-88404268 | None:intergenic | 25.0% |
| !! | TTTTTAATACCATCGTCTAT+CGG | + | chr3_2:88404495-88404514 | Msa0435280:intron | 25.0% |
| !! | TTTTAACACATTGTAGTCTA+AGG | + | chr3_2:88404546-88404565 | Msa0435280:intron | 25.0% |
| !!! | TTTTTGAAATTTTCCCGTAT+CGG | - | chr3_2:88404825-88404844 | None:intergenic | 25.0% |
| ! | TCAAAAATCAAGATACGATA+CGG | + | chr3_2:88404838-88404857 | Msa0435280:intron | 25.0% |
| ! | TTTAATATTTGGATACTCTC+CGG | + | chr3_2:88405322-88405341 | Msa0435280:intron | 25.0% |
| !!! | TTCACGAAAATATAGTTTTG+AGG | + | chr3_2:88405468-88405487 | Msa0435280:intron | 25.0% |
| !!! | CAATTTTGAAGAACTTTGAT+GGG | - | chr3_2:88405591-88405610 | None:intergenic | 25.0% |
| !! | TCAACATCCATAAAATTTTC+TGG | - | chr3_2:88405862-88405881 | None:intergenic | 25.0% |
| ! | CATATAATCTTCATCAAACT+CGG | - | chr3_2:88406139-88406158 | None:intergenic | 25.0% |
| ! | TAATTAGTTCAGGAAATTGA+GGG | - | chr3_2:88406728-88406747 | None:intergenic | 25.0% |
| ! | TTAATTAGTTCAGGAAATTG+AGG | - | chr3_2:88406729-88406748 | None:intergenic | 25.0% |
| ! | CAATTTCCTGAACTAATTAA+CGG | + | chr3_2:88406729-88406748 | Msa0435280:CDS | 25.0% |
| !!! | TTTATTTTAGAACCACAAAC+AGG | - | chr3_2:88407020-88407039 | None:intergenic | 25.0% |
| ! | AATAAGTCAGAAAATTGCAA+AGG | - | chr3_2:88407525-88407544 | None:intergenic | 25.0% |
| ! | TCATATAAATCATGATCATC+AGG | - | chr3_2:88407587-88407606 | None:intergenic | 25.0% |
| !!! | AAGAAGGTATTACTATTATG+TGG | + | chr3_2:88407612-88407631 | Msa0435280:intron | 25.0% |
| ! | AATAGAAATGATCTTCAGTT+AGG | - | chr3_2:88407755-88407774 | None:intergenic | 25.0% |
| ! | AATATAAACGTACTATAAGG+AGG | + | chr3_2:88407908-88407927 | Msa0435280:intron | 25.0% |
| ! | ATATAAACGTACTATAAGGA+GGG | + | chr3_2:88407909-88407928 | Msa0435280:intron | 25.0% |
| ! | TACTTTAATACTCTTTCAGT+TGG | + | chr3_2:88407968-88407987 | Msa0435280:intron | 25.0% |
| ! | AAATATGATAAAACAGAGTC+TGG | - | chr3_2:88408107-88408126 | None:intergenic | 25.0% |
| ! | TTATCACAAAAAATAACGTG+AGG | - | chr3_2:88408614-88408633 | None:intergenic | 25.0% |
| !! | AGTGACCTTTTTGTATATTT+TGG | + | chr3_2:88408754-88408773 | Msa0435280:intron | 25.0% |
| ! | TCAGTCCAAAATATACAAAA+AGG | - | chr3_2:88408762-88408781 | None:intergenic | 25.0% |
| !!! | ACAAAATGTGCATTTTAGTT+CGG | - | chr3_2:88408859-88408878 | None:intergenic | 25.0% |
| !!! | TTTCATGTAGATATTGACTT+AGG | + | chr3_2:88409040-88409059 | Msa0435280:CDS | 25.0% |
| !! | ATTAGTTTATAGTTACACTG+TGG | + | chr3_2:88409215-88409234 | Msa0435280:intron | 25.0% |
| !!! | GCTTTAAGAAATTACTTCAA+TGG | + | chr3_2:88409261-88409280 | Msa0435280:intron | 25.0% |
| ! | TTACTTCAATGGTAAATAGT+TGG | + | chr3_2:88409272-88409291 | Msa0435280:intron | 25.0% |
| ! | TACTTCAATGGTAAATAGTT+GGG | + | chr3_2:88409273-88409292 | Msa0435280:intron | 25.0% |
| ! | AAAGTTTAATTGGCATATTG+AGG | - | chr3_2:88409337-88409356 | None:intergenic | 25.0% |
| ! | TTATACCTCAATCAGATAAT+TGG | - | chr3_2:88409489-88409508 | None:intergenic | 25.0% |
| !!! | CACCATTGTTTTATTTTATC+AGG | - | chr3_2:88409589-88409608 | None:intergenic | 25.0% |
| ! | TAAAATAAAACAATGGTGAC+TGG | + | chr3_2:88409591-88409610 | Msa0435280:intron | 25.0% |
| ! | TTTATTTATTTGAGAGTTGC+AGG | - | chr3_2:88409707-88409726 | None:intergenic | 25.0% |
| ! | GCAACTCTCAAATAAATAAA+TGG | + | chr3_2:88409707-88409726 | Msa0435280:intron | 25.0% |
| ! | ATATTCGAGATAAATCAAAG+TGG | + | chr3_2:88409760-88409779 | Msa0435280:CDS | 25.0% |
| ! | TCATTTACAATCACACTAAA+AGG | - | chr3_2:88409830-88409849 | None:intergenic | 25.0% |
| ! | TACCATATTACAAAACTTTC+GGG | - | chr3_2:88410018-88410037 | None:intergenic | 25.0% |
| TCGAAAATGAAAGAGAGAAA+GGG | - | chr3_2:88404170-88404189 | None:intergenic | 30.0% | |
| ATCGAAAATGAAAGAGAGAA+AGG | - | chr3_2:88404171-88404190 | None:intergenic | 30.0% | |
| TAGAAAAACAATGTTAGAGG+TGG | - | chr3_2:88404308-88404327 | None:intergenic | 30.0% | |
| !! | ACCTCTAACATTGTTTTTCT+AGG | + | chr3_2:88404307-88404326 | Msa0435280:intron | 30.0% |
| ACCTAGAAAAACAATGTTAG+AGG | - | chr3_2:88404311-88404330 | None:intergenic | 30.0% | |
| TTTAATACTATCGTTGATCG+CGG | + | chr3_2:88404404-88404423 | Msa0435280:intron | 30.0% | |
| !!! | TAGTCTAAGGTTGTTTTTCT+AGG | + | chr3_2:88404559-88404578 | Msa0435280:intron | 30.0% |
| TATGTGTTTCAATTTCGTTG+TGG | + | chr3_2:88404586-88404605 | Msa0435280:intron | 30.0% | |
| !!! | AGGTCTATGTGTATTTTTTC+TGG | + | chr3_2:88404650-88404669 | Msa0435280:intron | 30.0% |
| TTTAAACCAGAATCCTGAAA+TGG | - | chr3_2:88404703-88404722 | None:intergenic | 30.0% | |
| ! | CAAGCTTTATATTTGCAGAA+TGG | + | chr3_2:88404733-88404752 | Msa0435280:intron | 30.0% |
| ATTAACAAACACAAGAAACC+AGG | + | chr3_2:88404937-88404956 | Msa0435280:intron | 30.0% | |
| AATATTGACGATTAAGAGAG+TGG | + | chr3_2:88404988-88405007 | Msa0435280:intron | 30.0% | |
| AATGCTACACTATATCCAAA+AGG | + | chr3_2:88405070-88405089 | Msa0435280:intron | 30.0% | |
| !!! | TGGATATAGTGCTTCTTTTT+TGG | - | chr3_2:88405124-88405143 | None:intergenic | 30.0% |
| !!! | AGTACTGATGTGTTCTTTTT+TGG | - | chr3_2:88405144-88405163 | None:intergenic | 30.0% |
| TTGAGGAAATACAAGAAAGA+TGG | + | chr3_2:88405485-88405504 | Msa0435280:intron | 30.0% | |
| !! | CCAATTTTGAAGAACTTTGA+TGG | - | chr3_2:88405592-88405611 | None:intergenic | 30.0% |
| CCATCAAAGTTCTTCAAAAT+TGG | + | chr3_2:88405589-88405608 | Msa0435280:CDS | 30.0% | |
| AACTAGAAAATTGTAGTCCA+TGG | - | chr3_2:88405722-88405741 | None:intergenic | 30.0% | |
| ! | TGGTCTTCCAGAAAATTTTA+TGG | + | chr3_2:88405852-88405871 | Msa0435280:CDS | 30.0% |
| ACATTATCCTCATGAATTTG+AGG | - | chr3_2:88405979-88405998 | None:intergenic | 30.0% | |
| AGTGAAGTTTAAGAGTGAAT+TGG | - | chr3_2:88406328-88406347 | None:intergenic | 30.0% | |
| AATTCACTCTTAAACTTCAC+TGG | + | chr3_2:88406327-88406346 | Msa0435280:CDS | 30.0% | |
| TTACTAAACTCTCCAATTGA+TGG | + | chr3_2:88406429-88406448 | Msa0435280:CDS | 30.0% | |
| AACACAATGTCACAATCTAA+TGG | + | chr3_2:88406645-88406664 | Msa0435280:CDS | 30.0% | |
| TCAAAAACCAGAGTTACAAA+TGG | + | chr3_2:88406680-88406699 | Msa0435280:CDS | 30.0% | |
| CATAATCATTACCAGATGAT+GGG | - | chr3_2:88406890-88406909 | None:intergenic | 30.0% | |
| !! | TGCAACTGATTATTTTCAAG+TGG | - | chr3_2:88407317-88407336 | None:intergenic | 30.0% |
| GCTTCTACATCAGAAAAATA+AGG | - | chr3_2:88407443-88407462 | None:intergenic | 30.0% | |
| TATAAACGTACTATAAGGAG+GGG | + | chr3_2:88407910-88407929 | Msa0435280:intron | 30.0% | |
| !!! | CGAATTTTTTGAATTCCAAG+AGG | + | chr3_2:88407939-88407958 | Msa0435280:intron | 30.0% |
| ! | AGATTCAACTTTTGGATTTG+TGG | + | chr3_2:88408056-88408075 | Msa0435280:intron | 30.0% |
| TGTTTCAGAATTAACTAGCA+GGG | - | chr3_2:88408138-88408157 | None:intergenic | 30.0% | |
| ATGTTTCAGAATTAACTAGC+AGG | - | chr3_2:88408139-88408158 | None:intergenic | 30.0% | |
| AAGCAAAAACATTCACACAA+AGG | - | chr3_2:88408198-88408217 | None:intergenic | 30.0% | |
| TCTTGATATAGTACTTTGAG+TGG | - | chr3_2:88408486-88408505 | None:intergenic | 30.0% | |
| GTACTATATCAAGAAAACTG+AGG | + | chr3_2:88408492-88408511 | Msa0435280:CDS | 30.0% | |
| ! | ACAGGTATTTTCAACTACAT+TGG | - | chr3_2:88408798-88408817 | None:intergenic | 30.0% |
| !!! | CAAAATGTGCATTTTAGTTC+GGG | - | chr3_2:88408858-88408877 | None:intergenic | 30.0% |
| TGCAAATCAAATCTAACTAG+TGG | + | chr3_2:88408955-88408974 | Msa0435280:intron | 30.0% | |
| GCAAATCAAATCTAACTAGT+GGG | + | chr3_2:88408956-88408975 | Msa0435280:intron | 30.0% | |
| TTTGAACCATCATAAAAGCA+TGG | - | chr3_2:88408982-88409001 | None:intergenic | 30.0% | |
| TGAGGTCAATTTATATTTGG+TGG | - | chr3_2:88409319-88409338 | None:intergenic | 30.0% | |
| !! | ACTTTCCGTTTTTATGTTTC+AGG | + | chr3_2:88409352-88409371 | Msa0435280:intron | 30.0% |
| GATTGCCTGAAACATAAAAA+CGG | - | chr3_2:88409360-88409379 | None:intergenic | 30.0% | |
| GTTTCAGGCAATCATAAAAA+TGG | + | chr3_2:88409367-88409386 | Msa0435280:intron | 30.0% | |
| TCTACATTAAAAACATTGGC+AGG | + | chr3_2:88409405-88409424 | Msa0435280:CDS | 30.0% | |
| GGTAATCAATCAGATTTAGA+AGG | - | chr3_2:88409522-88409541 | None:intergenic | 30.0% | |
| TAAATCTGATTGATTACCAC+TGG | + | chr3_2:88409524-88409543 | Msa0435280:intron | 30.0% | |
| !!! | ATGGTTTATTTTGCAGTTGA+AGG | + | chr3_2:88409726-88409745 | Msa0435280:intron | 30.0% |
| !!! | TGGTTTATTTTGCAGTTGAA+GGG | + | chr3_2:88409727-88409746 | Msa0435280:intron | 30.0% |
| TAAATCAAAGTGGTATGAAG+CGG | + | chr3_2:88409770-88409789 | Msa0435280:CDS | 30.0% | |
| TTACAATCACACTAAAAGGT+CGG | - | chr3_2:88409826-88409845 | None:intergenic | 30.0% | |
| GAAGAATTATCTACTCTAAC+AGG | - | chr3_2:88409993-88410012 | None:intergenic | 30.0% | |
| !! | AACCCGAAAGTTTTGTAATA+TGG | + | chr3_2:88410013-88410032 | Msa0435280:three_prime_UTR | 30.0% |
| ! | AGTAATGAGATTTGGAATCT+TGG | - | chr3_2:88410053-88410072 | None:intergenic | 30.0% |
| TGCAAGATAGTAATGAGATT+TGG | - | chr3_2:88410061-88410080 | None:intergenic | 30.0% | |
| CTTAAGCAAAAGATCATCCT+CGG | - | chr3_2:88404123-88404142 | None:intergenic | 35.0% | |
| ! | TAGAGTTCATGTTGTTTGTC+CGG | - | chr3_2:88404617-88404636 | None:intergenic | 35.0% |
| ! | AGCACTAACAATGTTCCTTT+TGG | - | chr3_2:88405088-88405107 | None:intergenic | 35.0% |
| !!! | CGTCATCCATTTTGAAGTAT+CGG | + | chr3_2:88405402-88405421 | Msa0435280:intron | 35.0% |
| !!! | GTCATCCATTTTGAAGTATC+GGG | + | chr3_2:88405403-88405422 | Msa0435280:intron | 35.0% |
| !!! | TCATCCATTTTGAAGTATCG+GGG | + | chr3_2:88405404-88405423 | Msa0435280:intron | 35.0% |
| TGGAAGTTTGCATATCTCTA+CGG | - | chr3_2:88405702-88405721 | None:intergenic | 35.0% | |
| TAGAGATATGCAAACTTCCA+TGG | + | chr3_2:88405702-88405721 | Msa0435280:CDS | 35.0% | |
| ! | ACTTGAAGAGAATTTTCCCA+TGG | + | chr3_2:88405927-88405946 | Msa0435280:CDS | 35.0% |
| !!! | GGTATATTGTTTTGGTCCAT+GGG | - | chr3_2:88405946-88405965 | None:intergenic | 35.0% |
| !!! | AGGTATATTGTTTTGGTCCA+TGG | - | chr3_2:88405947-88405966 | None:intergenic | 35.0% |
| CAGGATAATATTCCATGTGA+TGG | + | chr3_2:88406255-88406274 | Msa0435280:CDS | 35.0% | |
| ! | GAATCTTTTGAACCATCACA+TGG | - | chr3_2:88406270-88406289 | None:intergenic | 35.0% |
| AAAAGATTCTATTGCTTGCG+AGG | + | chr3_2:88406281-88406300 | Msa0435280:CDS | 35.0% | |
| !! | CTATTTCTGATGGATTCTGT+TGG | + | chr3_2:88406360-88406379 | Msa0435280:CDS | 35.0% |
| ATGGATTCTGTTGGAAAAGA+TGG | + | chr3_2:88406369-88406388 | Msa0435280:CDS | 35.0% | |
| TGGATTCTGTTGGAAAAGAT+GGG | + | chr3_2:88406370-88406389 | Msa0435280:CDS | 35.0% | |
| TGATCTGAACAACCATCAAT+TGG | - | chr3_2:88406444-88406463 | None:intergenic | 35.0% | |
| TTCAGATCAGATACCTGAAA+CGG | + | chr3_2:88406455-88406474 | Msa0435280:CDS | 35.0% | |
| ! | ATTTTTAACATCTTCGCGTG+GGG | - | chr3_2:88406502-88406521 | None:intergenic | 35.0% |
| ! | GATTTTTAACATCTTCGCGT+GGG | - | chr3_2:88406503-88406522 | None:intergenic | 35.0% |
| ACCTTTAACATGTGCATCAA+AGG | - | chr3_2:88406592-88406611 | None:intergenic | 35.0% | |
| ACAACTCCGTTAATTAGTTC+AGG | - | chr3_2:88406738-88406757 | None:intergenic | 35.0% | |
| AGGAAAACATCATCATTGGA+TGG | - | chr3_2:88406795-88406814 | None:intergenic | 35.0% | |
| CCATAATCATTACCAGATGA+TGG | - | chr3_2:88406891-88406910 | None:intergenic | 35.0% | |
| ! | CCATCATCTGGTAATGATTA+TGG | + | chr3_2:88406888-88406907 | Msa0435280:CDS | 35.0% |
| ! | TTTTTCTGATGTAGAAGCCA+TGG | + | chr3_2:88407445-88407464 | Msa0435280:CDS | 35.0% |
| TATTCATGATTCCTTCCTAC+AGG | + | chr3_2:88407541-88407560 | Msa0435280:intron | 35.0% | |
| ! | TGCATTTTTATGCTACCTCA+TGG | + | chr3_2:88407781-88407800 | Msa0435280:intron | 35.0% |
| ! | TTTTATGCTACCTCATGGTA+TGG | + | chr3_2:88407786-88407805 | Msa0435280:intron | 35.0% |
| TTTATGCTACCTCATGGTAT+GGG | + | chr3_2:88407787-88407806 | Msa0435280:intron | 35.0% | |
| ATAAACGTACTATAAGGAGG+GGG | + | chr3_2:88407911-88407930 | Msa0435280:intron | 35.0% | |
| ATTAAAGTAGTGCAACCTCT+TGG | - | chr3_2:88407957-88407976 | None:intergenic | 35.0% | |
| AACATGCTATGTTGTTGTCA+TGG | + | chr3_2:88408031-88408050 | Msa0435280:intron | 35.0% | |
| ! | TCATGGCTAGATTCAACTTT+TGG | + | chr3_2:88408048-88408067 | Msa0435280:intron | 35.0% |
| ! | TTCAACTTTTGGATTTGTGG+TGG | + | chr3_2:88408059-88408078 | Msa0435280:intron | 35.0% |
| ATCAACACGAAGAAACTAAG+CGG | + | chr3_2:88408374-88408393 | Msa0435280:CDS | 35.0% | |
| TTCTTATATGCAGAGAGCTA+TGG | + | chr3_2:88408426-88408445 | Msa0435280:CDS | 35.0% | |
| ! | CAGATTGTGTTTCTAACATG+AGG | + | chr3_2:88408730-88408749 | Msa0435280:intron | 35.0% |
| !! | GTAGATATTGACTTAGGCAA+AGG | + | chr3_2:88409046-88409065 | Msa0435280:CDS | 35.0% |
| AAACTGCATTAAGTCAGAGT+TGG | - | chr3_2:88409125-88409144 | None:intergenic | 35.0% | |
| GCTTTCCAATTATCTGATTG+AGG | + | chr3_2:88409481-88409500 | Msa0435280:CDS | 35.0% | |
| AAAATGCAGAATTCTTCGAG+TGG | + | chr3_2:88409630-88409649 | Msa0435280:intron | 35.0% | |
| TAAAGGTCCATTAACACAGA+AGG | + | chr3_2:88409854-88409873 | Msa0435280:three_prime_UTR | 35.0% | |
| AAATGCACCTTCTGTGTTAA+TGG | - | chr3_2:88409864-88409883 | None:intergenic | 35.0% | |
| TTATCTACTCTAACAGGCAA+AGG | - | chr3_2:88409987-88410006 | None:intergenic | 35.0% | |
| CATTATCTTCTTCTCCTCCT+TGG | + | chr3_2:88404093-88404112 | Msa0435280:CDS | 40.0% | |
| TTTGCTTAAGACCAACGTTG+AGG | + | chr3_2:88404133-88404152 | Msa0435280:CDS | 40.0% | |
| ATAAACCTCAACCTCAACGT+TGG | - | chr3_2:88404147-88404166 | None:intergenic | 40.0% | |
| AGAGGTGGATAATAGAGCAA+TGG | - | chr3_2:88404293-88404312 | None:intergenic | 40.0% | |
| ACAAGTTAACCGATAGACGA+TGG | - | chr3_2:88404507-88404526 | None:intergenic | 40.0% | |
| CAATTTCGTTGTGGAATGTC+CGG | + | chr3_2:88404595-88404614 | Msa0435280:intron | 40.0% | |
| AGAGACAAGACAACCATTTC+AGG | + | chr3_2:88404687-88404706 | Msa0435280:intron | 40.0% | |
| AGACAACCATTTCAGGATTC+TGG | + | chr3_2:88404694-88404713 | Msa0435280:intron | 40.0% | |
| AAATCAAGATACGATACGGC+TGG | + | chr3_2:88404842-88404861 | Msa0435280:intron | 40.0% | |
| AATCAAGATACGATACGGCT+GGG | + | chr3_2:88404843-88404862 | Msa0435280:intron | 40.0% | |
| ! | GCATTGATGTATAGCACTGA+TGG | - | chr3_2:88405055-88405074 | None:intergenic | 40.0% |
| ACACAAGTATCCGTGAGTAT+CGG | + | chr3_2:88405254-88405273 | Msa0435280:intron | 40.0% | |
| GATACTTCTCGATACGTATC+CGG | - | chr3_2:88405344-88405363 | None:intergenic | 40.0% | |
| ! | GGATACGTATCGAGAAGTAT+CGG | + | chr3_2:88405343-88405362 | Msa0435280:intron | 40.0% |
| !! | GATACGTATCGAGAAGTATC+GGG | + | chr3_2:88405344-88405363 | Msa0435280:intron | 40.0% |
| AGCTTGGAAGCAATTGCAAA+AGG | + | chr3_2:88405433-88405452 | Msa0435280:intron | 40.0% | |
| CTATGACCCTATCGTATCTA+AGG | + | chr3_2:88405519-88405538 | Msa0435280:CDS | 40.0% | |
| GAAACCTGTTATAGAGGAAG+AGG | - | chr3_2:88405548-88405567 | None:intergenic | 40.0% | |
| ATGCTCGAAACCTGTTATAG+AGG | - | chr3_2:88405554-88405573 | None:intergenic | 40.0% | |
| TTGAAGAACTTTGATGGGAG+AGG | - | chr3_2:88405586-88405605 | None:intergenic | 40.0% | |
| AATCATGATCCGTCACACTA+TGG | + | chr3_2:88405832-88405851 | Msa0435280:CDS | 40.0% | |
| GGACCAAAACAATATACCTG+AGG | + | chr3_2:88405948-88405967 | Msa0435280:CDS | 40.0% | |
| ! | CCTCCTCAGGTATATTGTTT+TGG | - | chr3_2:88405954-88405973 | None:intergenic | 40.0% |
| CCAAAACAATATACCTGAGG+AGG | + | chr3_2:88405951-88405970 | Msa0435280:CDS | 40.0% | |
| GAGGATAATGTGCTTCTGAA+TGG | + | chr3_2:88405988-88406007 | Msa0435280:CDS | 40.0% | |
| TATTGAATCGCCGAATTCCT+CGG | - | chr3_2:88406019-88406038 | None:intergenic | 40.0% | |
| ! | TTGCAGGGTCATTGTTGATT+TGG | - | chr3_2:88406107-88406126 | None:intergenic | 40.0% |
| ATTCACCTGAGTTAGAGTGT+GGG | + | chr3_2:88406163-88406182 | Msa0435280:CDS | 40.0% | |
| GTTATCACTTCCTGACATTC+AGG | + | chr3_2:88406206-88406225 | Msa0435280:CDS | 40.0% | |
| ACTCTTAAACTTCACTGGTG+AGG | + | chr3_2:88406332-88406351 | Msa0435280:CDS | 40.0% | |
| !! | TGAGGAAGAGCTATTTCTGA+TGG | + | chr3_2:88406350-88406369 | Msa0435280:CDS | 40.0% |
| TCTGTTGGAAAAGATGGGAT+TGG | + | chr3_2:88406375-88406394 | Msa0435280:CDS | 40.0% | |
| ! | GGATTTTTAACATCTTCGCG+TGG | - | chr3_2:88406504-88406523 | None:intergenic | 40.0% |
| GCCTTTGATGCACATGTTAA+AGG | + | chr3_2:88406588-88406607 | Msa0435280:CDS | 40.0% | |
| AATGTCACAATCTAATGGCG+TGG | + | chr3_2:88406650-88406669 | Msa0435280:CDS | 40.0% | |
| CATCATTGGATGGAACTTCT+GGG | - | chr3_2:88406785-88406804 | None:intergenic | 40.0% | |
| TCATCATTGGATGGAACTTC+TGG | - | chr3_2:88406786-88406805 | None:intergenic | 40.0% | |
| GGGTAGGAAAACATCATCAT+TGG | - | chr3_2:88406799-88406818 | None:intergenic | 40.0% | |
| GATGAACAGGAAATTGTTGG+GGG | - | chr3_2:88406834-88406853 | None:intergenic | 40.0% | |
| GGATGAACAGGAAATTGTTG+GGG | - | chr3_2:88406835-88406854 | None:intergenic | 40.0% | |
| CGGATGAACAGGAAATTGTT+GGG | - | chr3_2:88406836-88406855 | None:intergenic | 40.0% | |
| TCGGATGAACAGGAAATTGT+TGG | - | chr3_2:88406837-88406856 | None:intergenic | 40.0% | |
| !!! | GGGTTTTTTAGCAGCTGATT+CGG | - | chr3_2:88406856-88406875 | None:intergenic | 40.0% |
| !! | GATGATGGGACTGGTATATT+GGG | - | chr3_2:88406876-88406895 | None:intergenic | 40.0% |
| !! | AGATGATGGGACTGGTATAT+TGG | - | chr3_2:88406877-88406896 | None:intergenic | 40.0% |
| AATATACCAGTCCCATCATC+TGG | + | chr3_2:88406876-88406895 | Msa0435280:CDS | 40.0% | |
| ATTATGGAGATAGAGCTAGC+AGG | + | chr3_2:88406904-88406923 | Msa0435280:CDS | 40.0% | |
| !! | GAGAGGTAAAGTTTTGATGC+AGG | + | chr3_2:88406926-88406945 | Msa0435280:CDS | 40.0% |
| GTTGAACAAAAAAGCTCCGT+AGG | + | chr3_2:88406948-88406967 | Msa0435280:CDS | 40.0% | |
| TCAGGTTTCTTCTCAGACAA+CGG | + | chr3_2:88406974-88406993 | Msa0435280:CDS | 40.0% | |
| ATTATTGCTTCCAGTGACCT+AGG | + | chr3_2:88407089-88407108 | Msa0435280:CDS | 40.0% | |
| TTGCATCATTGTTTCCACCT+AGG | - | chr3_2:88407109-88407128 | None:intergenic | 40.0% | |
| ! | ACATCGACAGGTTTTTCCTT+AGG | - | chr3_2:88407164-88407183 | None:intergenic | 40.0% |
| TTTACGAAGCTAACATCGAC+AGG | - | chr3_2:88407176-88407195 | None:intergenic | 40.0% | |
| TCACATAAGAAACCAGCACT+CGG | + | chr3_2:88407224-88407243 | Msa0435280:CDS | 40.0% | |
| TGTTTCAGGCTAGAACCATT+CGG | - | chr3_2:88407275-88407294 | None:intergenic | 40.0% | |
| ! | AGATGGTGGTTTACAGTGAA+AGG | + | chr3_2:88407375-88407394 | Msa0435280:CDS | 40.0% |
| TTACAGTGAAAGGTTAGACG+AGG | + | chr3_2:88407385-88407404 | Msa0435280:CDS | 40.0% | |
| CATATCAAGTACCTGTAGGA+AGG | - | chr3_2:88407555-88407574 | None:intergenic | 40.0% | |
| CTTCCTACAGGTACTTGATA+TGG | + | chr3_2:88407553-88407572 | Msa0435280:intron | 40.0% | |
| AGTCCATATCAAGTACCTGT+AGG | - | chr3_2:88407559-88407578 | None:intergenic | 40.0% | |
| ACAGGTACTTGATATGGACT+TGG | + | chr3_2:88407559-88407578 | Msa0435280:intron | 40.0% | |
| GGTATTACTATTATGTGGCC+AGG | + | chr3_2:88407617-88407636 | Msa0435280:intron | 40.0% | |
| ! | TATGTGGCCAGGAATTTTAG+TGG | + | chr3_2:88407628-88407647 | Msa0435280:intron | 40.0% |
| TCAACCACCACTAAAATTCC+TGG | - | chr3_2:88407638-88407657 | None:intergenic | 40.0% | |
| ACTTCACCTATTTGAGCAGT+TGG | + | chr3_2:88407815-88407834 | Msa0435280:intron | 40.0% | |
| AGACTACCAACTGCTCAAAT+AGG | - | chr3_2:88407824-88407843 | None:intergenic | 40.0% | |
| TAAACGTACTATAAGGAGGG+GGG | + | chr3_2:88407912-88407931 | Msa0435280:intron | 40.0% | |
| TCAACACGAAGAAACTAAGC+GGG | + | chr3_2:88408375-88408394 | Msa0435280:CDS | 40.0% | |
| !! | AAACTAAGCGGGCTATCATA+AGG | + | chr3_2:88408386-88408405 | Msa0435280:CDS | 40.0% |
| TGAGTGGCGACCATATAATA+GGG | - | chr3_2:88408470-88408489 | None:intergenic | 40.0% | |
| TTGAGTGGCGACCATATAAT+AGG | - | chr3_2:88408471-88408490 | None:intergenic | 40.0% | |
| TTCCTTGATCTTCACGTTGT+TGG | + | chr3_2:88408542-88408561 | Msa0435280:intron | 40.0% | |
| TCCTTGATCTTCACGTTGTT+GGG | + | chr3_2:88408543-88408562 | Msa0435280:intron | 40.0% | |
| !! | ATCATCCTGCAGGTTTTAGT+TGG | + | chr3_2:88409001-88409020 | Msa0435280:intron | 40.0% |
| TTAGTTGGACGATCAACAGA+AGG | + | chr3_2:88409016-88409035 | Msa0435280:CDS | 40.0% | |
| !! | GATATTGACTTAGGCAAAGG+AGG | + | chr3_2:88409049-88409068 | Msa0435280:CDS | 40.0% |
| CTGACGTCTAGATATGAGAT+TGG | - | chr3_2:88409080-88409099 | None:intergenic | 40.0% | |
| CAATCTCATATCTAGACGTC+AGG | + | chr3_2:88409078-88409097 | Msa0435280:CDS | 40.0% | |
| AATAGCACAGAATTGCACAC+TGG | + | chr3_2:88409443-88409462 | Msa0435280:CDS | 40.0% | |
| ! | GCTCTTTCTGATTTTCGATG+AGG | + | chr3_2:88409889-88409908 | Msa0435280:three_prime_UTR | 40.0% |
| ! | TTCTGATTTTCGATGAGGAG+TGG | + | chr3_2:88409894-88409913 | Msa0435280:three_prime_UTR | 40.0% |
| TCTAACAGGCAAAGGAACAT+GGG | - | chr3_2:88409979-88409998 | None:intergenic | 40.0% | |
| ! | AAACAGCACGCTGTTTCAAA+AGG | - | chr3_2:88410096-88410115 | None:intergenic | 40.0% |
| TAAGACCAACGTTGAGGTTG+AGG | + | chr3_2:88404139-88404158 | Msa0435280:CDS | 45.0% | |
| GGTGGATAATAGAGCAATGG+TGG | - | chr3_2:88404290-88404309 | None:intergenic | 45.0% | |
| TTTGCAGAATGGAGCTTCCT+TGG | + | chr3_2:88404744-88404763 | Msa0435280:intron | 45.0% | |
| TCCGTATCGTATCTCGTATC+CGG | - | chr3_2:88404782-88404801 | None:intergenic | 45.0% | |
| !! | ATTTTCCCGTATCGGCGTAT+CGG | - | chr3_2:88404817-88404836 | None:intergenic | 45.0% |
| ATGTTAATGTGCTACGAGCC+TGG | - | chr3_2:88404958-88404977 | None:intergenic | 45.0% | |
| !!! | AGCACTGATGGTGCTCTTTT+TGG | - | chr3_2:88405043-88405062 | None:intergenic | 45.0% |
| CACAAGTATCCGTGAGTATC+GGG | + | chr3_2:88405255-88405274 | Msa0435280:intron | 45.0% | |
| GAAGCCCCGATACTTCAAAA+TGG | - | chr3_2:88405411-88405430 | None:intergenic | 45.0% | |
| AGGCGTCCTTAGATACGATA+GGG | - | chr3_2:88405528-88405547 | None:intergenic | 45.0% | |
| !! | AGTGCACAGTTTTCAGGCAA+AGG | - | chr3_2:88405784-88405803 | None:intergenic | 45.0% |
| TCTGGAAGACCATAGTGTGA+CGG | - | chr3_2:88405844-88405863 | None:intergenic | 45.0% | |
| ! | GCTGCTCAAACGTTTTACAC+TGG | + | chr3_2:88405892-88405911 | Msa0435280:CDS | 45.0% |
| ! | TGAATTTGAGGTTCCTCCTC+AGG | - | chr3_2:88405967-88405986 | None:intergenic | 45.0% |
| GGAGGAACCTCAAATTCATG+AGG | + | chr3_2:88405969-88405988 | Msa0435280:CDS | 45.0% | |
| AATGGAACTGCCGAGGAATT+CGG | + | chr3_2:88406006-88406025 | Msa0435280:CDS | 45.0% | |
| ACTCGGAGCACAAATTTGCA+GGG | - | chr3_2:88406122-88406141 | None:intergenic | 45.0% | |
| AACTCGGAGCACAAATTTGC+AGG | - | chr3_2:88406123-88406142 | None:intergenic | 45.0% | |
| GATTCACCTGAGTTAGAGTG+TGG | + | chr3_2:88406162-88406181 | Msa0435280:CDS | 45.0% | |
| GAATTCCCACACTCTAACTC+AGG | - | chr3_2:88406171-88406190 | None:intergenic | 45.0% | |
| TGTTCTTCTGTTCTCCAGAC+CGG | - | chr3_2:88406237-88406256 | None:intergenic | 45.0% | |
| GATTCTATTGCTTGCGAGGA+TGG | + | chr3_2:88406285-88406304 | Msa0435280:CDS | 45.0% | |
| AACTCTACTTCAGCCGTTTC+AGG | - | chr3_2:88406471-88406490 | None:intergenic | 45.0% | |
| TCTGTGCGACATGAAACAGA+CGG | - | chr3_2:88406525-88406544 | None:intergenic | 45.0% | |
| GTTTCATGTCGCACAGAAGT+AGG | + | chr3_2:88406528-88406547 | Msa0435280:CDS | 45.0% | |
| ! | GAAGCTGCCATTTGTAACTC+TGG | - | chr3_2:88406690-88406709 | None:intergenic | 45.0% |
| TTGAGGGTCTTTAGCTGAAG+CGG | - | chr3_2:88406712-88406731 | None:intergenic | 45.0% | |
| !! | TCATTACCAGATGATGGGAC+TGG | - | chr3_2:88406885-88406904 | None:intergenic | 45.0% |
| AGAAGAAACCTGAGCTCCTA+CGG | - | chr3_2:88406967-88406986 | None:intergenic | 45.0% | |
| CAGGTTTCTTCTCAGACAAC+GGG | + | chr3_2:88406975-88406994 | Msa0435280:CDS | 45.0% | |
| TTAGAACCACAAACAGGTCC+TGG | - | chr3_2:88407014-88407033 | None:intergenic | 45.0% | |
| ATTGTTTCCACCTAGGTCAC+TGG | - | chr3_2:88407102-88407121 | None:intergenic | 45.0% | |
| TGCTCTACATGCAAGTCCTA+AGG | + | chr3_2:88407145-88407164 | Msa0435280:CDS | 45.0% | |
| AAGAAACCAGCACTCGGAAA+TGG | + | chr3_2:88407230-88407249 | Msa0435280:CDS | 45.0% | |
| GGAAATGGCCTCAGAAATCA+TGG | + | chr3_2:88407245-88407264 | Msa0435280:CDS | 45.0% | |
| AGAAATCATGGCCAACCGAA+TGG | + | chr3_2:88407257-88407276 | Msa0435280:CDS | 45.0% | |
| !! | GAATGGTTCTAGCCTGAAAC+AGG | + | chr3_2:88407274-88407293 | Msa0435280:CDS | 45.0% |
| GTTCTAGCCTGAAACAGGAA+CGG | + | chr3_2:88407279-88407298 | Msa0435280:CDS | 45.0% | |
| TTCTAGCCTGAAACAGGAAC+GGG | + | chr3_2:88407280-88407299 | Msa0435280:CDS | 45.0% | |
| TCAGTTGCAACATGCTGAAG+TGG | + | chr3_2:88407328-88407347 | Msa0435280:CDS | 45.0% | |
| CAGTTGCAACATGCTGAAGT+GGG | + | chr3_2:88407329-88407348 | Msa0435280:CDS | 45.0% | |
| AGTTGCAACATGCTGAAGTG+GGG | + | chr3_2:88407330-88407349 | Msa0435280:CDS | 45.0% | |
| CTGATGTAGAAGCCATGGTA+AGG | + | chr3_2:88407450-88407469 | Msa0435280:intron | 45.0% | |
| !! | GAGCAGTTGGTAGTCTCTTA+AGG | + | chr3_2:88407828-88407847 | Msa0435280:intron | 45.0% |
| AAACGTACTATAAGGAGGGG+GGG | + | chr3_2:88407913-88407932 | Msa0435280:intron | 45.0% | |
| !! | TGGCCTTTGACTTGTGCTTT+CGG | + | chr3_2:88408079-88408098 | Msa0435280:intron | 45.0% |
| TATGGCTTCACATGGAGCAT+TGG | + | chr3_2:88408444-88408463 | Msa0435280:CDS | 45.0% | |
| !! | GGAGCATTGGCCCTATTATA+TGG | + | chr3_2:88408457-88408476 | Msa0435280:CDS | 45.0% |
| TCCCAACAACGTGAAGATCA+AGG | - | chr3_2:88408547-88408566 | None:intergenic | 45.0% | |
| ! | AGTGGGCCATGCTTTTATGA+TGG | + | chr3_2:88408973-88408992 | Msa0435280:intron | 45.0% |
| GATGGTTCAAATCATCCTGC+AGG | + | chr3_2:88408991-88409010 | Msa0435280:intron | 45.0% | |
| ATCGTCCAACTAAAACCTGC+AGG | - | chr3_2:88409009-88409028 | None:intergenic | 45.0% | |
| CTCATATCTAGACGTCAGGT+TGG | + | chr3_2:88409082-88409101 | Msa0435280:intron | 45.0% | |
| GGTAAATAGTTGGGATGCAG+AGG | + | chr3_2:88409282-88409301 | Msa0435280:intron | 45.0% | |
| TTTCCGGGAATACAACAGCA+GGG | - | chr3_2:88409920-88409939 | None:intergenic | 45.0% | |
| ATTTCCGGGAATACAACAGC+AGG | - | chr3_2:88409921-88409940 | None:intergenic | 45.0% | |
| TGCTGTTGTATTCCCGGAAA+TGG | + | chr3_2:88409920-88409939 | Msa0435280:three_prime_UTR | 45.0% | |
| CTCTAACAGGCAAAGGAACA+TGG | - | chr3_2:88409980-88409999 | None:intergenic | 45.0% | |
| AGATCATCCTCGGAAGTCCA+AGG | - | chr3_2:88404113-88404132 | None:intergenic | 50.0% | |
| CCGTATCGTATCTCGTATCC+GGG | - | chr3_2:88404781-88404800 | None:intergenic | 50.0% | |
| CCCGGATACGAGATACGATA+CGG | + | chr3_2:88404778-88404797 | Msa0435280:intron | 50.0% | |
| ! | CGGGACGTATCGGAAAGTAT+CGG | + | chr3_2:88405274-88405293 | Msa0435280:intron | 50.0% |
| !! | GAGAAGTATCGGGCAGGTAT+CGG | + | chr3_2:88405354-88405373 | Msa0435280:intron | 50.0% |
| ! | GAGGCGTCCTTAGATACGAT+AGG | - | chr3_2:88405529-88405548 | None:intergenic | 50.0% |
| GACGCCTCTTCCTCTATAAC+AGG | + | chr3_2:88405541-88405560 | Msa0435280:CDS | 50.0% | |
| CCTGAAAACTGTGCACTCGA+GGG | + | chr3_2:88405787-88405806 | Msa0435280:CDS | 50.0% | |
| TCCTGACATTCAGGACATGC+CGG | + | chr3_2:88406215-88406234 | Msa0435280:CDS | 50.0% | |
| GGTCTGGAGAACAGAAGAAC+AGG | + | chr3_2:88406236-88406255 | Msa0435280:CDS | 50.0% | |
| TGCTTGCGAGGATGGTTATC+TGG | + | chr3_2:88406293-88406312 | Msa0435280:CDS | 50.0% | |
| ACAGAAGTAGGCGACAATGC+AGG | + | chr3_2:88406540-88406559 | Msa0435280:CDS | 50.0% | |
| GTTGGGGGAGGCTCATTAAA+GGG | - | chr3_2:88406819-88406838 | None:intergenic | 50.0% | |
| TGTTGGGGGAGGCTCATTAA+AGG | - | chr3_2:88406820-88406839 | None:intergenic | 50.0% | |
| GAACAGGAAATTGTTGGGGG+AGG | - | chr3_2:88406831-88406850 | None:intergenic | 50.0% | |
| !! | AGCAGCTGATTCGGATGAAC+AGG | - | chr3_2:88406847-88406866 | None:intergenic | 50.0% |
| AAAAAGCTCCGTAGGAGCTC+AGG | + | chr3_2:88406956-88406975 | Msa0435280:CDS | 50.0% | |
| AACAGGTCCTGGAAGGCAAT+GGG | - | chr3_2:88407003-88407022 | None:intergenic | 50.0% | |
| AAACAGGTCCTGGAAGGCAA+TGG | - | chr3_2:88407004-88407023 | None:intergenic | 50.0% | |
| AACCACAAACAGGTCCTGGA+AGG | - | chr3_2:88407010-88407029 | None:intergenic | 50.0% | |
| ATTGCTTCCAGTGACCTAGG+TGG | + | chr3_2:88407092-88407111 | Msa0435280:CDS | 50.0% | |
| ! | TCGGTTGGCCATGATTTCTG+AGG | - | chr3_2:88407256-88407275 | None:intergenic | 50.0% |
| TCAGGCTAGAACCATTCGGT+TGG | - | chr3_2:88407271-88407290 | None:intergenic | 50.0% | |
| CTACATCCCGTTCCTGTTTC+AGG | - | chr3_2:88407289-88407308 | None:intergenic | 50.0% | |
| !! | AGATGTTCTGGGGTCTGAGA+TGG | + | chr3_2:88407358-88407377 | Msa0435280:CDS | 50.0% |
| CAACACAGCATGCCTTACCA+TGG | - | chr3_2:88407465-88407484 | None:intergenic | 50.0% | |
| !! | GTGGCCAGGAATTTTAGTGG+TGG | + | chr3_2:88407631-88407650 | Msa0435280:intron | 50.0% |
| AAGTGTGCTCCCATACCATG+AGG | - | chr3_2:88407799-88407818 | None:intergenic | 50.0% | |
| !! | GGCCTTTGACTTGTGCTTTC+GGG | + | chr3_2:88408080-88408099 | Msa0435280:intron | 50.0% |
| ! | GTCCCGAAAGCACAAGTCAA+AGG | - | chr3_2:88408085-88408104 | None:intergenic | 50.0% |
| !! | TAAGCGGGCTATCATAAGGC+TGG | + | chr3_2:88408390-88408409 | Msa0435280:CDS | 50.0% |
| GCTATCATAAGGCTGGAGCA+GGG | + | chr3_2:88408397-88408416 | Msa0435280:CDS | 50.0% | |
| CAGAGAGCTATGGCTTCACA+TGG | + | chr3_2:88408436-88408455 | Msa0435280:CDS | 50.0% | |
| GTTCACAGTGAAGCTACCAG+TGG | - | chr3_2:88409543-88409562 | None:intergenic | 50.0% | |
| TGGTATGAAGCGGTAGCAAC+TGG | + | chr3_2:88409780-88409799 | Msa0435280:exon | 50.0% | |
| AGTTGCGCAAGTCCATTTCC+GGG | - | chr3_2:88409935-88409954 | None:intergenic | 50.0% | |
| GAGTTGCGCAAGTCCATTTC+CGG | - | chr3_2:88409936-88409955 | None:intergenic | 50.0% | |
| AACAGGCAAAGGAACATGGG+TGG | - | chr3_2:88409976-88409995 | None:intergenic | 50.0% | |
| TTCTCCTCCTTGGACTTCCG+AGG | + | chr3_2:88404103-88404122 | Msa0435280:CDS | 55.0% | |
| TCATCCTCGGAAGTCCAAGG+AGG | - | chr3_2:88404110-88404129 | None:intergenic | 55.0% | |
| TCCTTGGAAGCTGTGAAGCC+CGG | + | chr3_2:88404760-88404779 | Msa0435280:intron | 55.0% | |
| ! | ACTGCACCGATACGCCGATA+CGG | + | chr3_2:88404808-88404827 | Msa0435280:intron | 55.0% |
| CCGATACGTCCCGATACTCA+CGG | - | chr3_2:88405267-88405286 | None:intergenic | 55.0% | |
| !! | CCGTGAGTATCGGGACGTAT+CGG | + | chr3_2:88405264-88405283 | Msa0435280:intron | 55.0% |
| !! | CGTATCGAGAAGTATCGGGC+AGG | + | chr3_2:88405348-88405367 | Msa0435280:intron | 55.0% |
| ! | GTATCGGTGCAGGATACGCA+GGG | + | chr3_2:88405370-88405389 | Msa0435280:intron | 55.0% |
| TATCGGTGCAGGATACGCAG+GGG | + | chr3_2:88405371-88405390 | Msa0435280:intron | 55.0% | |
| ! | AGTATCGGGGCTTCACAGCT+TGG | + | chr3_2:88405417-88405436 | Msa0435280:intron | 55.0% |
| GCCTGAAAACTGTGCACTCG+AGG | + | chr3_2:88405786-88405805 | Msa0435280:CDS | 55.0% | |
| ! | CCCTCGAGTGCACAGTTTTC+AGG | - | chr3_2:88405790-88405809 | None:intergenic | 55.0% |
| GCTTCTGAATGGAACTGCCG+AGG | + | chr3_2:88405999-88406018 | Msa0435280:CDS | 55.0% | |
| ACCGGCATGTCCTGAATGTC+AGG | - | chr3_2:88406219-88406238 | None:intergenic | 55.0% | |
| ACATTCAGGACATGCCGGTC+TGG | + | chr3_2:88406220-88406239 | Msa0435280:CDS | 55.0% | |
| GGGGAGGCTCATTAAAGGGT+AGG | - | chr3_2:88406815-88406834 | None:intergenic | 55.0% | |
| GGAGATAGAGCTAGCAGGAG+AGG | + | chr3_2:88406909-88406928 | Msa0435280:CDS | 55.0% | |
| TGCCTTCCAGGACCTGTTTG+TGG | + | chr3_2:88407005-88407024 | Msa0435280:CDS | 55.0% | |
| CTCAGACCCCAGAACATCTG+CGG | - | chr3_2:88407357-88407376 | None:intergenic | 55.0% | |
| !! | TGTTCTGGGGTCTGAGATGG+TGG | + | chr3_2:88407361-88407380 | Msa0435280:CDS | 55.0% |
| GGCTATCATAAGGCTGGAGC+AGG | + | chr3_2:88408396-88408415 | Msa0435280:CDS | 55.0% | |
| TGGCCCTGCTGTTGTATTCC+CGG | + | chr3_2:88409914-88409933 | Msa0435280:three_prime_UTR | 55.0% | |
| !! | GAACATGGGTGGTGGTGGTA+GGG | - | chr3_2:88409965-88409984 | None:intergenic | 55.0% |
| ! | CAAAGGAACATGGGTGGTGG+TGG | - | chr3_2:88409970-88409989 | None:intergenic | 55.0% |
| AGGCAAAGGAACATGGGTGG+TGG | - | chr3_2:88409973-88409992 | None:intergenic | 55.0% | |
| TCCGGGCTTCACAGCTTCCA+AGG | - | chr3_2:88404764-88404783 | None:intergenic | 60.0% | |
| ! | CTGCACCGATACGCCGATAC+GGG | + | chr3_2:88404809-88404828 | Msa0435280:intron | 60.0% |
| !! | TATCGGGCAGGTATCGGTGC+AGG | + | chr3_2:88405360-88405379 | Msa0435280:intron | 60.0% |
| !! | GGTATCGGTGCAGGATACGC+AGG | + | chr3_2:88405369-88405388 | Msa0435280:intron | 60.0% |
| CTGAGGCCATTTCCGAGTGC+TGG | - | chr3_2:88407239-88407258 | None:intergenic | 60.0% | |
| AGTGGGGTCCGCAGATGTTC+TGG | + | chr3_2:88407346-88407365 | Msa0435280:CDS | 60.0% | |
| GTGGGGTCCGCAGATGTTCT+GGG | + | chr3_2:88407347-88407366 | Msa0435280:CDS | 60.0% | |
| TGGGGTCCGCAGATGTTCTG+GGG | + | chr3_2:88407348-88407367 | Msa0435280:CDS | 60.0% | |
| !! | GGAACATGGGTGGTGGTGGT+AGG | - | chr3_2:88409966-88409985 | None:intergenic | 60.0% |
| ACGGGAGCCCATTGCCTTCC+AGG | + | chr3_2:88406993-88407012 | Msa0435280:CDS | 65.0% | |
| !! | CATGGGTGGTGGTGGTAGGG+AGG | - | chr3_2:88409962-88409981 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 88404077 | 88410164 | 88404077 | ID=Msa0435280;Name=Msa0435280 |
| chr3_2 | mRNA | 88404077 | 88410164 | 88404077 | ID=Msa0435280-mRNA-1;Parent=Msa0435280;Name=Msa0435280-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.83|0.71|1|1|1|7|369|844 |
| chr3_2 | exon | 88404077 | 88404160 | 88404077 | ID=Msa0435280-mRNA-1:exon:25990;Parent=Msa0435280-mRNA-1 |
| chr3_2 | exon | 88405490 | 88407466 | 88405490 | ID=Msa0435280-mRNA-1:exon:25991;Parent=Msa0435280-mRNA-1 |
| chr3_2 | exon | 88407563 | 88407617 | 88407563 | ID=Msa0435280-mRNA-1:exon:25992;Parent=Msa0435280-mRNA-1 |
| chr3_2 | exon | 88408365 | 88408513 | 88408365 | ID=Msa0435280-mRNA-1:exon:25993;Parent=Msa0435280-mRNA-1 |
| chr3_2 | exon | 88409013 | 88409099 | 88409013 | ID=Msa0435280-mRNA-1:exon:25994;Parent=Msa0435280-mRNA-1 |
| chr3_2 | exon | 88409374 | 88409502 | 88409374 | ID=Msa0435280-mRNA-1:exon:25995;Parent=Msa0435280-mRNA-1 |
| chr3_2 | exon | 88409742 | 88410164 | 88409742 | ID=Msa0435280-mRNA-1:exon:25996;Parent=Msa0435280-mRNA-1 |
| chr3_2 | CDS | 88404077 | 88404160 | 88404077 | ID=Msa0435280-mRNA-1:cds;Parent=Msa0435280-mRNA-1 |
| chr3_2 | CDS | 88405490 | 88407466 | 88405490 | ID=Msa0435280-mRNA-1:cds;Parent=Msa0435280-mRNA-1 |
| chr3_2 | CDS | 88407563 | 88407617 | 88407563 | ID=Msa0435280-mRNA-1:cds;Parent=Msa0435280-mRNA-1 |
| chr3_2 | CDS | 88408365 | 88408513 | 88408365 | ID=Msa0435280-mRNA-1:cds;Parent=Msa0435280-mRNA-1 |
| chr3_2 | CDS | 88409013 | 88409099 | 88409013 | ID=Msa0435280-mRNA-1:cds;Parent=Msa0435280-mRNA-1 |
| chr3_2 | CDS | 88409374 | 88409502 | 88409374 | ID=Msa0435280-mRNA-1:cds;Parent=Msa0435280-mRNA-1 |
| chr3_2 | CDS | 88409742 | 88409795 | 88409742 | ID=Msa0435280-mRNA-1:cds;Parent=Msa0435280-mRNA-1 |
| chr3_2 | three_prime_UTR | 88409796 | 88410164 | 88409796 | ID=Msa0435280-mRNA-1:three_prime_utr;Parent=Msa0435280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
