AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1456040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1456040 MtrunA17_Chr3g0137174 98.413 189 3 0 1 189 1 189 1.14e-140 389
Msa1456040 MtrunA17_Chr4g0002631 66.667 192 56 3 1 184 1 192 1.51e-77 230
Msa1456040 MtrunA17_Chr4g0003421 58.586 99 26 1 6 89 38 136 3.71e-34 121
Msa1456040 MtrunA17_Chr4g0063751 58.947 95 28 1 6 89 5 99 4.82e-33 117
Msa1456040 MtrunA17_Chr2g0333011 65.556 90 25 1 6 89 5 94 2.29e-32 114
Msa1456040 MtrunA17_Chr3g0115631 38.095 147 77 3 1 139 143 283 3.89e-24 97.1
Msa1456040 MtrunA17_Chr8g0383591 56.164 73 32 0 3 75 140 212 7.71e-24 95.9
Msa1456040 MtrunA17_Chr2g0316931 48.598 107 42 3 7 100 30 136 9.01e-24 93.2
Msa1456040 MtrunA17_Chr8g0382491 55.422 83 29 2 2 77 107 188 4.20e-23 93.2
Msa1456040 MtrunA17_Chr1g0196781 56.790 81 34 1 8 87 152 232 5.44e-23 93.6
Msa1456040 MtrunA17_Chr1g0149331 37.681 207 80 5 5 175 4 197 5.72e-23 90.9
Msa1456040 MtrunA17_Chr5g0425561 52.874 87 38 1 3 86 168 254 5.79e-23 94.4
Msa1456040 MtrunA17_Chr2g0323171 71.930 57 16 0 8 64 65 121 6.76e-23 90.5
Msa1456040 MtrunA17_Chr8g0375031 62.295 61 23 0 5 65 122 182 7.19e-23 91.3
Msa1456040 MtrunA17_Chr3g0099871 63.333 60 22 0 5 64 24 83 4.05e-22 89.4
Msa1456040 MtrunA17_Chr7g0221471 64.912 57 20 0 8 64 51 107 5.03e-22 87.8
Msa1456040 MtrunA17_Chr3g0137831 64.000 75 27 0 1 75 1 75 6.58e-22 88.6
Msa1456040 MtrunA17_Chr7g0221501 64.912 57 20 0 8 64 51 107 6.78e-22 87.4
Msa1456040 MtrunA17_Chr6g0453661 56.471 85 32 2 3 86 33 113 1.47e-21 90.5
Msa1456040 MtrunA17_Chr2g0295421 55.072 69 31 0 8 76 96 164 1.77e-21 88.6
Msa1456040 MtrunA17_Chr2g0324131 60.563 71 21 1 1 64 204 274 2.34e-21 90.1
Msa1456040 MtrunA17_Chr2g0282651 59.016 61 25 0 5 65 67 127 8.38e-21 86.7
Msa1456040 MtrunA17_Chr4g0023411 66.667 57 19 0 8 64 65 121 1.01e-20 85.1
Msa1456040 MtrunA17_Chr7g0252381 58.904 73 30 0 7 79 41 113 1.08e-20 86.7
Msa1456040 MtrunA17_Chr7g0217991 51.163 86 40 1 3 88 37 120 1.32e-20 88.2
Msa1456040 MtrunA17_Chr5g0437671 63.333 60 22 0 5 64 82 141 1.81e-20 87.4
Msa1456040 MtrunA17_Chr5g0437371 66.667 57 19 0 7 63 65 121 1.84e-20 87.0
Msa1456040 MtrunA17_Chr7g0257911 63.793 58 21 0 8 65 31 88 2.60e-20 85.9
Msa1456040 MtrunA17_Chr4g0044911 66.667 57 19 0 8 64 96 152 3.20e-20 84.7
Msa1456040 MtrunA17_Chr2g0334031 48.837 86 38 2 5 84 114 199 3.62e-20 86.3
Msa1456040 MtrunA17_Chr2g0282621 61.667 60 23 0 8 67 15 74 4.42e-20 82.8
Msa1456040 MtrunA17_Chr8g0344961 54.412 68 31 0 5 72 121 188 5.58e-20 85.9
Msa1456040 MtrunA17_Chr1g0195151 61.404 57 22 0 8 64 77 133 6.37e-20 85.1
Msa1456040 MtrunA17_Chr4g0044871 64.912 57 20 0 8 64 96 152 7.61e-20 83.6
Msa1456040 MtrunA17_Chr4g0044881 61.667 60 23 0 5 64 111 170 9.49e-20 83.6
Msa1456040 MtrunA17_Chr4g0044901 64.912 57 20 0 8 64 96 152 1.52e-19 82.8
Msa1456040 MtrunA17_Chr4g0062551 58.333 60 25 0 5 64 50 109 1.96e-19 80.1
Msa1456040 MtrunA17_Chr5g0396911 52.632 76 35 1 4 79 108 182 2.32e-19 83.6
Msa1456040 MtrunA17_Chr5g0412641 66.102 59 20 0 7 65 45 103 3.63e-19 83.6
Msa1456040 MtrunA17_Chr1g0150631 31.638 177 106 3 8 169 38 214 3.72e-19 81.6
Msa1456040 MtrunA17_Chr4g0062161 58.333 60 25 0 5 64 50 109 8.16e-19 80.1
Msa1456040 MtrunA17_Chr8g0387801 48.889 90 44 1 6 93 105 194 8.29e-19 82.0
Msa1456040 MtrunA17_Chr4g0042761 60.656 61 24 0 3 63 43 103 8.82e-19 82.0
Msa1456040 MtrunA17_Chr5g0399441 63.158 57 21 0 8 64 28 84 9.89e-19 79.3
Msa1456040 MtrunA17_Chr8g0367911 64.407 59 21 0 7 65 43 101 1.08e-18 81.6
Msa1456040 MtrunA17_Chr5g0438831 60.345 58 23 0 7 64 45 102 1.64e-18 80.9
Msa1456040 MtrunA17_Chr6g0486701 64.912 57 20 0 8 64 44 100 1.64e-18 79.7
Msa1456040 MtrunA17_Chr3g0140161 64.912 57 20 0 8 64 43 99 1.73e-18 79.0
Msa1456040 MtrunA17_Chr4g0055761 53.425 73 33 1 6 77 143 215 1.82e-18 80.5
Msa1456040 MtrunA17_Chr5g0432821 53.125 64 30 0 1 64 117 180 2.36e-18 80.5
Msa1456040 MtrunA17_Chr7g0253424 63.158 57 21 0 7 63 38 94 3.17e-18 79.7
Msa1456040 MtrunA17_Chr4g0017851 63.158 57 21 0 8 64 118 174 3.71e-18 80.1
Msa1456040 MtrunA17_Chr8g0335311 54.286 70 29 2 6 72 94 163 4.63e-18 78.2
Msa1456040 MtrunA17_Chr5g0438801 60.345 58 23 0 7 64 50 107 5.52e-18 79.3
Msa1456040 MtrunA17_Chr7g0232261 64.912 57 20 0 8 64 61 117 6.66e-18 78.6
Msa1456040 MtrunA17_Chr7g0275841 59.649 57 23 0 8 64 28 84 6.71e-18 77.0
Msa1456040 MtrunA17_Chr8g0340311 59.677 62 25 0 8 69 47 108 6.84e-18 77.8
Msa1456040 MtrunA17_Chr3g0126321 58.621 58 24 0 6 63 111 168 8.39e-18 79.7
Msa1456040 MtrunA17_Chr8g0390091 64.912 57 20 0 8 64 37 93 8.71e-18 78.2
Msa1456040 MtrunA17_Chr4g0055951 63.158 57 21 0 8 64 74 130 9.31e-18 78.6
Msa1456040 MtrunA17_Chr4g0055781 46.512 86 41 2 5 89 99 180 1.08e-17 78.2
Msa1456040 MtrunA17_Chr8g0378811 43.617 94 50 1 1 94 48 138 1.08e-17 78.6
Msa1456040 MtrunA17_Chr2g0301191 55.000 60 27 0 8 67 19 78 1.43e-17 77.0
Msa1456040 MtrunA17_Chr1g0150691 56.667 60 26 0 8 67 22 81 1.84e-17 77.0
Msa1456040 MtrunA17_Chr4g0066931 54.688 64 29 0 7 70 52 115 1.94e-17 78.6
Msa1456040 MtrunA17_Chr7g0243431 58.730 63 19 1 8 63 78 140 3.30e-17 78.6
Msa1456040 MtrunA17_Chr1g0150671 53.968 63 29 0 5 67 43 105 3.63e-17 77.4
Msa1456040 MtrunA17_Chr4g0055801 56.923 65 27 1 5 68 151 215 3.82e-17 77.4
Msa1456040 MtrunA17_Chr3g0134161 56.140 57 25 0 8 64 45 101 3.94e-17 75.1
Msa1456040 MtrunA17_Chr1g0184081 60.000 60 23 1 7 65 20 79 4.08e-17 74.3
Msa1456040 MtrunA17_Chr1g0150661 55.000 60 27 0 8 67 35 94 4.39e-17 75.9
Msa1456040 MtrunA17_Chr1g0189941 51.471 68 31 1 8 75 24 89 4.41e-17 74.7
Msa1456040 MtrunA17_Chr8g0346741 57.895 57 24 0 8 64 39 95 4.76e-17 75.1
Msa1456040 MtrunA17_Chr6g0461271 57.627 59 25 0 5 63 30 88 5.64e-17 77.0
Msa1456040 MtrunA17_Chr2g0331231 61.404 57 22 0 8 64 41 97 7.27e-17 75.1
Msa1456040 MtrunA17_Chr5g0401871 53.333 60 28 0 5 64 22 81 8.44e-17 74.3
Msa1456040 MtrunA17_Chr1g0170531 54.839 62 27 1 6 66 87 148 1.02e-16 75.1
Msa1456040 MtrunA17_Chr8g0334801 61.404 57 22 0 8 64 52 108 1.03e-16 74.7
Msa1456040 MtrunA17_Chr2g0301171 53.333 60 28 0 8 67 19 78 1.04e-16 74.7
Msa1456040 MtrunA17_Chr7g0265851 52.564 78 31 1 8 85 24 95 1.27e-16 74.3
Msa1456040 MtrunA17_Chr8g0350701 58.621 58 24 0 6 63 25 82 1.62e-16 75.9
Msa1456040 MtrunA17_Chr4g0046161 53.968 63 28 1 5 66 54 116 1.72e-16 72.0
Msa1456040 MtrunA17_Chr2g0286161 36.842 114 65 2 7 120 49 155 1.74e-16 75.5
Msa1456040 MtrunA17_Chr3g0136551 43.590 78 41 1 3 77 60 137 2.43e-16 74.7
Msa1456040 MtrunA17_Chr1g0158971 50.000 74 35 1 5 76 112 185 2.78e-16 75.5
Msa1456040 MtrunA17_Chr1g0200931 53.521 71 31 2 2 71 17 86 2.79e-16 72.0
Msa1456040 MtrunA17_Chr1g0186731 54.688 64 28 1 2 64 15 78 3.43e-16 72.0
Msa1456040 MtrunA17_Chr8g0335331 49.296 71 35 1 8 77 125 195 6.64e-16 72.4
Msa1456040 MtrunA17_Chr2g0283171 54.098 61 27 1 5 64 60 120 1.18e-15 70.9
Msa1456040 MtrunA17_Chr1g0153151 54.386 57 26 0 8 64 44 100 1.21e-15 71.2
Msa1456040 MtrunA17_Chr2g0301181 51.667 60 29 0 8 67 19 78 1.57e-15 72.0
Msa1456040 MtrunA17_Chr2g0283181 53.968 63 28 1 3 64 144 206 2.74e-15 72.0
Msa1456040 MtrunA17_Chr7g0250731 52.459 61 28 1 6 65 59 119 4.94e-15 70.1
Msa1456040 MtrunA17_Chr4g0026881 55.172 58 25 1 8 64 97 154 5.45e-15 70.5
Msa1456040 MtrunA17_Chr2g0297331 59.322 59 23 1 7 64 13 71 7.01e-15 68.2
Msa1456040 MtrunA17_Chr7g0250711 52.459 61 28 1 6 65 58 118 8.06e-15 69.7
Msa1456040 MtrunA17_Chr7g0261151 57.377 61 25 1 5 64 17 77 8.28e-15 68.2
Msa1456040 MtrunA17_Chr7g0250721 52.459 61 28 1 6 65 59 119 9.13e-15 69.7
Msa1456040 MtrunA17_Chr1g0184061 51.613 62 29 1 5 65 74 135 9.68e-15 69.7
Msa1456040 MtrunA17_Chr1g0196871 56.897 58 24 1 8 64 16 73 9.80e-15 67.0
Msa1456040 MtrunA17_Chr8g0335321 50.820 61 29 1 6 65 94 154 1.70e-14 68.9
Msa1456040 MtrunA17_Chr1g0186671 59.322 59 23 1 7 64 18 76 1.73e-14 67.4
Msa1456040 MtrunA17_Chr6g0473961 60.714 56 22 0 8 63 54 109 1.89e-14 68.9
Msa1456040 MtrunA17_Chr7g0261101 56.667 60 25 1 7 65 19 78 2.26e-14 67.0
Msa1456040 MtrunA17_Chr1g0203861 60.714 56 22 0 8 63 44 99 2.91e-14 68.2
Msa1456040 MtrunA17_Chr6g0473861 60.714 56 22 0 8 63 63 118 3.00e-14 69.3
Msa1456040 MtrunA17_Chr6g0473941 60.714 56 22 0 8 63 33 88 3.34e-14 68.2
Msa1456040 MtrunA17_Chr3g0136541 46.479 71 35 1 10 77 42 112 3.45e-14 68.6
Msa1456040 MtrunA17_Chr5g0396191 68.421 57 18 0 8 64 11 67 4.91e-14 67.0
Msa1456040 MtrunA17_Chr6g0473971 58.929 56 23 0 8 63 54 109 5.08e-14 68.2
Msa1456040 MtrunA17_Chr6g0473881 58.929 56 23 0 8 63 110 165 5.29e-14 68.9
Msa1456040 MtrunA17_Chr6g0473931 60.714 56 22 0 8 63 33 88 5.79e-14 67.0
Msa1456040 MtrunA17_Chr6g0473741 58.929 56 23 0 8 63 66 121 8.14e-14 67.4
Msa1456040 MtrunA17_Chr6g0473781 58.929 56 23 0 8 63 57 112 1.06e-13 67.0
Msa1456040 MtrunA17_Chr1g0205961 46.774 62 32 1 3 64 110 170 1.28e-13 68.2
Msa1456040 MtrunA17_Chr1g0183981 53.333 60 27 1 5 63 72 131 1.28e-13 66.6
Msa1456040 MtrunA17_Chr6g0473981 58.929 56 23 0 8 63 54 109 1.70e-13 66.6
Msa1456040 MtrunA17_Chr1g0146191 65.517 58 20 0 8 65 47 104 3.04e-13 66.2
Msa1456040 MtrunA17_Chr6g0474001 57.143 56 24 0 8 63 54 109 3.25e-13 66.2
Msa1456040 MtrunA17_Chr4g0026931 36.154 130 75 4 9 134 132 257 4.04e-13 65.9
Msa1456040 MtrunA17_Chr7g0225131 53.333 60 25 1 8 67 29 85 4.30e-13 62.4
Msa1456040 MtrunA17_Chr1g0184031 54.386 57 25 1 8 63 84 140 5.45e-13 65.1
Msa1456040 MtrunA17_Chr6g0486711 66.667 57 19 0 8 64 49 105 5.49e-13 65.1
Msa1456040 MtrunA17_Chr3g0129421 62.903 62 23 0 5 66 167 228 5.54e-13 66.2
Msa1456040 MtrunA17_Chr1g0186681 53.333 60 26 1 7 64 18 77 6.06e-13 62.8
Msa1456040 MtrunA17_Chr1g0184011 54.545 55 24 1 10 63 86 140 8.14e-13 64.7
Msa1456040 MtrunA17_Chr3g0142081 57.377 61 26 0 4 64 35 95 1.05e-12 64.3
Msa1456040 MtrunA17_Chr5g0438841 40.449 89 51 1 7 93 15 103 1.16e-12 63.2
Msa1456040 MtrunA17_Chr1g0155751 59.649 57 23 0 8 64 39 95 1.18e-12 64.7
Msa1456040 MtrunA17_Chr8g0345531 57.447 47 19 1 7 53 115 160 1.59e-12 64.7
Msa1456040 MtrunA17_Chr1g0184071 51.667 60 28 1 5 63 66 125 1.78e-12 62.8
Msa1456040 MtrunA17_Chr1g0209891 30.303 132 72 4 7 119 53 183 2.13e-12 64.3
Msa1456040 MtrunA17_Chr6g0473771 53.571 56 26 0 8 63 43 98 3.30e-12 60.5
Msa1456040 MtrunA17_Chr3g0131601 64.912 57 20 0 8 64 76 132 3.34e-12 63.2
Msa1456040 MtrunA17_Chr1g0183961 58.333 72 29 1 5 75 24 95 3.49e-12 61.2
Msa1456040 MtrunA17_Chr5g0396301 49.206 63 26 2 6 64 16 76 5.07e-12 61.2
Msa1456040 MtrunA17_Chr6g0473791 63.636 44 16 0 8 51 57 100 5.41e-12 60.8
Msa1456040 MtrunA17_Chr7g0261181 51.852 81 29 2 5 75 10 90 5.71e-12 60.5
Msa1456040 MtrunA17_Chr4g0057241 54.386 57 25 1 8 64 15 70 7.69e-12 60.8
Msa1456040 MtrunA17_Chr3g0114761 55.072 69 30 1 5 73 22 89 1.26e-11 61.2
Msa1456040 MtrunA17_Chr8g0345551 58.537 41 17 0 8 48 117 157 1.37e-11 62.0
Msa1456040 MtrunA17_Chr5g0423811 55.556 45 20 0 3 47 83 127 2.33e-11 61.2
Msa1456040 MtrunA17_Chr5g0424051 60.656 61 23 1 5 64 93 153 3.11e-11 60.8
Msa1456040 MtrunA17_Chr4g0002771 64.407 59 21 0 5 63 74 132 3.28e-11 59.7
Msa1456040 MtrunA17_Chr1g0170471 50.909 55 26 1 16 69 91 145 5.15e-11 58.9
Msa1456040 MtrunA17_Chr2g0321071 54.237 59 25 2 8 64 47 105 6.39e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1456040 AT5G25190.1 66.321 193 48 3 1 189 1 180 8.74e-83 243
Msa1456040 AT1G15360.1 72.464 69 19 0 6 74 5 73 2.34e-32 115
Msa1456040 AT1G15360.2 72.464 69 19 0 6 74 5 73 2.34e-32 115
Msa1456040 AT5G25390.2 40.722 194 72 9 6 176 5 178 2.12e-29 107
Msa1456040 AT5G25390.1 39.691 194 71 10 6 176 5 175 4.87e-26 99.0
Msa1456040 AT1G22190.1 52.941 85 37 1 2 86 77 158 9.51e-24 94.7
Msa1456040 AT5G65130.2 53.571 84 37 1 3 86 108 189 2.44e-23 94.0
Msa1456040 AT5G65130.1 53.571 84 37 1 3 86 106 187 2.54e-23 94.0
Msa1456040 AT1G78080.1 41.259 143 77 3 2 143 146 282 3.65e-23 94.7
Msa1456040 AT1G36060.1 51.648 91 39 2 1 86 136 226 1.41e-22 92.8
Msa1456040 AT3G15210.1 67.241 58 19 0 7 64 24 81 1.72e-22 90.5
Msa1456040 AT4G13620.1 52.747 91 31 2 4 94 228 306 2.48e-22 92.8
Msa1456040 AT4G39780.1 66.667 60 20 0 5 64 90 149 7.07e-22 90.1
Msa1456040 AT5G11190.1 58.242 91 24 1 6 82 5 95 8.08e-22 88.2
Msa1456040 AT2G22200.1 61.905 63 24 0 2 64 65 127 8.12e-22 89.7
Msa1456040 AT3G20310.1 48.352 91 43 1 5 95 24 110 8.58e-22 89.4
Msa1456040 AT5G44210.1 61.290 62 24 0 3 64 28 89 4.30e-21 86.7
Msa1456040 AT5G13910.1 57.534 73 31 0 7 79 19 91 7.98e-21 85.9
Msa1456040 AT3G11020.1 68.421 57 18 0 8 64 78 134 1.14e-20 87.8
Msa1456040 AT5G13330.1 62.903 62 22 1 4 64 34 95 2.08e-20 85.1
Msa1456040 AT1G21910.1 45.794 107 44 2 8 114 50 142 2.10e-20 85.5
Msa1456040 AT1G28370.1 60.317 63 24 1 7 68 19 81 3.03e-20 83.6
Msa1456040 AT5G05410.2 51.220 82 39 1 8 89 79 159 3.07e-20 86.3
Msa1456040 AT1G28370.2 60.317 63 24 1 7 68 57 119 3.36e-20 84.3
Msa1456040 AT2G20880.1 66.667 57 19 0 8 64 187 243 3.66e-20 86.7
Msa1456040 AT1G28360.1 63.158 57 21 0 8 64 12 68 4.15e-20 83.6
Msa1456040 AT5G61890.1 64.912 57 20 0 8 64 90 146 4.17e-20 85.1
Msa1456040 AT5G05410.1 51.220 82 39 1 8 89 79 159 4.53e-20 86.3
Msa1456040 AT1G50640.1 60.000 60 24 0 7 66 27 86 4.62e-20 84.3
Msa1456040 AT2G40340.2 38.235 136 81 1 8 143 14 146 6.33e-20 85.1
Msa1456040 AT2G40340.5 38.235 136 81 1 8 143 14 146 6.33e-20 85.1
Msa1456040 AT2G40340.4 38.235 136 81 1 8 143 14 146 6.33e-20 85.1
Msa1456040 AT1G72360.1 58.621 58 24 0 7 64 24 81 7.59e-20 83.6
Msa1456040 AT1G03800.1 60.345 58 23 0 7 64 52 109 7.88e-20 84.0
Msa1456040 AT1G19210.1 55.385 65 29 0 5 69 9 73 9.35e-20 82.8
Msa1456040 AT1G24590.1 66.102 59 20 0 7 65 57 115 9.95e-20 84.7
Msa1456040 AT2G47520.1 53.623 69 31 1 8 76 50 117 1.05e-19 82.0
Msa1456040 AT1G12980.1 48.889 90 46 0 7 96 56 145 1.21e-19 85.1
Msa1456040 AT2G40340.6 38.235 136 81 1 8 143 79 211 1.42e-19 85.1
Msa1456040 AT2G40340.1 38.235 136 81 1 8 143 72 204 1.43e-19 84.7
Msa1456040 AT1G72360.3 58.621 58 24 0 7 64 73 130 2.14e-19 83.2
Msa1456040 AT1G72360.2 58.621 58 24 0 7 64 75 132 2.30e-19 83.2
Msa1456040 AT2G33710.1 60.000 60 24 0 5 64 67 126 2.38e-19 82.4
Msa1456040 AT1G71450.1 53.488 86 36 1 8 89 24 109 2.42e-19 81.6
Msa1456040 AT2G33710.2 60.000 60 24 0 5 64 67 126 3.14e-19 82.4
Msa1456040 AT2G40340.3 49.367 79 37 1 8 86 72 147 3.24e-19 83.6
Msa1456040 AT4G32800.1 65.000 60 21 0 5 64 16 75 4.24e-19 81.6
Msa1456040 AT4G06746.1 55.000 60 27 0 5 64 33 92 5.02e-19 79.7
Msa1456040 AT1G12890.1 57.812 64 27 0 7 70 20 83 5.20e-19 81.3
Msa1456040 AT1G74930.1 55.556 63 28 0 5 67 18 80 5.62e-19 80.9
Msa1456040 AT3G16280.1 66.667 57 19 0 8 64 61 117 8.31e-19 81.3
Msa1456040 AT3G16280.2 66.667 57 19 0 8 64 79 135 1.03e-18 81.3
Msa1456040 AT2G35700.1 64.912 57 20 0 8 64 45 101 1.07e-18 80.1
Msa1456040 AT4G27950.1 58.730 63 26 0 5 67 115 177 1.17e-18 82.4
Msa1456040 AT5G19790.1 60.294 68 26 1 7 73 21 88 1.67e-18 80.9
Msa1456040 AT4G16750.1 61.667 60 23 0 5 64 37 96 1.79e-18 79.0
Msa1456040 AT4G11140.1 34.711 121 76 1 6 123 85 205 2.16e-18 80.9
Msa1456040 AT5G18560.1 60.656 61 24 0 7 67 54 114 2.21e-18 81.6
Msa1456040 AT2G44940.1 66.667 57 19 0 8 64 100 156 2.33e-18 80.9
Msa1456040 AT5G21960.1 57.377 61 26 0 7 67 6 66 2.51e-18 79.7
Msa1456040 AT5G11590.1 66.667 57 19 0 8 64 51 107 2.75e-18 79.7
Msa1456040 AT5G47220.1 53.333 75 34 1 6 79 115 189 2.77e-18 80.1
Msa1456040 AT1G28160.1 53.425 73 34 0 7 79 38 110 2.95e-18 80.1
Msa1456040 AT4G17500.1 60.938 64 24 1 6 68 146 209 3.71e-18 80.1
Msa1456040 AT3G16770.1 57.895 57 24 0 8 64 79 135 3.81e-18 79.7
Msa1456040 AT3G57600.1 44.681 94 46 2 7 94 27 120 4.49e-18 80.1
Msa1456040 AT4G28140.1 61.404 57 22 0 8 64 143 199 5.04e-18 80.1
Msa1456040 AT4G23750.2 50.000 66 33 0 5 70 119 184 1.15e-17 79.7
Msa1456040 AT4G23750.1 50.000 66 33 0 5 70 119 184 1.15e-17 79.7
Msa1456040 AT2G25820.1 64.912 57 20 0 8 64 26 82 1.33e-17 77.8
Msa1456040 AT5G25810.1 63.158 57 21 0 8 64 36 92 1.47e-17 77.4
Msa1456040 AT3G61630.1 62.069 58 22 0 6 63 103 160 1.63e-17 79.0
Msa1456040 AT5G53290.1 60.345 58 23 0 6 63 123 180 2.57e-17 79.0
Msa1456040 AT3G60490.1 63.158 57 21 0 8 64 71 127 3.58e-17 77.4
Msa1456040 AT1G75490.1 57.895 57 24 0 8 64 42 98 4.55e-17 75.9
Msa1456040 AT4G36900.1 56.140 57 25 0 8 64 30 86 5.38e-17 75.5
Msa1456040 AT1G01250.1 59.649 57 23 0 8 64 45 101 6.21e-17 75.5
Msa1456040 AT5G18450.1 39.048 105 64 0 8 112 34 138 7.59e-17 77.0
Msa1456040 AT5G47230.1 57.377 61 25 1 5 64 153 213 9.11e-17 76.6
Msa1456040 AT2G23340.1 56.140 57 25 0 8 64 28 84 9.38e-17 74.3
Msa1456040 AT3G23230.1 54.167 72 30 2 5 73 17 88 1.14e-16 73.2
Msa1456040 AT5G67190.1 44.872 78 43 0 8 85 21 98 1.45e-16 74.3
Msa1456040 AT1G22985.1 52.000 75 32 2 5 76 72 145 1.67e-16 73.6
Msa1456040 AT4G25490.1 66.071 56 19 0 8 63 48 103 1.70e-16 74.7
Msa1456040 AT2G46310.1 59.649 57 23 0 7 63 98 154 1.92e-16 75.9
Msa1456040 AT1G46768.3 54.386 57 26 0 8 64 31 87 2.23e-16 72.8
Msa1456040 AT5G51190.1 44.706 85 46 1 5 88 69 153 2.23e-16 74.3
Msa1456040 AT1G46768.1 54.386 57 26 0 8 64 31 87 2.34e-16 72.8
Msa1456040 AT1G46768.2 54.386 57 26 0 8 64 31 87 2.34e-16 72.8
Msa1456040 AT2G40350.2 53.333 60 28 0 8 67 74 133 2.37e-16 73.2
Msa1456040 AT2G40350.1 53.333 60 28 0 8 67 67 126 2.56e-16 72.8
Msa1456040 AT4G31060.1 39.831 118 63 3 8 117 27 144 2.79e-16 73.6
Msa1456040 AT1G68550.1 34.615 130 74 3 2 127 107 229 5.27e-16 74.7
Msa1456040 AT1G68550.2 34.615 130 74 3 2 127 107 229 5.27e-16 74.7
Msa1456040 AT2G44840.1 53.030 66 27 2 4 65 85 150 5.35e-16 73.6
Msa1456040 AT5G43410.1 52.239 67 31 1 7 72 14 80 6.39e-16 71.2
Msa1456040 AT4G25470.1 64.286 56 20 0 8 63 51 106 7.72e-16 72.8
Msa1456040 AT4G17490.1 55.738 61 26 1 5 64 134 194 8.54e-16 73.9
Msa1456040 AT5G07580.1 58.333 60 24 1 8 66 110 169 1.20e-15 72.4
Msa1456040 AT3G50260.1 50.877 57 28 0 8 64 21 77 1.97e-15 70.5
Msa1456040 AT4G25480.1 62.500 56 21 0 8 63 51 106 2.36e-15 71.6
Msa1456040 AT5G61600.1 50.725 69 33 1 8 75 88 156 3.63e-15 71.6
Msa1456040 AT1G71130.1 52.239 67 27 1 2 63 73 139 4.91e-15 69.7
Msa1456040 AT1G22810.1 31.655 139 67 4 5 139 11 125 1.20e-14 68.2
Msa1456040 AT5G64750.1 59.259 54 22 0 13 66 190 243 1.27e-14 71.2
Msa1456040 AT5G51990.1 60.714 56 22 0 8 63 54 109 2.10e-14 69.3
Msa1456040 AT2G36450.1 60.345 58 22 1 8 64 15 72 2.89e-14 68.2
Msa1456040 AT5G07310.1 43.333 90 51 0 8 97 92 181 6.41e-14 68.6
Msa1456040 AT2G38340.1 55.072 69 23 1 4 64 66 134 6.52e-14 68.2
Msa1456040 AT1G53170.1 51.250 80 39 0 7 86 30 109 8.47e-14 67.0
Msa1456040 AT3G23240.1 51.613 62 29 1 3 63 77 138 8.51e-14 67.4
Msa1456040 AT1G43160.1 62.121 66 24 1 1 66 55 119 9.66e-14 67.0
Msa1456040 AT1G71520.1 47.761 67 27 2 5 65 11 75 1.72e-13 65.1
Msa1456040 AT3G14230.2 43.966 116 59 2 5 119 121 231 2.48e-13 67.8
Msa1456040 AT3G14230.1 43.966 116 59 2 5 119 125 235 2.58e-13 67.8
Msa1456040 AT3G14230.3 43.966 116 59 2 5 119 120 230 2.62e-13 67.4
Msa1456040 AT2G31230.1 50.820 61 29 1 5 64 83 143 3.22e-13 66.2
Msa1456040 AT1G77200.1 61.905 63 24 0 2 64 37 99 3.36e-13 66.2
Msa1456040 AT4G34410.1 62.687 67 25 0 8 74 136 202 3.42e-13 66.6
Msa1456040 AT3G25890.1 71.053 38 11 0 10 47 133 170 3.76e-13 67.0
Msa1456040 AT3G25890.2 71.053 38 11 0 10 47 133 170 3.76e-13 67.0
Msa1456040 AT4G18450.1 55.000 60 25 2 6 63 108 167 5.38e-13 66.2
Msa1456040 AT2G40220.1 68.421 57 18 0 7 63 54 110 1.03e-12 65.9
Msa1456040 AT1G33760.1 39.098 133 65 3 5 130 17 140 1.39e-12 63.5
Msa1456040 AT1G77640.1 61.017 59 23 0 6 64 41 99 1.81e-12 64.3
Msa1456040 AT5G50080.1 63.333 60 22 0 5 64 74 133 2.49e-12 63.5
Msa1456040 AT5G50080.2 63.333 60 22 0 5 64 83 142 2.57e-12 63.5
Msa1456040 AT1G53910.1 61.667 60 23 0 5 64 122 181 4.08e-12 63.9
Msa1456040 AT1G53910.2 61.667 60 23 0 5 64 122 181 4.08e-12 63.9
Msa1456040 AT1G53910.3 61.667 60 23 0 5 64 120 179 4.17e-12 63.9
Msa1456040 AT1G63030.2 51.786 56 27 0 8 63 30 85 6.51e-12 61.6
Msa1456040 AT1G63030.1 51.786 56 27 0 8 63 30 85 6.51e-12 61.6
Msa1456040 AT1G64380.1 50.602 83 37 1 1 79 129 211 3.36e-11 61.2
Msa1456040 AT1G12610.1 50.000 56 28 0 8 63 30 85 4.69e-11 59.7
Msa1456040 AT1G44830.1 61.667 60 22 1 6 64 33 92 6.98e-11 59.3

Find 54 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTATTGTGCTTGTTTCT+TGG 0.238089 tig0036842:-528 Msa1456040:three_prime_UTR
TAGACTGATGACAACATAAT+TGG 0.262378 tig0036842:+556 None:intergenic
ATAGAGGAATTGCTTCATTA+TGG 0.265059 tig0036842:-803 Msa1456040:CDS
TCATAGTAGTATCAATTTCT+TGG 0.285328 tig0036842:+936 None:intergenic
ATCAATATTATTAATGCTTT+AGG 0.288196 tig0036842:-664 Msa1456040:three_prime_UTR
ATTTAGCTAGTGTCCTCTTT+TGG 0.310804 tig0036842:-640 Msa1456040:three_prime_UTR
CAATATGGGGTGGCGAATTT+CGG 0.312981 tig0036842:+1479 None:intergenic
TGAGGCTGTTGCAGAGATAT+TGG 0.340722 tig0036842:+1016 None:intergenic
AAAAGAATCAGAGGGAAATT+GGG 0.351339 tig0036842:-900 Msa1456040:CDS
TCTCCACCTCCTCCTCCTCT+TGG 0.358034 tig0036842:-1630 Msa1456040:five_prime_UTR
GACAAAGGCATTGGGGCTCT+TGG 0.365987 tig0036842:-1506 Msa1456040:CDS
AGGTGGAGAAGGAGAGGTGA+TGG 0.372177 tig0036842:+1644 None:intergenic
TAGAGGAATTGCTTCATTAT+GGG 0.393664 tig0036842:-802 Msa1456040:CDS
TGTTGTGGTCTAGCCATGTT+AGG 0.402461 tig0036842:+1546 None:intergenic
AGGCGTCCGACAAAGGCATT+GGG 0.410359 tig0036842:-1514 Msa1456040:CDS
ACAAAGGCATTGGGGCTCTT+GGG 0.427788 tig0036842:-1505 Msa1456040:CDS
TGTGACACATTGGGGTTGTA+AGG 0.432124 tig0036842:+1121 None:intergenic
TAATAACAGCATTGTCCAAT+GGG 0.444241 tig0036842:+594 None:intergenic
AAACCAAGAGGAGGAGGAGG+TGG 0.447327 tig0036842:+1627 None:intergenic
GGTGGAGAAGGAGAGGTGAT+GGG 0.470985 tig0036842:+1645 None:intergenic
GAGGCGTCCGACAAAGGCAT+TGG 0.472374 tig0036842:-1515 Msa1456040:CDS
AGAGGAGGAGGAGGTGGAGA+AGG 0.474990 tig0036842:+1633 None:intergenic
AGGAGGAGGTGGAGAAGGAG+AGG 0.476502 tig0036842:+1638 None:intergenic
AAGAGCCCCAATGCCTTTGT+CGG 0.476653 tig0036842:+1508 None:intergenic
CAAGACTAATGTGTGGTACA+AGG 0.476857 tig0036842:-1159 Msa1456040:CDS
TTTCATGGGAACATTGTTTG+TGG 0.482813 tig0036842:+964 None:intergenic
GGGTTTCAAGAAAGTTAAAG+TGG 0.487028 tig0036842:-879 Msa1456040:CDS
GATGATGATTGTGACACATT+GGG 0.489977 tig0036842:+1112 None:intergenic
TCACATTGAACAAATGATAG+AGG 0.493691 tig0036842:-819 Msa1456040:CDS
AATGCCTTTGTCGGACGCCT+CGG 0.517800 tig0036842:+1517 None:intergenic
GGTGTCTAGACTTACAATAT+GGG 0.524604 tig0036842:+1465 None:intergenic
CTTTGTGAAGATTGTTTCTG+AGG 0.530721 tig0036842:+998 None:intergenic
GTTGTGAAACCAAGAGGAGG+AGG 0.541398 tig0036842:+1621 None:intergenic
AAAGAATCAGAGGGAAATTG+GGG 0.542505 tig0036842:-899 Msa1456040:CDS
TCAATGTGATCTTCTTCAAG+AGG 0.543478 tig0036842:+833 None:intergenic
GTGACACATTGGGGTTGTAA+GGG 0.555765 tig0036842:+1122 None:intergenic
ATAATAACAGCATTGTCCAA+TGG 0.557413 tig0036842:+593 None:intergenic
GTGTTTCACTTTCATGTCTG+TGG 0.565586 tig0036842:+752 None:intergenic
TTTCACTTTCATGTCTGTGG+TGG 0.585069 tig0036842:+755 None:intergenic
GTGAAACCAAGAGGAGGAGG+AGG 0.586007 tig0036842:+1624 None:intergenic
AGATGATGATTGTGACACAT+TGG 0.587146 tig0036842:+1111 None:intergenic
GTTACCGAGGCGTCCGACAA+AGG 0.593207 tig0036842:-1521 Msa1456040:CDS
TACTACTATGAAACATGAAG+AGG 0.601855 tig0036842:-924 Msa1456040:CDS
ACGCCTCGGTAACGTTGTTG+TGG 0.609578 tig0036842:+1531 None:intergenic
TAAACTGCATAGATGCTACA+TGG 0.617860 tig0036842:-1059 Msa1456040:CDS
TTTGTTGTGAAACCAAGAGG+AGG 0.619517 tig0036842:+1618 None:intergenic
AAGACTAATGTGTGGTACAA+GGG 0.623635 tig0036842:-1158 Msa1456040:CDS
ATGATGATTGTGACACATTG+GGG 0.665424 tig0036842:+1113 None:intergenic
TGGCTTCATTGCAAATCACA+AGG 0.668334 tig0036842:-1039 Msa1456040:CDS
GTGTCTAGACTTACAATATG+GGG 0.673317 tig0036842:+1466 None:intergenic
TCTAGACTTACAATATGGGG+TGG 0.685523 tig0036842:+1469 None:intergenic
GGCGTCCGACAAAGGCATTG+GGG 0.701891 tig0036842:-1513 Msa1456040:CDS
AGACCACAACAACGTTACCG+AGG 0.703547 tig0036842:-1534 Msa1456040:CDS
GAAGCAGCAAGACTAATGTG+TGG 0.733704 tig0036842:-1166 Msa1456040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCAATATTATTAATGCTTT+AGG - tig0036842:1529-1548 Msa1456040:CDS 15.0%
!! ATCAATATTATTAATGCTTT+AGG - tig0036842:1529-1548 Msa1456040:CDS 15.0%
!!! TACATTTGTTTTTCCTAACA+TGG - tig0036842:634-653 Msa1456040:three_prime_UTR 25.0%
!!! AAGTTTTAACAAAATCACGA+TGG + tig0036842:752-771 None:intergenic 25.0%
! TCATAGTAGTATCAATTTCT+TGG + tig0036842:1260-1279 None:intergenic 25.0%
! GTCACTTAGATAAAAAATCT+AGG + tig0036842:1580-1599 None:intergenic 25.0%
!! TTATTATTGTGCTTGTTTCT+TGG - tig0036842:1665-1684 Msa1456040:five_prime_UTR 25.0%
!!! TACATTTGTTTTTCCTAACA+TGG - tig0036842:634-653 Msa1456040:three_prime_UTR 25.0%
!!! AAGTTTTAACAAAATCACGA+TGG + tig0036842:752-771 None:intergenic 25.0%
! TCATAGTAGTATCAATTTCT+TGG + tig0036842:1260-1279 None:intergenic 25.0%
! GTCACTTAGATAAAAAATCT+AGG + tig0036842:1580-1599 None:intergenic 25.0%
!! TTATTATTGTGCTTGTTTCT+TGG - tig0036842:1665-1684 Msa1456040:five_prime_UTR 25.0%
!! AATTTTGTTGTGAAACCAAG+AGG + tig0036842:581-600 None:intergenic 30.0%
!!! CTTTTCAGAAAGTGTTTTTG+AGG + tig0036842:612-631 None:intergenic 30.0%
! ACAGTTACTACTATCTTTTG+AGG + tig0036842:826-845 None:intergenic 30.0%
TCATTATGTGCAGAAAAACT+AGG - tig0036842:953-972 Msa1456040:CDS 30.0%
!!! ATTTCTTGGCTACTTTTCAT+GGG + tig0036842:1246-1265 None:intergenic 30.0%
!!! AATTTCTTGGCTACTTTTCA+TGG + tig0036842:1247-1266 None:intergenic 30.0%
TACTACTATGAAACATGAAG+AGG - tig0036842:1269-1288 Msa1456040:intron 30.0%
AAAAAGAATCAGAGGGAAAT+TGG - tig0036842:1292-1311 Msa1456040:intron 30.0%
AAAAGAATCAGAGGGAAATT+GGG - tig0036842:1293-1312 Msa1456040:intron 30.0%
TCACATTGAACAAATGATAG+AGG - tig0036842:1374-1393 Msa1456040:intron 30.0%
ATAGAGGAATTGCTTCATTA+TGG - tig0036842:1390-1409 Msa1456040:intron 30.0%
TAGAGGAATTGCTTCATTAT+GGG - tig0036842:1391-1410 Msa1456040:intron 30.0%
! AAAAAATCTAGGACCAAAAG+AGG + tig0036842:1569-1588 None:intergenic 30.0%
! TTTTTATCTAAGTGACCCAT+TGG - tig0036842:1584-1603 Msa1456040:five_prime_UTR 30.0%
TAATAACAGCATTGTCCAAT+GGG + tig0036842:1602-1621 None:intergenic 30.0%
ATAATAACAGCATTGTCCAA+TGG + tig0036842:1603-1622 None:intergenic 30.0%
TAGACTGATGACAACATAAT+TGG + tig0036842:1640-1659 None:intergenic 30.0%
!! AATTTTGTTGTGAAACCAAG+AGG + tig0036842:581-600 None:intergenic 30.0%
!!! CTTTTCAGAAAGTGTTTTTG+AGG + tig0036842:612-631 None:intergenic 30.0%
! ACAGTTACTACTATCTTTTG+AGG + tig0036842:826-845 None:intergenic 30.0%
TCATTATGTGCAGAAAAACT+AGG - tig0036842:953-972 Msa1456040:CDS 30.0%
!!! ATTTCTTGGCTACTTTTCAT+GGG + tig0036842:1246-1265 None:intergenic 30.0%
!!! AATTTCTTGGCTACTTTTCA+TGG + tig0036842:1247-1266 None:intergenic 30.0%
TACTACTATGAAACATGAAG+AGG - tig0036842:1269-1288 Msa1456040:intron 30.0%
AAAAAGAATCAGAGGGAAAT+TGG - tig0036842:1292-1311 Msa1456040:intron 30.0%
AAAAGAATCAGAGGGAAATT+GGG - tig0036842:1293-1312 Msa1456040:intron 30.0%
TCACATTGAACAAATGATAG+AGG - tig0036842:1374-1393 Msa1456040:intron 30.0%
ATAGAGGAATTGCTTCATTA+TGG - tig0036842:1390-1409 Msa1456040:intron 30.0%
TAGAGGAATTGCTTCATTAT+GGG - tig0036842:1391-1410 Msa1456040:intron 30.0%
! AAAAAATCTAGGACCAAAAG+AGG + tig0036842:1569-1588 None:intergenic 30.0%
! TTTTTATCTAAGTGACCCAT+TGG - tig0036842:1584-1603 Msa1456040:five_prime_UTR 30.0%
TAATAACAGCATTGTCCAAT+GGG + tig0036842:1602-1621 None:intergenic 30.0%
ATAATAACAGCATTGTCCAA+TGG + tig0036842:1603-1622 None:intergenic 30.0%
TAGACTGATGACAACATAAT+TGG + tig0036842:1640-1659 None:intergenic 30.0%
GTGTCTAGACTTACAATATG+GGG + tig0036842:730-749 None:intergenic 35.0%
GGTGTCTAGACTTACAATAT+GGG + tig0036842:731-750 None:intergenic 35.0%
TGGTGTCTAGACTTACAATA+TGG + tig0036842:732-751 None:intergenic 35.0%
!!! ATCTTTTGAGGCTATGAGTT+TGG + tig0036842:814-833 None:intergenic 35.0%
TGTGCAGAAAAACTAGGATA+TGG - tig0036842:959-978 Msa1456040:CDS 35.0%
AGAAAAACTAGGATATGGCT+TGG - tig0036842:964-983 Msa1456040:CDS 35.0%
AAGACTAATGTGTGGTACAA+GGG - tig0036842:1035-1054 Msa1456040:CDS 35.0%
ATGATGATTGTGACACATTG+GGG + tig0036842:1083-1102 None:intergenic 35.0%
GATGATGATTGTGACACATT+GGG + tig0036842:1084-1103 None:intergenic 35.0%
AGATGATGATTGTGACACAT+TGG + tig0036842:1085-1104 None:intergenic 35.0%
TAAACTGCATAGATGCTACA+TGG - tig0036842:1134-1153 Msa1456040:CDS 35.0%
!! CTTTGTGAAGATTGTTTCTG+AGG + tig0036842:1198-1217 None:intergenic 35.0%
TTTCATGGGAACATTGTTTG+TGG + tig0036842:1232-1251 None:intergenic 35.0%
TGAAGAGGAAAAAGAATCAG+AGG - tig0036842:1284-1303 Msa1456040:intron 35.0%
GAAGAGGAAAAAGAATCAGA+GGG - tig0036842:1285-1304 Msa1456040:intron 35.0%
AAAGAATCAGAGGGAAATTG+GGG - tig0036842:1294-1313 Msa1456040:intron 35.0%
GGGTTTCAAGAAAGTTAAAG+TGG - tig0036842:1314-1333 Msa1456040:intron 35.0%
TCAATGTGATCTTCTTCAAG+AGG + tig0036842:1363-1382 None:intergenic 35.0%
! ATTTAGCTAGTGTCCTCTTT+TGG - tig0036842:1553-1572 Msa1456040:exon 35.0%
GTGTCTAGACTTACAATATG+GGG + tig0036842:730-749 None:intergenic 35.0%
GGTGTCTAGACTTACAATAT+GGG + tig0036842:731-750 None:intergenic 35.0%
TGGTGTCTAGACTTACAATA+TGG + tig0036842:732-751 None:intergenic 35.0%
!!! ATCTTTTGAGGCTATGAGTT+TGG + tig0036842:814-833 None:intergenic 35.0%
TGTGCAGAAAAACTAGGATA+TGG - tig0036842:959-978 Msa1456040:CDS 35.0%
AGAAAAACTAGGATATGGCT+TGG - tig0036842:964-983 Msa1456040:CDS 35.0%
AAGACTAATGTGTGGTACAA+GGG - tig0036842:1035-1054 Msa1456040:CDS 35.0%
ATGATGATTGTGACACATTG+GGG + tig0036842:1083-1102 None:intergenic 35.0%
GATGATGATTGTGACACATT+GGG + tig0036842:1084-1103 None:intergenic 35.0%
AGATGATGATTGTGACACAT+TGG + tig0036842:1085-1104 None:intergenic 35.0%
TAAACTGCATAGATGCTACA+TGG - tig0036842:1134-1153 Msa1456040:CDS 35.0%
!! CTTTGTGAAGATTGTTTCTG+AGG + tig0036842:1198-1217 None:intergenic 35.0%
TTTCATGGGAACATTGTTTG+TGG + tig0036842:1232-1251 None:intergenic 35.0%
TGAAGAGGAAAAAGAATCAG+AGG - tig0036842:1284-1303 Msa1456040:intron 35.0%
GAAGAGGAAAAAGAATCAGA+GGG - tig0036842:1285-1304 Msa1456040:intron 35.0%
AAAGAATCAGAGGGAAATTG+GGG - tig0036842:1294-1313 Msa1456040:intron 35.0%
GGGTTTCAAGAAAGTTAAAG+TGG - tig0036842:1314-1333 Msa1456040:intron 35.0%
TCAATGTGATCTTCTTCAAG+AGG + tig0036842:1363-1382 None:intergenic 35.0%
! ATTTAGCTAGTGTCCTCTTT+TGG - tig0036842:1553-1572 Msa1456040:exon 35.0%
!!! GTGATGGGTTTTTGTAGTTG+GGG + tig0036842:536-555 None:intergenic 40.0%
!!! GGTGATGGGTTTTTGTAGTT+GGG + tig0036842:537-556 None:intergenic 40.0%
!!! AGGTGATGGGTTTTTGTAGT+TGG + tig0036842:538-557 None:intergenic 40.0%
! TTTGTTGTGAAACCAAGAGG+AGG + tig0036842:578-597 None:intergenic 40.0%
TCTAGACTTACAATATGGGG+TGG + tig0036842:727-746 None:intergenic 40.0%
!!! TGGTACTTTTGAAACTGCAG+AGG - tig0036842:984-1003 Msa1456040:CDS 40.0%
CAAGACTAATGTGTGGTACA+AGG - tig0036842:1034-1053 Msa1456040:CDS 40.0%
TGGCTTCATTGCAAATCACA+AGG - tig0036842:1154-1173 Msa1456040:CDS 40.0%
TTTCACTTTCATGTCTGTGG+TGG + tig0036842:1441-1460 None:intergenic 40.0%
GTGTTTCACTTTCATGTCTG+TGG + tig0036842:1444-1463 None:intergenic 40.0%
!!! GTGATGGGTTTTTGTAGTTG+GGG + tig0036842:536-555 None:intergenic 40.0%
!!! GGTGATGGGTTTTTGTAGTT+GGG + tig0036842:537-556 None:intergenic 40.0%
!!! AGGTGATGGGTTTTTGTAGT+TGG + tig0036842:538-557 None:intergenic 40.0%
! TTTGTTGTGAAACCAAGAGG+AGG + tig0036842:578-597 None:intergenic 40.0%
TCTAGACTTACAATATGGGG+TGG + tig0036842:727-746 None:intergenic 40.0%
!!! TGGTACTTTTGAAACTGCAG+AGG - tig0036842:984-1003 Msa1456040:CDS 40.0%
CAAGACTAATGTGTGGTACA+AGG - tig0036842:1034-1053 Msa1456040:CDS 40.0%
TGGCTTCATTGCAAATCACA+AGG - tig0036842:1154-1173 Msa1456040:CDS 40.0%
TTTCACTTTCATGTCTGTGG+TGG + tig0036842:1441-1460 None:intergenic 40.0%
GTGTTTCACTTTCATGTCTG+TGG + tig0036842:1444-1463 None:intergenic 40.0%
TGTTGTGGTCTAGCCATGTT+AGG + tig0036842:650-669 None:intergenic 45.0%
CAATATGGGGTGGCGAATTT+CGG + tig0036842:717-736 None:intergenic 45.0%
CTATGAGTTTGGCAGGATCA+CGG + tig0036842:803-822 None:intergenic 45.0%
! TTTGAGGCTATGAGTTTGGC+AGG + tig0036842:810-829 None:intergenic 45.0%
GAAGCAGCAAGACTAATGTG+TGG - tig0036842:1027-1046 Msa1456040:CDS 45.0%
GTGACACATTGGGGTTGTAA+GGG + tig0036842:1074-1093 None:intergenic 45.0%
TGTGACACATTGGGGTTGTA+AGG + tig0036842:1075-1094 None:intergenic 45.0%
TGAGGCTGTTGCAGAGATAT+TGG + tig0036842:1180-1199 None:intergenic 45.0%
TGTTGTGGTCTAGCCATGTT+AGG + tig0036842:650-669 None:intergenic 45.0%
CAATATGGGGTGGCGAATTT+CGG + tig0036842:717-736 None:intergenic 45.0%
CTATGAGTTTGGCAGGATCA+CGG + tig0036842:803-822 None:intergenic 45.0%
! TTTGAGGCTATGAGTTTGGC+AGG + tig0036842:810-829 None:intergenic 45.0%
GAAGCAGCAAGACTAATGTG+TGG - tig0036842:1027-1046 Msa1456040:CDS 45.0%
GTGACACATTGGGGTTGTAA+GGG + tig0036842:1074-1093 None:intergenic 45.0%
TGTGACACATTGGGGTTGTA+AGG + tig0036842:1075-1094 None:intergenic 45.0%
TGAGGCTGTTGCAGAGATAT+TGG + tig0036842:1180-1199 None:intergenic 45.0%
GTTGTGAAACCAAGAGGAGG+AGG + tig0036842:575-594 None:intergenic 50.0%
AGACCACAACAACGTTACCG+AGG - tig0036842:659-678 Msa1456040:three_prime_UTR 50.0%
AAGAGCCCCAATGCCTTTGT+CGG + tig0036842:688-707 None:intergenic 50.0%
!! ACAAAGGCATTGGGGCTCTT+GGG - tig0036842:688-707 Msa1456040:three_prime_UTR 50.0%
GTTGTGAAACCAAGAGGAGG+AGG + tig0036842:575-594 None:intergenic 50.0%
AGACCACAACAACGTTACCG+AGG - tig0036842:659-678 Msa1456040:three_prime_UTR 50.0%
AAGAGCCCCAATGCCTTTGT+CGG + tig0036842:688-707 None:intergenic 50.0%
!! ACAAAGGCATTGGGGCTCTT+GGG - tig0036842:688-707 Msa1456040:three_prime_UTR 50.0%
GGTGGAGAAGGAGAGGTGAT+GGG + tig0036842:551-570 None:intergenic 55.0%
AGGTGGAGAAGGAGAGGTGA+TGG + tig0036842:552-571 None:intergenic 55.0%
AAACCAAGAGGAGGAGGAGG+TGG + tig0036842:569-588 None:intergenic 55.0%
GTGAAACCAAGAGGAGGAGG+AGG + tig0036842:572-591 None:intergenic 55.0%
ACGCCTCGGTAACGTTGTTG+TGG + tig0036842:665-684 None:intergenic 55.0%
AATGCCTTTGTCGGACGCCT+CGG + tig0036842:679-698 None:intergenic 55.0%
!! AGGCGTCCGACAAAGGCATT+GGG - tig0036842:679-698 Msa1456040:three_prime_UTR 55.0%
!! GACAAAGGCATTGGGGCTCT+TGG - tig0036842:687-706 Msa1456040:three_prime_UTR 55.0%
GGTGGAGAAGGAGAGGTGAT+GGG + tig0036842:551-570 None:intergenic 55.0%
AGGTGGAGAAGGAGAGGTGA+TGG + tig0036842:552-571 None:intergenic 55.0%
AAACCAAGAGGAGGAGGAGG+TGG + tig0036842:569-588 None:intergenic 55.0%
GTGAAACCAAGAGGAGGAGG+AGG + tig0036842:572-591 None:intergenic 55.0%
ACGCCTCGGTAACGTTGTTG+TGG + tig0036842:665-684 None:intergenic 55.0%
AATGCCTTTGTCGGACGCCT+CGG + tig0036842:679-698 None:intergenic 55.0%
!! AGGCGTCCGACAAAGGCATT+GGG - tig0036842:679-698 Msa1456040:three_prime_UTR 55.0%
!! GACAAAGGCATTGGGGCTCT+TGG - tig0036842:687-706 Msa1456040:three_prime_UTR 55.0%
AGGAGGAGGTGGAGAAGGAG+AGG + tig0036842:558-577 None:intergenic 60.0%
AGAGGAGGAGGAGGTGGAGA+AGG + tig0036842:563-582 None:intergenic 60.0%
TCTCCACCTCCTCCTCCTCT+TGG - tig0036842:563-582 Msa1456040:three_prime_UTR 60.0%
! GTTACCGAGGCGTCCGACAA+AGG - tig0036842:672-691 Msa1456040:three_prime_UTR 60.0%
! GAGGCGTCCGACAAAGGCAT+TGG - tig0036842:678-697 Msa1456040:three_prime_UTR 60.0%
!! GGCGTCCGACAAAGGCATTG+GGG - tig0036842:680-699 Msa1456040:three_prime_UTR 60.0%
AGGAGGAGGTGGAGAAGGAG+AGG + tig0036842:558-577 None:intergenic 60.0%
AGAGGAGGAGGAGGTGGAGA+AGG + tig0036842:563-582 None:intergenic 60.0%
TCTCCACCTCCTCCTCCTCT+TGG - tig0036842:563-582 Msa1456040:three_prime_UTR 60.0%
! GTTACCGAGGCGTCCGACAA+AGG - tig0036842:672-691 Msa1456040:three_prime_UTR 60.0%
! GAGGCGTCCGACAAAGGCAT+TGG - tig0036842:678-697 Msa1456040:three_prime_UTR 60.0%
!! GGCGTCCGACAAAGGCATTG+GGG - tig0036842:680-699 Msa1456040:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
tig0036842 gene 515 1700 515 ID=Msa1456040;Name=Msa1456040
tig0036842 mRNA 515 1700 515 ID=Msa1456040-mRNA-1;Parent=Msa1456040;Name=Msa1456040-mRNA-1;_AED=0.00;_eAED=0.00;_QI=138|1|1|1|1|1|2|248|189
tig0036842 exon 515 1249 515 ID=Msa1456040-mRNA-1:exon:20539;Parent=Msa1456040-mRNA-1
tig0036842 exon 1480 1700 1480 ID=Msa1456040-mRNA-1:exon:20538;Parent=Msa1456040-mRNA-1
tig0036842 five_prime_UTR 1563 1700 1563 ID=Msa1456040-mRNA-1:five_prime_utr;Parent=Msa1456040-mRNA-1
tig0036842 CDS 1480 1562 1480 ID=Msa1456040-mRNA-1:cds;Parent=Msa1456040-mRNA-1
tig0036842 CDS 763 1249 763 ID=Msa1456040-mRNA-1:cds;Parent=Msa1456040-mRNA-1
tig0036842 three_prime_UTR 515 762 515 ID=Msa1456040-mRNA-1:three_prime_utr;Parent=Msa1456040-mRNA-1
Gene Sequence

>Msa1456040

ATGGCTAGACCACAACAACGTTACCGAGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCCATATTAAAAACTAGGATATGGCTTGGTACTTTTGAAACTGCAGAGGATGCAGCTAGAGCATACGATGAAGCAGCAAGACTAATGTGTGGTACAAGGGCAAGAACAAATTTCCCTTACAACCCCAATGTGTCACAATCATCATCTTCTAAGCTTCTCTCAGCAACTTTAACTGCTAAACTGCATAGATGCTACATGGCTTCATTGCAAATCACAAGGCCAATATCTCTGCAACAGCCTCAGAAACAATCTTCACAAAGTGTAAACATATCCACAAACAATGTTCCCATGAAAAGTAGCCAAGAAATTGATACTACTATGAAACATGAAGAGGAAAAAGAATCAGAGGGAAATTGGGGTTTCAAGAAAGTTAAAGTGGAAAATTCTCAGCAATTTATTAAGCCTCTTGAAGAAGATCACATTGAACAAATGATAGAGGAATTGCTTCATTATGGGTCTATTGAGCTTTGTTCTGTTTTTCCACCACAGACATGA
Protein sequence

>Msa1456040

MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNVSQSSSSKLLSATLTAKLHRCYMASLQITRPISLQQPQKQSSQSVNISTNNVPMKSSQEIDTTMKHEEEKESEGNWGFKKVKVENSQQFIKPLEEDHIEQMIEELLHYGSIELCSVFPPQT*