Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0594710 | KEH42347.1 | 83.846 | 130 | 5 | 1 | 2 | 115 | 7 | 136 | 2.65e-66 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047280 | Msa0594710 | 0.809939 | 1.476903e-50 | -8.615850e-47 |
| Msa0049390 | Msa0594710 | 0.808909 | 2.456830e-50 | -8.615850e-47 |
| Msa0057590 | Msa0594710 | 0.803125 | 4.046080e-49 | -8.615850e-47 |
| Msa0057710 | Msa0594710 | 0.800443 | 1.437510e-48 | -8.615850e-47 |
| Msa0065010 | Msa0594710 | 0.816338 | 5.821680e-52 | -8.615850e-47 |
| Msa0070170 | Msa0594710 | 0.824876 | 6.362904e-54 | -8.615850e-47 |
| Msa0126770 | Msa0594710 | 0.802941 | 4.417184e-49 | -8.615850e-47 |
| Msa0139990 | Msa0594710 | 0.804784 | 1.829565e-49 | -8.615850e-47 |
| Msa0147980 | Msa0594710 | 0.802399 | 5.713877e-49 | -8.615850e-47 |
| Msa0164370 | Msa0594710 | 0.816172 | 6.341288e-52 | -8.615850e-47 |
| Msa0171850 | Msa0594710 | 0.803581 | 3.255728e-49 | -8.615850e-47 |
| Msa0226460 | Msa0594710 | 0.812949 | 3.277546e-51 | -8.615850e-47 |
| Msa0414020 | Msa0594710 | 0.821028 | 5.019423e-53 | -8.615850e-47 |
| Msa0431770 | Msa0594710 | 0.818587 | 1.813073e-52 | -8.615850e-47 |
| Msa0478580 | Msa0594710 | 0.805246 | 1.464230e-49 | -8.615850e-47 |
| Msa0259210 | Msa0594710 | 0.810284 | 1.244501e-50 | -8.615850e-47 |
| Msa0296920 | Msa0594710 | 0.803435 | 3.491275e-49 | -8.615850e-47 |
| Msa0337510 | Msa0594710 | 0.821966 | 3.048704e-53 | -8.615850e-47 |
| Msa0517640 | Msa0594710 | 0.804133 | 2.500958e-49 | -8.615850e-47 |
| Msa0534050 | Msa0594710 | 0.826147 | 3.182389e-54 | -8.615850e-47 |
| Msa0535000 | Msa0594710 | 0.912914 | 1.127393e-83 | -8.615850e-47 |
| Msa0546570 | Msa0594710 | 0.802339 | 5.880585e-49 | -8.615850e-47 |
| Msa0547990 | Msa0594710 | 0.810365 | 1.195036e-50 | -8.615850e-47 |
| Msa0576730 | Msa0594710 | 0.803471 | 3.432116e-49 | -8.615850e-47 |
| Msa0580180 | Msa0594710 | 0.801962 | 7.030338e-49 | -8.615850e-47 |
| Msa0581130 | Msa0594710 | 0.810587 | 1.070473e-50 | -8.615850e-47 |
| Msa0588220 | Msa0594710 | 0.804865 | 1.759704e-49 | -8.615850e-47 |
| Msa0594710 | Msa0609000 | 0.800692 | 1.279061e-48 | -8.615850e-47 |
| Msa0594710 | Msa0618930 | 0.804708 | 1.897593e-49 | -8.615850e-47 |
| Msa0594710 | Msa0619920 | 0.806441 | 8.213804e-50 | -8.615850e-47 |
| Msa0594710 | Msa0638350 | 0.818291 | 2.116187e-52 | -8.615850e-47 |
| Msa0594710 | Msa0642970 | 0.808760 | 2.643841e-50 | -8.615850e-47 |
| Msa0594710 | Msa0695130 | 0.805699 | 1.176824e-49 | -8.615850e-47 |
| Msa0594710 | Msa0792780 | 0.810512 | 1.111187e-50 | -8.615850e-47 |
| Msa0594710 | Msa0795660 | 0.801531 | 8.616725e-49 | -8.615850e-47 |
| Msa0594710 | Msa0818770 | 0.802345 | 5.864067e-49 | -8.615850e-47 |
| Msa0594710 | Msa0824640 | 0.808593 | 2.869589e-50 | -8.615850e-47 |
| Msa0594710 | Msa0864010 | 0.805388 | 1.367234e-49 | -8.615850e-47 |
| Msa0594710 | Msa0866400 | 0.803403 | 3.544629e-49 | -8.615850e-47 |
| Msa0594710 | Msa0869010 | 0.805130 | 1.548957e-49 | -8.615850e-47 |
| Msa0594710 | Msa0871780 | 0.800933 | 1.142165e-48 | -8.615850e-47 |
| Msa0594710 | Msa0888940 | 0.808033 | 3.777204e-50 | -8.615850e-47 |
| Msa0594710 | Msa0888990 | 0.800281 | 1.551520e-48 | -8.615850e-47 |
| Msa0594710 | Msa0898760 | 0.803103 | 4.089063e-49 | -8.615850e-47 |
| Msa0594710 | Msa0903780 | 0.800303 | 1.535155e-48 | -8.615850e-47 |
| Msa0594710 | Msa0928120 | 0.806180 | 9.322736e-50 | -8.615850e-47 |
| Msa0594710 | Msa0943170 | 0.827215 | 1.769503e-54 | -8.615850e-47 |
| Msa0594710 | Msa0944200 | 0.805051 | 1.608777e-49 | -8.615850e-47 |
| Msa0594710 | Msa0980940 | 0.810426 | 1.159558e-50 | -8.615850e-47 |
| Msa0594710 | Msa1025940 | 0.802324 | 5.920426e-49 | -8.615850e-47 |
| Msa0594710 | Msa1051600 | 0.800980 | 1.117422e-48 | -8.615850e-47 |
| Msa0594710 | Msa1071530 | 0.802776 | 4.778600e-49 | -8.615850e-47 |
| Msa0594710 | Msa1126850 | 0.808437 | 3.099174e-50 | -8.615850e-47 |
| Msa0594710 | Msa1131560 | 0.805054 | 1.606225e-49 | -8.615850e-47 |
| Msa0594710 | Msa1163540 | 0.819338 | 1.224208e-52 | -8.615850e-47 |
| Msa0594710 | Msa1165960 | 0.804220 | 2.398353e-49 | -8.615850e-47 |
| Msa0594710 | Msa1173900 | 0.808962 | 2.393351e-50 | -8.615850e-47 |
| Msa0594710 | Msa1202580 | 0.815309 | 9.878358e-52 | -8.615850e-47 |
| Msa0594710 | Msa1204830 | 0.806185 | 9.298933e-50 | -8.615850e-47 |
| Msa0594710 | Msa1206650 | 0.813049 | 3.116489e-51 | -8.615850e-47 |
| Msa0594710 | Msa1211830 | 0.803046 | 4.202257e-49 | -8.615850e-47 |
| Msa0594710 | Msa1253810 | 0.826543 | 2.561230e-54 | -8.615850e-47 |
| Msa0594710 | Msa1270420 | 0.805146 | 1.536868e-49 | -8.615850e-47 |
| Msa0594710 | Msa1279590 | 0.829588 | 4.733873e-55 | -8.615850e-47 |
| Msa0594710 | Msa1286610 | 0.801597 | 8.353726e-49 | -8.615850e-47 |
| Msa0594710 | Msa1289300 | 0.811580 | 6.521479e-51 | -8.615850e-47 |
| Msa0594710 | Msa1297600 | 0.813502 | 2.478448e-51 | -8.615850e-47 |
| Msa0594710 | Msa1323990 | 0.814284 | 1.666484e-51 | -8.615850e-47 |
| Msa0594710 | Msa1329450 | 0.806208 | 9.197587e-50 | -8.615850e-47 |
| Msa0594710 | Msa1369690 | 0.807934 | 3.965963e-50 | -8.615850e-47 |
| Msa0594710 | Msa1389850 | 0.800925 | 1.146322e-48 | -8.615850e-47 |
| Msa0594710 | Msa1437270 | 0.800007 | 1.763844e-48 | -8.615850e-47 |
| Msa0594710 | Msa1445940 | 0.807255 | 5.526196e-50 | -8.615850e-47 |
| Msa0594710 | Msa1465570 | 0.803754 | 2.997018e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0594710 | MtrunA17_Chr1g0182201 | 80.435 | 92 | 2 | 1 | 40 | 115 | 1 | 92 | 8.49e-45 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0594710 | AT1G33500.2 | 46.296 | 108 | 42 | 2 | 18 | 109 | 147 | 254 | 1.34e-22 | 89.0 |
| Msa0594710 | AT1G33500.3 | 46.296 | 108 | 42 | 2 | 18 | 109 | 147 | 254 | 1.34e-22 | 89.0 |
| Msa0594710 | AT1G33500.1 | 44.944 | 89 | 33 | 2 | 18 | 90 | 147 | 235 | 2.87e-14 | 67.0 |
Find 17 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCATAGACTGCAAGTATT+CGG | 0.336412 | 4_2:+22914349 | None:intergenic |
| GTAAAATACCAGGTTATCTA+TGG | 0.364353 | 4_2:+22915254 | None:intergenic |
| AACCGAATACTTGCAGTCTA+TGG | 0.365243 | 4_2:-22914351 | Msa0594710:CDS |
| GAACAACTTAATCACTGAGT+TGG | 0.468913 | 4_2:-22915157 | Msa0594710:CDS |
| TATGAAATCCAAGGTTCTCA+TGG | 0.508723 | 4_2:-22915100 | Msa0594710:CDS |
| GTTAATGTCCATGAGAACCT+TGG | 0.514632 | 4_2:+22915092 | None:intergenic |
| CAGTCTATGGAGAAACAAGT+AGG | 0.519458 | 4_2:-22914338 | Msa0594710:CDS |
| TGATATAACCGCTCTTGAAG+AGG | 0.585407 | 4_2:-22914408 | Msa0594710:CDS |
| TAACTGTGCCATAGATAACC+TGG | 0.597968 | 4_2:-22915262 | Msa0594710:intron |
| AGTCTATGGAGAAACAAGTA+GGG | 0.599025 | 4_2:-22914337 | Msa0594710:CDS |
| GATTCTTGTTATGAAATCCA+AGG | 0.599940 | 4_2:-22915109 | Msa0594710:CDS |
| AGTTGGATTCAGCTAAAGCA+AGG | 0.606877 | 4_2:-22915140 | Msa0594710:CDS |
| ATTATATTCCTCTTCAAGAG+CGG | 0.617481 | 4_2:+22914400 | None:intergenic |
| CAACTTATAAAATGTGCTTG+TGG | 0.646559 | 4_2:-22914091 | Msa0594710:CDS |
| TATAAAATGTGCTTGTGGTG+AGG | 0.649465 | 4_2:-22914086 | Msa0594710:CDS |
| GAAACAAGTAGGGAAACTCA+AGG | 0.667054 | 4_2:-22914327 | Msa0594710:intron |
| GGTTCTCATGGACATTAACA+AGG | 0.678444 | 4_2:-22915088 | Msa0594710:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCAATTTAGTTTCATAAAA+CGG | + | chr4_2:22914087-22914106 | None:intergenic | 15.0% |
| !!! | TATGTTAATATTGTTGTTTA+TGG | - | chr4_2:22914585-22914604 | Msa0594710:intron | 15.0% |
| !! | AAAGTAATTATCAACAAAAT+AGG | - | chr4_2:22915159-22915178 | Msa0594710:CDS | 15.0% |
| !!! | ATCAATTTAGTTTCATAAAA+CGG | + | chr4_2:22914087-22914106 | None:intergenic | 15.0% |
| !!! | TATGTTAATATTGTTGTTTA+TGG | - | chr4_2:22914585-22914604 | Msa0594710:intron | 15.0% |
| !! | AAAGTAATTATCAACAAAAT+AGG | - | chr4_2:22915159-22915178 | Msa0594710:CDS | 15.0% |
| !! | AAGTTTATTATACGAATGTT+TGG | + | chr4_2:22914112-22914131 | None:intergenic | 20.0% |
| !! | TATAATAAACTTATCTTGCA+GGG | - | chr4_2:22914120-22914139 | Msa0594710:intron | 20.0% |
| !! | TAATTTATCTTTGTCTGATA+GGG | - | chr4_2:22914230-22914249 | Msa0594710:intron | 20.0% |
| !! | TTATTCATTACTCAAGTTAT+TGG | - | chr4_2:22914387-22914406 | Msa0594710:CDS | 20.0% |
| !! | TAAAATAATTGTCTTCAGAA+TGG | - | chr4_2:22914537-22914556 | Msa0594710:intron | 20.0% |
| !! | AAAATAATTGTCTTCAGAAT+GGG | - | chr4_2:22914538-22914557 | Msa0594710:intron | 20.0% |
| !!! | TAACTTGTAAAATTTTCCAT+TGG | + | chr4_2:22915136-22915155 | None:intergenic | 20.0% |
| !! | AAGTTTATTATACGAATGTT+TGG | + | chr4_2:22914112-22914131 | None:intergenic | 20.0% |
| !! | TATAATAAACTTATCTTGCA+GGG | - | chr4_2:22914120-22914139 | Msa0594710:intron | 20.0% |
| !! | TAATTTATCTTTGTCTGATA+GGG | - | chr4_2:22914230-22914249 | Msa0594710:intron | 20.0% |
| !! | TTATTCATTACTCAAGTTAT+TGG | - | chr4_2:22914387-22914406 | Msa0594710:CDS | 20.0% |
| !! | TAAAATAATTGTCTTCAGAA+TGG | - | chr4_2:22914537-22914556 | Msa0594710:intron | 20.0% |
| !! | AAAATAATTGTCTTCAGAAT+GGG | - | chr4_2:22914538-22914557 | Msa0594710:intron | 20.0% |
| !!! | TAACTTGTAAAATTTTCCAT+TGG | + | chr4_2:22915136-22915155 | None:intergenic | 20.0% |
| ! | GTATAATAAACTTATCTTGC+AGG | - | chr4_2:22914119-22914138 | Msa0594710:intron | 25.0% |
| ! | GTAATTTATCTTTGTCTGAT+AGG | - | chr4_2:22914229-22914248 | Msa0594710:intron | 25.0% |
| ! | AATTTATCTTTGTCTGATAG+GGG | - | chr4_2:22914231-22914250 | Msa0594710:intron | 25.0% |
| ! | GAATAATTGACAGTCTAAAA+AGG | + | chr4_2:22914373-22914392 | None:intergenic | 25.0% |
| ! | TTCAGAAAATACAGATGAAA+TGG | + | chr4_2:22914431-22914450 | None:intergenic | 25.0% |
| ! | AAATAATTGTCTTCAGAATG+GGG | - | chr4_2:22914539-22914558 | Msa0594710:intron | 25.0% |
| !! | ATATATGCTTCTGATTTTAC+AGG | - | chr4_2:22915300-22915319 | Msa0594710:intron | 25.0% |
| ! | GTATAATAAACTTATCTTGC+AGG | - | chr4_2:22914119-22914138 | Msa0594710:intron | 25.0% |
| ! | GTAATTTATCTTTGTCTGAT+AGG | - | chr4_2:22914229-22914248 | Msa0594710:intron | 25.0% |
| ! | AATTTATCTTTGTCTGATAG+GGG | - | chr4_2:22914231-22914250 | Msa0594710:intron | 25.0% |
| ! | GAATAATTGACAGTCTAAAA+AGG | + | chr4_2:22914373-22914392 | None:intergenic | 25.0% |
| ! | TTCAGAAAATACAGATGAAA+TGG | + | chr4_2:22914431-22914450 | None:intergenic | 25.0% |
| ! | AAATAATTGTCTTCAGAATG+GGG | - | chr4_2:22914539-22914558 | Msa0594710:intron | 25.0% |
| !! | ATATATGCTTCTGATTTTAC+AGG | - | chr4_2:22915300-22915319 | Msa0594710:intron | 25.0% |
| GTAAAATACCAGGTTATCTA+TGG | + | chr4_2:22914171-22914190 | None:intergenic | 30.0% | |
| GATGAAAAAGGTAAAATACC+AGG | + | chr4_2:22914181-22914200 | None:intergenic | 30.0% | |
| GAAGAACAGATTGATGAAAA+AGG | + | chr4_2:22914193-22914212 | None:intergenic | 30.0% | |
| ! | GATTCTTGTTATGAAATCCA+AGG | - | chr4_2:22914313-22914332 | Msa0594710:intron | 30.0% |
| ! | GTATTTTCTGAATTACATGC+TGG | - | chr4_2:22914439-22914458 | Msa0594710:intron | 30.0% |
| !! | CTAGATAAAACTTGCTATTG+AGG | - | chr4_2:22914651-22914670 | Msa0594710:intron | 30.0% |
| !!! | GATTTAGCTTTTCTCTTAAC+TGG | - | chr4_2:22914888-22914907 | Msa0594710:intron | 30.0% |
| ATTATATTCCTCTTCAAGAG+CGG | + | chr4_2:22915025-22915044 | None:intergenic | 30.0% | |
| GTAAAATAGGTTTAGTCCAA+TGG | - | chr4_2:22915117-22915136 | Msa0594710:CDS | 30.0% | |
| AGCATATATCCATGATTGAA+GGG | + | chr4_2:22915289-22915308 | None:intergenic | 30.0% | |
| AAGCATATATCCATGATTGA+AGG | + | chr4_2:22915290-22915309 | None:intergenic | 30.0% | |
| CAACTTATAAAATGTGCTTG+TGG | - | chr4_2:22915331-22915350 | Msa0594710:intron | 30.0% | |
| GTAAAATACCAGGTTATCTA+TGG | + | chr4_2:22914171-22914190 | None:intergenic | 30.0% | |
| GATGAAAAAGGTAAAATACC+AGG | + | chr4_2:22914181-22914200 | None:intergenic | 30.0% | |
| GAAGAACAGATTGATGAAAA+AGG | + | chr4_2:22914193-22914212 | None:intergenic | 30.0% | |
| ! | GATTCTTGTTATGAAATCCA+AGG | - | chr4_2:22914313-22914332 | Msa0594710:intron | 30.0% |
| ! | GTATTTTCTGAATTACATGC+TGG | - | chr4_2:22914439-22914458 | Msa0594710:intron | 30.0% |
| !! | CTAGATAAAACTTGCTATTG+AGG | - | chr4_2:22914651-22914670 | Msa0594710:intron | 30.0% |
| !!! | GATTTAGCTTTTCTCTTAAC+TGG | - | chr4_2:22914888-22914907 | Msa0594710:intron | 30.0% |
| ATTATATTCCTCTTCAAGAG+CGG | + | chr4_2:22915025-22915044 | None:intergenic | 30.0% | |
| GTAAAATAGGTTTAGTCCAA+TGG | - | chr4_2:22915117-22915136 | Msa0594710:CDS | 30.0% | |
| AGCATATATCCATGATTGAA+GGG | + | chr4_2:22915289-22915308 | None:intergenic | 30.0% | |
| AAGCATATATCCATGATTGA+AGG | + | chr4_2:22915290-22915309 | None:intergenic | 30.0% | |
| CAACTTATAAAATGTGCTTG+TGG | - | chr4_2:22915331-22915350 | Msa0594710:intron | 30.0% | |
| AATAAACTTATCTTGCAGGG+AGG | - | chr4_2:22914123-22914142 | Msa0594710:intron | 35.0% | |
| CAATCTGTTCTTCACAAAGT+TGG | - | chr4_2:22914200-22914219 | Msa0594710:intron | 35.0% | |
| TTCTTCACAAAGTTGGAATC+TGG | - | chr4_2:22914207-22914226 | Msa0594710:intron | 35.0% | |
| GAACAACTTAATCACTGAGT+TGG | - | chr4_2:22914265-22914284 | Msa0594710:intron | 35.0% | |
| TATGAAATCCAAGGTTCTCA+TGG | - | chr4_2:22914322-22914341 | Msa0594710:intron | 35.0% | |
| CATCGTATTTACCATGATCA+AGG | - | chr4_2:22914477-22914496 | Msa0594710:intron | 35.0% | |
| GTGCAGAGAAAATGAGTTTA+AGG | - | chr4_2:22914681-22914700 | Msa0594710:intron | 35.0% | |
| AGTCTATGGAGAAACAAGTA+GGG | - | chr4_2:22915085-22915104 | Msa0594710:intron | 35.0% | |
| AGGGAAACTCAAGGTAAAAT+AGG | - | chr4_2:22915104-22915123 | Msa0594710:CDS | 35.0% | |
| ! | CATCTGTTCGACTTTTACAT+AGG | + | chr4_2:22915254-22915273 | None:intergenic | 35.0% |
| ATATATCCATGATTGAAGGG+GGG | + | chr4_2:22915286-22915305 | None:intergenic | 35.0% | |
| CATATATCCATGATTGAAGG+GGG | + | chr4_2:22915287-22915306 | None:intergenic | 35.0% | |
| GCATATATCCATGATTGAAG+GGG | + | chr4_2:22915288-22915307 | None:intergenic | 35.0% | |
| TATAAAATGTGCTTGTGGTG+AGG | - | chr4_2:22915336-22915355 | Msa0594710:intron | 35.0% | |
| AATAAACTTATCTTGCAGGG+AGG | - | chr4_2:22914123-22914142 | Msa0594710:intron | 35.0% | |
| CAATCTGTTCTTCACAAAGT+TGG | - | chr4_2:22914200-22914219 | Msa0594710:intron | 35.0% | |
| TTCTTCACAAAGTTGGAATC+TGG | - | chr4_2:22914207-22914226 | Msa0594710:intron | 35.0% | |
| GAACAACTTAATCACTGAGT+TGG | - | chr4_2:22914265-22914284 | Msa0594710:intron | 35.0% | |
| TATGAAATCCAAGGTTCTCA+TGG | - | chr4_2:22914322-22914341 | Msa0594710:intron | 35.0% | |
| CATCGTATTTACCATGATCA+AGG | - | chr4_2:22914477-22914496 | Msa0594710:intron | 35.0% | |
| GTGCAGAGAAAATGAGTTTA+AGG | - | chr4_2:22914681-22914700 | Msa0594710:intron | 35.0% | |
| AGTCTATGGAGAAACAAGTA+GGG | - | chr4_2:22915085-22915104 | Msa0594710:intron | 35.0% | |
| AGGGAAACTCAAGGTAAAAT+AGG | - | chr4_2:22915104-22915123 | Msa0594710:CDS | 35.0% | |
| ! | CATCTGTTCGACTTTTACAT+AGG | + | chr4_2:22915254-22915273 | None:intergenic | 35.0% |
| ATATATCCATGATTGAAGGG+GGG | + | chr4_2:22915286-22915305 | None:intergenic | 35.0% | |
| CATATATCCATGATTGAAGG+GGG | + | chr4_2:22915287-22915306 | None:intergenic | 35.0% | |
| GCATATATCCATGATTGAAG+GGG | + | chr4_2:22915288-22915307 | None:intergenic | 35.0% | |
| TATAAAATGTGCTTGTGGTG+AGG | - | chr4_2:22915336-22915355 | Msa0594710:intron | 35.0% | |
| TAACTGTGCCATAGATAACC+TGG | - | chr4_2:22914160-22914179 | Msa0594710:intron | 40.0% | |
| AGTTGGATTCAGCTAAAGCA+AGG | - | chr4_2:22914282-22914301 | Msa0594710:intron | 40.0% | |
| GTTAATGTCCATGAGAACCT+TGG | + | chr4_2:22914333-22914352 | None:intergenic | 40.0% | |
| GGTTCTCATGGACATTAACA+AGG | - | chr4_2:22914334-22914353 | Msa0594710:CDS | 40.0% | |
| CATGCACGTATATAGAGAGA+TGG | - | chr4_2:22914750-22914769 | Msa0594710:intron | 40.0% | |
| CTCAGGCTAGATCATTCATT+TGG | + | chr4_2:22914983-22915002 | None:intergenic | 40.0% | |
| !!! | ATATCAGCTGCTTTTAGCTC+AGG | + | chr4_2:22915000-22915019 | None:intergenic | 40.0% |
| TGATATAACCGCTCTTGAAG+AGG | - | chr4_2:22915014-22915033 | Msa0594710:intron | 40.0% | |
| AACCGAATACTTGCAGTCTA+TGG | - | chr4_2:22915071-22915090 | Msa0594710:intron | 40.0% | |
| CTCCATAGACTGCAAGTATT+CGG | + | chr4_2:22915076-22915095 | None:intergenic | 40.0% | |
| CAGTCTATGGAGAAACAAGT+AGG | - | chr4_2:22915084-22915103 | Msa0594710:intron | 40.0% | |
| GAAACAAGTAGGGAAACTCA+AGG | - | chr4_2:22915095-22915114 | Msa0594710:CDS | 40.0% | |
| TAACTGTGCCATAGATAACC+TGG | - | chr4_2:22914160-22914179 | Msa0594710:intron | 40.0% | |
| AGTTGGATTCAGCTAAAGCA+AGG | - | chr4_2:22914282-22914301 | Msa0594710:intron | 40.0% | |
| GTTAATGTCCATGAGAACCT+TGG | + | chr4_2:22914333-22914352 | None:intergenic | 40.0% | |
| GGTTCTCATGGACATTAACA+AGG | - | chr4_2:22914334-22914353 | Msa0594710:CDS | 40.0% | |
| CATGCACGTATATAGAGAGA+TGG | - | chr4_2:22914750-22914769 | Msa0594710:intron | 40.0% | |
| CTCAGGCTAGATCATTCATT+TGG | + | chr4_2:22914983-22915002 | None:intergenic | 40.0% | |
| !!! | ATATCAGCTGCTTTTAGCTC+AGG | + | chr4_2:22915000-22915019 | None:intergenic | 40.0% |
| TGATATAACCGCTCTTGAAG+AGG | - | chr4_2:22915014-22915033 | Msa0594710:intron | 40.0% | |
| AACCGAATACTTGCAGTCTA+TGG | - | chr4_2:22915071-22915090 | Msa0594710:intron | 40.0% | |
| CTCCATAGACTGCAAGTATT+CGG | + | chr4_2:22915076-22915095 | None:intergenic | 40.0% | |
| CAGTCTATGGAGAAACAAGT+AGG | - | chr4_2:22915084-22915103 | Msa0594710:intron | 40.0% | |
| GAAACAAGTAGGGAAACTCA+AGG | - | chr4_2:22915095-22915114 | Msa0594710:CDS | 40.0% | |
| ACATGCTGGAATGTGTGCAT+TGG | - | chr4_2:22914453-22914472 | Msa0594710:intron | 45.0% | |
| CATGCTGGAATGTGTGCATT+GGG | - | chr4_2:22914454-22914473 | Msa0594710:intron | 45.0% | |
| GCAGTGTTCAACCTTGATCA+TGG | + | chr4_2:22914491-22914510 | None:intergenic | 45.0% | |
| ! | GCTCTTTTGTCTGACAAAGC+TGG | - | chr4_2:22915045-22915064 | Msa0594710:intron | 45.0% |
| TAGTTTCCCCCCTTCAATCA+TGG | - | chr4_2:22915277-22915296 | Msa0594710:CDS | 45.0% | |
| ACATGCTGGAATGTGTGCAT+TGG | - | chr4_2:22914453-22914472 | Msa0594710:intron | 45.0% | |
| CATGCTGGAATGTGTGCATT+GGG | - | chr4_2:22914454-22914473 | Msa0594710:intron | 45.0% | |
| GCAGTGTTCAACCTTGATCA+TGG | + | chr4_2:22914491-22914510 | None:intergenic | 45.0% | |
| ! | GCTCTTTTGTCTGACAAAGC+TGG | - | chr4_2:22915045-22915064 | Msa0594710:intron | 45.0% |
| TAGTTTCCCCCCTTCAATCA+TGG | - | chr4_2:22915277-22915296 | Msa0594710:CDS | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 22914048 | 22915396 | 22914048 | ID=Msa0594710;Name=Msa0594710 |
| chr4_2 | mRNA | 22914048 | 22915396 | 22914048 | ID=Msa0594710-mRNA-1;Parent=Msa0594710;Name=Msa0594710-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.25|0.2|0.8|0.75|0.6|5|0|115 |
| chr4_2 | exon | 22915393 | 22915396 | 22915393 | ID=Msa0594710-mRNA-1:exon:6241;Parent=Msa0594710-mRNA-1 |
| chr4_2 | exon | 22915263 | 22915303 | 22915263 | ID=Msa0594710-mRNA-1:exon:6240;Parent=Msa0594710-mRNA-1 |
| chr4_2 | exon | 22915089 | 22915193 | 22915089 | ID=Msa0594710-mRNA-1:exon:6239;Parent=Msa0594710-mRNA-1 |
| chr4_2 | exon | 22914328 | 22914447 | 22914328 | ID=Msa0594710-mRNA-1:exon:6238;Parent=Msa0594710-mRNA-1 |
| chr4_2 | exon | 22914048 | 22914122 | 22914048 | ID=Msa0594710-mRNA-1:exon:6237;Parent=Msa0594710-mRNA-1 |
| chr4_2 | CDS | 22915393 | 22915396 | 22915393 | ID=Msa0594710-mRNA-1:cds;Parent=Msa0594710-mRNA-1 |
| chr4_2 | CDS | 22915263 | 22915303 | 22915263 | ID=Msa0594710-mRNA-1:cds;Parent=Msa0594710-mRNA-1 |
| chr4_2 | CDS | 22915089 | 22915193 | 22915089 | ID=Msa0594710-mRNA-1:cds;Parent=Msa0594710-mRNA-1 |
| chr4_2 | CDS | 22914328 | 22914447 | 22914328 | ID=Msa0594710-mRNA-1:cds;Parent=Msa0594710-mRNA-1 |
| chr4_2 | CDS | 22914048 | 22914122 | 22914048 | ID=Msa0594710-mRNA-1:cds;Parent=Msa0594710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
