Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615590 | XP_024637193.1 | 95.167 | 269 | 11 | 1 | 1 | 267 | 1 | 269 | 0.0 | 530 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615590 | sp|Q0WPS2|B561M_ARATH | 45.390 | 282 | 137 | 5 | 1 | 266 | 1 | 281 | 2.47e-75 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006000 | Msa0615590 | 0.802159 | 6.402749e-49 | -8.615850e-47 |
| Msa0012080 | Msa0615590 | 0.817068 | 3.995220e-52 | -8.615850e-47 |
| Msa0017510 | Msa0615590 | 0.836423 | 9.442126e-57 | -8.615850e-47 |
| Msa0028640 | Msa0615590 | 0.818744 | 1.670602e-52 | -8.615850e-47 |
| Msa0032090 | Msa0615590 | 0.816318 | 5.881678e-52 | -8.615850e-47 |
| Msa0032430 | Msa0615590 | 0.812518 | 4.071344e-51 | -8.615850e-47 |
| Msa0034270 | Msa0615590 | 0.805319 | 1.413609e-49 | -8.615850e-47 |
| Msa0079380 | Msa0615590 | 0.814850 | 1.248880e-51 | -8.615850e-47 |
| Msa0089630 | Msa0615590 | 0.809740 | 1.629457e-50 | -8.615850e-47 |
| Msa0094120 | Msa0615590 | 0.808516 | 2.981264e-50 | -8.615850e-47 |
| Msa0110970 | Msa0615590 | 0.819848 | 9.359740e-53 | -8.615850e-47 |
| Msa0615590 | Msa0616220 | 0.843531 | 1.323581e-58 | -8.615850e-47 |
| Msa0615590 | Msa0625720 | 0.803161 | 3.978104e-49 | -8.615850e-47 |
| Msa0615590 | Msa0633840 | 0.800911 | 1.154273e-48 | -8.615850e-47 |
| Msa0615590 | Msa0639430 | 0.815518 | 8.872518e-52 | -8.615850e-47 |
| Msa0615590 | Msa0650020 | 0.823904 | 1.077228e-53 | -8.615850e-47 |
| Msa0615590 | Msa0661650 | 0.805051 | 1.608867e-49 | -8.615850e-47 |
| Msa0615590 | Msa0661790 | 0.804415 | 2.184570e-49 | -8.615850e-47 |
| Msa0615590 | Msa0669320 | 0.802651 | 5.071395e-49 | -8.615850e-47 |
| Msa0615590 | Msa0682330 | 0.806947 | 6.422708e-50 | -8.615850e-47 |
| Msa0615590 | Msa0691980 | 0.816526 | 5.285679e-52 | -8.615850e-47 |
| Msa0615590 | Msa0698770 | 0.931632 | 2.835173e-94 | -8.615850e-47 |
| Msa0615590 | Msa0699550 | 0.831483 | 1.626807e-55 | -8.615850e-47 |
| Msa0615590 | Msa0770720 | 0.810862 | 9.334882e-51 | -8.615850e-47 |
| Msa0615590 | Msa0796530 | 0.803884 | 2.817285e-49 | -8.615850e-47 |
| Msa0615590 | Msa0850960 | 0.803615 | 3.203694e-49 | -8.615850e-47 |
| Msa0615590 | Msa0871270 | 0.813066 | 3.088683e-51 | -8.615850e-47 |
| Msa0615590 | Msa0878500 | 0.804190 | 2.433302e-49 | -8.615850e-47 |
| Msa0615590 | Msa0880140 | 0.835501 | 1.617425e-56 | -8.615850e-47 |
| Msa0615590 | Msa0894390 | 0.803833 | 2.886091e-49 | -8.615850e-47 |
| Msa0615590 | Msa0920870 | 0.809218 | 2.109468e-50 | -8.615850e-47 |
| Msa0615590 | Msa0938220 | 0.804074 | 2.572489e-49 | -8.615850e-47 |
| Msa0615590 | Msa0944190 | 0.815856 | 7.461479e-52 | -8.615850e-47 |
| Msa0615590 | Msa0975340 | 0.802038 | 6.780138e-49 | -8.615850e-47 |
| Msa0615590 | Msa0994950 | 0.803709 | 3.062618e-49 | -8.615850e-47 |
| Msa0615590 | Msa1010110 | 0.816800 | 4.588406e-52 | -8.615850e-47 |
| Msa0615590 | Msa1013400 | 0.807177 | 5.741560e-50 | -8.615850e-47 |
| Msa0615590 | Msa1023400 | 0.807001 | 6.254342e-50 | -8.615850e-47 |
| Msa0615590 | Msa1108160 | 0.800069 | 1.712931e-48 | -8.615850e-47 |
| Msa0615590 | Msa1147900 | 0.806530 | 7.864896e-50 | -8.615850e-47 |
| Msa0615590 | Msa1209460 | 0.828326 | 9.567487e-55 | -8.615850e-47 |
| Msa0615590 | Msa1218600 | 0.805558 | 1.259791e-49 | -8.615850e-47 |
| Msa0615590 | Msa1283860 | 0.810503 | 1.116029e-50 | -8.615850e-47 |
| Msa0615590 | Msa1298820 | 0.804337 | 2.267720e-49 | -8.615850e-47 |
| Msa0615590 | Msa1320410 | 0.815878 | 7.375803e-52 | -8.615850e-47 |
| Msa0615590 | Msa1370010 | 0.811255 | 7.670681e-51 | -8.615850e-47 |
| Msa0615590 | Msa1374120 | 0.809517 | 1.819315e-50 | -8.615850e-47 |
| Msa0615590 | Msa1417870 | 0.807573 | 4.732099e-50 | -8.615850e-47 |
| Msa0615590 | Msa1423350 | 0.800461 | 1.425809e-48 | -8.615850e-47 |
| Msa0124060 | Msa0615590 | 0.800989 | 1.112652e-48 | -8.615850e-47 |
| Msa0140570 | Msa0615590 | 0.803907 | 2.786615e-49 | -8.615850e-47 |
| Msa0157290 | Msa0615590 | 0.836298 | 1.015883e-56 | -8.615850e-47 |
| Msa0172070 | Msa0615590 | 0.814209 | 1.731261e-51 | -8.615850e-47 |
| Msa0173660 | Msa0615590 | 0.805281 | 1.439966e-49 | -8.615850e-47 |
| Msa0225740 | Msa0615590 | 0.807596 | 4.678777e-50 | -8.615850e-47 |
| Msa0417270 | Msa0615590 | 0.808293 | 3.326295e-50 | -8.615850e-47 |
| Msa0417880 | Msa0615590 | 0.809993 | 1.437371e-50 | -8.615850e-47 |
| Msa0461730 | Msa0615590 | 0.805638 | 1.211738e-49 | -8.615850e-47 |
| Msa0469030 | Msa0615590 | 0.808770 | 2.630383e-50 | -8.615850e-47 |
| Msa0260610 | Msa0615590 | 0.801924 | 7.155218e-49 | -8.615850e-47 |
| Msa0261340 | Msa0615590 | 0.803860 | 2.849235e-49 | -8.615850e-47 |
| Msa0272690 | Msa0615590 | 0.808164 | 3.543183e-50 | -8.615850e-47 |
| Msa0309770 | Msa0615590 | 0.800214 | 1.600431e-48 | -8.615850e-47 |
| Msa0337540 | Msa0615590 | 0.815263 | 1.011135e-51 | -8.615850e-47 |
| Msa0507680 | Msa0615590 | 0.800108 | 1.682590e-48 | -8.615850e-47 |
| Msa0516320 | Msa0615590 | 0.801534 | 8.604823e-49 | -8.615850e-47 |
| Msa0546680 | Msa0615590 | 0.817892 | 2.604726e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615590 | MtrunA17_Chr4g0052201 | 94.796 | 269 | 11 | 2 | 1 | 267 | 1 | 268 | 0.0 | 524 |
| Msa0615590 | MtrunA17_Chr3g0096101 | 48.085 | 235 | 108 | 4 | 18 | 252 | 24 | 244 | 4.50e-66 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615590 | AT4G18260.1 | 45.390 | 282 | 137 | 5 | 1 | 266 | 1 | 281 | 2.51e-76 | 233 |
| Msa0615590 | AT2G30890.1 | 46.739 | 184 | 98 | 0 | 42 | 225 | 39 | 222 | 1.88e-58 | 187 |
| Msa0615590 | AT4G17280.1 | 26.943 | 193 | 120 | 5 | 58 | 238 | 218 | 401 | 2.46e-11 | 63.5 |
Find 67 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTAAGATATGATTGTTTC+TGG | 0.134092 | 4_2:-65055488 | None:intergenic |
| TGATCCAGGTTCTGCTTTAT+TGG | 0.158743 | 4_2:-65056071 | None:intergenic |
| CATTACATGGATTGCTTCTA+TGG | 0.160282 | 4_2:+65055999 | Msa0615590:CDS |
| TTATCTCTTCCAAGACAAAT+TGG | 0.252783 | 4_2:+65057517 | Msa0615590:CDS |
| AGATTAGGTCTAGCACTTTA+TGG | 0.256796 | 4_2:+65056680 | Msa0615590:CDS |
| GAAAGAAAGAGAGGAGTTAT+TGG | 0.266562 | 4_2:+65057342 | Msa0615590:CDS |
| GTTGGATTCTTAATTCCTCT+TGG | 0.345677 | 4_2:+65056028 | Msa0615590:CDS |
| GATAATAACCATCAAAGATT+AGG | 0.351198 | 4_2:+65056665 | Msa0615590:CDS |
| GTGCTAGACCTAATCTTTGA+TGG | 0.351725 | 4_2:-65056673 | None:intergenic |
| CTTGGGATACTTACAATTAG+AGG | 0.356264 | 4_2:+65056046 | Msa0615590:CDS |
| TACTTTGCACACTGGATACT+AGG | 0.365036 | 4_2:+65057365 | Msa0615590:CDS |
| CACTCAATGCACAACCTTGA+AGG | 0.378313 | 4_2:+65055680 | Msa0615590:CDS |
| TTACATCTTGATTAGGCTGT+TGG | 0.389458 | 4_2:+65057797 | Msa0615590:three_prime_UTR |
| ATACTTGTGCAAGCTTTCAT+TGG | 0.402865 | 4_2:+65056707 | Msa0615590:CDS |
| GAAACAGTGGGAGAAGCTTA+AGG | 0.403693 | 4_2:+65055536 | Msa0615590:five_prime_UTR |
| GTTGCCTTTGAGGAATATCT+TGG | 0.404336 | 4_2:-65057598 | None:intergenic |
| TTTATCTTTCCACATGCAAT+TGG | 0.411092 | 4_2:-65057641 | None:intergenic |
| AAACTGATTCACTTCCTTCA+AGG | 0.412265 | 4_2:-65055694 | None:intergenic |
| ATTCTGCTCCTTCTTGATCC+AGG | 0.424374 | 4_2:-65056085 | None:intergenic |
| TCAGTGCTTCTTGCCACAGT+TGG | 0.425538 | 4_2:+65056605 | Msa0615590:CDS |
| TTGGATTCTTAATTCCTCTT+GGG | 0.428824 | 4_2:+65056029 | Msa0615590:CDS |
| TTGCTTCTATGGGGTTCAGT+TGG | 0.452928 | 4_2:+65056010 | Msa0615590:CDS |
| TCATATATTCCAATTTGTCT+TGG | 0.455113 | 4_2:-65057526 | None:intergenic |
| GGGACAATAGTTTCCCTTGT+GGG | 0.457433 | 4_2:+65057386 | Msa0615590:CDS |
| TGTTGCTGTGTTATTGTGCT+AGG | 0.468581 | 4_2:+65055589 | Msa0615590:five_prime_UTR |
| AAACAGTGGGAGAAGCTTAA+GGG | 0.476795 | 4_2:+65055537 | Msa0615590:five_prime_UTR |
| AGAAAGCAAGGAGTGATTGA+AGG | 0.481400 | 4_2:+65057548 | Msa0615590:CDS |
| ATTACATGGATTGCTTCTAT+GGG | 0.484467 | 4_2:+65056000 | Msa0615590:CDS |
| TCAAAGGCAACAAAATCAAA+AGG | 0.490057 | 4_2:+65057610 | Msa0615590:CDS |
| TGTTTGACTAATCACGTGAC+GGG | 0.490630 | 4_2:+65057678 | Msa0615590:exon |
| AGATATGATTGTTTCTGGTA+TGG | 0.491841 | 4_2:-65055483 | None:intergenic |
| AAGGTTGTGCATTGAGTGAA+AGG | 0.493149 | 4_2:-65055675 | None:intergenic |
| CTTTGTTATTTGTGTTCCTG+TGG | 0.515228 | 4_2:-65055722 | None:intergenic |
| TTTGCAGGGGAAAGAAAGAG+AGG | 0.525844 | 4_2:+65057333 | Msa0615590:intron |
| TGTCAAATCTCACTAGATCA+TGG | 0.529019 | 4_2:-65057717 | None:intergenic |
| GATTGTTTCTGGTATGGCAG+AGG | 0.549951 | 4_2:-65055477 | None:intergenic |
| TGAATCAGTTTAACAGCCAC+AGG | 0.550927 | 4_2:+65055706 | Msa0615590:CDS |
| GCATGCACTTTATATGTAAG+TGG | 0.551708 | 4_2:+65057849 | Msa0615590:three_prime_UTR |
| TTGGAATATATGAGAAAGCA+AGG | 0.553151 | 4_2:+65057536 | Msa0615590:CDS |
| ATTGTTTCTGGTATGGCAGA+GGG | 0.555543 | 4_2:-65055476 | None:intergenic |
| CAAAACTCAGAGAGAAACAG+TGG | 0.556146 | 4_2:+65055523 | Msa0615590:five_prime_UTR |
| TTGGGATACTTACAATTAGA+GGG | 0.558079 | 4_2:+65056047 | Msa0615590:CDS |
| CACAAATAACAAAGTTCACA+AGG | 0.567973 | 4_2:+65055731 | Msa0615590:CDS |
| GCATCAGATATAGCATTACA+TGG | 0.577510 | 4_2:+65055986 | Msa0615590:CDS |
| GGGTCCAATAAAGCAGAACC+TGG | 0.582617 | 4_2:+65056067 | Msa0615590:CDS |
| CATGCACTTTATATGTAAGT+GGG | 0.583363 | 4_2:+65057850 | Msa0615590:three_prime_UTR |
| GTTATTGGTACTTTGCACAC+TGG | 0.583701 | 4_2:+65057357 | Msa0615590:CDS |
| TTGTTTGACTAATCACGTGA+CGG | 0.584500 | 4_2:+65057677 | Msa0615590:exon |
| GCAACACAAAACTACGTACA+AGG | 0.590228 | 4_2:-65055572 | None:intergenic |
| ACTTTGCACACTGGATACTA+GGG | 0.594151 | 4_2:+65057366 | Msa0615590:CDS |
| GGACAATAGTTTCCCTTGTG+GGG | 0.599488 | 4_2:+65057387 | Msa0615590:CDS |
| GGGGATCATCAACATTTACA+CGG | 0.604072 | 4_2:+65057406 | Msa0615590:CDS |
| TGTGGAAAGATAAATGCACT+TGG | 0.614446 | 4_2:+65057650 | Msa0615590:CDS |
| AAGCAGAACCTGGATCAAGA+AGG | 0.617858 | 4_2:+65056077 | Msa0615590:CDS |
| CTTACCAAGATATTCCTCAA+AGG | 0.620966 | 4_2:+65057594 | Msa0615590:CDS |
| GGGATCATCAACATTTACAC+GGG | 0.632584 | 4_2:+65057407 | Msa0615590:CDS |
| TTACATGGATTGCTTCTATG+GGG | 0.637280 | 4_2:+65056001 | Msa0615590:CDS |
| AAAACTCAGAGAGAAACAGT+GGG | 0.651101 | 4_2:+65055524 | Msa0615590:five_prime_UTR |
| TGACATAGCAGCTCCAACTG+TGG | 0.651797 | 4_2:-65056618 | None:intergenic |
| GAGATGTTGCCAATTGCATG+TGG | 0.663285 | 4_2:+65057632 | Msa0615590:CDS |
| ACATGACCTGAAAAGCAACA+TGG | 0.664285 | 4_2:-65056120 | None:intergenic |
| CTAATTGTAAGTATCCCAAG+AGG | 0.664951 | 4_2:-65056043 | None:intergenic |
| AAATGTTGATGATCCCCACA+AGG | 0.667752 | 4_2:-65057400 | None:intergenic |
| AGGGACAATAGTTTCCCTTG+TGG | 0.671953 | 4_2:+65057385 | Msa0615590:CDS |
| TATTAATGAATTAACCTGTG+AGG | 0.677038 | 4_2:-65056740 | None:intergenic |
| AATGTTGATGATCCCCACAA+GGG | 0.682717 | 4_2:-65057399 | None:intergenic |
| GTTTGACTAATCACGTGACG+GGG | 0.714504 | 4_2:+65057679 | Msa0615590:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAAAAGAAAAAAAAAAAA+AGG | + | chr4_2:65057760-65057779 | Msa0615590:three_prime_UTR | 10.0% |
| !!! | GTTTAACAACAATTTTAAAT+TGG | + | chr4_2:65055823-65055842 | Msa0615590:intron | 15.0% |
| !!! | TTTTAAATTGGTGAATAAAT+CGG | + | chr4_2:65055835-65055854 | Msa0615590:intron | 15.0% |
| !!! | TTTTAATCAACAAGAATTAA+TGG | - | chr4_2:65056153-65056172 | None:intergenic | 15.0% |
| !! | AGAAATACAGAAAATTAAAA+TGG | - | chr4_2:65056823-65056842 | None:intergenic | 15.0% |
| !!! | TAATTTTTCACTTTAGTTTT+TGG | + | chr4_2:65057825-65057844 | Msa0615590:three_prime_UTR | 15.0% |
| !!! | ATGAATTATGATTTTATGAA+AGG | + | chr4_2:65057875-65057894 | Msa0615590:three_prime_UTR | 15.0% |
| !!! | TTTTAAAGTGTGTTAATGAA+GGG | - | chr4_2:65055453-65055472 | None:intergenic | 20.0% |
| !!! | TCATTTTATTAACCACAAAT+CGG | - | chr4_2:65055891-65055910 | None:intergenic | 20.0% |
| !! | ATAGTGTTAAATTATCTTAG+TGG | + | chr4_2:65056223-65056242 | Msa0615590:intron | 20.0% |
| !!! | TTTTTAGCCTAAAAATAACA+AGG | - | chr4_2:65056946-65056965 | None:intergenic | 20.0% |
| !!! | TAGTTTCTCATAATTTTCAA+CGG | + | chr4_2:65056975-65056994 | Msa0615590:intron | 20.0% |
| !! | ATATTAAAACATTACAGTGT+AGG | - | chr4_2:65057282-65057301 | None:intergenic | 20.0% |
| !!! | ACACTGTAATGTTTTAATAT+AGG | + | chr4_2:65057282-65057301 | Msa0615590:intron | 20.0% |
| !!! | CACTGTAATGTTTTAATATA+GGG | + | chr4_2:65057283-65057302 | Msa0615590:intron | 20.0% |
| !! | AATATTCTAATTGAATTTGC+AGG | + | chr4_2:65057318-65057337 | Msa0615590:intron | 20.0% |
| !! | ATATTCTAATTGAATTTGCA+GGG | + | chr4_2:65057319-65057338 | Msa0615590:intron | 20.0% |
| !!! | TTTTCTATTACATCTTGATT+AGG | + | chr4_2:65057790-65057809 | Msa0615590:three_prime_UTR | 20.0% |
| !!! | CTTTTAAAGTGTGTTAATGA+AGG | - | chr4_2:65055454-65055473 | None:intergenic | 25.0% |
| !!! | CTTTAAGATATGATTGTTTC+TGG | - | chr4_2:65055491-65055510 | None:intergenic | 25.0% |
| ! | TTTGTTAAAAACTTGACAAG+TGG | + | chr4_2:65056199-65056218 | Msa0615590:intron | 25.0% |
| !!! | ACTTGCTTTAACTTTTATAG+TGG | + | chr4_2:65056323-65056342 | Msa0615590:intron | 25.0% |
| !!! | GTAGTTTTTTTTAAGCTCTT+TGG | + | chr4_2:65056499-65056518 | Msa0615590:intron | 25.0% |
| !! | TTTTTACAATGAGGATAGAA+AGG | - | chr4_2:65056556-65056575 | None:intergenic | 25.0% |
| !!! | GTTAGACTATTTTTACAATG+AGG | - | chr4_2:65056565-65056584 | None:intergenic | 25.0% |
| ! | GATAATAACCATCAAAGATT+AGG | + | chr4_2:65056665-65056684 | Msa0615590:CDS | 25.0% |
| ! | TATTAATGAATTAACCTGTG+AGG | - | chr4_2:65056743-65056762 | None:intergenic | 25.0% |
| !!! | GGATTTATTAGCTTTATATG+AGG | - | chr4_2:65056772-65056791 | None:intergenic | 25.0% |
| !!! | AGGGAAAACTTTAGAATATT+TGG | + | chr4_2:65056861-65056880 | Msa0615590:intron | 25.0% |
| ! | TGTGATGACTAATAAAAAAC+AGG | - | chr4_2:65056914-65056933 | None:intergenic | 25.0% |
| !!! | ATTGTTGCCTTGTTATTTTT+AGG | + | chr4_2:65056936-65056955 | Msa0615590:intron | 25.0% |
| !! | AGTTTCTCATAATTTTCAAC+GGG | + | chr4_2:65056976-65056995 | Msa0615590:intron | 25.0% |
| ! | CCTTTCAAATATCTATGTAT+AGG | - | chr4_2:65057106-65057125 | None:intergenic | 25.0% |
| ! | CCTATACATAGATATTTGAA+AGG | + | chr4_2:65057103-65057122 | Msa0615590:intron | 25.0% |
| ! | TATTCTAATTGAATTTGCAG+GGG | + | chr4_2:65057320-65057339 | Msa0615590:intron | 25.0% |
| ! | TCATATATTCCAATTTGTCT+TGG | - | chr4_2:65057529-65057548 | None:intergenic | 25.0% |
| !! | AGATATGATTGTTTCTGGTA+TGG | - | chr4_2:65055486-65055505 | None:intergenic | 30.0% |
| CACAAATAACAAAGTTCACA+AGG | + | chr4_2:65055731-65055750 | Msa0615590:CDS | 30.0% | |
| CCAGTACGTACTTATAATAA+AGG | - | chr4_2:65055936-65055955 | None:intergenic | 30.0% | |
| CCTTTATTATAAGTACGTAC+TGG | + | chr4_2:65055933-65055952 | Msa0615590:intron | 30.0% | |
| TTATTATAAGTACGTACTGG+TGG | + | chr4_2:65055936-65055955 | Msa0615590:intron | 30.0% | |
| ! | ATTACATGGATTGCTTCTAT+GGG | + | chr4_2:65056000-65056019 | Msa0615590:CDS | 30.0% |
| TTGGATTCTTAATTCCTCTT+GGG | + | chr4_2:65056029-65056048 | Msa0615590:CDS | 30.0% | |
| TTGGGATACTTACAATTAGA+GGG | + | chr4_2:65056047-65056066 | Msa0615590:CDS | 30.0% | |
| ATGAGGATAGAAAGGTAAAA+AGG | - | chr4_2:65056548-65056567 | None:intergenic | 30.0% | |
| TACTATGAAGTTTGTGTTGT+TGG | - | chr4_2:65056793-65056812 | None:intergenic | 30.0% | |
| TCCTCAAACTTTCATACAAA+GGG | - | chr4_2:65057061-65057080 | None:intergenic | 30.0% | |
| !! | CCAAAACAATGTGCTTTTTA+AGG | - | chr4_2:65057456-65057475 | None:intergenic | 30.0% |
| !! | CCTTAAAAAGCACATTGTTT+TGG | + | chr4_2:65057453-65057472 | Msa0615590:CDS | 30.0% |
| !! | TTGGACTATACTTTTTACAG+TGG | + | chr4_2:65057472-65057491 | Msa0615590:CDS | 30.0% |
| TTATCTCTTCCAAGACAAAT+TGG | + | chr4_2:65057517-65057536 | Msa0615590:CDS | 30.0% | |
| TTGGAATATATGAGAAAGCA+AGG | + | chr4_2:65057536-65057555 | Msa0615590:CDS | 30.0% | |
| !!! | TTTTGATTTTGTTGCCTTTG+AGG | - | chr4_2:65057611-65057630 | None:intergenic | 30.0% |
| TCAAAGGCAACAAAATCAAA+AGG | + | chr4_2:65057610-65057629 | Msa0615590:CDS | 30.0% | |
| TTTATCTTTCCACATGCAAT+TGG | - | chr4_2:65057644-65057663 | None:intergenic | 30.0% | |
| CATGCACTTTATATGTAAGT+GGG | + | chr4_2:65057850-65057869 | Msa0615590:three_prime_UTR | 30.0% | |
| AAAACTCAGAGAGAAACAGT+GGG | + | chr4_2:65055524-65055543 | Msa0615590:five_prime_UTR | 35.0% | |
| ! | AAACTGATTCACTTCCTTCA+AGG | - | chr4_2:65055697-65055716 | None:intergenic | 35.0% |
| !! | CTTTGTTATTTGTGTTCCTG+TGG | - | chr4_2:65055725-65055744 | None:intergenic | 35.0% |
| !! | TCAATTTAGTGACCGATTTG+TGG | + | chr4_2:65055876-65055895 | Msa0615590:intron | 35.0% |
| GAATGATCACTGCTAAAAAC+TGG | - | chr4_2:65055914-65055933 | None:intergenic | 35.0% | |
| GCATCAGATATAGCATTACA+TGG | + | chr4_2:65055986-65056005 | Msa0615590:CDS | 35.0% | |
| ! | CATTACATGGATTGCTTCTA+TGG | + | chr4_2:65055999-65056018 | Msa0615590:CDS | 35.0% |
| ! | TTACATGGATTGCTTCTATG+GGG | + | chr4_2:65056001-65056020 | Msa0615590:CDS | 35.0% |
| GTTGGATTCTTAATTCCTCT+TGG | + | chr4_2:65056028-65056047 | Msa0615590:CDS | 35.0% | |
| CTAATTGTAAGTATCCCAAG+AGG | - | chr4_2:65056046-65056065 | None:intergenic | 35.0% | |
| CTTGGGATACTTACAATTAG+AGG | + | chr4_2:65056046-65056065 | Msa0615590:CDS | 35.0% | |
| !!! | CTATTTCCATGTTGCTTTTC+AGG | + | chr4_2:65056114-65056133 | Msa0615590:CDS | 35.0% |
| GAACTATAAGTCGTCTACAT+TGG | + | chr4_2:65056468-65056487 | Msa0615590:intron | 35.0% | |
| AGATTAGGTCTAGCACTTTA+TGG | + | chr4_2:65056680-65056699 | Msa0615590:CDS | 35.0% | |
| ATACTTGTGCAAGCTTTCAT+TGG | + | chr4_2:65056707-65056726 | Msa0615590:CDS | 35.0% | |
| ! | AGCTCCTCATATTTTCATGT+TGG | + | chr4_2:65057023-65057042 | Msa0615590:intron | 35.0% |
| ! | GCTCCTCATATTTTCATGTT+GGG | + | chr4_2:65057024-65057043 | Msa0615590:intron | 35.0% |
| ! | CTCCTCATATTTTCATGTTG+GGG | + | chr4_2:65057025-65057044 | Msa0615590:intron | 35.0% |
| TCCCTTTGTATGAAAGTTTG+AGG | + | chr4_2:65057057-65057076 | Msa0615590:intron | 35.0% | |
| GTCCTCAAACTTTCATACAA+AGG | - | chr4_2:65057062-65057081 | None:intergenic | 35.0% | |
| GAAAGAAAGAGAGGAGTTAT+TGG | + | chr4_2:65057342-65057361 | Msa0615590:CDS | 35.0% | |
| !! | ACAGTGGAAGTCTTTTTCAT+TGG | + | chr4_2:65057488-65057507 | Msa0615590:CDS | 35.0% |
| CTTACCAAGATATTCCTCAA+AGG | + | chr4_2:65057594-65057613 | Msa0615590:CDS | 35.0% | |
| TGTGGAAAGATAAATGCACT+TGG | + | chr4_2:65057650-65057669 | Msa0615590:CDS | 35.0% | |
| TTGTTTGACTAATCACGTGA+CGG | + | chr4_2:65057677-65057696 | Msa0615590:exon | 35.0% | |
| TGTCAAATCTCACTAGATCA+TGG | - | chr4_2:65057720-65057739 | None:intergenic | 35.0% | |
| TTACATCTTGATTAGGCTGT+TGG | + | chr4_2:65057797-65057816 | Msa0615590:three_prime_UTR | 35.0% | |
| GCATGCACTTTATATGTAAG+TGG | + | chr4_2:65057849-65057868 | Msa0615590:three_prime_UTR | 35.0% | |
| !! | ATTGTTTCTGGTATGGCAGA+GGG | - | chr4_2:65055479-65055498 | None:intergenic | 40.0% |
| CAAAACTCAGAGAGAAACAG+TGG | + | chr4_2:65055523-65055542 | Msa0615590:five_prime_UTR | 40.0% | |
| AAACAGTGGGAGAAGCTTAA+GGG | + | chr4_2:65055537-65055556 | Msa0615590:five_prime_UTR | 40.0% | |
| GCAACACAAAACTACGTACA+AGG | - | chr4_2:65055575-65055594 | None:intergenic | 40.0% | |
| ! | TGTTGCTGTGTTATTGTGCT+AGG | + | chr4_2:65055589-65055608 | Msa0615590:five_prime_UTR | 40.0% |
| AAGGTTGTGCATTGAGTGAA+AGG | - | chr4_2:65055678-65055697 | None:intergenic | 40.0% | |
| TGAATCAGTTTAACAGCCAC+AGG | + | chr4_2:65055706-65055725 | Msa0615590:CDS | 40.0% | |
| GCTAACTATCTAGCAGCTAT+TGG | + | chr4_2:65055801-65055820 | Msa0615590:intron | 40.0% | |
| ! | GTACTGGTGGTTAATATAGC+AGG | + | chr4_2:65055949-65055968 | Msa0615590:intron | 40.0% |
| TGATCCAGGTTCTGCTTTAT+TGG | - | chr4_2:65056074-65056093 | None:intergenic | 40.0% | |
| ACATGACCTGAAAAGCAACA+TGG | - | chr4_2:65056123-65056142 | None:intergenic | 40.0% | |
| GTGCTAGACCTAATCTTTGA+TGG | - | chr4_2:65056676-65056695 | None:intergenic | 40.0% | |
| !! | TTGGATTTTTCAGACCTCAC+AGG | + | chr4_2:65056726-65056745 | Msa0615590:CDS | 40.0% |
| TGCATGCATGTTAATCAGCA+GGG | + | chr4_2:65056842-65056861 | Msa0615590:intron | 40.0% | |
| GTCCCCAACATGAAAATATG+AGG | - | chr4_2:65057030-65057049 | None:intergenic | 40.0% | |
| GTTATTGGTACTTTGCACAC+TGG | + | chr4_2:65057357-65057376 | Msa0615590:CDS | 40.0% | |
| TACTTTGCACACTGGATACT+AGG | + | chr4_2:65057365-65057384 | Msa0615590:CDS | 40.0% | |
| ACTTTGCACACTGGATACTA+GGG | + | chr4_2:65057366-65057385 | Msa0615590:CDS | 40.0% | |
| !! | AATGTTGATGATCCCCACAA+GGG | - | chr4_2:65057402-65057421 | None:intergenic | 40.0% |
| !! | AAATGTTGATGATCCCCACA+AGG | - | chr4_2:65057403-65057422 | None:intergenic | 40.0% |
| GGGGATCATCAACATTTACA+CGG | + | chr4_2:65057406-65057425 | Msa0615590:CDS | 40.0% | |
| GGGATCATCAACATTTACAC+GGG | + | chr4_2:65057407-65057426 | Msa0615590:CDS | 40.0% | |
| AGAAAGCAAGGAGTGATTGA+AGG | + | chr4_2:65057548-65057567 | Msa0615590:CDS | 40.0% | |
| ! | GTTGCCTTTGAGGAATATCT+TGG | - | chr4_2:65057601-65057620 | None:intergenic | 40.0% |
| TGTTTGACTAATCACGTGAC+GGG | + | chr4_2:65057678-65057697 | Msa0615590:exon | 40.0% | |
| !! | GATTGTTTCTGGTATGGCAG+AGG | - | chr4_2:65055480-65055499 | None:intergenic | 45.0% |
| GAAACAGTGGGAGAAGCTTA+AGG | + | chr4_2:65055536-65055555 | Msa0615590:five_prime_UTR | 45.0% | |
| CACTCAATGCACAACCTTGA+AGG | + | chr4_2:65055680-65055699 | Msa0615590:CDS | 45.0% | |
| TTGCTTCTATGGGGTTCAGT+TGG | + | chr4_2:65056010-65056029 | Msa0615590:CDS | 45.0% | |
| AAGCAGAACCTGGATCAAGA+AGG | + | chr4_2:65056077-65056096 | Msa0615590:CDS | 45.0% | |
| ATTCTGCTCCTTCTTGATCC+AGG | - | chr4_2:65056088-65056107 | None:intergenic | 45.0% | |
| CTGCATGCATGTTAATCAGC+AGG | + | chr4_2:65056841-65056860 | Msa0615590:intron | 45.0% | |
| TTTGCAGGGGAAAGAAAGAG+AGG | + | chr4_2:65057333-65057352 | Msa0615590:intron | 45.0% | |
| AGGGACAATAGTTTCCCTTG+TGG | + | chr4_2:65057385-65057404 | Msa0615590:CDS | 45.0% | |
| GGGACAATAGTTTCCCTTGT+GGG | + | chr4_2:65057386-65057405 | Msa0615590:CDS | 45.0% | |
| GGACAATAGTTTCCCTTGTG+GGG | + | chr4_2:65057387-65057406 | Msa0615590:CDS | 45.0% | |
| GAGATGTTGCCAATTGCATG+TGG | + | chr4_2:65057632-65057651 | Msa0615590:CDS | 45.0% | |
| GTTTGACTAATCACGTGACG+GGG | + | chr4_2:65057679-65057698 | Msa0615590:exon | 45.0% | |
| !! | AAAATAAAAAAAATAAACAT+TGG | - | chr4_2:65056354-65056373 | None:intergenic | 5.0% |
| GGGTCCAATAAAGCAGAACC+TGG | + | chr4_2:65056067-65056086 | Msa0615590:CDS | 50.0% | |
| TCAGTGCTTCTTGCCACAGT+TGG | + | chr4_2:65056605-65056624 | Msa0615590:CDS | 50.0% | |
| TGACATAGCAGCTCCAACTG+TGG | - | chr4_2:65056621-65056640 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 65055438 | 65058007 | 65055438 | ID=Msa0615590;Name=Msa0615590 |
| chr4_2 | mRNA | 65055438 | 65058007 | 65055438 | ID=Msa0615590-mRNA-1;Parent=Msa0615590;Name=Msa0615590-mRNA-1;_AED=0.08;_eAED=0.08;_QI=177|1|1|1|0.66|0.75|4|319|267 |
| chr4_2 | exon | 65055438 | 65055752 | 65055438 | ID=Msa0615590-mRNA-1:exon:18327;Parent=Msa0615590-mRNA-1 |
| chr4_2 | exon | 65055968 | 65056135 | 65055968 | ID=Msa0615590-mRNA-1:exon:18328;Parent=Msa0615590-mRNA-1 |
| chr4_2 | exon | 65056599 | 65056747 | 65056599 | ID=Msa0615590-mRNA-1:exon:18329;Parent=Msa0615590-mRNA-1 |
| chr4_2 | exon | 65057340 | 65058007 | 65057340 | ID=Msa0615590-mRNA-1:exon:18330;Parent=Msa0615590-mRNA-1 |
| chr4_2 | five_prime_UTR | 65055438 | 65055614 | 65055438 | ID=Msa0615590-mRNA-1:five_prime_utr;Parent=Msa0615590-mRNA-1 |
| chr4_2 | CDS | 65055615 | 65055752 | 65055615 | ID=Msa0615590-mRNA-1:cds;Parent=Msa0615590-mRNA-1 |
| chr4_2 | CDS | 65055968 | 65056135 | 65055968 | ID=Msa0615590-mRNA-1:cds;Parent=Msa0615590-mRNA-1 |
| chr4_2 | CDS | 65056599 | 65056747 | 65056599 | ID=Msa0615590-mRNA-1:cds;Parent=Msa0615590-mRNA-1 |
| chr4_2 | CDS | 65057340 | 65057688 | 65057340 | ID=Msa0615590-mRNA-1:cds;Parent=Msa0615590-mRNA-1 |
| chr4_2 | three_prime_UTR | 65057689 | 65058007 | 65057689 | ID=Msa0615590-mRNA-1:three_prime_utr;Parent=Msa0615590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
