Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0698770 | XP_013457354.1 | 95.522 | 268 | 10 | 1 | 1 | 266 | 1 | 268 | 0.0 | 530 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0698770 | sp|Q0WPS2|B561M_ARATH | 46.099 | 282 | 134 | 5 | 1 | 265 | 1 | 281 | 2.54e-76 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0698770 | A0A072UZZ0 | 95.522 | 268 | 10 | 1 | 1 | 266 | 1 | 268 | 0.0 | 530 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012080 | Msa0698770 | 0.820174 | 7.883478e-53 | -8.615850e-47 |
| Msa0017510 | Msa0698770 | 0.853768 | 1.920947e-61 | -8.615850e-47 |
| Msa0025330 | Msa0698770 | 0.813518 | 2.458195e-51 | -8.615850e-47 |
| Msa0028640 | Msa0698770 | 0.808419 | 3.126267e-50 | -8.615850e-47 |
| Msa0032090 | Msa0698770 | 0.829797 | 4.209819e-55 | -8.615850e-47 |
| Msa0032430 | Msa0698770 | 0.825977 | 3.491626e-54 | -8.615850e-47 |
| Msa0034270 | Msa0698770 | 0.817232 | 3.669434e-52 | -8.615850e-47 |
| Msa0040450 | Msa0698770 | 0.803855 | 2.856801e-49 | -8.615850e-47 |
| Msa0040690 | Msa0698770 | 0.804529 | 2.067915e-49 | -8.615850e-47 |
| Msa0072900 | Msa0698770 | 0.812696 | 3.723186e-51 | -8.615850e-47 |
| Msa0079380 | Msa0698770 | 0.829938 | 3.889182e-55 | -8.615850e-47 |
| Msa0089630 | Msa0698770 | 0.810641 | 1.041969e-50 | -8.615850e-47 |
| Msa0094120 | Msa0698770 | 0.810223 | 1.282776e-50 | -8.615850e-47 |
| Msa0110970 | Msa0698770 | 0.820520 | 6.566899e-53 | -8.615850e-47 |
| Msa0615590 | Msa0698770 | 0.931632 | 2.835173e-94 | -8.615850e-47 |
| Msa0616220 | Msa0698770 | 0.836494 | 9.055504e-57 | -8.615850e-47 |
| Msa0625720 | Msa0698770 | 0.822018 | 2.964562e-53 | -8.615850e-47 |
| Msa0639430 | Msa0698770 | 0.822574 | 2.202616e-53 | -8.615850e-47 |
| Msa0650020 | Msa0698770 | 0.823077 | 1.681697e-53 | -8.615850e-47 |
| Msa0657970 | Msa0698770 | 0.808766 | 2.635755e-50 | -8.615850e-47 |
| Msa0661650 | Msa0698770 | 0.817478 | 3.230440e-52 | -8.615850e-47 |
| Msa0661790 | Msa0698770 | 0.806112 | 9.636206e-50 | -8.615850e-47 |
| Msa0663390 | Msa0698770 | 0.816991 | 4.157145e-52 | -8.615850e-47 |
| Msa0669320 | Msa0698770 | 0.824261 | 8.882009e-54 | -8.615850e-47 |
| Msa0682330 | Msa0698770 | 0.806303 | 8.783047e-50 | -8.615850e-47 |
| Msa0691980 | Msa0698770 | 0.816665 | 4.918889e-52 | -8.615850e-47 |
| Msa0698770 | Msa0699550 | 0.820587 | 6.339280e-53 | -8.615850e-47 |
| Msa0698770 | Msa0708520 | 0.814435 | 1.542907e-51 | -8.615850e-47 |
| Msa0698770 | Msa0727710 | 0.802538 | 5.350527e-49 | -8.615850e-47 |
| Msa0698770 | Msa0745790 | 0.802648 | 5.077651e-49 | -8.615850e-47 |
| Msa0698770 | Msa0785210 | 0.808417 | 3.128513e-50 | -8.615850e-47 |
| Msa0698770 | Msa0796530 | 0.829217 | 5.824843e-55 | -8.615850e-47 |
| Msa0698770 | Msa0824660 | 0.803146 | 4.007311e-49 | -8.615850e-47 |
| Msa0698770 | Msa0824680 | 0.807439 | 5.051834e-50 | -8.615850e-47 |
| Msa0698770 | Msa0850960 | 0.801282 | 9.692544e-49 | -8.615850e-47 |
| Msa0698770 | Msa0861870 | 0.812407 | 4.306972e-51 | -8.615850e-47 |
| Msa0698770 | Msa0871270 | 0.828013 | 1.138375e-54 | -8.615850e-47 |
| Msa0698770 | Msa0880140 | 0.852284 | 5.107182e-61 | -8.615850e-47 |
| Msa0698770 | Msa0902760 | 0.803958 | 2.719477e-49 | -8.615850e-47 |
| Msa0698770 | Msa0920870 | 0.819889 | 9.162884e-53 | -8.615850e-47 |
| Msa0698770 | Msa0938220 | 0.818111 | 2.324117e-52 | -8.615850e-47 |
| Msa0698770 | Msa0959140 | 0.807256 | 5.524371e-50 | -8.615850e-47 |
| Msa0698770 | Msa0959310 | 0.805575 | 1.249282e-49 | -8.615850e-47 |
| Msa0698770 | Msa0965490 | 0.807535 | 4.820342e-50 | -8.615850e-47 |
| Msa0698770 | Msa0975340 | 0.810258 | 1.260719e-50 | -8.615850e-47 |
| Msa0698770 | Msa0979010 | 0.814096 | 1.833586e-51 | -8.615850e-47 |
| Msa0698770 | Msa0994950 | 0.821994 | 3.002976e-53 | -8.615850e-47 |
| Msa0698770 | Msa1003750 | 0.804156 | 2.473327e-49 | -8.615850e-47 |
| Msa0698770 | Msa1004550 | 0.814698 | 1.349570e-51 | -8.615850e-47 |
| Msa0698770 | Msa1004840 | 0.803445 | 3.473718e-49 | -8.615850e-47 |
| Msa0698770 | Msa1013400 | 0.812275 | 4.600901e-51 | -8.615850e-47 |
| Msa0698770 | Msa1014540 | 0.805475 | 1.311230e-49 | -8.615850e-47 |
| Msa0698770 | Msa1023400 | 0.802446 | 5.589916e-49 | -8.615850e-47 |
| Msa0698770 | Msa1082500 | 0.812795 | 3.541047e-51 | -8.615850e-47 |
| Msa0698770 | Msa1085200 | 0.815213 | 1.037498e-51 | -8.615850e-47 |
| Msa0698770 | Msa1093530 | 0.802783 | 4.762455e-49 | -8.615850e-47 |
| Msa0698770 | Msa1147900 | 0.824985 | 5.997952e-54 | -8.615850e-47 |
| Msa0698770 | Msa1151910 | 0.814374 | 1.591371e-51 | -8.615850e-47 |
| Msa0698770 | Msa1182860 | 0.805466 | 1.316829e-49 | -8.615850e-47 |
| Msa0698770 | Msa1209460 | 0.847577 | 1.058913e-59 | -8.615850e-47 |
| Msa0698770 | Msa1218600 | 0.804971 | 1.672300e-49 | -8.615850e-47 |
| Msa0698770 | Msa1222850 | 0.806081 | 9.780939e-50 | -8.615850e-47 |
| Msa0698770 | Msa1238930 | 0.805434 | 1.337189e-49 | -8.615850e-47 |
| Msa0698770 | Msa1264020 | 0.800273 | 1.557371e-48 | -8.615850e-47 |
| Msa0698770 | Msa1272900 | 0.821854 | 3.236368e-53 | -8.615850e-47 |
| Msa0698770 | Msa1280420 | 0.806289 | 8.842852e-50 | -8.615850e-47 |
| Msa0698770 | Msa1283860 | 0.818905 | 1.535586e-52 | -8.615850e-47 |
| Msa0698770 | Msa1292760 | 0.810427 | 1.158729e-50 | -8.615850e-47 |
| Msa0698770 | Msa1302830 | 0.803658 | 3.137623e-49 | -8.615850e-47 |
| Msa0698770 | Msa1320410 | 0.825453 | 4.648153e-54 | -8.615850e-47 |
| Msa0698770 | Msa1338200 | 0.801925 | 7.153314e-49 | -8.615850e-47 |
| Msa0698770 | Msa1346370 | 0.804419 | 2.179701e-49 | -8.615850e-47 |
| Msa0698770 | Msa1366600 | 0.800753 | 1.243154e-48 | -8.615850e-47 |
| Msa0698770 | Msa1367370 | 0.803938 | 2.744656e-49 | -8.615850e-47 |
| Msa0698770 | Msa1370010 | 0.801981 | 6.965315e-49 | -8.615850e-47 |
| Msa0698770 | Msa1371430 | 0.801658 | 8.115086e-49 | -8.615850e-47 |
| Msa0698770 | Msa1374120 | 0.808634 | 2.811929e-50 | -8.615850e-47 |
| Msa0698770 | Msa1415640 | 0.806843 | 6.754696e-50 | -8.615850e-47 |
| Msa0698770 | Msa1423350 | 0.803083 | 4.128379e-49 | -8.615850e-47 |
| Msa0698770 | Msa1423880 | 0.800735 | 1.253467e-48 | -8.615850e-47 |
| Msa0698770 | Msa1442820 | 0.801245 | 9.860732e-49 | -8.615850e-47 |
| Msa0698770 | Msa1466300 | 0.808076 | 3.698891e-50 | -8.615850e-47 |
| Msa0136070 | Msa0698770 | 0.803298 | 3.727236e-49 | -8.615850e-47 |
| Msa0157290 | Msa0698770 | 0.854029 | 1.615101e-61 | -8.615850e-47 |
| Msa0160130 | Msa0698770 | 0.810468 | 1.135406e-50 | -8.615850e-47 |
| Msa0160550 | Msa0698770 | 0.823776 | 1.154592e-53 | -8.615850e-47 |
| Msa0172070 | Msa0698770 | 0.826269 | 2.976579e-54 | -8.615850e-47 |
| Msa0173660 | Msa0698770 | 0.815918 | 7.225838e-52 | -8.615850e-47 |
| Msa0222890 | Msa0698770 | 0.801657 | 8.119548e-49 | -8.615850e-47 |
| Msa0225320 | Msa0698770 | 0.815219 | 1.034097e-51 | -8.615850e-47 |
| Msa0225740 | Msa0698770 | 0.816623 | 5.027979e-52 | -8.615850e-47 |
| Msa0402650 | Msa0698770 | 0.809688 | 1.671706e-50 | -8.615850e-47 |
| Msa0410650 | Msa0698770 | 0.814332 | 1.626055e-51 | -8.615850e-47 |
| Msa0417270 | Msa0698770 | 0.832591 | 8.660431e-56 | -8.615850e-47 |
| Msa0417880 | Msa0698770 | 0.832146 | 1.116519e-55 | -8.615850e-47 |
| Msa0440400 | Msa0698770 | 0.811545 | 6.636529e-51 | -8.615850e-47 |
| Msa0461730 | Msa0698770 | 0.807830 | 4.172616e-50 | -8.615850e-47 |
| Msa0469030 | Msa0698770 | 0.814994 | 1.159965e-51 | -8.615850e-47 |
| Msa0481530 | Msa0698770 | 0.804909 | 1.722646e-49 | -8.615850e-47 |
| Msa0261340 | Msa0698770 | 0.832610 | 8.569388e-56 | -8.615850e-47 |
| Msa0272690 | Msa0698770 | 0.804210 | 2.409349e-49 | -8.615850e-47 |
| Msa0283450 | Msa0698770 | 0.800220 | 1.595989e-48 | -8.615850e-47 |
| Msa0292400 | Msa0698770 | 0.808828 | 2.556264e-50 | -8.615850e-47 |
| Msa0300180 | Msa0698770 | 0.828124 | 1.070121e-54 | -8.615850e-47 |
| Msa0309770 | Msa0698770 | 0.819382 | 1.195779e-52 | -8.615850e-47 |
| Msa0330340 | Msa0698770 | 0.802015 | 6.854500e-49 | -8.615850e-47 |
| Msa0337540 | Msa0698770 | 0.827117 | 1.867731e-54 | -8.615850e-47 |
| Msa0484780 | Msa0698770 | 0.805198 | 1.498550e-49 | -8.615850e-47 |
| Msa0507680 | Msa0698770 | 0.823052 | 1.705005e-53 | -8.615850e-47 |
| Msa0529890 | Msa0698770 | 0.816747 | 4.715622e-52 | -8.615850e-47 |
| Msa0546680 | Msa0698770 | 0.825764 | 3.924328e-54 | -8.615850e-47 |
| Msa0547720 | Msa0698770 | 0.805880 | 1.078040e-49 | -8.615850e-47 |
| Msa0562340 | Msa0698770 | 0.801422 | 9.072017e-49 | -8.615850e-47 |
| Msa0569200 | Msa0698770 | 0.810739 | 9.925178e-51 | -8.615850e-47 |
| Msa0585560 | Msa0698770 | 0.807479 | 4.954212e-50 | -8.615850e-47 |
| Msa0601750 | Msa0698770 | 0.814205 | 1.734907e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0698770 | MtrunA17_Chr4g0052201 | 95.522 | 268 | 10 | 1 | 1 | 266 | 1 | 268 | 0.0 | 530 |
| Msa0698770 | MtrunA17_Chr3g0096101 | 48.936 | 235 | 105 | 5 | 18 | 251 | 24 | 244 | 5.40e-66 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0698770 | AT4G18260.1 | 46.099 | 282 | 134 | 5 | 1 | 265 | 1 | 281 | 2.59e-77 | 236 |
| Msa0698770 | AT2G30890.1 | 47.368 | 190 | 100 | 0 | 35 | 224 | 33 | 222 | 2.19e-59 | 189 |
| Msa0698770 | AT4G17280.1 | 27.461 | 193 | 119 | 5 | 57 | 237 | 218 | 401 | 5.41e-12 | 65.9 |
Find 67 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTAAGATATGATTGTTTC+TGG | 0.134092 | 4_4:+69159385 | None:intergenic |
| TGATCCAGGTTCTGCTTTAT+TGG | 0.158743 | 4_4:+69158688 | None:intergenic |
| CATTACATGGATTGCTTCTA+TGG | 0.160282 | 4_4:-69158760 | Msa0698770:CDS |
| TTATCTCTTCCAAGACAAAT+TGG | 0.252783 | 4_4:-69157268 | Msa0698770:CDS |
| AGATTAGGTCTAGCACTTTA+TGG | 0.256796 | 4_4:-69158105 | Msa0698770:CDS |
| GAAAGAAAGAGAGGAGTTAT+TGG | 0.266562 | 4_4:-69157443 | Msa0698770:CDS |
| GATAATAACCATCAAAGATT+AGG | 0.351198 | 4_4:-69158120 | Msa0698770:CDS |
| GTGCTAGACCTAATCTTTGA+TGG | 0.351725 | 4_4:+69158112 | None:intergenic |
| GTTGGATTCTTAATGCCTCT+TGG | 0.356042 | 4_4:-69158731 | Msa0698770:CDS |
| TACTTTGCACACTGGATACT+AGG | 0.365036 | 4_4:-69157420 | Msa0698770:CDS |
| CACTCAATGCACAACCTTGA+AGG | 0.378313 | 4_4:-69159193 | Msa0698770:CDS |
| CTTGGGATACTTACAATTAG+AGG | 0.385390 | 4_4:-69158713 | Msa0698770:CDS |
| TTACATCTTGATTAGGCTGT+TGG | 0.389458 | 4_4:-69156990 | Msa0698770:three_prime_UTR |
| TTGGATTCTTAATGCCTCTT+GGG | 0.391863 | 4_4:-69158730 | Msa0698770:CDS |
| ATACTTGTGCAAGCTTTCAT+TGG | 0.402865 | 4_4:-69158078 | Msa0698770:CDS |
| GAAACAGTGGGAGAAGCTTA+AGG | 0.403693 | 4_4:-69159337 | Msa0698770:five_prime_UTR |
| GTTGCCTTTGAGGAATATCT+TGG | 0.404336 | 4_4:+69157187 | None:intergenic |
| TTTATCTTTCCACATGCAAT+TGG | 0.411092 | 4_4:+69157144 | None:intergenic |
| AAACTGATTCACTTCCTTCA+AGG | 0.412265 | 4_4:+69159179 | None:intergenic |
| ATTCTGCTCCTTCTTGATCC+AGG | 0.424374 | 4_4:+69158674 | None:intergenic |
| TCAGTGCTTCTTGCCACAGT+TGG | 0.425538 | 4_4:-69158180 | Msa0698770:CDS |
| TTGCTTCTATGGGGTTCAGT+TGG | 0.452928 | 4_4:-69158749 | Msa0698770:CDS |
| TCATATATTCCAATTTGTCT+TGG | 0.455113 | 4_4:+69157259 | None:intergenic |
| GGGACAATAGTTTCCCTTGT+GGG | 0.457433 | 4_4:-69157399 | Msa0698770:CDS |
| TGTTGCTGTGTTATTGTGCT+AGG | 0.468581 | 4_4:-69159284 | Msa0698770:five_prime_UTR |
| AAACAGTGGGAGAAGCTTAA+GGG | 0.476795 | 4_4:-69159336 | Msa0698770:five_prime_UTR |
| AGAAAGCAAGGAGTGATTGA+AGG | 0.481400 | 4_4:-69157237 | Msa0698770:CDS |
| ATTACATGGATTGCTTCTAT+GGG | 0.484467 | 4_4:-69158759 | Msa0698770:CDS |
| TCAAAGGCAACAAAATCAAA+AGG | 0.490057 | 4_4:-69157175 | Msa0698770:CDS |
| TGTTTGACTAATCACGTGAC+GGG | 0.490630 | 4_4:-69157107 | Msa0698770:exon |
| AGATATGATTGTTTCTGGTA+TGG | 0.491841 | 4_4:+69159390 | None:intergenic |
| AAGGTTGTGCATTGAGTGAA+AGG | 0.493149 | 4_4:+69159198 | None:intergenic |
| CTTTGTTATTTGTGTTCCTG+TGG | 0.515228 | 4_4:+69159151 | None:intergenic |
| TTTGCAGGGGAAAGAAAGAG+AGG | 0.525844 | 4_4:-69157452 | Msa0698770:intron |
| TGTCAAATCTCACTAGATCA+TGG | 0.529019 | 4_4:+69157068 | None:intergenic |
| GATTGTTTCTGGTATGGCAG+AGG | 0.549951 | 4_4:+69159396 | None:intergenic |
| TGAATCAGTTTAACAGCCAC+AGG | 0.550927 | 4_4:-69159167 | Msa0698770:CDS |
| GCATGCACTTTATATGTAAG+TGG | 0.551708 | 4_4:-69156938 | Msa0698770:three_prime_UTR |
| TTGGAATATATGAGAAAGCA+AGG | 0.553151 | 4_4:-69157249 | Msa0698770:CDS |
| ATTGTTTCTGGTATGGCAGA+GGG | 0.555543 | 4_4:+69159397 | None:intergenic |
| CAAAACTCAGAGAGAAACAG+TGG | 0.556146 | 4_4:-69159350 | Msa0698770:five_prime_UTR |
| TTGGGATACTTACAATTAGA+GGG | 0.558079 | 4_4:-69158712 | Msa0698770:CDS |
| CACAAATAACAAAGTTCACA+AGG | 0.567973 | 4_4:-69159142 | Msa0698770:intron |
| GCATCAGATATAGCATTACA+TGG | 0.577510 | 4_4:-69158773 | Msa0698770:CDS |
| GGGTCCAATAAAGCAGAACC+TGG | 0.582617 | 4_4:-69158692 | Msa0698770:CDS |
| CATGCACTTTATATGTAAGT+GGG | 0.583363 | 4_4:-69156937 | Msa0698770:three_prime_UTR |
| GTTATTGGTACTTTGCACAC+TGG | 0.583701 | 4_4:-69157428 | Msa0698770:CDS |
| TTGTTTGACTAATCACGTGA+CGG | 0.584500 | 4_4:-69157108 | Msa0698770:exon |
| GCAACACAAAACTACGTACA+AGG | 0.590228 | 4_4:+69159301 | None:intergenic |
| ACTTTGCACACTGGATACTA+GGG | 0.594151 | 4_4:-69157419 | Msa0698770:CDS |
| GGACAATAGTTTCCCTTGTG+GGG | 0.599488 | 4_4:-69157398 | Msa0698770:CDS |
| GGGGATCATCAACATTTACA+CGG | 0.604072 | 4_4:-69157379 | Msa0698770:CDS |
| TGTGGAAAGATAAATGCACT+TGG | 0.614446 | 4_4:-69157135 | Msa0698770:CDS |
| AAGCAGAACCTGGATCAAGA+AGG | 0.617858 | 4_4:-69158682 | Msa0698770:CDS |
| CTTACCAAGATATTCCTCAA+AGG | 0.620966 | 4_4:-69157191 | Msa0698770:CDS |
| GGGATCATCAACATTTACAC+GGG | 0.632584 | 4_4:-69157378 | Msa0698770:CDS |
| TTACATGGATTGCTTCTATG+GGG | 0.637280 | 4_4:-69158758 | Msa0698770:CDS |
| AAAACTCAGAGAGAAACAGT+GGG | 0.651101 | 4_4:-69159349 | Msa0698770:five_prime_UTR |
| TGACATAGCAGCTCCAACTG+TGG | 0.651797 | 4_4:+69158167 | None:intergenic |
| GAGATGTTGCCAATTGCATG+TGG | 0.663285 | 4_4:-69157153 | Msa0698770:CDS |
| ACATGACCTGAAAAGCAACA+TGG | 0.664285 | 4_4:+69158639 | None:intergenic |
| AAATGTTGATGATCCCCACA+AGG | 0.667752 | 4_4:+69157385 | None:intergenic |
| AGGGACAATAGTTTCCCTTG+TGG | 0.671953 | 4_4:-69157400 | Msa0698770:CDS |
| TATTAATGAATTAACCTGTG+AGG | 0.677038 | 4_4:+69158045 | None:intergenic |
| CTAATTGTAAGTATCCCAAG+AGG | 0.677745 | 4_4:+69158716 | None:intergenic |
| AATGTTGATGATCCCCACAA+GGG | 0.682717 | 4_4:+69157386 | None:intergenic |
| GTTTGACTAATCACGTGACG+GGG | 0.714504 | 4_4:-69157106 | Msa0698770:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGAAAAAGAAAAAAAAAA+AGG | - | chr4_4:69159210-69159229 | Msa0698770:CDS | 10.0% |
| !!! | GTTTAACAACAATTTTAAAT+TGG | - | chr4_4:69157201-69157220 | Msa0698770:CDS | 15.0% |
| !!! | TTTTAAATTGGTGAATAAAT+CGG | - | chr4_4:69157213-69157232 | Msa0698770:CDS | 15.0% |
| !!! | TTTTAATCAACAAGAATTAA+TGG | + | chr4_4:69157631-69157650 | None:intergenic | 15.0% |
| !! | AGAAATACAGAAAATTAAAA+TGG | + | chr4_4:69158275-69158294 | None:intergenic | 15.0% |
| !!! | TAATTTTTCACTTTAGTTTT+TGG | - | chr4_4:69159275-69159294 | Msa0698770:exon | 15.0% |
| !!! | ATGAATTATGATTTTATGAA+AGG | - | chr4_4:69159325-69159344 | Msa0698770:five_prime_UTR | 15.0% |
| !!! | TTTTAAAGTGTGTTAATGAA+GGG | + | chr4_4:69156817-69156836 | None:intergenic | 20.0% |
| !!! | TCATTTTATTAACCACAAAT+CGG | + | chr4_4:69157269-69157288 | None:intergenic | 20.0% |
| !! | ATAGTGTTAAATTATCTTAG+TGG | - | chr4_4:69157701-69157720 | Msa0698770:intron | 20.0% |
| !!! | TTTTTAGCCTAAAAATAACA+AGG | + | chr4_4:69158398-69158417 | None:intergenic | 20.0% |
| !!! | TAGTTTCTCATAATTTTCAA+CGG | - | chr4_4:69158427-69158446 | Msa0698770:intron | 20.0% |
| !! | ATATTAAAACATTACAGTGT+AGG | + | chr4_4:69158734-69158753 | None:intergenic | 20.0% |
| !!! | ACACTGTAATGTTTTAATAT+AGG | - | chr4_4:69158734-69158753 | Msa0698770:CDS | 20.0% |
| !!! | CACTGTAATGTTTTAATATA+GGG | - | chr4_4:69158735-69158754 | Msa0698770:CDS | 20.0% |
| !! | AATATTCTAATTGAATTTGC+AGG | - | chr4_4:69158770-69158789 | Msa0698770:CDS | 20.0% |
| !! | ATATTCTAATTGAATTTGCA+GGG | - | chr4_4:69158771-69158790 | Msa0698770:CDS | 20.0% |
| !!! | TTTTCTATTACATCTTGATT+AGG | - | chr4_4:69159240-69159259 | Msa0698770:CDS | 20.0% |
| !!! | CTTTTAAAGTGTGTTAATGA+AGG | + | chr4_4:69156818-69156837 | None:intergenic | 25.0% |
| !!! | CTTTAAGATATGATTGTTTC+TGG | + | chr4_4:69156855-69156874 | None:intergenic | 25.0% |
| ! | NNNNNATCACTGCTAAAAAC+TGG | + | chr4_4:69157292-69157311 | None:intergenic | 25.0% |
| ! | TTTGTTAAAAACTTGACAAG+TGG | - | chr4_4:69157677-69157696 | Msa0698770:intron | 25.0% |
| !!! | ACTTGCTTTAACTTTTATAG+TGG | - | chr4_4:69157775-69157794 | Msa0698770:intron | 25.0% |
| !!! | GTAGTTTTTTTTAAGCTCTT+TGG | - | chr4_4:69157951-69157970 | Msa0698770:intron | 25.0% |
| !! | TTTTTACAATGAGGATAGAA+AGG | + | chr4_4:69158008-69158027 | None:intergenic | 25.0% |
| !!! | GTTAGACTATTTTTACAATG+AGG | + | chr4_4:69158017-69158036 | None:intergenic | 25.0% |
| ! | GATAATAACCATCAAAGATT+AGG | - | chr4_4:69158117-69158136 | Msa0698770:CDS | 25.0% |
| ! | TATTAATGAATTAACCTGTG+AGG | + | chr4_4:69158195-69158214 | None:intergenic | 25.0% |
| !!! | GGATTTATTAGCTTTATATG+AGG | + | chr4_4:69158224-69158243 | None:intergenic | 25.0% |
| !!! | AGGGAAAACTTTAGAATATT+TGG | - | chr4_4:69158313-69158332 | Msa0698770:intron | 25.0% |
| ! | TGTGATGACTAATAAAAAAC+AGG | + | chr4_4:69158366-69158385 | None:intergenic | 25.0% |
| !!! | ATTGTTGCCTTGTTATTTTT+AGG | - | chr4_4:69158388-69158407 | Msa0698770:intron | 25.0% |
| !! | AGTTTCTCATAATTTTCAAC+GGG | - | chr4_4:69158428-69158447 | Msa0698770:intron | 25.0% |
| ! | CCTTTCAAATATCTATGTAT+AGG | + | chr4_4:69158558-69158577 | None:intergenic | 25.0% |
| ! | CCTATACATAGATATTTGAA+AGG | - | chr4_4:69158555-69158574 | Msa0698770:intron | 25.0% |
| ! | TATTCTAATTGAATTTGCAG+GGG | - | chr4_4:69158772-69158791 | Msa0698770:CDS | 25.0% |
| ! | TCATATATTCCAATTTGTCT+TGG | + | chr4_4:69158981-69159000 | None:intergenic | 25.0% |
| !! | AGATATGATTGTTTCTGGTA+TGG | + | chr4_4:69156850-69156869 | None:intergenic | 30.0% |
| CACAAATAACAAAGTTCACA+AGG | - | chr4_4:69157095-69157114 | Msa0698770:three_prime_UTR | 30.0% | |
| CCAGTACGTACTTATAATAA+AGG | + | chr4_4:69157414-69157433 | None:intergenic | 30.0% | |
| CCTTTATTATAAGTACGTAC+TGG | - | chr4_4:69157411-69157430 | Msa0698770:CDS | 30.0% | |
| TTATTATAAGTACGTACTGG+TGG | - | chr4_4:69157414-69157433 | Msa0698770:CDS | 30.0% | |
| ! | ATTACATGGATTGCTTCTAT+GGG | - | chr4_4:69157478-69157497 | Msa0698770:intron | 30.0% |
| TTGGGATACTTACAATTAGA+GGG | - | chr4_4:69157525-69157544 | Msa0698770:intron | 30.0% | |
| ATGAGGATAGAAAGGTAAAA+AGG | + | chr4_4:69158000-69158019 | None:intergenic | 30.0% | |
| TACTATGAAGTTTGTGTTGT+TGG | + | chr4_4:69158245-69158264 | None:intergenic | 30.0% | |
| TCCTCAAACTTTCATACAAA+GGG | + | chr4_4:69158513-69158532 | None:intergenic | 30.0% | |
| !! | CCAAAACAATGTGCTTTTTA+AGG | + | chr4_4:69158908-69158927 | None:intergenic | 30.0% |
| !! | CCTTAAAAAGCACATTGTTT+TGG | - | chr4_4:69158905-69158924 | Msa0698770:intron | 30.0% |
| !! | TTGGACTATACTTTTTACAG+TGG | - | chr4_4:69158924-69158943 | Msa0698770:intron | 30.0% |
| TTATCTCTTCCAAGACAAAT+TGG | - | chr4_4:69158969-69158988 | Msa0698770:intron | 30.0% | |
| TTGGAATATATGAGAAAGCA+AGG | - | chr4_4:69158988-69159007 | Msa0698770:intron | 30.0% | |
| !!! | TTTTGATTTTGTTGCCTTTG+AGG | + | chr4_4:69159063-69159082 | None:intergenic | 30.0% |
| TCAAAGGCAACAAAATCAAA+AGG | - | chr4_4:69159062-69159081 | Msa0698770:intron | 30.0% | |
| TTTATCTTTCCACATGCAAT+TGG | + | chr4_4:69159096-69159115 | None:intergenic | 30.0% | |
| CATGCACTTTATATGTAAGT+GGG | - | chr4_4:69159300-69159319 | Msa0698770:five_prime_UTR | 30.0% | |
| AAAACTCAGAGAGAAACAGT+GGG | - | chr4_4:69156888-69156907 | Msa0698770:three_prime_UTR | 35.0% | |
| ! | AAACTGATTCACTTCCTTCA+AGG | + | chr4_4:69157061-69157080 | None:intergenic | 35.0% |
| !! | CTTTGTTATTTGTGTTCCTG+TGG | + | chr4_4:69157089-69157108 | None:intergenic | 35.0% |
| !! | TCAATTTAGTGACCGATTTG+TGG | - | chr4_4:69157254-69157273 | Msa0698770:CDS | 35.0% |
| GCATCAGATATAGCATTACA+TGG | - | chr4_4:69157464-69157483 | Msa0698770:intron | 35.0% | |
| ! | CATTACATGGATTGCTTCTA+TGG | - | chr4_4:69157477-69157496 | Msa0698770:intron | 35.0% |
| ! | TTACATGGATTGCTTCTATG+GGG | - | chr4_4:69157479-69157498 | Msa0698770:intron | 35.0% |
| TTGGATTCTTAATGCCTCTT+GGG | - | chr4_4:69157507-69157526 | Msa0698770:intron | 35.0% | |
| CTAATTGTAAGTATCCCAAG+AGG | + | chr4_4:69157524-69157543 | None:intergenic | 35.0% | |
| CTTGGGATACTTACAATTAG+AGG | - | chr4_4:69157524-69157543 | Msa0698770:intron | 35.0% | |
| !!! | CTATTTCCATGTTGCTTTTC+AGG | - | chr4_4:69157592-69157611 | Msa0698770:intron | 35.0% |
| GAACTATAAGTCGTCTACAT+TGG | - | chr4_4:69157920-69157939 | Msa0698770:intron | 35.0% | |
| AGATTAGGTCTAGCACTTTA+TGG | - | chr4_4:69158132-69158151 | Msa0698770:CDS | 35.0% | |
| ATACTTGTGCAAGCTTTCAT+TGG | - | chr4_4:69158159-69158178 | Msa0698770:CDS | 35.0% | |
| ! | AGCTCCTCATATTTTCATGT+TGG | - | chr4_4:69158475-69158494 | Msa0698770:intron | 35.0% |
| ! | GCTCCTCATATTTTCATGTT+GGG | - | chr4_4:69158476-69158495 | Msa0698770:intron | 35.0% |
| ! | CTCCTCATATTTTCATGTTG+GGG | - | chr4_4:69158477-69158496 | Msa0698770:intron | 35.0% |
| TCCCTTTGTATGAAAGTTTG+AGG | - | chr4_4:69158509-69158528 | Msa0698770:intron | 35.0% | |
| GTCCTCAAACTTTCATACAA+AGG | + | chr4_4:69158514-69158533 | None:intergenic | 35.0% | |
| GAAAGAAAGAGAGGAGTTAT+TGG | - | chr4_4:69158794-69158813 | Msa0698770:intron | 35.0% | |
| !! | ACAGTGGAAGTCTTTTTCAT+TGG | - | chr4_4:69158940-69158959 | Msa0698770:intron | 35.0% |
| CTTACCAAGATATTCCTCAA+AGG | - | chr4_4:69159046-69159065 | Msa0698770:intron | 35.0% | |
| TGTGGAAAGATAAATGCACT+TGG | - | chr4_4:69159102-69159121 | Msa0698770:intron | 35.0% | |
| TTGTTTGACTAATCACGTGA+CGG | - | chr4_4:69159129-69159148 | Msa0698770:intron | 35.0% | |
| TGTCAAATCTCACTAGATCA+TGG | + | chr4_4:69159172-69159191 | None:intergenic | 35.0% | |
| TTACATCTTGATTAGGCTGT+TGG | - | chr4_4:69159247-69159266 | Msa0698770:CDS | 35.0% | |
| GCATGCACTTTATATGTAAG+TGG | - | chr4_4:69159299-69159318 | Msa0698770:five_prime_UTR | 35.0% | |
| !! | ATTGTTTCTGGTATGGCAGA+GGG | + | chr4_4:69156843-69156862 | None:intergenic | 40.0% |
| CAAAACTCAGAGAGAAACAG+TGG | - | chr4_4:69156887-69156906 | Msa0698770:three_prime_UTR | 40.0% | |
| AAACAGTGGGAGAAGCTTAA+GGG | - | chr4_4:69156901-69156920 | Msa0698770:three_prime_UTR | 40.0% | |
| GCAACACAAAACTACGTACA+AGG | + | chr4_4:69156939-69156958 | None:intergenic | 40.0% | |
| ! | TGTTGCTGTGTTATTGTGCT+AGG | - | chr4_4:69156953-69156972 | Msa0698770:three_prime_UTR | 40.0% |
| AAGGTTGTGCATTGAGTGAA+AGG | + | chr4_4:69157042-69157061 | None:intergenic | 40.0% | |
| TGAATCAGTTTAACAGCCAC+AGG | - | chr4_4:69157070-69157089 | Msa0698770:three_prime_UTR | 40.0% | |
| GCTAACTATCTAGCAGCTAT+TGG | - | chr4_4:69157179-69157198 | Msa0698770:CDS | 40.0% | |
| ! | GTACTGGTGGTTAATATAGC+AGG | - | chr4_4:69157427-69157446 | Msa0698770:CDS | 40.0% |
| GTTGGATTCTTAATGCCTCT+TGG | - | chr4_4:69157506-69157525 | Msa0698770:intron | 40.0% | |
| TGATCCAGGTTCTGCTTTAT+TGG | + | chr4_4:69157552-69157571 | None:intergenic | 40.0% | |
| ACATGACCTGAAAAGCAACA+TGG | + | chr4_4:69157601-69157620 | None:intergenic | 40.0% | |
| GTGCTAGACCTAATCTTTGA+TGG | + | chr4_4:69158128-69158147 | None:intergenic | 40.0% | |
| !! | TTGGATTTTTCAGACCTCAC+AGG | - | chr4_4:69158178-69158197 | Msa0698770:CDS | 40.0% |
| TGCATGCATGTTAATCAGCA+GGG | - | chr4_4:69158294-69158313 | Msa0698770:intron | 40.0% | |
| GTCCCCAACATGAAAATATG+AGG | + | chr4_4:69158482-69158501 | None:intergenic | 40.0% | |
| GTTATTGGTACTTTGCACAC+TGG | - | chr4_4:69158809-69158828 | Msa0698770:intron | 40.0% | |
| TACTTTGCACACTGGATACT+AGG | - | chr4_4:69158817-69158836 | Msa0698770:intron | 40.0% | |
| ACTTTGCACACTGGATACTA+GGG | - | chr4_4:69158818-69158837 | Msa0698770:intron | 40.0% | |
| !! | AATGTTGATGATCCCCACAA+GGG | + | chr4_4:69158854-69158873 | None:intergenic | 40.0% |
| !! | AAATGTTGATGATCCCCACA+AGG | + | chr4_4:69158855-69158874 | None:intergenic | 40.0% |
| GGGGATCATCAACATTTACA+CGG | - | chr4_4:69158858-69158877 | Msa0698770:intron | 40.0% | |
| GGGATCATCAACATTTACAC+GGG | - | chr4_4:69158859-69158878 | Msa0698770:intron | 40.0% | |
| AGAAAGCAAGGAGTGATTGA+AGG | - | chr4_4:69159000-69159019 | Msa0698770:intron | 40.0% | |
| ! | GTTGCCTTTGAGGAATATCT+TGG | + | chr4_4:69159053-69159072 | None:intergenic | 40.0% |
| TGTTTGACTAATCACGTGAC+GGG | - | chr4_4:69159130-69159149 | Msa0698770:intron | 40.0% | |
| !! | GATTGTTTCTGGTATGGCAG+AGG | + | chr4_4:69156844-69156863 | None:intergenic | 45.0% |
| GAAACAGTGGGAGAAGCTTA+AGG | - | chr4_4:69156900-69156919 | Msa0698770:three_prime_UTR | 45.0% | |
| CACTCAATGCACAACCTTGA+AGG | - | chr4_4:69157044-69157063 | Msa0698770:three_prime_UTR | 45.0% | |
| TTGCTTCTATGGGGTTCAGT+TGG | - | chr4_4:69157488-69157507 | Msa0698770:intron | 45.0% | |
| AAGCAGAACCTGGATCAAGA+AGG | - | chr4_4:69157555-69157574 | Msa0698770:intron | 45.0% | |
| ATTCTGCTCCTTCTTGATCC+AGG | + | chr4_4:69157566-69157585 | None:intergenic | 45.0% | |
| CTGCATGCATGTTAATCAGC+AGG | - | chr4_4:69158293-69158312 | Msa0698770:intron | 45.0% | |
| TTTGCAGGGGAAAGAAAGAG+AGG | - | chr4_4:69158785-69158804 | Msa0698770:CDS | 45.0% | |
| AGGGACAATAGTTTCCCTTG+TGG | - | chr4_4:69158837-69158856 | Msa0698770:intron | 45.0% | |
| GGGACAATAGTTTCCCTTGT+GGG | - | chr4_4:69158838-69158857 | Msa0698770:intron | 45.0% | |
| GGACAATAGTTTCCCTTGTG+GGG | - | chr4_4:69158839-69158858 | Msa0698770:intron | 45.0% | |
| GAGATGTTGCCAATTGCATG+TGG | - | chr4_4:69159084-69159103 | Msa0698770:intron | 45.0% | |
| GTTTGACTAATCACGTGACG+GGG | - | chr4_4:69159131-69159150 | Msa0698770:intron | 45.0% | |
| !! | AAAATAAAAAAAATAAACAT+TGG | + | chr4_4:69157806-69157825 | None:intergenic | 5.0% |
| GGGTCCAATAAAGCAGAACC+TGG | - | chr4_4:69157545-69157564 | Msa0698770:intron | 50.0% | |
| TCAGTGCTTCTTGCCACAGT+TGG | - | chr4_4:69158057-69158076 | Msa0698770:intron | 50.0% | |
| TGACATAGCAGCTCCAACTG+TGG | + | chr4_4:69158073-69158092 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 69156802 | 69159457 | 69156802 | ID=Msa0698770;Name=Msa0698770 |
| chr4_4 | mRNA | 69156802 | 69159457 | 69156802 | ID=Msa0698770-mRNA-1;Parent=Msa0698770;Name=Msa0698770-mRNA-1;_AED=0.08;_eAED=0.08;_QI=177|1|1|1|1|1|4|317|266 |
| chr4_4 | exon | 69156802 | 69157467 | 69156802 | ID=Msa0698770-mRNA-1:exon:20707;Parent=Msa0698770-mRNA-1 |
| chr4_4 | exon | 69158060 | 69158208 | 69158060 | ID=Msa0698770-mRNA-1:exon:20706;Parent=Msa0698770-mRNA-1 |
| chr4_4 | exon | 69158646 | 69158810 | 69158646 | ID=Msa0698770-mRNA-1:exon:20705;Parent=Msa0698770-mRNA-1 |
| chr4_4 | exon | 69159143 | 69159457 | 69159143 | ID=Msa0698770-mRNA-1:exon:20704;Parent=Msa0698770-mRNA-1 |
| chr4_4 | five_prime_UTR | 69159281 | 69159457 | 69159281 | ID=Msa0698770-mRNA-1:five_prime_utr;Parent=Msa0698770-mRNA-1 |
| chr4_4 | CDS | 69159143 | 69159280 | 69159143 | ID=Msa0698770-mRNA-1:cds;Parent=Msa0698770-mRNA-1 |
| chr4_4 | CDS | 69158646 | 69158810 | 69158646 | ID=Msa0698770-mRNA-1:cds;Parent=Msa0698770-mRNA-1 |
| chr4_4 | CDS | 69158060 | 69158208 | 69158060 | ID=Msa0698770-mRNA-1:cds;Parent=Msa0698770-mRNA-1 |
| chr4_4 | CDS | 69157119 | 69157467 | 69157119 | ID=Msa0698770-mRNA-1:cds;Parent=Msa0698770-mRNA-1 |
| chr4_4 | three_prime_UTR | 69156802 | 69157118 | 69156802 | ID=Msa0698770-mRNA-1:three_prime_utr;Parent=Msa0698770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
