AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1373930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1373930 MtrunA17_Chr7g0260701 94.853 136 7 0 1 136 1 136 5.77e-83 239
Msa1373930 MtrunA17_Chr1g0184761 73.984 123 31 1 15 136 15 137 2.76e-52 162
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1373930 AT2G30570.1 57.664 137 53 3 1 136 1 133 2.36e-43 139

Find 69 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGATGAGGATGAAGATTC+TGG 0.217541 tig0019464:-102018 Msa1373930:CDS
TGGATCTTGTTTGGTGTCTT+TGG 0.223893 tig0019464:-102078 Msa1373930:CDS
AGCAGATTCTTTCTTTGTTA+TGG 0.226925 tig0019464:-101862 Msa1373930:three_prime_UTR
TTCTAAGGTGCATATCCTTC+TGG 0.231560 tig0019464:+101978 None:intergenic
TTGGTGTCTTTGGTCTTATA+TGG 0.276875 tig0019464:-102068 Msa1373930:CDS
GAATCTACATTCAAGGAAAA+TGG 0.279162 tig0019464:-102503 Msa1373930:exon
CTTCTTGGTTGGATCTTGTT+TGG 0.292250 tig0019464:-102087 Msa1373930:CDS
GGACTTAGCAACAATCTTCT+TGG 0.299425 tig0019464:-102102 Msa1373930:CDS
CTTCCAACCTTAGCTATTGA+TGG 0.334379 tig0019464:+102291 None:intergenic
CAAATCAATTTGTGGGTTCA+TGG 0.342909 tig0019464:-101821 Msa1373930:three_prime_UTR
GACCTGCTTCCTTGCACATC+AGG 0.343789 tig0019464:+102243 None:intergenic
ATTTGCTTAATTCAGACAAA+TGG 0.346148 tig0019464:+102553 None:intergenic
TAGATTCAGGTATGAGAGTA+TGG 0.356495 tig0019464:+102519 None:intergenic
GAAGGAACTGGCCTTCCCTT+TGG 0.386325 tig0019464:-102123 Msa1373930:CDS
TCTAAGGTGCATATCCTTCT+GGG 0.390166 tig0019464:+101979 None:intergenic
ACTGAACTGTGCAATTTCTA+AGG 0.404366 tig0019464:+101963 None:intergenic
GATGTATCAAATCAATTTGT+GGG 0.406541 tig0019464:-101828 Msa1373930:three_prime_UTR
TCTACCAAAGCCATGGCTGC+TGG 0.411412 tig0019464:+102162 None:intergenic
TGTTGAGGTGCCAGCAATAA+TGG 0.413871 tig0019464:+102477 None:intergenic
AAAACTTACCAACAATGGTC+TGG 0.428853 tig0019464:+102401 None:intergenic
CATACCTGAATCTACATTCA+AGG 0.434806 tig0019464:-102510 Msa1373930:five_prime_UTR
TTTGCTTAATTCAGACAAAT+GGG 0.434827 tig0019464:+102554 None:intergenic
TAGACTGAATAATTGAAATC+AGG 0.442923 tig0019464:+101717 None:intergenic
AAAATGGCAACCATTATTGC+TGG 0.451832 tig0019464:-102487 Msa1373930:CDS
AAGCCCAGCAGCCATGGCTT+TGG 0.453307 tig0019464:-102166 Msa1373930:CDS
TAATATTAGTTTATTAGCAT+TGG 0.456037 tig0019464:+102588 None:intergenic
TGATGTATCAAATCAATTTG+TGG 0.461243 tig0019464:-101829 Msa1373930:three_prime_UTR
TTAGCAACAATCTTCTTGGT+TGG 0.463955 tig0019464:-102098 Msa1373930:CDS
TTTGTGCACAAGCAACCTCT+TGG 0.465311 tig0019464:-102433 Msa1373930:CDS
AGAATGAGCACTGAAGGAAC+TGG 0.491605 tig0019464:-102135 Msa1373930:CDS
CTACCAAAGCCATGGCTGCT+GGG 0.492560 tig0019464:+102163 None:intergenic
AGCAGAGATAGCTGCTATCA+AGG 0.498626 tig0019464:+102200 None:intergenic
TTGATGAGGATGAAGATTCT+GGG 0.502222 tig0019464:-102017 Msa1373930:CDS
AGCAGGTCAAACATAGGAAT+GGG 0.505396 tig0019464:-102228 Msa1373930:CDS
AAATCAATTTGTGGGTTCAT+GGG 0.506046 tig0019464:-101820 Msa1373930:three_prime_UTR
CAGAATCTTCATCCTCATCA+AGG 0.515447 tig0019464:+102019 None:intergenic
GTCCCATCCCAGACCATTGT+TGG 0.518566 tig0019464:-102409 Msa1373930:intron
AACCTGATGTGCAAGGAAGC+AGG 0.522854 tig0019464:-102245 Msa1373930:CDS
CTTGTCAAGCCCAGCAGCCA+TGG 0.525662 tig0019464:-102172 Msa1373930:CDS
CTAAGGTGCATATCCTTCTG+GGG 0.530728 tig0019464:+101980 None:intergenic
AGAGTGAGATGTTCCATTGA+GGG 0.532339 tig0019464:-102270 Msa1373930:CDS
AAACTTACCAACAATGGTCT+GGG 0.543127 tig0019464:+102402 None:intergenic
AAGCAGGTCAAACATAGGAA+TGG 0.548495 tig0019464:-102229 Msa1373930:CDS
AAGATTGTTGCTAAGTCCAA+AGG 0.554462 tig0019464:+102107 None:intergenic
CTACGCTTCCTCCCTTGATG+AGG 0.562437 tig0019464:-102031 Msa1373930:CDS
TACCAACAATGGTCTGGGAT+GGG 0.563076 tig0019464:+102407 None:intergenic
TTGCCATCAATAGCTAAGGT+TGG 0.567060 tig0019464:-102294 Msa1373930:CDS
AGATTGTTGCTAAGTCCAAA+GGG 0.569327 tig0019464:+102108 None:intergenic
TTACCAACAATGGTCTGGGA+TGG 0.569922 tig0019464:+102406 None:intergenic
ACATCTTCAATCATCCGCAC+AGG 0.569929 tig0019464:-102457 Msa1373930:CDS
GATGAGAGAATGAGCACTGA+AGG 0.576075 tig0019464:-102141 Msa1373930:CDS
CATGGCTGCTGGGCTTGACA+AGG 0.577276 tig0019464:+102173 None:intergenic
AGGATTGCCATCAATAGCTA+AGG 0.584181 tig0019464:-102298 Msa1373930:CDS
AAGAGTGAGATGTTCCATTG+AGG 0.585764 tig0019464:-102271 Msa1373930:CDS
CAAGGAAGCAGGTCAAACAT+AGG 0.586835 tig0019464:-102234 Msa1373930:CDS
ATCCACGCTGTGTGGTGCAT+AGG 0.592101 tig0019464:-102622 Msa1373930:five_prime_UTR
TGTCTCTATAAAACCCCAGA+AGG 0.597060 tig0019464:-101993 Msa1373930:exon
AGAATCTTCATCCTCATCAA+GGG 0.614208 tig0019464:+102020 None:intergenic
TTCATTCTATCCACGCTGTG+TGG 0.619096 tig0019464:-102630 Msa1373930:five_prime_UTR
GAGGGAAAACCTGATGTGCA+AGG 0.626356 tig0019464:-102252 Msa1373930:CDS
TCTCTCATCTACCAAAGCCA+TGG 0.628797 tig0019464:+102155 None:intergenic
ATCTTCATCCTCATCAAGGG+AGG 0.635880 tig0019464:+102023 None:intergenic
TCAGGTATGAGAGTATGGAT+AGG 0.637744 tig0019464:+102524 None:intergenic
TGTTGCTAAGTCCAAAGGGA+AGG 0.637762 tig0019464:+102112 None:intergenic
GCGGATGATTGAAGATGTTG+AGG 0.660911 tig0019464:+102462 None:intergenic
GTCTGGGATGGGACTCCAAG+AGG 0.664580 tig0019464:+102418 None:intergenic
AACCTATGCACCACACAGCG+TGG 0.667435 tig0019464:+102620 None:intergenic
GAATTTAGAATAAATACACA+AGG 0.671814 tig0019464:+101913 None:intergenic
GCTTGTGCACAAAACCTGTG+CGG 0.820156 tig0019464:+102443 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATGTTTTTTTTATAACT+TGG + tig0019464:102595-102614 None:intergenic 10.0%
!!! ATTATGTTTTTTTTATAACT+TGG + tig0019464:102595-102614 None:intergenic 10.0%
!!! TAATATTAGTTTATTAGCAT+TGG + tig0019464:101771-101790 None:intergenic 15.0%
!!! GTTTTTTAATACAACAAAAA+AGG + tig0019464:102419-102438 None:intergenic 15.0%
!!! TAATATTAGTTTATTAGCAT+TGG + tig0019464:101771-101790 None:intergenic 15.0%
!!! GTTTTTTAATACAACAAAAA+AGG + tig0019464:102419-102438 None:intergenic 15.0%
!! CTTTCAAACATAAATTGTAT+AGG - tig0019464:102038-102057 Msa1373930:CDS 20.0%
!!! GAATTTAGAATAAATACACA+AGG + tig0019464:102446-102465 None:intergenic 20.0%
!!! AAATTCTAATTTCTCTTTTC+TGG - tig0019464:102460-102479 Msa1373930:CDS 20.0%
!!! GTTTTTTTTATAACTTGGAT+TGG + tig0019464:102590-102609 None:intergenic 20.0%
!! CTTTCAAACATAAATTGTAT+AGG - tig0019464:102038-102057 Msa1373930:CDS 20.0%
!!! GAATTTAGAATAAATACACA+AGG + tig0019464:102446-102465 None:intergenic 20.0%
!!! AAATTCTAATTTCTCTTTTC+TGG - tig0019464:102460-102479 Msa1373930:CDS 20.0%
!!! GTTTTTTTTATAACTTGGAT+TGG + tig0019464:102590-102609 None:intergenic 20.0%
! TTTGCTTAATTCAGACAAAT+GGG + tig0019464:101805-101824 None:intergenic 25.0%
! ATTTGCTTAATTCAGACAAA+TGG + tig0019464:101806-101825 None:intergenic 25.0%
! TTTGATGAAGATGAAATTGT+TGG + tig0019464:101995-102014 None:intergenic 25.0%
! TGATGTATCAAATCAATTTG+TGG - tig0019464:102527-102546 Msa1373930:five_prime_UTR 25.0%
! GATGTATCAAATCAATTTGT+GGG - tig0019464:102528-102547 Msa1373930:five_prime_UTR 25.0%
! TTTGCTTAATTCAGACAAAT+GGG + tig0019464:101805-101824 None:intergenic 25.0%
! ATTTGCTTAATTCAGACAAA+TGG + tig0019464:101806-101825 None:intergenic 25.0%
! TTTGATGAAGATGAAATTGT+TGG + tig0019464:101995-102014 None:intergenic 25.0%
! TGATGTATCAAATCAATTTG+TGG - tig0019464:102527-102546 Msa1373930:five_prime_UTR 25.0%
! GATGTATCAAATCAATTTGT+GGG - tig0019464:102528-102547 Msa1373930:five_prime_UTR 25.0%
! TTTTCCTTGAATGTAGATTC+AGG + tig0019464:101853-101872 None:intergenic 30.0%
GAATCTACATTCAAGGAAAA+TGG - tig0019464:101853-101872 Msa1373930:three_prime_UTR 30.0%
TAGGAAAAACTTACCAACAA+TGG + tig0019464:101963-101982 None:intergenic 30.0%
! AAATTGTTGGTTGATTCACT+AGG + tig0019464:101982-102001 None:intergenic 30.0%
AGCAGATTCTTTCTTTGTTA+TGG - tig0019464:102494-102513 Msa1373930:exon 30.0%
AAATCAATTTGTGGGTTCAT+GGG - tig0019464:102536-102555 Msa1373930:five_prime_UTR 30.0%
! TTTTCCTTGAATGTAGATTC+AGG + tig0019464:101853-101872 None:intergenic 30.0%
GAATCTACATTCAAGGAAAA+TGG - tig0019464:101853-101872 Msa1373930:three_prime_UTR 30.0%
TAGGAAAAACTTACCAACAA+TGG + tig0019464:101963-101982 None:intergenic 30.0%
! AAATTGTTGGTTGATTCACT+AGG + tig0019464:101982-102001 None:intergenic 30.0%
AGCAGATTCTTTCTTTGTTA+TGG - tig0019464:102494-102513 Msa1373930:exon 30.0%
AAATCAATTTGTGGGTTCAT+GGG - tig0019464:102536-102555 Msa1373930:five_prime_UTR 30.0%
TAGATTCAGGTATGAGAGTA+TGG + tig0019464:101840-101859 None:intergenic 35.0%
CATACCTGAATCTACATTCA+AGG - tig0019464:101846-101865 Msa1373930:three_prime_UTR 35.0%
AAAATGGCAACCATTATTGC+TGG - tig0019464:101869-101888 Msa1373930:three_prime_UTR 35.0%
AAACTTACCAACAATGGTCT+GGG + tig0019464:101957-101976 None:intergenic 35.0%
AAAACTTACCAACAATGGTC+TGG + tig0019464:101958-101977 None:intergenic 35.0%
AGATTGTTGCTAAGTCCAAA+GGG + tig0019464:102251-102270 None:intergenic 35.0%
AAGATTGTTGCTAAGTCCAA+AGG + tig0019464:102252-102271 None:intergenic 35.0%
TTAGCAACAATCTTCTTGGT+TGG - tig0019464:102258-102277 Msa1373930:CDS 35.0%
!! TTGGTGTCTTTGGTCTTATA+TGG - tig0019464:102288-102307 Msa1373930:CDS 35.0%
AGAATCTTCATCCTCATCAA+GGG + tig0019464:102339-102358 None:intergenic 35.0%
TTGATGAGGATGAAGATTCT+GGG - tig0019464:102339-102358 Msa1373930:intron 35.0%
ACTGAACTGTGCAATTTCTA+AGG + tig0019464:102396-102415 None:intergenic 35.0%
CAAATCAATTTGTGGGTTCA+TGG - tig0019464:102535-102554 Msa1373930:five_prime_UTR 35.0%
TAGATTCAGGTATGAGAGTA+TGG + tig0019464:101840-101859 None:intergenic 35.0%
CATACCTGAATCTACATTCA+AGG - tig0019464:101846-101865 Msa1373930:three_prime_UTR 35.0%
AAAATGGCAACCATTATTGC+TGG - tig0019464:101869-101888 Msa1373930:three_prime_UTR 35.0%
AAACTTACCAACAATGGTCT+GGG + tig0019464:101957-101976 None:intergenic 35.0%
AAAACTTACCAACAATGGTC+TGG + tig0019464:101958-101977 None:intergenic 35.0%
AGATTGTTGCTAAGTCCAAA+GGG + tig0019464:102251-102270 None:intergenic 35.0%
AAGATTGTTGCTAAGTCCAA+AGG + tig0019464:102252-102271 None:intergenic 35.0%
TTAGCAACAATCTTCTTGGT+TGG - tig0019464:102258-102277 Msa1373930:CDS 35.0%
!! TTGGTGTCTTTGGTCTTATA+TGG - tig0019464:102288-102307 Msa1373930:CDS 35.0%
AGAATCTTCATCCTCATCAA+GGG + tig0019464:102339-102358 None:intergenic 35.0%
TTGATGAGGATGAAGATTCT+GGG - tig0019464:102339-102358 Msa1373930:intron 35.0%
ACTGAACTGTGCAATTTCTA+AGG + tig0019464:102396-102415 None:intergenic 35.0%
CAAATCAATTTGTGGGTTCA+TGG - tig0019464:102535-102554 Msa1373930:five_prime_UTR 35.0%
! TCAGGTATGAGAGTATGGAT+AGG + tig0019464:101835-101854 None:intergenic 40.0%
AGGATTGCCATCAATAGCTA+AGG - tig0019464:102058-102077 Msa1373930:CDS 40.0%
TTGCCATCAATAGCTAAGGT+TGG - tig0019464:102062-102081 Msa1373930:CDS 40.0%
CTTCCAACCTTAGCTATTGA+TGG + tig0019464:102068-102087 None:intergenic 40.0%
AAGAGTGAGATGTTCCATTG+AGG - tig0019464:102085-102104 Msa1373930:CDS 40.0%
AGAGTGAGATGTTCCATTGA+GGG - tig0019464:102086-102105 Msa1373930:CDS 40.0%
AAGCAGGTCAAACATAGGAA+TGG - tig0019464:102127-102146 Msa1373930:CDS 40.0%
AGCAGGTCAAACATAGGAAT+GGG - tig0019464:102128-102147 Msa1373930:CDS 40.0%
GGACTTAGCAACAATCTTCT+TGG - tig0019464:102254-102273 Msa1373930:CDS 40.0%
CTTCTTGGTTGGATCTTGTT+TGG - tig0019464:102269-102288 Msa1373930:CDS 40.0%
!! TGGATCTTGTTTGGTGTCTT+TGG - tig0019464:102278-102297 Msa1373930:CDS 40.0%
CAGAATCTTCATCCTCATCA+AGG + tig0019464:102340-102359 None:intergenic 40.0%
CTTGATGAGGATGAAGATTC+TGG - tig0019464:102338-102357 Msa1373930:intron 40.0%
TGTCTCTATAAAACCCCAGA+AGG - tig0019464:102363-102382 Msa1373930:intron 40.0%
! TCTAAGGTGCATATCCTTCT+GGG + tig0019464:102380-102399 None:intergenic 40.0%
!! TTCTAAGGTGCATATCCTTC+TGG + tig0019464:102381-102400 None:intergenic 40.0%
! TCAGGTATGAGAGTATGGAT+AGG + tig0019464:101835-101854 None:intergenic 40.0%
AGGATTGCCATCAATAGCTA+AGG - tig0019464:102058-102077 Msa1373930:CDS 40.0%
TTGCCATCAATAGCTAAGGT+TGG - tig0019464:102062-102081 Msa1373930:CDS 40.0%
CTTCCAACCTTAGCTATTGA+TGG + tig0019464:102068-102087 None:intergenic 40.0%
AAGAGTGAGATGTTCCATTG+AGG - tig0019464:102085-102104 Msa1373930:CDS 40.0%
AGAGTGAGATGTTCCATTGA+GGG - tig0019464:102086-102105 Msa1373930:CDS 40.0%
AAGCAGGTCAAACATAGGAA+TGG - tig0019464:102127-102146 Msa1373930:CDS 40.0%
AGCAGGTCAAACATAGGAAT+GGG - tig0019464:102128-102147 Msa1373930:CDS 40.0%
GGACTTAGCAACAATCTTCT+TGG - tig0019464:102254-102273 Msa1373930:CDS 40.0%
CTTCTTGGTTGGATCTTGTT+TGG - tig0019464:102269-102288 Msa1373930:CDS 40.0%
!! TGGATCTTGTTTGGTGTCTT+TGG - tig0019464:102278-102297 Msa1373930:CDS 40.0%
CAGAATCTTCATCCTCATCA+AGG + tig0019464:102340-102359 None:intergenic 40.0%
CTTGATGAGGATGAAGATTC+TGG - tig0019464:102338-102357 Msa1373930:intron 40.0%
TGTCTCTATAAAACCCCAGA+AGG - tig0019464:102363-102382 Msa1373930:intron 40.0%
! TCTAAGGTGCATATCCTTCT+GGG + tig0019464:102380-102399 None:intergenic 40.0%
!! TTCTAAGGTGCATATCCTTC+TGG + tig0019464:102381-102400 None:intergenic 40.0%
! TGTTGAGGTGCCAGCAATAA+TGG + tig0019464:101882-101901 None:intergenic 45.0%
GCGGATGATTGAAGATGTTG+AGG + tig0019464:101897-101916 None:intergenic 45.0%
ACATCTTCAATCATCCGCAC+AGG - tig0019464:101899-101918 Msa1373930:three_prime_UTR 45.0%
TTTGTGCACAAGCAACCTCT+TGG - tig0019464:101923-101942 Msa1373930:three_prime_UTR 45.0%
! TACCAACAATGGTCTGGGAT+GGG + tig0019464:101952-101971 None:intergenic 45.0%
TTACCAACAATGGTCTGGGA+TGG + tig0019464:101953-101972 None:intergenic 45.0%
! CACATCAGGTTTTCCCTCAA+TGG + tig0019464:102102-102121 None:intergenic 45.0%
CAAGGAAGCAGGTCAAACAT+AGG - tig0019464:102122-102141 Msa1373930:CDS 45.0%
AGCAGAGATAGCTGCTATCA+AGG + tig0019464:102159-102178 None:intergenic 45.0%
TCTCTCATCTACCAAAGCCA+TGG + tig0019464:102204-102223 None:intergenic 45.0%
!! GATGAGAGAATGAGCACTGA+AGG - tig0019464:102215-102234 Msa1373930:CDS 45.0%
!! AGAATGAGCACTGAAGGAAC+TGG - tig0019464:102221-102240 Msa1373930:CDS 45.0%
TGTTGCTAAGTCCAAAGGGA+AGG + tig0019464:102247-102266 None:intergenic 45.0%
ATCTTCATCCTCATCAAGGG+AGG + tig0019464:102336-102355 None:intergenic 45.0%
CTAAGGTGCATATCCTTCTG+GGG + tig0019464:102379-102398 None:intergenic 45.0%
! TGTTGAGGTGCCAGCAATAA+TGG + tig0019464:101882-101901 None:intergenic 45.0%
GCGGATGATTGAAGATGTTG+AGG + tig0019464:101897-101916 None:intergenic 45.0%
ACATCTTCAATCATCCGCAC+AGG - tig0019464:101899-101918 Msa1373930:three_prime_UTR 45.0%
TTTGTGCACAAGCAACCTCT+TGG - tig0019464:101923-101942 Msa1373930:three_prime_UTR 45.0%
! TACCAACAATGGTCTGGGAT+GGG + tig0019464:101952-101971 None:intergenic 45.0%
TTACCAACAATGGTCTGGGA+TGG + tig0019464:101953-101972 None:intergenic 45.0%
! CACATCAGGTTTTCCCTCAA+TGG + tig0019464:102102-102121 None:intergenic 45.0%
CAAGGAAGCAGGTCAAACAT+AGG - tig0019464:102122-102141 Msa1373930:CDS 45.0%
AGCAGAGATAGCTGCTATCA+AGG + tig0019464:102159-102178 None:intergenic 45.0%
TCTCTCATCTACCAAAGCCA+TGG + tig0019464:102204-102223 None:intergenic 45.0%
!! GATGAGAGAATGAGCACTGA+AGG - tig0019464:102215-102234 Msa1373930:CDS 45.0%
!! AGAATGAGCACTGAAGGAAC+TGG - tig0019464:102221-102240 Msa1373930:CDS 45.0%
TGTTGCTAAGTCCAAAGGGA+AGG + tig0019464:102247-102266 None:intergenic 45.0%
ATCTTCATCCTCATCAAGGG+AGG + tig0019464:102336-102355 None:intergenic 45.0%
CTAAGGTGCATATCCTTCTG+GGG + tig0019464:102379-102398 None:intergenic 45.0%
GCTTGTGCACAAAACCTGTG+CGG + tig0019464:101916-101935 None:intergenic 50.0%
GAGGGAAAACCTGATGTGCA+AGG - tig0019464:102104-102123 Msa1373930:CDS 50.0%
AACCTGATGTGCAAGGAAGC+AGG - tig0019464:102111-102130 Msa1373930:CDS 50.0%
GCTTGTGCACAAAACCTGTG+CGG + tig0019464:101916-101935 None:intergenic 50.0%
GAGGGAAAACCTGATGTGCA+AGG - tig0019464:102104-102123 Msa1373930:CDS 50.0%
AACCTGATGTGCAAGGAAGC+AGG - tig0019464:102111-102130 Msa1373930:CDS 50.0%
ATCCACGCTGTGTGGTGCAT+AGG - tig0019464:101734-101753 Msa1373930:three_prime_UTR 55.0%
AACCTATGCACCACACAGCG+TGG + tig0019464:101739-101758 None:intergenic 55.0%
GTCCCATCCCAGACCATTGT+TGG - tig0019464:101947-101966 Msa1373930:three_prime_UTR 55.0%
GACCTGCTTCCTTGCACATC+AGG + tig0019464:102116-102135 None:intergenic 55.0%
CTACCAAAGCCATGGCTGCT+GGG + tig0019464:102196-102215 None:intergenic 55.0%
TCTACCAAAGCCATGGCTGC+TGG + tig0019464:102197-102216 None:intergenic 55.0%
!! GAAGGAACTGGCCTTCCCTT+TGG - tig0019464:102233-102252 Msa1373930:CDS 55.0%
CTACGCTTCCTCCCTTGATG+AGG - tig0019464:102325-102344 Msa1373930:intron 55.0%
ATCCACGCTGTGTGGTGCAT+AGG - tig0019464:101734-101753 Msa1373930:three_prime_UTR 55.0%
AACCTATGCACCACACAGCG+TGG + tig0019464:101739-101758 None:intergenic 55.0%
GTCCCATCCCAGACCATTGT+TGG - tig0019464:101947-101966 Msa1373930:three_prime_UTR 55.0%
GACCTGCTTCCTTGCACATC+AGG + tig0019464:102116-102135 None:intergenic 55.0%
CTACCAAAGCCATGGCTGCT+GGG + tig0019464:102196-102215 None:intergenic 55.0%
TCTACCAAAGCCATGGCTGC+TGG + tig0019464:102197-102216 None:intergenic 55.0%
!! GAAGGAACTGGCCTTCCCTT+TGG - tig0019464:102233-102252 Msa1373930:CDS 55.0%
CTACGCTTCCTCCCTTGATG+AGG - tig0019464:102325-102344 Msa1373930:intron 55.0%
! GTCTGGGATGGGACTCCAAG+AGG + tig0019464:101941-101960 None:intergenic 60.0%
CATGGCTGCTGGGCTTGACA+AGG + tig0019464:102186-102205 None:intergenic 60.0%
CTTGTCAAGCCCAGCAGCCA+TGG - tig0019464:102184-102203 Msa1373930:CDS 60.0%
AAGCCCAGCAGCCATGGCTT+TGG - tig0019464:102190-102209 Msa1373930:CDS 60.0%
! GTCTGGGATGGGACTCCAAG+AGG + tig0019464:101941-101960 None:intergenic 60.0%
CATGGCTGCTGGGCTTGACA+AGG + tig0019464:102186-102205 None:intergenic 60.0%
CTTGTCAAGCCCAGCAGCCA+TGG - tig0019464:102184-102203 Msa1373930:CDS 60.0%
AAGCCCAGCAGCCATGGCTT+TGG - tig0019464:102190-102209 Msa1373930:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0019464 gene 101729 102649 101729 ID=Msa1373930;Name=Msa1373930
tig0019464 mRNA 101729 102649 101729 ID=Msa1373930-mRNA-1;Parent=Msa1373930;Name=Msa1373930-mRNA-1;_AED=0.39;_eAED=0.39;_QI=143|1|1|1|1|1|2|276|136
tig0019464 exon 101729 102318 101729 ID=Msa1373930-mRNA-1:exon:3661;Parent=Msa1373930-mRNA-1
tig0019464 exon 102410 102649 102410 ID=Msa1373930-mRNA-1:exon:3660;Parent=Msa1373930-mRNA-1
tig0019464 five_prime_UTR 102507 102649 102507 ID=Msa1373930-mRNA-1:five_prime_utr;Parent=Msa1373930-mRNA-1
tig0019464 CDS 102410 102506 102410 ID=Msa1373930-mRNA-1:cds;Parent=Msa1373930-mRNA-1
tig0019464 CDS 102005 102318 102005 ID=Msa1373930-mRNA-1:cds;Parent=Msa1373930-mRNA-1
tig0019464 three_prime_UTR 101729 102004 101729 ID=Msa1373930-mRNA-1:three_prime_utr;Parent=Msa1373930-mRNA-1
Gene Sequence

>Msa1373930

ATGGCAACCATTATTGCTGGCACCTCAACATCTTCAATCATCCGCACAGGTTTTGTGCACAAGCAACCTCTTGGAGTCCCATCCCAGACCATTGTTGGATTGCCATCAATAGCTAAGGTTGGAAGAGTGAGATGTTCCATTGAGGGAAAACCTGATGTGCAAGGAAGCAGGTCAAACATAGGAATGGGAGCATCCTTGATAGCAGCTATCTCTGCTGCAACCTTGTCAAGCCCAGCAGCCATGGCTTTGGTAGATGAGAGAATGAGCACTGAAGGAACTGGCCTTCCCTTTGGACTTAGCAACAATCTTCTTGGTTGGATCTTGTTTGGTGTCTTTGGTCTTATATGGACTCTCTATTTTATCTACGCTTCCTCCCTTGATGAGGATGAAGATTCTGGGTTGTCTCTATAA

Protein sequence

>Msa1373930

MATIIAGTSTSSIIRTGFVHKQPLGVPSQTIVGLPSIAKVGRVRCSIEGKPDVQGSRSNIGMGASLIAAISAATLSSPAAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTLYFIYASSLDEDEDSGLSL*