AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0404710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0404710 MtrunA17_Chr3g0095111 94.245 417 8 1 1 417 1 401 0.0 797
Msa0404710 MtrunA17_Chr5g0442131 77.698 417 77 1 1 417 1 401 0.0 673
Msa0404710 MtrunA17_Chr5g0445301 79.412 170 34 1 249 417 7 176 7.81e-93 277
Msa0404710 MtrunA17_Chr5g0428161 75.806 124 30 0 179 302 6 129 1.00e-63 201
Msa0404710 MtrunA17_Chr5g0428171 63.291 79 13 1 28 106 1 63 9.42e-23 91.3
Msa0404710 MtrunA17_Chr5g0445291 72.500 40 11 0 97 136 1 40 1.92e-15 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0404710 AT2G13360.3 82.494 417 57 1 1 417 1 401 0.0 718
Msa0404710 AT2G13360.1 82.494 417 57 1 1 417 1 401 0.0 718
Msa0404710 AT2G13360.2 82.494 417 57 1 1 417 1 401 0.0 718

Find 143 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTCTTGCAACAAATATT+AGG 0.133896 3_2:-37180657 Msa0404710:three_prime_UTR
CCTTCCATTCAGCTTCTTTA+TGG 0.134580 3_2:-37182449 Msa0404710:CDS
CAACATCGACATTAAATTTA+AGG 0.143214 3_2:+37183444 None:intergenic
CAACTATTGGGTTGTCTTGC+TGG 0.175642 3_2:-37181037 Msa0404710:CDS
TGTTGGTTACCCAGTAAAAT+TGG 0.196012 3_2:-37180993 Msa0404710:CDS
TTTGAAGCTTCAATGGCTTT+AGG 0.239169 3_2:+37182554 None:intergenic
TCTAACTGTGGCCAAGTTAT+TGG 0.247414 3_2:+37183301 None:intergenic
CTTTCCCTTCCTACTGGTAT+TGG 0.249614 3_2:-37182593 Msa0404710:CDS
TTTACCTATAAAGAAGAATT+TGG 0.267936 3_2:+37180690 None:intergenic
GACACCAAATTCTTCTTTAT+AGG 0.274537 3_2:-37180694 Msa0404710:three_prime_UTR
TCTACAAGATGGGAACTTAT+TGG 0.275033 3_2:-37182481 Msa0404710:CDS
TTGAAGCTTCAATGGCTTTA+GGG 0.275233 3_2:+37182555 None:intergenic
TTCTCTTGCAACAAATATTA+GGG 0.281198 3_2:-37180656 Msa0404710:three_prime_UTR
AACGATAGTCCTCGTTGTTT+CGG 0.283890 3_2:+37184595 None:intergenic
GGGAAGATGGATTATGTTAA+TGG 0.310016 3_2:-37184687 Msa0404710:exon
TTCCCATCTTGTAGAACTTC+AGG 0.327105 3_2:+37182489 None:intergenic
CCAGCCCTCCTCCTTGTTGA+TGG 0.337800 3_2:-37182695 Msa0404710:CDS
AAAGAAAACTCGAAGTGATT+TGG 0.339222 3_2:+37182526 None:intergenic
TTGGCCAATTCAGTTTGCTT+TGG 0.339533 3_2:-37183484 Msa0404710:CDS
TGGCCAATTCAGTTTGCTTT+GGG 0.347985 3_2:-37183483 Msa0404710:CDS
CGTATTGTATCTTTCGTGAT+TGG 0.350211 3_2:-37183503 Msa0404710:CDS
TCCTACTGGTATTGGATTTG+TGG 0.355399 3_2:-37182585 Msa0404710:CDS
AAAGTTATGCTAAGAGCATT+TGG 0.361912 3_2:-37185662 Msa0404710:five_prime_UTR
AGCTGAATGGAAGGAGTATA+TGG 0.363954 3_2:+37182458 None:intergenic
AGAAACCATCTCTTTGTTCC+AGG 0.369723 3_2:-37184657 Msa0404710:CDS
ATTGCAAGGCACAACCGTTT+AGG 0.371084 3_2:-37182377 Msa0404710:CDS
TCCATAAAAGTCTCAAATAA+AGG 0.371861 3_2:+37180715 None:intergenic
TTTGTCAGAGCTGGAATTGC+GGG 0.374040 3_2:+37184570 None:intergenic
TACAATTTGAGCTTAGGTTT+GGG 0.376409 3_2:-37181858 Msa0404710:CDS
ATATTCCTCTCATTCCTTCA+AGG 0.379866 3_2:-37180931 Msa0404710:CDS
TGATTCTGCACACACTATAA+AGG 0.387046 3_2:-37183363 Msa0404710:CDS
TTGGTTCAGGTACCGGTGCT+TGG 0.388560 3_2:-37183562 Msa0404710:CDS
ATACAATTTGAGCTTAGGTT+TGG 0.393748 3_2:-37181859 Msa0404710:CDS
CGTCTTCAAGAGAGTTCAAA+AGG 0.393874 3_2:+37180817 None:intergenic
AAAAGATACAATTTGAGCTT+AGG 0.398290 3_2:-37181864 Msa0404710:CDS
CAACCCAAAGCAAACTGAAT+TGG 0.402256 3_2:+37183480 None:intergenic
GGAGTAGATGTGGCCATAAC+TGG 0.407058 3_2:-37182629 Msa0404710:CDS
TTTGCATTTGGTTCAGGTAC+CGG 0.407614 3_2:-37183569 Msa0404710:CDS
ACAAAGAGATGGTTTCTTCC+TGG 0.409728 3_2:+37184663 None:intergenic
TCAGGTAGTTTGGTGAAGTA+TGG 0.413909 3_2:+37185613 None:intergenic
TTGGGACTAAACAAAGTTGC+TGG 0.415993 3_2:-37181840 Msa0404710:CDS
TGAGTGTACCTCAGGTAGTT+TGG 0.417771 3_2:+37185603 None:intergenic
ACCTGGTCCGGTATGTTAAC+CGG 0.419216 3_2:+37184633 None:intergenic
TGGTTCAGGTACCGGTGCTT+GGG 0.420179 3_2:-37183561 Msa0404710:CDS
TCCGGTATGTTAACCGGCCC+TGG 0.422439 3_2:+37184639 None:intergenic
CTTCAAGGATTTGAGTTACA+TGG 0.423165 3_2:-37180916 Msa0404710:exon
CGATTTCCGTATGGACGAAT+GGG 0.433716 3_2:-37182651 Msa0404710:CDS
TTTGAAGAATTGCACACAAA+AGG 0.438210 3_2:-37181967 Msa0404710:CDS
CATGTAACTCAAATCCTTGA+AGG 0.438228 3_2:+37180917 None:intergenic
AAATTTCAAGCAAGGGAAGA+TGG 0.440926 3_2:-37184700 Msa0404710:exon
GTTGTTCCTCCTTACATTGA+CGG 0.446006 3_2:-37181912 Msa0404710:CDS
GTTGGTTACCCAGTAAAATT+GGG 0.446538 3_2:-37180992 Msa0404710:CDS
TATATAGGTGGTTCTTTGGT+GGG 0.449993 3_2:-37184760 Msa0404710:intron
TCTCCCTCTTATCTACTACT+TGG 0.450916 3_2:-37185749 Msa0404710:five_prime_UTR
TTGTCCAAGTAGTAGATAAG+AGG 0.452694 3_2:+37185745 None:intergenic
GGGACAAGAAAGTAGGAGAA+TGG 0.462118 3_2:-37185852 Msa0404710:five_prime_UTR
TAAATTTAATGTCGATGTTG+TGG 0.462439 3_2:-37183441 Msa0404710:CDS
ACGGAAATCGAGAGCACAAA+TGG 0.462702 3_2:+37182664 None:intergenic
CGTGCAACAATACCAGTAGT+AGG 0.462961 3_2:+37184486 None:intergenic
ACGGTGCTGAAGTTGTTAGA+AGG 0.464067 3_2:-37181893 Msa0404710:CDS
CCAGTAGTAGGGATAAGAAA+TGG 0.469745 3_2:+37184498 None:intergenic
ACCTGGTAGCTGTACCTAAA+CGG 0.470045 3_2:+37182363 None:intergenic
ATATCATAAATGAGCAGAAA+AGG 0.470564 3_2:+37180875 None:intergenic
CCATTTCTTATCCCTACTAC+TGG 0.470967 3_2:-37184498 Msa0404710:intron
CAGACTTGCTGTGGAGGCAT+GGG 0.471086 3_2:-37181991 Msa0404710:CDS
TTATATAGGTGGTTCTTTGG+TGG 0.471535 3_2:-37184761 Msa0404710:intron
AGATTATCTACAAAATCTAT+TGG 0.474293 3_2:+37180477 None:intergenic
GCCACAGTTAGAAAACTTCT+CGG 0.483622 3_2:-37183290 Msa0404710:intron
GGCTTTCTGAGAACCAGTTA+TGG 0.484234 3_2:+37182616 None:intergenic
CTTCATCCATTCACAGCCTC+AGG 0.485436 3_2:-37185782 Msa0404710:five_prime_UTR
CCATCTCTTTGTTCCAGGGC+CGG 0.485720 3_2:-37184652 Msa0404710:CDS
ATTGGGTTGTCTTGCTGGTG+TGG 0.485766 3_2:-37181032 Msa0404710:CDS
TCCAGGGCCGGTTAACATAC+CGG 0.489689 3_2:-37184640 Msa0404710:CDS
AACTGGTGTCACCAATAACT+TGG 0.495827 3_2:-37183312 Msa0404710:CDS
AGAGTTTGAAATTTCAAGCA+AGG 0.501611 3_2:-37184708 Msa0404710:five_prime_UTR
CCATCAACAAGGAGGAGGGC+TGG 0.501743 3_2:+37182695 None:intergenic
CGATGTTGTGGAAAGTGAAT+GGG 0.504080 3_2:-37183429 Msa0404710:CDS
ACTTCAGCACCGTCAATGTA+AGG 0.505077 3_2:+37181903 None:intergenic
AAATGTAGGGACAAGAAAGT+AGG 0.507102 3_2:-37185859 Msa0404710:five_prime_UTR
TCGATTTCCGTATGGACGAA+TGG 0.508249 3_2:-37182652 Msa0404710:CDS
ACAGACTTGCTGTGGAGGCA+TGG 0.510945 3_2:-37181992 Msa0404710:intron
AAAGCCCTTTCCCTTCCTAC+TGG 0.518469 3_2:-37182599 Msa0404710:CDS
ATAGCACGAATGACCTGGTC+CGG 0.521295 3_2:+37184621 None:intergenic
ACTAAACAAAGTTGCTGGAA+AGG 0.522582 3_2:-37181835 Msa0404710:CDS
TTGACAAACACATTGTCGCC+TGG 0.523761 3_2:-37183530 Msa0404710:CDS
TCGATGTTGTGGAAAGTGAA+TGG 0.525669 3_2:-37183430 Msa0404710:CDS
GAGTTTGAAATTTCAAGCAA+GGG 0.526677 3_2:-37184707 Msa0404710:five_prime_UTR
AAGACCATAAAGAAGCTGAA+TGG 0.527183 3_2:+37182445 None:intergenic
CAAGGAGGAGGGCTGGATGT+TGG 0.529269 3_2:+37182702 None:intergenic
CTACTCCCCATTCGTCCATA+CGG 0.535292 3_2:+37182645 None:intergenic
GCCGGTTAACATACCGGACC+AGG 0.546518 3_2:-37184634 Msa0404710:CDS
TTGTGCTCTCGATTTCCGTA+TGG 0.548771 3_2:-37182660 Msa0404710:CDS
GTGGAAAGTGAATGGGGCTG+TGG 0.549273 3_2:-37183422 Msa0404710:CDS
ACCGTTTAGGTACAGCTACC+AGG 0.550599 3_2:-37182364 Msa0404710:intron
CCATAAAGAAGCTGAATGGA+AGG 0.555686 3_2:+37182449 None:intergenic
CAAATCCAATACCAGTAGGA+AGG 0.557167 3_2:+37182588 None:intergenic
AAGCATCCTGAGGCTGTGAA+TGG 0.557469 3_2:+37185776 None:intergenic
ATGCTAAGAGCATTTGGCAG+TGG 0.557775 3_2:-37185656 Msa0404710:five_prime_UTR
CTGAAGTTGTTAGAAGGGCA+TGG 0.559985 3_2:-37181887 Msa0404710:CDS
CTACCTGAAGTTCTACAAGA+TGG 0.564948 3_2:-37182492 Msa0404710:CDS
CGGTGCTGAAGTTGTTAGAA+GGG 0.565477 3_2:-37181892 Msa0404710:CDS
TGTCCAAGTAGTAGATAAGA+GGG 0.566128 3_2:+37185746 None:intergenic
TACCCAGTAAAATTGGGAAG+TGG 0.568031 3_2:-37180986 Msa0404710:CDS
CAATACCAGTAGGAAGGGAA+AGG 0.568672 3_2:+37182594 None:intergenic
AAAGATACAATACGATCTCC+AGG 0.572618 3_2:+37183512 None:intergenic
GGACGAATGGGGAGTAGATG+TGG 0.573975 3_2:-37182639 Msa0404710:CDS
GTTCATAATGAGACTGCAAC+TGG 0.575174 3_2:-37183329 Msa0404710:CDS
GTTTGGTGAAGTATGGCAGA+AGG 0.575524 3_2:+37185620 None:intergenic
TACCTGAAGTTCTACAAGAT+GGG 0.576311 3_2:-37182491 Msa0404710:CDS
ATTGTTCTGTAAGTATGCAC+TGG 0.576598 3_2:+37180952 None:intergenic
AAATCCAATACCAGTAGGAA+GGG 0.577438 3_2:+37182589 None:intergenic
GACTTGACAATATTATTGCA+AGG 0.578019 3_2:-37182391 Msa0404710:CDS
AATACCAGTAGGAAGGGAAA+GGG 0.578211 3_2:+37182595 None:intergenic
ATGGATTATGTTAATGGACC+AGG 0.579109 3_2:-37184681 Msa0404710:CDS
GGCTCATAGCACGAATGACC+TGG 0.583959 3_2:+37184616 None:intergenic
GAAACCATCTCTTTGTTCCA+GGG 0.585783 3_2:-37184656 Msa0404710:CDS
CAAATCCTTGAAGGAATGAG+AGG 0.585795 3_2:+37180926 None:intergenic
ACACTCCATCAACAAGGAGG+AGG 0.586969 3_2:+37182690 None:intergenic
GTGCAACAATACCAGTAGTA+GGG 0.591965 3_2:+37184487 None:intergenic
TCTGTGTGTGTAATTAGTCA+TGG 0.603223 3_2:-37180560 Msa0404710:three_prime_UTR
TGGTAAATACAGACTTGCTG+TGG 0.606808 3_2:-37182000 Msa0404710:intron
CACTCCATCAACAAGGAGGA+GGG 0.606889 3_2:+37182691 None:intergenic
AGACTTGCTGTGGAGGCATG+GGG 0.607099 3_2:-37181990 Msa0404710:CDS
GTCTTCAAGAGAGTTCAAAA+GGG 0.607588 3_2:+37180818 None:intergenic
TAAATACAGACTTGCTGTGG+AGG 0.610487 3_2:-37181997 Msa0404710:intron
CCGGCCCTGGAACAAAGAGA+TGG 0.617441 3_2:+37184652 None:intergenic
CAAAGCACTCTCCCAAGCAC+CGG 0.620119 3_2:+37183550 None:intergenic
GAGGCTGTGAATGGATGAAG+TGG 0.621141 3_2:+37185785 None:intergenic
GAGATGATACTCAGAGATGT+TGG 0.631831 3_2:-37181010 Msa0404710:CDS
ATTGCACACAAAAGGAAGAG+TGG 0.645383 3_2:-37181959 Msa0404710:CDS
TCTACTACTTGGACAAGACA+TGG 0.648390 3_2:-37185738 Msa0404710:five_prime_UTR
TGCTATGAGCCGAAACAACG+AGG 0.669595 3_2:-37184604 Msa0404710:CDS
ATACTTCACCAAACTACCTG+AGG 0.670987 3_2:-37185611 Msa0404710:intron
ACATCTTGGCAACTTGAACG+AGG 0.675450 3_2:-37181799 Msa0404710:intron
GATGTTGTGGAAAGTGAATG+GGG 0.683154 3_2:-37183428 Msa0404710:CDS
GGGAGAAAATAAGCATCCTG+AGG 0.691767 3_2:+37185766 None:intergenic
GATTTCCGTATGGACGAATG+GGG 0.694111 3_2:-37182650 Msa0404710:CDS
TGGATGACACTCCATCAACA+AGG 0.697918 3_2:+37182684 None:intergenic
ACCACAAATCCAATACCAGT+AGG 0.700818 3_2:+37182584 None:intergenic
TCAGCACCGTCAATGTAAGG+AGG 0.705659 3_2:+37181906 None:intergenic
AACTGTAATCTGAGCCACTG+AGG 0.721812 3_2:-37185812 Msa0404710:five_prime_UTR
GATGAAGTGGAACACCTCAG+TGG 0.725587 3_2:+37185798 None:intergenic
ATGACACTCCATCAACAAGG+AGG 0.767226 3_2:+37182687 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTAGAAATAAATGT+AGG - chr3_2:37180487-37180506 Msa0404710:three_prime_UTR 10.0%
!! AAAAATTAGAAATAAATGTA+GGG - chr3_2:37180488-37180507 Msa0404710:three_prime_UTR 10.0%
!! ATATAAATGATTTAATATGA+TGG - chr3_2:37181006-37181025 Msa0404710:CDS 10.0%
!!! ATATCCTTTTTATAAATTAT+TGG - chr3_2:37183356-37183375 Msa0404710:CDS 10.0%
!!! AAAAAGAATCAGAAATTTTA+AGG + chr3_2:37180653-37180672 None:intergenic 15.0%
!! TTAATAACTTTCTGAATTAT+TGG + chr3_2:37181559-37181578 None:intergenic 15.0%
!! AATGCCAATAATTTATAAAA+AGG + chr3_2:37183363-37183382 None:intergenic 15.0%
!!! TCAAAACAAAATTTTGTTTA+TGG + chr3_2:37183495-37183514 None:intergenic 15.0%
!!! TTTTTATTGTCTTTATGAAA+TGG - chr3_2:37183601-37183620 Msa0404710:CDS 15.0%
!! CAAAAAAAAAGATTATTGTT+TGG - chr3_2:37184087-37184106 Msa0404710:intron 15.0%
!!! TTATAATAGTTGAAACTTTT+TGG - chr3_2:37184306-37184325 Msa0404710:intron 15.0%
!!! AATTTGAAGTTTAAAAATCA+AGG - chr3_2:37184850-37184869 Msa0404710:intron 15.0%
!! TTATAAATATTTACGTGTAT+TGG + chr3_2:37184911-37184930 None:intergenic 15.0%
!!! ATTTTACCAAGCATAAAAAA+AGG + chr3_2:37181048-37181067 None:intergenic 20.0%
!! AGAGATACTAATACTAAAAT+TGG + chr3_2:37181090-37181109 None:intergenic 20.0%
!! TGAAACGGTAAATAAATATA+GGG + chr3_2:37181177-37181196 None:intergenic 20.0%
!! ATGAAACGGTAAATAAATAT+AGG + chr3_2:37181178-37181197 None:intergenic 20.0%
!!! TTATAGTTTTTTTTACCAAG+TGG - chr3_2:37181276-37181295 Msa0404710:intron 20.0%
!!! CTTTGTGATGTTTTTTATAT+AGG - chr3_2:37181585-37181604 Msa0404710:intron 20.0%
!! TTGAATAATTCAATACAACT+AGG + chr3_2:37182211-37182230 None:intergenic 20.0%
!!! ATTATTTTCATAAGCTATCT+TGG + chr3_2:37182338-37182357 None:intergenic 20.0%
!!! TGTTTTATTTTGCATGTATT+TGG - chr3_2:37182669-37182688 Msa0404710:CDS 20.0%
!!! ATTTACGTTTTATCTTTATC+AGG - chr3_2:37182737-37182756 Msa0404710:intron 20.0%
!! TAGTTTCAGAAATATTACTT+AGG - chr3_2:37183245-37183264 Msa0404710:intron 20.0%
!!! TTTTTGCTAGAAATGTTTTT+AGG + chr3_2:37184073-37184092 None:intergenic 20.0%
!!! TTGTTGTTAACTATATGTAT+CGG + chr3_2:37184663-37184682 None:intergenic 20.0%
!! AAGTATAACTTGAACATATT+AGG + chr3_2:37184815-37184834 None:intergenic 20.0%
!!! TCTTTTCCTAAAATACTTAT+CGG - chr3_2:37185180-37185199 Msa0404710:intron 20.0%
!!! TTAATACCGATAAGTATTTT+AGG + chr3_2:37185189-37185208 None:intergenic 20.0%
!! TAAAGAATTAGCAATTTCAA+TGG + chr3_2:37185286-37185305 None:intergenic 20.0%
!! TTTACCTATAAAGAAGAATT+TGG + chr3_2:37185673-37185692 None:intergenic 20.0%
!!! AATTTTAAAGCATGACAATT+TGG - chr3_2:37185856-37185875 Msa0404710:five_prime_UTR 20.0%
!!! AGAATCAGAAATTTTAAGGT+GGG + chr3_2:37180649-37180668 None:intergenic 25.0%
!!! AAGAATCAGAAATTTTAAGG+TGG + chr3_2:37180650-37180669 None:intergenic 25.0%
!!! TTACTACCTTTTTTTATGCT+TGG - chr3_2:37181039-37181058 Msa0404710:CDS 25.0%
! AGTATTAGTATCTCTCATAT+AGG - chr3_2:37181095-37181114 Msa0404710:intron 25.0%
!!! CTTTTGTTTTTGTCATGAAA+CGG + chr3_2:37181192-37181211 None:intergenic 25.0%
! AAAAAAACTATAAGTAGCTG+AGG + chr3_2:37181269-37181288 None:intergenic 25.0%
! ATAGTTGTTCTATTATTCCA+TGG + chr3_2:37181510-37181529 None:intergenic 25.0%
!!! TGTGATGTTTTTTATATAGG+TGG - chr3_2:37181588-37181607 Msa0404710:intron 25.0%
!! TTTTTATATAGGTGGTTCTT+TGG - chr3_2:37181596-37181615 Msa0404710:intron 25.0%
!! TTGAACAATTTGGTTTATCA+AGG + chr3_2:37181900-37181919 None:intergenic 25.0%
! CATACAAACATTGAACAATT+TGG + chr3_2:37181910-37181929 None:intergenic 25.0%
! ATTAAGCTGAAAACAACTTA+TGG + chr3_2:37182020-37182039 None:intergenic 25.0%
! AATAAACTGAAAACAGCTTA+TGG + chr3_2:37182303-37182322 None:intergenic 25.0%
! CTAAGTCATGTATGTAAATA+AGG + chr3_2:37182527-37182546 None:intergenic 25.0%
! CCAAAAGTGAATGAAATATA+TGG + chr3_2:37182608-37182627 None:intergenic 25.0%
!! CCATATATTTCATTCACTTT+TGG - chr3_2:37182605-37182624 Msa0404710:CDS 25.0%
!! GTATTAAATTGTGTGTGTTT+TGG - chr3_2:37182637-37182656 Msa0404710:CDS 25.0%
!!! TTTATTTTGCATGTATTTGG+AGG - chr3_2:37182672-37182691 Msa0404710:CDS 25.0%
! ATTTGGAGGTTACAAAATAA+TGG - chr3_2:37182686-37182705 Msa0404710:CDS 25.0%
!! GTTTTATCTTTATCAGGATA+TGG - chr3_2:37182743-37182762 Msa0404710:intron 25.0%
!! TGTAATAACGTTTTTGCATT+TGG - chr3_2:37182779-37182798 Msa0404710:intron 25.0%
! CAACATCGACATTAAATTTA+AGG + chr3_2:37182919-37182938 None:intergenic 25.0%
! TAAATTTAATGTCGATGTTG+TGG - chr3_2:37182919-37182938 Msa0404710:intron 25.0%
! AACAAAAGTAATATTTGCGA+AGG + chr3_2:37183209-37183228 None:intergenic 25.0%
! TTTCAGAAATATTACTTAGG+TGG - chr3_2:37183248-37183267 Msa0404710:intron 25.0%
! TTACATATCTCGATAATCAT+TGG + chr3_2:37183522-37183541 None:intergenic 25.0%
! TTGTACTAAATAATGTATCG+TGG + chr3_2:37184215-37184234 None:intergenic 25.0%
! AAAAGATACAATTTGAGCTT+AGG - chr3_2:37184496-37184515 Msa0404710:intron 25.0%
!! AACTTGTTCTTAATTCTTCT+TGG - chr3_2:37185006-37185025 Msa0404710:intron 25.0%
! GCATTATGAGAATAATATCA+AGG - chr3_2:37185251-37185270 Msa0404710:intron 25.0%
!!! TTTTTTTCAGTTGCAACTAT+TGG - chr3_2:37185310-37185329 Msa0404710:intron 25.0%
!!! TTTTTTCAGTTGCAACTATT+GGG - chr3_2:37185311-37185330 Msa0404710:intron 25.0%
! ATATCATAAATGAGCAGAAA+AGG + chr3_2:37185488-37185507 None:intergenic 25.0%
!!! ACCTTTATTTGAGACTTTTA+TGG - chr3_2:37185644-37185663 Msa0404710:five_prime_UTR 25.0%
! TCCATAAAAGTCTCAAATAA+AGG + chr3_2:37185648-37185667 None:intergenic 25.0%
! TTCTCTTGCAACAAATATTA+GGG - chr3_2:37185704-37185723 Msa0404710:five_prime_UTR 25.0%
!!! GAATCAGAAATTTTAAGGTG+GGG + chr3_2:37180648-37180667 None:intergenic 30.0%
!! AAAGTTATGCTAAGAGCATT+TGG - chr3_2:37180698-37180717 Msa0404710:three_prime_UTR 30.0%
!! CCAAAGCTTTTTCTTTGTAT+AGG + chr3_2:37180849-37180868 None:intergenic 30.0%
CCTATACAAAGAAAAAGCTT+TGG - chr3_2:37180846-37180865 Msa0404710:three_prime_UTR 30.0%
! GTTTTTATGACTTCCACTTT+TGG - chr3_2:37180938-37180957 Msa0404710:CDS 30.0%
AATTGGAAGTGATGCTTAAT+TGG + chr3_2:37181073-37181092 None:intergenic 30.0%
! AGGATTTAGTCTGAACTTTT+TGG - chr3_2:37181115-37181134 Msa0404710:intron 30.0%
! TCAGTCACAAATTTTTACCA+TGG - chr3_2:37181358-37181377 Msa0404710:intron 30.0%
ACATAATTCAGTGTAATCGT+AGG + chr3_2:37181424-37181443 None:intergenic 30.0%
! AGAGTTTGAAATTTCAAGCA+AGG - chr3_2:37181652-37181671 Msa0404710:intron 30.0%
! GAGTTTGAAATTTCAAGCAA+GGG - chr3_2:37181653-37181672 Msa0404710:intron 30.0%
!! AAGATTTTCAAGACTACTAC+TGG - chr3_2:37181835-37181854 Msa0404710:CDS 30.0%
! TTGGATAGAATCAGATTTTG+TGG + chr3_2:37183124-37183143 None:intergenic 30.0%
GAAATATTACTTAGGTGGTA+AGG - chr3_2:37183253-37183272 Msa0404710:intron 30.0%
! ATAAGTATGCATCTGAAACT+TGG - chr3_2:37183421-37183440 Msa0404710:CDS 30.0%
AAAGAAAACTCGAAGTGATT+TGG + chr3_2:37183837-37183856 None:intergenic 30.0%
GACTTGACAATATTATTGCA+AGG - chr3_2:37183969-37183988 Msa0404710:intron 30.0%
GTTAAGTCAATGAATCTGAT+AGG - chr3_2:37184328-37184347 Msa0404710:intron 30.0%
TTTGAAGAATTGCACACAAA+AGG - chr3_2:37184393-37184412 Msa0404710:intron 30.0%
ATACAATTTGAGCTTAGGTT+TGG - chr3_2:37184501-37184520 Msa0404710:CDS 30.0%
TACAATTTGAGCTTAGGTTT+GGG - chr3_2:37184502-37184521 Msa0404710:CDS 30.0%
TTGTTAACTATATGTATCGG+TGG + chr3_2:37184660-37184679 None:intergenic 30.0%
! TGTGACAAAACACATTGTTT+TGG - chr3_2:37184764-37184783 Msa0404710:intron 30.0%
!!! AAACACATTGTTTTGGCTTA+CGG - chr3_2:37184771-37184790 Msa0404710:intron 30.0%
AAAATCAAGGTTCATGTCAA+AGG - chr3_2:37184863-37184882 Msa0404710:intron 30.0%
TGAATCATTCTTTCTCTCTA+TGG - chr3_2:37184958-37184977 Msa0404710:intron 30.0%
ATTCTTTCTCTCTATGGTAA+GGG - chr3_2:37184964-37184983 Msa0404710:intron 30.0%
! ACAAAAAGTACATCTAAACC+AGG + chr3_2:37185060-37185079 None:intergenic 30.0%
!!! TAGCATTGTACTTTTGAAGT+AGG + chr3_2:37185083-37185102 None:intergenic 30.0%
AGAATTAGCAATTTCAATGG+TGG + chr3_2:37185283-37185302 None:intergenic 30.0%
GACACCAAATTCTTCTTTAT+AGG - chr3_2:37185666-37185685 Msa0404710:five_prime_UTR 30.0%
CTTCTCTTGCAACAAATATT+AGG - chr3_2:37185703-37185722 Msa0404710:five_prime_UTR 30.0%
AAATGTAGGGACAAGAAAGT+AGG - chr3_2:37180501-37180520 Msa0404710:three_prime_UTR 35.0%
TGTCCAAGTAGTAGATAAGA+GGG + chr3_2:37180617-37180636 None:intergenic 35.0%
TTGTCCAAGTAGTAGATAAG+AGG + chr3_2:37180618-37180637 None:intergenic 35.0%
TTCATTAGCATGACCAAAAG+TGG + chr3_2:37180954-37180973 None:intergenic 35.0%
!! TTGGTGTTTAAAGAGTGTCT+TGG - chr3_2:37181134-37181153 Msa0404710:intron 35.0%
!! TGGTGTTTAAAGAGTGTCTT+GGG - chr3_2:37181135-37181154 Msa0404710:intron 35.0%
TTATATAGGTGGTTCTTTGG+TGG - chr3_2:37181599-37181618 Msa0404710:intron 35.0%
TATATAGGTGGTTCTTTGGT+GGG - chr3_2:37181600-37181619 Msa0404710:intron 35.0%
AAATTTCAAGCAAGGGAAGA+TGG - chr3_2:37181660-37181679 Msa0404710:intron 35.0%
!! GGGAAGATGGATTATGTTAA+TGG - chr3_2:37181673-37181692 Msa0404710:intron 35.0%
! ATGGATTATGTTAATGGACC+AGG - chr3_2:37181679-37181698 Msa0404710:intron 35.0%
CTTAATTCCATAATCTCTCC+AGG - chr3_2:37182034-37182053 Msa0404710:intron 35.0%
AAGTTGTTTATCGAAAGACG+CGG - chr3_2:37182183-37182202 Msa0404710:intron 35.0%
! GGTCTAATTGATTCTCTGTT+TGG + chr3_2:37182454-37182473 None:intergenic 35.0%
ACAAAATAATGGCCTGAGAT+TGG - chr3_2:37182697-37182716 Msa0404710:CDS 35.0%
!! AACGTTTTTGCATTTGGTTC+AGG - chr3_2:37182785-37182804 Msa0404710:intron 35.0%
AAAGATACAATACGATCTCC+AGG + chr3_2:37182851-37182870 None:intergenic 35.0%
CGTATTGTATCTTTCGTGAT+TGG - chr3_2:37182857-37182876 Msa0404710:intron 35.0%
TGATTCTGCACACACTATAA+AGG - chr3_2:37182997-37183016 Msa0404710:intron 35.0%
ATCAAGAAATCAACATGCGA+AGG + chr3_2:37183300-37183319 None:intergenic 35.0%
TTCACTTGCAACGTCATAAT+TGG - chr3_2:37183460-37183479 Msa0404710:CDS 35.0%
AAATCCAATACCAGTAGGAA+GGG + chr3_2:37183774-37183793 None:intergenic 35.0%
! TTGAAGCTTCAATGGCTTTA+GGG + chr3_2:37183808-37183827 None:intergenic 35.0%
! TTTGAAGCTTCAATGGCTTT+AGG + chr3_2:37183809-37183828 None:intergenic 35.0%
!! CACTTCGAGTTTTCTTTGAT+TGG - chr3_2:37183840-37183859 Msa0404710:intron 35.0%
TACCTGAAGTTCTACAAGAT+GGG - chr3_2:37183869-37183888 Msa0404710:intron 35.0%
TCTACAAGATGGGAACTTAT+TGG - chr3_2:37183879-37183898 Msa0404710:intron 35.0%
AAGACCATAAAGAAGCTGAA+TGG + chr3_2:37183918-37183937 None:intergenic 35.0%
! AGCTCTTGATCTGATTTTTG+AGG - chr3_2:37183943-37183962 Msa0404710:intron 35.0%
!! CTTGATCTGATTTTTGAGGA+AGG - chr3_2:37183947-37183966 Msa0404710:intron 35.0%
GTTCAATATCTGTTATGCGA+TGG + chr3_2:37184178-37184197 None:intergenic 35.0%
AATGTATCGTGGAACAATAG+CGG + chr3_2:37184204-37184223 None:intergenic 35.0%
!! TTTAGTACAAAGCGTTGTAG+AGG - chr3_2:37184225-37184244 Msa0404710:intron 35.0%
TAACTCAGTATCTTCAAACG+CGG + chr3_2:37184277-37184296 None:intergenic 35.0%
AAGTCAATGAATCTGATAGG+TGG - chr3_2:37184331-37184350 Msa0404710:intron 35.0%
AATCTGATAGGTGGTCAATA+TGG - chr3_2:37184340-37184359 Msa0404710:intron 35.0%
ACTAAACAAAGTTGCTGGAA+AGG - chr3_2:37184525-37184544 Msa0404710:CDS 35.0%
! GTTTTCAGAATTGGACATCT+TGG - chr3_2:37184547-37184566 Msa0404710:CDS 35.0%
CACATAGCTATCAAGAGTTT+AGG + chr3_2:37184599-37184618 None:intergenic 35.0%
! CTAAACTCTTGATAGCTATG+TGG - chr3_2:37184597-37184616 Msa0404710:CDS 35.0%
! TTAACTATATGTATCGGTGG+CGG + chr3_2:37184657-37184676 None:intergenic 35.0%
TTACGTTTCAGTGTTGTATC+AGG - chr3_2:37184702-37184721 Msa0404710:exon 35.0%
TACGTTTCAGTGTTGTATCA+GGG - chr3_2:37184703-37184722 Msa0404710:exon 35.0%
CATATTAGGAAGACCCTAAA+AGG + chr3_2:37184801-37184820 None:intergenic 35.0%
CATTCTTTCTCTCTATGGTA+AGG - chr3_2:37184963-37184982 Msa0404710:intron 35.0%
CCAGGATGGTTAGAATTTAA+AGG + chr3_2:37185042-37185061 None:intergenic 35.0%
CCTTTAAATTCTAACCATCC+TGG - chr3_2:37185039-37185058 Msa0404710:intron 35.0%
AAAGTACATCTAAACCAGGA+TGG + chr3_2:37185056-37185075 None:intergenic 35.0%
! TGTTGGTTACCCAGTAAAAT+TGG - chr3_2:37185367-37185386 Msa0404710:intron 35.0%
GTTGGTTACCCAGTAAAATT+GGG - chr3_2:37185368-37185387 Msa0404710:intron 35.0%
ATTGTTCTGTAAGTATGCAC+TGG + chr3_2:37185411-37185430 None:intergenic 35.0%
ATATTCCTCTCATTCCTTCA+AGG - chr3_2:37185429-37185448 Msa0404710:intron 35.0%
CATGTAACTCAAATCCTTGA+AGG + chr3_2:37185446-37185465 None:intergenic 35.0%
! CTTCAAGGATTTGAGTTACA+TGG - chr3_2:37185444-37185463 Msa0404710:intron 35.0%
GTCTTCAAGAGAGTTCAAAA+GGG + chr3_2:37185545-37185564 None:intergenic 35.0%
TCTGTGTGTGTAATTAGTCA+TGG - chr3_2:37185800-37185819 Msa0404710:five_prime_UTR 35.0%
TCTCCCTCTTATCTACTACT+TGG - chr3_2:37180611-37180630 Msa0404710:three_prime_UTR 40.0%
TCTACTACTTGGACAAGACA+TGG - chr3_2:37180622-37180641 Msa0404710:three_prime_UTR 40.0%
! TCAGGTAGTTTGGTGAAGTA+TGG + chr3_2:37180750-37180769 None:intergenic 40.0%
ATACTTCACCAAACTACCTG+AGG - chr3_2:37180749-37180768 Msa0404710:three_prime_UTR 40.0%
AAACTCACTTTGACACCACT+TGG + chr3_2:37181294-37181313 None:intergenic 40.0%
TACCATGGAACTATGAAGCA+CGG - chr3_2:37181373-37181392 Msa0404710:intron 40.0%
GTGTATGTGCTTCATAACCA+TGG - chr3_2:37181490-37181509 Msa0404710:intron 40.0%
ACAAAGAGATGGTTTCTTCC+TGG + chr3_2:37181700-37181719 None:intergenic 40.0%
AGAAACCATCTCTTTGTTCC+AGG - chr3_2:37181703-37181722 Msa0404710:intron 40.0%
GAAACCATCTCTTTGTTCCA+GGG - chr3_2:37181704-37181723 Msa0404710:intron 40.0%
AACGATAGTCCTCGTTGTTT+CGG + chr3_2:37181768-37181787 None:intergenic 40.0%
! TTTTGTCAGAGCTGGAATTG+CGG + chr3_2:37181794-37181813 None:intergenic 40.0%
! AGTAGAGTTTTTGTCAGAGC+TGG + chr3_2:37181802-37181821 None:intergenic 40.0%
CCAGTAGTAGGGATAAGAAA+TGG + chr3_2:37181865-37181884 None:intergenic 40.0%
CCATTTCTTATCCCTACTAC+TGG - chr3_2:37181862-37181881 Msa0404710:CDS 40.0%
GTGCAACAATACCAGTAGTA+GGG + chr3_2:37181876-37181895 None:intergenic 40.0%
AAGCTATCCTGGAGAGATTA+TGG + chr3_2:37182044-37182063 None:intergenic 40.0%
AATCTCTCCAGGATAGCTTA+TGG - chr3_2:37182045-37182064 Msa0404710:intron 40.0%
ACTCTTTCCATAAGCTATCC+TGG + chr3_2:37182055-37182074 None:intergenic 40.0%
AGTTGTTTATCGAAAGACGC+GGG - chr3_2:37182184-37182203 Msa0404710:intron 40.0%
CAGAGAATCAATTAGACCAC+TGG - chr3_2:37182456-37182475 Msa0404710:CDS 40.0%
GAGCATCATCCTGATTACTA+AGG + chr3_2:37182486-37182505 None:intergenic 40.0%
! TTTGCATTTGGTTCAGGTAC+CGG - chr3_2:37182791-37182810 Msa0404710:intron 40.0%
! TTGGCCAATTCAGTTTGCTT+TGG - chr3_2:37182876-37182895 Msa0404710:intron 40.0%
! TGGCCAATTCAGTTTGCTTT+GGG - chr3_2:37182877-37182896 Msa0404710:intron 40.0%
CAACCCAAAGCAAACTGAAT+TGG + chr3_2:37182883-37182902 None:intergenic 40.0%
TCGATGTTGTGGAAAGTGAA+TGG - chr3_2:37182930-37182949 Msa0404710:intron 40.0%
CGATGTTGTGGAAAGTGAAT+GGG - chr3_2:37182931-37182950 Msa0404710:intron 40.0%
GATGTTGTGGAAAGTGAATG+GGG - chr3_2:37182932-37182951 Msa0404710:intron 40.0%
GTTCATAATGAGACTGCAAC+TGG - chr3_2:37183031-37183050 Msa0404710:intron 40.0%
!! AACTGGTGTCACCAATAACT+TGG - chr3_2:37183048-37183067 Msa0404710:intron 40.0%
TCTAACTGTGGCCAAGTTAT+TGG + chr3_2:37183062-37183081 None:intergenic 40.0%
GCCACAGTTAGAAAACTTCT+CGG - chr3_2:37183070-37183089 Msa0404710:intron 40.0%
! ACCGAGAAGTTTTCTAACTG+TGG + chr3_2:37183074-37183093 None:intergenic 40.0%
ATGTGTGTACAATGACAGCT+TGG + chr3_2:37183143-37183162 None:intergenic 40.0%
CTCCTAGTTTCACTGTTCAA+TGG - chr3_2:37183164-37183183 Msa0404710:intron 40.0%
GACCATTGAACAGTGAAACT+AGG + chr3_2:37183169-37183188 None:intergenic 40.0%
ATGGCACTCACATTGTAGTT+TGG - chr3_2:37183620-37183639 Msa0404710:intron 40.0%
AATACCAGTAGGAAGGGAAA+GGG + chr3_2:37183768-37183787 None:intergenic 40.0%
CAAATCCAATACCAGTAGGA+AGG + chr3_2:37183775-37183794 None:intergenic 40.0%
! TCCTACTGGTATTGGATTTG+TGG - chr3_2:37183775-37183794 Msa0404710:intron 40.0%
ACCACAAATCCAATACCAGT+AGG + chr3_2:37183779-37183798 None:intergenic 40.0%
!!! GGCAGATTTTGAAGCTTCAA+TGG + chr3_2:37183816-37183835 None:intergenic 40.0%
CTACCTGAAGTTCTACAAGA+TGG - chr3_2:37183868-37183887 Msa0404710:intron 40.0%
TTCCCATCTTGTAGAACTTC+AGG + chr3_2:37183874-37183893 None:intergenic 40.0%
! AGCTGAATGGAAGGAGTATA+TGG + chr3_2:37183905-37183924 None:intergenic 40.0%
CCATAAAGAAGCTGAATGGA+AGG + chr3_2:37183914-37183933 None:intergenic 40.0%
CCTTCCATTCAGCTTCTTTA+TGG - chr3_2:37183911-37183930 Msa0404710:intron 40.0%
CACGCAAATTATGTCTTACC+TGG + chr3_2:37184017-37184036 None:intergenic 40.0%
!! TGGTAAATACAGACTTGCTG+TGG - chr3_2:37184360-37184379 Msa0404710:intron 40.0%
!! TAAATACAGACTTGCTGTGG+AGG - chr3_2:37184363-37184382 Msa0404710:intron 40.0%
ATTGCACACAAAAGGAAGAG+TGG - chr3_2:37184401-37184420 Msa0404710:intron 40.0%
GTTGTTCCTCCTTACATTGA+CGG - chr3_2:37184448-37184467 Msa0404710:intron 40.0%
TTGGGACTAAACAAAGTTGC+TGG - chr3_2:37184520-37184539 Msa0404710:CDS 40.0%
! GCTGGAAAGGTTTTCAGAAT+TGG - chr3_2:37184538-37184557 Msa0404710:CDS 40.0%
GGCTCCAATTTCATCTATCA+GGG + chr3_2:37184623-37184642 None:intergenic 40.0%
TAATGTGTCAATGTCGTGTC+TGG - chr3_2:37185206-37185225 Msa0404710:intron 40.0%
TGTTAGTGTCTGTGCTTCAT+AGG - chr3_2:37185229-37185248 Msa0404710:intron 40.0%
GAGATGATACTCAGAGATGT+TGG - chr3_2:37185350-37185369 Msa0404710:intron 40.0%
TACCCAGTAAAATTGGGAAG+TGG - chr3_2:37185374-37185393 Msa0404710:intron 40.0%
! CTCCACTTCCCAATTTTACT+GGG + chr3_2:37185379-37185398 None:intergenic 40.0%
! ACTCCACTTCCCAATTTTAC+TGG + chr3_2:37185380-37185399 None:intergenic 40.0%
CAAATCCTTGAAGGAATGAG+AGG + chr3_2:37185437-37185456 None:intergenic 40.0%
CGTCTTCAAGAGAGTTCAAA+AGG + chr3_2:37185546-37185565 None:intergenic 40.0%
GGGACAAGAAAGTAGGAGAA+TGG - chr3_2:37180508-37180527 Msa0404710:three_prime_UTR 45.0%
AACTGTAATCTGAGCCACTG+AGG - chr3_2:37180548-37180567 Msa0404710:three_prime_UTR 45.0%
GGGAGAAAATAAGCATCCTG+AGG + chr3_2:37180597-37180616 None:intergenic 45.0%
!! ATGCTAAGAGCATTTGGCAG+TGG - chr3_2:37180704-37180723 Msa0404710:three_prime_UTR 45.0%
! GTTTGGTGAAGTATGGCAGA+AGG + chr3_2:37180743-37180762 None:intergenic 45.0%
TGAGTGTACCTCAGGTAGTT+TGG + chr3_2:37180760-37180779 None:intergenic 45.0%
AGAGTAAGTGAGTGTACCTC+AGG + chr3_2:37180768-37180787 None:intergenic 45.0%
! TGTAATCGTAGGCATCGTGT+CGG + chr3_2:37181413-37181432 None:intergenic 45.0%
TGAAGCACATACACTGACAC+TGG + chr3_2:37181484-37181503 None:intergenic 45.0%
TTTGTCAGAGCTGGAATTGC+GGG + chr3_2:37181793-37181812 None:intergenic 45.0%
CGTGCAACAATACCAGTAGT+AGG + chr3_2:37181877-37181896 None:intergenic 45.0%
TGATTACTAAGGCAGTCCAG+TGG + chr3_2:37182475-37182494 None:intergenic 45.0%
ACTGGACTGCCTTAGTAATC+AGG - chr3_2:37182474-37182493 Msa0404710:CDS 45.0%
TTGACAAACACATTGTCGCC+TGG - chr3_2:37182830-37182849 Msa0404710:intron 45.0%
CTTAGGTGGTAAGGTTCTGT+TGG - chr3_2:37183262-37183281 Msa0404710:intron 45.0%
ATGACACTCCATCAACAAGG+AGG + chr3_2:37183676-37183695 None:intergenic 45.0%
TGGATGACACTCCATCAACA+AGG + chr3_2:37183679-37183698 None:intergenic 45.0%
! ACGGAAATCGAGAGCACAAA+TGG + chr3_2:37183699-37183718 None:intergenic 45.0%
TTGTGCTCTCGATTTCCGTA+TGG - chr3_2:37183700-37183719 Msa0404710:intron 45.0%
TCGATTTCCGTATGGACGAA+TGG - chr3_2:37183708-37183727 Msa0404710:intron 45.0%
CGATTTCCGTATGGACGAAT+GGG - chr3_2:37183709-37183728 Msa0404710:intron 45.0%
GATTTCCGTATGGACGAATG+GGG - chr3_2:37183710-37183729 Msa0404710:intron 45.0%
! GGCTTTCTGAGAACCAGTTA+TGG + chr3_2:37183747-37183766 None:intergenic 45.0%
CAATACCAGTAGGAAGGGAA+AGG + chr3_2:37183769-37183788 None:intergenic 45.0%
CTTTCCCTTCCTACTGGTAT+TGG - chr3_2:37183767-37183786 Msa0404710:intron 45.0%
ATTGCAAGGCACAACCGTTT+AGG - chr3_2:37183983-37184002 Msa0404710:intron 45.0%
ACCTGGTAGCTGTACCTAAA+CGG + chr3_2:37184000-37184019 None:intergenic 45.0%
ACTTCAGCACCGTCAATGTA+AGG + chr3_2:37184460-37184479 None:intergenic 45.0%
! ACGGTGCTGAAGTTGTTAGA+AGG - chr3_2:37184467-37184486 Msa0404710:intron 45.0%
! CGGTGCTGAAGTTGTTAGAA+GGG - chr3_2:37184468-37184487 Msa0404710:intron 45.0%
CTGAAGTTGTTAGAAGGGCA+TGG - chr3_2:37184473-37184492 Msa0404710:intron 45.0%
ACATCTTGGCAACTTGAACG+AGG - chr3_2:37184561-37184580 Msa0404710:CDS 45.0%
GTGGCCCTGATAGATGAAAT+TGG - chr3_2:37184616-37184635 Msa0404710:CDS 45.0%
CGGCTCCAATTTCATCTATC+AGG + chr3_2:37184624-37184643 None:intergenic 45.0%
GATGAAATTGGAGCCGTATC+CGG - chr3_2:37184628-37184647 Msa0404710:CDS 45.0%
! TGGCTTACGGCTTACCTTTT+AGG - chr3_2:37184784-37184803 Msa0404710:intron 45.0%
! GGCTTACGGCTTACCTTTTA+GGG - chr3_2:37184785-37184804 Msa0404710:intron 45.0%
CACATGAGTCAATGTCGAGT+TGG + chr3_2:37185145-37185164 None:intergenic 45.0%
! CAACTATTGGGTTGTCTTGC+TGG - chr3_2:37185323-37185342 Msa0404710:intron 45.0%
GATGAAGTGGAACACCTCAG+TGG + chr3_2:37180565-37180584 None:intergenic 50.0%
GAGGCTGTGAATGGATGAAG+TGG + chr3_2:37180578-37180597 None:intergenic 50.0%
CTTCATCCATTCACAGCCTC+AGG - chr3_2:37180578-37180597 Msa0404710:three_prime_UTR 50.0%
AAGCATCCTGAGGCTGTGAA+TGG + chr3_2:37180587-37180606 None:intergenic 50.0%
GTCCGTGCTTCATAGTTCCA+TGG + chr3_2:37181378-37181397 None:intergenic 50.0%
CATACACTGACACTGGACAC+TGG + chr3_2:37181477-37181496 None:intergenic 50.0%
ACCTGGTCCGGTATGTTAAC+CGG + chr3_2:37181730-37181749 None:intergenic 50.0%
ATAGCACGAATGACCTGGTC+CGG + chr3_2:37181742-37181761 None:intergenic 50.0%
TGCTATGAGCCGAAACAACG+AGG - chr3_2:37181756-37181775 Msa0404710:intron 50.0%
GCTCTTGCTGAACCAATCTC+AGG + chr3_2:37182712-37182731 None:intergenic 50.0%
CACTCCATCAACAAGGAGGA+GGG + chr3_2:37183672-37183691 None:intergenic 50.0%
ACACTCCATCAACAAGGAGG+AGG + chr3_2:37183673-37183692 None:intergenic 50.0%
CTACTCCCCATTCGTCCATA+CGG + chr3_2:37183718-37183737 None:intergenic 50.0%
GGAGTAGATGTGGCCATAAC+TGG - chr3_2:37183731-37183750 Msa0404710:intron 50.0%
AAAGCCCTTTCCCTTCCTAC+TGG - chr3_2:37183761-37183780 Msa0404710:intron 50.0%
ACCGTTTAGGTACAGCTACC+AGG - chr3_2:37183996-37184015 Msa0404710:intron 50.0%
TCAGCACCGTCAATGTAAGG+AGG + chr3_2:37184457-37184476 None:intergenic 50.0%
! ATTGGGTTGTCTTGCTGGTG+TGG - chr3_2:37185328-37185347 Msa0404710:intron 50.0%
TATGAAGCACGGACACGCGT+TGG - chr3_2:37181384-37181403 Msa0404710:intron 55.0%
ACTGGACACTGGACACGACA+CGG + chr3_2:37181466-37181485 None:intergenic 55.0%
CCATCTCTTTGTTCCAGGGC+CGG - chr3_2:37181708-37181727 Msa0404710:intron 55.0%
TCCAGGGCCGGTTAACATAC+CGG - chr3_2:37181720-37181739 Msa0404710:intron 55.0%
GGCTCATAGCACGAATGACC+TGG + chr3_2:37181747-37181766 None:intergenic 55.0%
!! TTGGTTCAGGTACCGGTGCT+TGG - chr3_2:37182798-37182817 Msa0404710:intron 55.0%
!! TGGTTCAGGTACCGGTGCTT+GGG - chr3_2:37182799-37182818 Msa0404710:intron 55.0%
! CAAAGCACTCTCCCAAGCAC+CGG + chr3_2:37182813-37182832 None:intergenic 55.0%
GTGGAAAGTGAATGGGGCTG+TGG - chr3_2:37182938-37182957 Msa0404710:intron 55.0%
GGACGAATGGGGAGTAGATG+TGG - chr3_2:37183721-37183740 Msa0404710:intron 55.0%
!! ACAGACTTGCTGTGGAGGCA+TGG - chr3_2:37184368-37184387 Msa0404710:intron 55.0%
!! CAGACTTGCTGTGGAGGCAT+GGG - chr3_2:37184369-37184388 Msa0404710:intron 55.0%
!! AGACTTGCTGTGGAGGCATG+GGG - chr3_2:37184370-37184389 Msa0404710:intron 55.0%
!! TATGTATCGGTGGCGGACAC+CGG + chr3_2:37184650-37184669 None:intergenic 55.0%
CCGGCCCTGGAACAAAGAGA+TGG + chr3_2:37181711-37181730 None:intergenic 60.0%
TCCGGTATGTTAACCGGCCC+TGG + chr3_2:37181724-37181743 None:intergenic 60.0%
GCCGGTTAACATACCGGACC+AGG - chr3_2:37181726-37181745 Msa0404710:intron 60.0%
CAAGGAGGAGGGCTGGATGT+TGG + chr3_2:37183661-37183680 None:intergenic 60.0%
CCATCAACAAGGAGGAGGGC+TGG + chr3_2:37183668-37183687 None:intergenic 60.0%
CCAGCCCTCCTCCTTGTTGA+TGG - chr3_2:37183665-37183684 Msa0404710:intron 60.0%
!! TCGGTGGCGGACACCGGATA+CGG + chr3_2:37184644-37184663 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 37180487 37185895 37180487 ID=Msa0404710;Name=Msa0404710
chr3_2 mRNA 37180487 37185895 37180487 ID=Msa0404710-mRNA-1;Parent=Msa0404710;Name=Msa0404710-mRNA-1;_AED=0.16;_eAED=0.16;_QI=356|0.8|0.83|1|0.8|0.66|6|438|417
chr3_2 exon 37180487 37181062 37180487 ID=Msa0404710-mRNA-1:exon:7417;Parent=Msa0404710-mRNA-1
chr3_2 exon 37181800 37182010 37181800 ID=Msa0404710-mRNA-1:exon:7416;Parent=Msa0404710-mRNA-1
chr3_2 exon 37182365 37182731 37182365 ID=Msa0404710-mRNA-1:exon:7415;Parent=Msa0404710-mRNA-1
chr3_2 exon 37183291 37183623 37183291 ID=Msa0404710-mRNA-1:exon:7414;Parent=Msa0404710-mRNA-1
chr3_2 exon 37184499 37184775 37184499 ID=Msa0404710-mRNA-1:exon:7413;Parent=Msa0404710-mRNA-1
chr3_2 exon 37185612 37185895 37185612 ID=Msa0404710-mRNA-1:exon:7412;Parent=Msa0404710-mRNA-1
chr3_2 five_prime_UTR 37185612 37185895 37185612 ID=Msa0404710-mRNA-1:five_prime_utr;Parent=Msa0404710-mRNA-1
chr3_2 five_prime_UTR 37184704 37184775 37184704 ID=Msa0404710-mRNA-1:five_prime_utr;Parent=Msa0404710-mRNA-1
chr3_2 CDS 37184499 37184703 37184499 ID=Msa0404710-mRNA-1:cds;Parent=Msa0404710-mRNA-1
chr3_2 CDS 37183291 37183623 37183291 ID=Msa0404710-mRNA-1:cds;Parent=Msa0404710-mRNA-1
chr3_2 CDS 37182365 37182731 37182365 ID=Msa0404710-mRNA-1:cds;Parent=Msa0404710-mRNA-1
chr3_2 CDS 37181800 37182010 37181800 ID=Msa0404710-mRNA-1:cds;Parent=Msa0404710-mRNA-1
chr3_2 CDS 37180925 37181062 37180925 ID=Msa0404710-mRNA-1:cds;Parent=Msa0404710-mRNA-1
chr3_2 three_prime_UTR 37180487 37180924 37180487 ID=Msa0404710-mRNA-1:three_prime_utr;Parent=Msa0404710-mRNA-1
Gene Sequence

>Msa0404710

ATGGATTATGTTAATGGACCAGGAAGAAACCATCTCTTTGTTCCAGGGCCGGTTAACATACCGGACCAGGTCATTCGTGCTATGAGCCGAAACAACGAGGACTATCGTTCTCCCGCAATTCCAGCTCTGACAAAAACTCTACTTGAAGATGTCAAGAAGATTTTCAAGACTACTACTGGAACTCCATTTCTTATCCCTACTACTGGATATGGTTATGATGTTATTTGTAATAACGTTTTTGCATTTGGTTCAGGTACCGGTGCTTGGGAGAGTGCTTTGACAAACACATTGTCGCCTGGAGATCGTATTGTATCTTTCGTGATTGGCCAATTCAGTTTGCTTTGGGTTGATCAGCAGCAACGCCTTAAATTTAATGTCGATGTTGTGGAAAGTGAATGGGGCTGTGGTGCTGATCTCGACATTCTAGAATCAAAACTTGCTTCTGATTCTGCACACACTATAAAGGCTATTTGCATTGTTCATAATGAGACTGCAACTGGTGTCACCAATAACTTGGCCACAGTTAGAAAACTTCTCGATGCATACCAACATCCAGCCCTCCTCCTTGTTGATGGAGTGTCATCCATTTGTGCTCTCGATTTCCGTATGGACGAATGGGGAGTAGATGTGGCCATAACTGGTTCTCAGAAAGCCCTTTCCCTTCCTACTGGTATTGGATTTGTGGTTGCAAGCCCTAAAGCCATTGAAGCTTCAAAATCTGCCAAATCACTTCGAGTTTTCTTTGATTGGAGCGACTACCTGAAGTTCTACAAGATGGGAACTTATTGGCCATATACTCCTTCCATTCAGCTTCTTTATGGTCTTAGAGCAGCTCTTGATCTGATTTTTGAGGAAGGACTTGACAATATTATTGCAAGGCACAACCGTTTAGGTACAGCTACCAGACTTGCTGTGGAGGCATGGGGTTTGAAGAATTGCACACAAAAGGAAGAGTGGTTCAGTGACACAGTGACTGCTGTTGTTGTTCCTCCTTACATTGACGGTGCTGAAGTTGTTAGAAGGGCATGGAAAAGATACAATTTGAGCTTAGGTTTGGGACTAAACAAAGTTGCTGGAAAGGTTTTCAGAATTGGACATCTTGGCAACTTGAACGAGTTGCAACTATTGGGTTGTCTTGCTGGTGTGGAGATGATACTCAGAGATGTTGGTTACCCAGTAAAATTGGGAAGTGGAGTTGCTGCTGCCAGTGCATACTTACAGAACAATATTCCTCTCATTCCTTCAAGGATTTGA

Protein sequence

>Msa0404710

MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKTLLEDVKKIFKTTTGTPFLIPTTGYGYDVICNNVFAFGSGTGAWESALTNTLSPGDRIVSFVIGQFSLLWVDQQQRLKFNVDVVESEWGCGADLDILESKLASDSAHTIKAICIVHNETATGVTNNLATVRKLLDAYQHPALLLVDGVSSICALDFRMDEWGVDVAITGSQKALSLPTGIGFVVASPKAIEASKSAKSLRVFFDWSDYLKFYKMGTYWPYTPSIQLLYGLRAALDLIFEEGLDNIIARHNRLGTATRLAVEAWGLKNCTQKEEWFSDTVTAVVVPPYIDGAEVVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEMILRDVGYPVKLGSGVAAASAYLQNNIPLIPSRI*