AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0750200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0750200 MtrunA17_Chr5g0396291 98.897 272 2 1 1 271 1 272 0.0 549
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0750200 AT1G71500.1 81.731 208 38 0 63 270 79 286 9.89e-119 342

Find 97 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGCTTCCAAACGCAATT+TGG 0.233273 5_2:+3605017 None:intergenic
AACGGCAAAGCAGCTGTTAT+TGG 0.246878 5_2:-3605220 Msa0750200:CDS
TTTGAAGGGGACAGGTTTCT+TGG 0.252403 5_2:-3605152 Msa0750200:CDS
GTACATGATGAGTTAGTTTC+TGG 0.262213 5_2:-3604886 Msa0750200:three_prime_UTR
AAATATTTGCCATTGAAAAT+AGG 0.303614 5_2:-3606690 Msa0750200:CDS
GCTACTGAAATTCTCTTTAG+TGG 0.318956 5_2:-3605441 Msa0750200:CDS
TATTGGATTCCTTCTGTTGT+TGG 0.321162 5_2:-3605203 Msa0750200:CDS
CACTTGATGCAAGATTTCTT+TGG 0.325249 5_2:+3604759 None:intergenic
AATTAGACATTGGCCGTGTT+TGG 0.329014 5_2:-3605100 Msa0750200:exon
GATGAGAGTCAACTGGGATT+TGG 0.344981 5_2:-3605268 Msa0750200:CDS
ACTCTCAGAACAGGATTGTT+TGG 0.366935 5_2:+3605561 None:intergenic
TGTTTGGATGCACATATCTT+TGG 0.368547 5_2:-3604713 Msa0750200:three_prime_UTR
GAAGAGCAGGAGAGGGATAG+AGG 0.369307 5_2:+3606964 None:intergenic
AGCGCCGTCACCGGCACAAC+CGG 0.370822 5_2:+3606781 None:intergenic
AGGTTGTAAAATTAATTTCC+AGG 0.388562 5_2:-3604686 Msa0750200:three_prime_UTR
GACATCGGTTGCTGTTATAC+CGG 0.393967 5_2:+3605407 None:intergenic
AGTGTGTGTTTGAGAAGAGC+AGG 0.401321 5_2:+3606951 None:intergenic
TGGCGGGAGAGGAGAAGAAA+AGG 0.404281 5_2:+3606901 None:intergenic
CAAATTGCGTTTGGAAGCAT+TGG 0.405142 5_2:-3605016 Msa0750200:three_prime_UTR
AGTTTCTGTTTCTGCATTTG+TGG 0.405312 5_2:+3607043 None:intergenic
ACTTATCAGTTCACCGGCAT+TGG 0.405348 5_2:+3605059 None:intergenic
GTTGGTAGCGGCCATGGAAA+TGG 0.411203 5_2:+3606987 None:intergenic
TATGACTGTTTAGGTTAGAA+TGG 0.417094 5_2:-3605296 Msa0750200:intron
GTGACTAATCTCAGAGACTT+TGG 0.420533 5_2:+3606859 None:intergenic
GTTAAGTTAGCATACATGTT+TGG 0.427236 5_2:-3604729 Msa0750200:three_prime_UTR
GAGTTCTAACACCTGCTTTG+AGG 0.431159 5_2:-3605542 Msa0750200:CDS
AAGAGCAGGAGAGGGATAGA+GGG 0.443083 5_2:+3606965 None:intergenic
TCGCGTCTCCAAATTGCGTT+TGG 0.447747 5_2:-3605025 Msa0750200:three_prime_UTR
TAGAGGGTTGGTAGCGGCCA+TGG 0.452401 5_2:+3606981 None:intergenic
TGACTAATCTCAGAGACTTT+GGG 0.453570 5_2:+3606860 None:intergenic
CGGTGACGGCGCTGCCGAGA+GGG 0.459160 5_2:-3606771 Msa0750200:CDS
AACTGGGATTTGGTTTCAAT+AGG 0.460026 5_2:-3605258 Msa0750200:CDS
AGCGGCCATGGAAATGGAAA+TGG 0.462764 5_2:+3606993 None:intergenic
CCATTCCATTTCCATTTCCA+TGG 0.463549 5_2:-3606998 Msa0750200:exon
AGCGGTTAGAGTGGCGGGAG+AGG 0.473023 5_2:+3606890 None:intergenic
GAGATTAGTCACTACGTGTA+AGG 0.479268 5_2:-3606848 Msa0750200:CDS
GGTGGTTGATGAGAGTCAAC+TGG 0.480124 5_2:-3605275 Msa0750200:CDS
AGCACATTTGATCTAAGAAC+AGG 0.481228 5_2:-3605603 Msa0750200:CDS
TCAGAATAAGCACCTTCAGC+AGG 0.482430 5_2:+3606664 None:intergenic
GGTGTTAGAACTCTCAGAAC+AGG 0.487394 5_2:+3605552 None:intergenic
GTGTTTGAGAAGAGCAGGAG+AGG 0.489201 5_2:+3606956 None:intergenic
TCTAAGAACAGGAGAGATCA+AGG 0.490541 5_2:-3605592 Msa0750200:CDS
TGCGTAGCGGTTAGAGTGGC+GGG 0.497650 5_2:+3606885 None:intergenic
GCTGAAGGTGCTTATTCTGA+GGG 0.503715 5_2:-3606661 Msa0750200:CDS
GTAACTAACCTGTGTGAGCT+TGG 0.505958 5_2:+3606627 None:intergenic
GCAGGAGAGGGATAGAGGGT+TGG 0.508740 5_2:+3606969 None:intergenic
TGCTGAAGGTGCTTATTCTG+AGG 0.509178 5_2:-3606662 Msa0750200:CDS
TGTTTGAGAAGAGCAGGAGA+GGG 0.509351 5_2:+3606957 None:intergenic
CGGCGCTGCCGAGAGGGGAG+AGG 0.510141 5_2:-3606765 Msa0750200:CDS
TGAAATTCTCTTTAGTGGAA+AGG 0.514051 5_2:-3605436 Msa0750200:CDS
TCAAATGTGCTGTCAGTTGT+TGG 0.515547 5_2:+3605615 None:intergenic
GGTAGCATTCTTTCCAATGC+CGG 0.521169 5_2:-3605072 Msa0750200:three_prime_UTR
AAACTGGGTTCCGGTTGTGC+CGG 0.521653 5_2:-3606791 Msa0750200:CDS
ACAAAGAGGTTCCTCAAAGC+AGG 0.529140 5_2:+3605531 None:intergenic
GAAAAGGTTTACGTGGGAGA+AGG 0.529528 5_2:+3606917 None:intergenic
ATGCACATATCTTTGGTGAC+AGG 0.530497 5_2:-3604706 Msa0750200:three_prime_UTR
AGGAGAAGAAAAGGTTTACG+TGG 0.531404 5_2:+3606910 None:intergenic
AGCATCAGATTTGAAACCTC+CGG 0.532026 5_2:+3605464 None:intergenic
AATATTTATATCAGCATCAC+CGG 0.534811 5_2:-3605483 Msa0750200:CDS
CCTCTCGGCAGCGCCGTCAC+CGG 0.535950 5_2:+3606772 None:intergenic
GGTTCCGGTTGTGCCGGTGA+CGG 0.540591 5_2:-3606785 Msa0750200:CDS
CATTGGCCGTGTTTGGATTG+CGG 0.546897 5_2:-3605093 Msa0750200:three_prime_UTR
GAGGGATAGAGGGTTGGTAG+CGG 0.549456 5_2:+3606975 None:intergenic
GTGCGTAGCGGTTAGAGTGG+CGG 0.551558 5_2:+3606884 None:intergenic
CAAATGTGCTGTCAGTTGTT+GGG 0.553575 5_2:+3605616 None:intergenic
ACATCGGTTGCTGTTATACC+GGG 0.553591 5_2:+3605408 None:intergenic
TTTGCTACTTATCAGTTCAC+CGG 0.556477 5_2:+3605053 None:intergenic
TTACGTGGGAGAAGGAAATG+AGG 0.558204 5_2:+3606925 None:intergenic
CCATGGAAATGGAAATGGAA+TGG 0.558450 5_2:+3606998 None:intergenic
GGAGAAGAAAAGGTTTACGT+GGG 0.562615 5_2:+3606911 None:intergenic
CCGGTGACGGCGCTGCCGAG+AGG 0.566317 5_2:-3606772 Msa0750200:CDS
CAGAATAAGCACCTTCAGCA+GGG 0.566319 5_2:+3606665 None:intergenic
AGGCGTGTCATAATTCAAGA+AGG 0.569370 5_2:-3606745 Msa0750200:CDS
AGTCCACACAATAACATATG+AGG 0.570859 5_2:+3607079 None:intergenic
TAATGCTCTCAATTAGACAT+TGG 0.572812 5_2:-3605110 Msa0750200:exon
TTTAGTGGAAAGGCTCAGCC+CGG 0.582505 5_2:-3605426 Msa0750200:CDS
TTTGGACGACTCTTCAGCAA+CGG 0.582913 5_2:+3606813 None:intergenic
GAAAATAGGTCCCCTGCTGA+AGG 0.583894 5_2:-3606676 Msa0750200:CDS
ATGGAATGGAGTTTGTGAGA+AGG 0.590618 5_2:+3607012 None:intergenic
GGCGTGTCATAATTCAAGAA+GGG 0.590708 5_2:-3606744 Msa0750200:CDS
GACTGTTTAGGTTAGAATGG+TGG 0.593299 5_2:-3605293 Msa0750200:intron
GGTGACGGCGCTGCCGAGAG+GGG 0.594296 5_2:-3606770 Msa0750200:CDS
TATCCTCATATGTTATTGTG+TGG 0.594882 5_2:-3607082 Msa0750200:five_prime_UTR
GTTCGAAATCCAACAACAGA+AGG 0.602476 5_2:+3605194 None:intergenic
GAGACTTTGGGCGTGCGTAG+CGG 0.602913 5_2:+3606872 None:intergenic
GGCGTGCGTAGCGGTTAGAG+TGG 0.612488 5_2:+3606881 None:intergenic
ATGACACGCCTCTCCCCTCT+CGG 0.613589 5_2:+3606757 None:intergenic
TACACTACTAGATAGATACA+AGG 0.628298 5_2:+3604910 None:intergenic
GCGTGTCATAATTCAAGAAG+GGG 0.628961 5_2:-3606743 Msa0750200:CDS
AGGAAGAACGAAATAATCAA+CGG 0.648966 5_2:-3605238 Msa0750200:CDS
ATGCTACCGCAATCCAAACA+CGG 0.653617 5_2:+3605087 None:intergenic
AGAATAAGCACCTTCAGCAG+GGG 0.654961 5_2:+3606666 None:intergenic
GAACAGGAGAGATCAAGGAA+TGG 0.658017 5_2:-3605587 Msa0750200:CDS
ATTTATATCAGCATCACCGG+AGG 0.666199 5_2:-3605480 Msa0750200:CDS
TACCTCGTCAACATTGACAT+CGG 0.669152 5_2:+3605392 None:intergenic
AACCGATGTCAATGTTGACG+AGG 0.684840 5_2:-3605394 Msa0750200:intron
GTGGTTGATGAGAGTCAACT+GGG 0.691875 5_2:-3605274 Msa0750200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGCACTTATTAAAATAAT+TGG - chr5_2:3605171-3605190 Msa0750200:CDS 15.0%
!!! AGTCATTGAATTTTAAAATA+AGG + chr5_2:3605364-3605383 None:intergenic 15.0%
!!! ATTTTAAAATTCAATGACTA+TGG - chr5_2:3605365-3605384 Msa0750200:intron 15.0%
!!! TCTTTTCATTTACAAATTTT+TGG + chr5_2:3605585-3605604 None:intergenic 15.0%
!!! ATTTTTTTTTATGACTGTTT+AGG - chr5_2:3606403-3606422 Msa0750200:intron 15.0%
!! AAAAATACAAGATTGTATAT+TGG + chr5_2:3606848-3606867 None:intergenic 15.0%
!! AAATATTTGCCATTGAAAAT+AGG - chr5_2:3605018-3605037 Msa0750200:three_prime_UTR 20.0%
!!! TTTCTTAGGATAATGTTTTT+AGG - chr5_2:3605104-3605123 Msa0750200:exon 20.0%
!! AAAAGAAAGAAGCAAAAATT+AGG - chr5_2:3605599-3605618 Msa0750200:CDS 20.0%
!! ACTAATTAATAACTTTGCAA+GGG + chr5_2:3605999-3606018 None:intergenic 20.0%
!! ACATTCTGATCAATTATATA+CGG - chr5_2:3606353-3606372 Msa0750200:intron 20.0%
!! GAATGTGAACTATAAAAATT+GGG + chr5_2:3606897-3606916 None:intergenic 20.0%
!! TGAATGTGAACTATAAAAAT+TGG + chr5_2:3606898-3606917 None:intergenic 20.0%
!!! CCTATAAAAGTTGTTTTGAT+AGG + chr5_2:3605134-3605153 None:intergenic 25.0%
!! CCTATCAAAACAACTTTTAT+AGG - chr5_2:3605131-3605150 Msa0750200:CDS 25.0%
! TTGAAATAAGTGATTGCTAT+AGG - chr5_2:3605458-3605477 Msa0750200:CDS 25.0%
!!! GGTCTTTTTTTAAGCAAAAT+TGG - chr5_2:3605479-3605498 Msa0750200:CDS 25.0%
! AAATCTGACCTAATTAAATC+AGG - chr5_2:3605644-3605663 Msa0750200:intron 25.0%
! AATCTGACCTAATTAAATCA+GGG - chr5_2:3605645-3605664 Msa0750200:intron 25.0%
! ACTATTTCCCTGATTTAATT+AGG + chr5_2:3605655-3605674 None:intergenic 25.0%
!! TCTTCATCTTTGATTTACTT+TGG + chr5_2:3605682-3605701 None:intergenic 25.0%
!! AATGCATGATAATGTCAATT+GGG - chr5_2:3605897-3605916 Msa0750200:intron 25.0%
! GACTAATTAATAACTTTGCA+AGG + chr5_2:3606000-3606019 None:intergenic 25.0%
! CATAGAGAAAACAAAACAAT+TGG + chr5_2:3606052-3606071 None:intergenic 25.0%
! AATATTTATATCAGCATCAC+CGG - chr5_2:3606225-3606244 Msa0750200:intron 25.0%
! TAGATACAAGGCATAAAAAA+AGG + chr5_2:3606789-3606808 None:intergenic 25.0%
! AGGTTGTAAAATTAATTTCC+AGG - chr5_2:3607022-3607041 Msa0750200:five_prime_UTR 25.0%
TATCCTCATATGTTATTGTG+TGG - chr5_2:3604626-3604645 Msa0750200:three_prime_UTR 30.0%
TGTCTAAGGAAAGACTAATT+CGG + chr5_2:3605333-3605352 None:intergenic 30.0%
TGTCAACAATCAAAACTACT+AGG - chr5_2:3605523-3605542 Msa0750200:CDS 30.0%
AACAATCAAAACTACTAGGT+TGG - chr5_2:3605527-3605546 Msa0750200:CDS 30.0%
!!! GGTCAGATTTTTTCAACAAT+AGG + chr5_2:3605634-3605653 None:intergenic 30.0%
! CATCTTTGATTTACTTTGGT+GGG + chr5_2:3605678-3605697 None:intergenic 30.0%
! TCATCTTTGATTTACTTTGG+TGG + chr5_2:3605679-3605698 None:intergenic 30.0%
! CAATGCATGATAATGTCAAT+TGG - chr5_2:3605896-3605915 Msa0750200:intron 30.0%
AATTAATAACTTTGCAAGGG+TGG + chr5_2:3605996-3606015 None:intergenic 30.0%
!!! TTGTTTTGTTTTCTCTATGC+AGG - chr5_2:3606053-3606072 Msa0750200:intron 30.0%
! TTTTGACAGGATATACAAAG+AGG + chr5_2:3606194-3606213 None:intergenic 30.0%
TGAAATTCTCTTTAGTGGAA+AGG - chr5_2:3606272-3606291 Msa0750200:intron 30.0%
! TATGACTGTTTAGGTTAGAA+TGG - chr5_2:3606412-3606431 Msa0750200:intron 30.0%
AGGAAGAACGAAATAATCAA+CGG - chr5_2:3606470-3606489 Msa0750200:intron 30.0%
! TTGGATTTCGAACTTTTAAC+AGG - chr5_2:3606524-3606543 Msa0750200:intron 30.0%
! TTTCGAACTTTTAACAGGTA+AGG - chr5_2:3606529-3606548 Msa0750200:intron 30.0%
! TTCGAACTTTTAACAGGTAA+GGG - chr5_2:3606530-3606549 Msa0750200:intron 30.0%
TAATGCTCTCAATTAGACAT+TGG - chr5_2:3606598-3606617 Msa0750200:intron 30.0%
TACACTACTAGATAGATACA+AGG + chr5_2:3606801-3606820 None:intergenic 30.0%
GTTAAGTTAGCATACATGTT+TGG - chr5_2:3606979-3606998 Msa0750200:CDS 30.0%
CAAAAAAAGACATACTTTCC+TGG + chr5_2:3607043-3607062 None:intergenic 30.0%
AGTCCACACAATAACATATG+AGG + chr5_2:3604632-3604651 None:intergenic 35.0%
!! AGTTTCTGTTTCTGCATTTG+TGG + chr5_2:3604668-3604687 None:intergenic 35.0%
TGACTAATCTCAGAGACTTT+GGG + chr5_2:3604851-3604870 None:intergenic 35.0%
! CACAGGTTAGTTACTTTCTT+AGG - chr5_2:3605090-3605109 Msa0750200:three_prime_UTR 35.0%
ATAAGGCAAATCACTGTCTA+AGG + chr5_2:3605347-3605366 None:intergenic 35.0%
TACTGATAAGCTGCTTCATA+TGG + chr5_2:3605707-3605726 None:intergenic 35.0%
!! TTTGTTTTCTCTATGCAGGA+TGG - chr5_2:3606057-3606076 Msa0750200:intron 35.0%
AGCACATTTGATCTAAGAAC+AGG - chr5_2:3606105-3606124 Msa0750200:intron 35.0%
!!! TTTTGTTCGTCTGTTTTGAC+AGG + chr5_2:3606207-3606226 None:intergenic 35.0%
GCTACTGAAATTCTCTTTAG+TGG - chr5_2:3606267-3606286 Msa0750200:intron 35.0%
! AACTGGGATTTGGTTTCAAT+AGG - chr5_2:3606450-3606469 Msa0750200:intron 35.0%
TATTGGATTCCTTCTGTTGT+TGG - chr5_2:3606505-3606524 Msa0750200:intron 35.0%
! TTTGCTACTTATCAGTTCAC+CGG + chr5_2:3606658-3606677 None:intergenic 35.0%
! GTACATGATGAGTTAGTTTC+TGG - chr5_2:3606822-3606841 Msa0750200:CDS 35.0%
CACTTGATGCAAGATTTCTT+TGG + chr5_2:3606952-3606971 None:intergenic 35.0%
TGTTTGGATGCACATATCTT+TGG - chr5_2:3606995-3607014 Msa0750200:exon 35.0%
ATGGAATGGAGTTTGTGAGA+AGG + chr5_2:3604699-3604718 None:intergenic 40.0%
CCATGGAAATGGAAATGGAA+TGG + chr5_2:3604713-3604732 None:intergenic 40.0%
CCATTCCATTTCCATTTCCA+TGG - chr5_2:3604710-3604729 Msa0750200:three_prime_UTR 40.0%
GGAGAAGAAAAGGTTTACGT+GGG + chr5_2:3604800-3604819 None:intergenic 40.0%
AGGAGAAGAAAAGGTTTACG+TGG + chr5_2:3604801-3604820 None:intergenic 40.0%
GTGACTAATCTCAGAGACTT+TGG + chr5_2:3604852-3604871 None:intergenic 40.0%
! GAGATTAGTCACTACGTGTA+AGG - chr5_2:3604860-3604879 Msa0750200:three_prime_UTR 40.0%
TGAAGAGTCGTCCAAAAACT+GGG - chr5_2:3604902-3604921 Msa0750200:three_prime_UTR 40.0%
AGGCGTGTCATAATTCAAGA+AGG - chr5_2:3604963-3604982 Msa0750200:three_prime_UTR 40.0%
GGCGTGTCATAATTCAAGAA+GGG - chr5_2:3604964-3604983 Msa0750200:three_prime_UTR 40.0%
GCGTGTCATAATTCAAGAAG+GGG - chr5_2:3604965-3604984 Msa0750200:three_prime_UTR 40.0%
!! GGGAGACTATATTGCTTTTG+TGG - chr5_2:3604985-3605004 Msa0750200:three_prime_UTR 40.0%
ACTTATATGATTGCCCACGT+GGG - chr5_2:3605209-3605228 Msa0750200:CDS 40.0%
CTAAGGAAAGACTAATTCGG+AGG + chr5_2:3605330-3605349 None:intergenic 40.0%
CTTCACCATAGTCTAAACCT+CGG - chr5_2:3605789-3605808 Msa0750200:intron 40.0%
ACGTACACGAAAAAGGTCTT+GGG + chr5_2:3605870-3605889 None:intergenic 40.0%
AACGTACACGAAAAAGGTCT+TGG + chr5_2:3605871-3605890 None:intergenic 40.0%
CAAATGTGCTGTCAGTTGTT+GGG + chr5_2:3606095-3606114 None:intergenic 40.0%
TCAAATGTGCTGTCAGTTGT+TGG + chr5_2:3606096-3606115 None:intergenic 40.0%
TCTAAGAACAGGAGAGATCA+AGG - chr5_2:3606116-3606135 Msa0750200:intron 40.0%
ACTCTCAGAACAGGATTGTT+TGG + chr5_2:3606150-3606169 None:intergenic 40.0%
ATTTATATCAGCATCACCGG+AGG - chr5_2:3606228-3606247 Msa0750200:intron 40.0%
! AGCATCAGATTTGAAACCTC+CGG + chr5_2:3606247-3606266 None:intergenic 40.0%
TACCTCGTCAACATTGACAT+CGG + chr5_2:3606319-3606338 None:intergenic 40.0%
TATATACGGACTCGTTGCAA+TGG - chr5_2:3606367-3606386 Msa0750200:intron 40.0%
! GACTGTTTAGGTTAGAATGG+TGG - chr5_2:3606415-3606434 Msa0750200:intron 40.0%
GTTCGAAATCCAACAACAGA+AGG + chr5_2:3606517-3606536 None:intergenic 40.0%
! AACAGGTAAGGGTCTTTTGA+AGG - chr5_2:3606541-3606560 Msa0750200:intron 40.0%
! ACAGGTAAGGGTCTTTTGAA+GGG - chr5_2:3606542-3606561 Msa0750200:intron 40.0%
AATTAGACATTGGCCGTGTT+TGG - chr5_2:3606608-3606627 Msa0750200:intron 40.0%
CAATGCTTCCAAACGCAATT+TGG + chr5_2:3606694-3606713 None:intergenic 40.0%
! CAAATTGCGTTTGGAAGCAT+TGG - chr5_2:3606692-3606711 Msa0750200:CDS 40.0%
! ATGCACATATCTTTGGTGAC+AGG - chr5_2:3607002-3607021 Msa0750200:five_prime_UTR 40.0%
TGTTTGAGAAGAGCAGGAGA+GGG + chr5_2:3604754-3604773 None:intergenic 45.0%
AGTGTGTGTTTGAGAAGAGC+AGG + chr5_2:3604760-3604779 None:intergenic 45.0%
TTACGTGGGAGAAGGAAATG+AGG + chr5_2:3604786-3604805 None:intergenic 45.0%
GAAAAGGTTTACGTGGGAGA+AGG + chr5_2:3604794-3604813 None:intergenic 45.0%
TTTGGACGACTCTTCAGCAA+CGG + chr5_2:3604898-3604917 None:intergenic 45.0%
CTGAAGAGTCGTCCAAAAAC+TGG - chr5_2:3604901-3604920 Msa0750200:three_prime_UTR 45.0%
! AGCAGGGGACCTATTTTCAA+TGG + chr5_2:3605030-3605049 None:intergenic 45.0%
AGAATAAGCACCTTCAGCAG+GGG + chr5_2:3605045-3605064 None:intergenic 45.0%
CAGAATAAGCACCTTCAGCA+GGG + chr5_2:3605046-3605065 None:intergenic 45.0%
TCAGAATAAGCACCTTCAGC+AGG + chr5_2:3605047-3605066 None:intergenic 45.0%
!! TGCTGAAGGTGCTTATTCTG+AGG - chr5_2:3605046-3605065 Msa0750200:three_prime_UTR 45.0%
!! GCTGAAGGTGCTTATTCTGA+GGG - chr5_2:3605047-3605066 Msa0750200:three_prime_UTR 45.0%
GAAAAATGCCAAGCTCACAC+AGG - chr5_2:3605073-3605092 Msa0750200:three_prime_UTR 45.0%
GTAACTAACCTGTGTGAGCT+TGG + chr5_2:3605084-3605103 None:intergenic 45.0%
CACTTATATGATTGCCCACG+TGG - chr5_2:3605208-3605227 Msa0750200:CDS 45.0%
GATGAGTCTGAGAACTTGAG+AGG + chr5_2:3605266-3605285 None:intergenic 45.0%
TCAAGTTCTCAGACTCATCC+TGG - chr5_2:3605267-3605286 Msa0750200:CDS 45.0%
CGAGGTTTAGACTATGGTGA+AGG + chr5_2:3605791-3605810 None:intergenic 45.0%
GAAGACCGAGGTTTAGACTA+TGG + chr5_2:3605797-3605816 None:intergenic 45.0%
TGATTTGAGCCAAGGGTTGA+AGG + chr5_2:3605833-3605852 None:intergenic 45.0%
CACGAAAAAGGTCTTGGGTT+GGG + chr5_2:3605865-3605884 None:intergenic 45.0%
ACACGAAAAAGGTCTTGGGT+TGG + chr5_2:3605866-3605885 None:intergenic 45.0%
GCACACAACGTACACGAAAA+AGG + chr5_2:3605877-3605896 None:intergenic 45.0%
GAACAGGAGAGATCAAGGAA+TGG - chr5_2:3606121-3606140 Msa0750200:intron 45.0%
GGTGTTAGAACTCTCAGAAC+AGG + chr5_2:3606159-3606178 None:intergenic 45.0%
! GAGTTCTAACACCTGCTTTG+AGG - chr5_2:3606166-3606185 Msa0750200:intron 45.0%
ACAAAGAGGTTCCTCAAAGC+AGG + chr5_2:3606180-3606199 None:intergenic 45.0%
! ACATCGGTTGCTGTTATACC+GGG + chr5_2:3606303-3606322 None:intergenic 45.0%
! GACATCGGTTGCTGTTATAC+CGG + chr5_2:3606304-3606323 None:intergenic 45.0%
AACCGATGTCAATGTTGACG+AGG - chr5_2:3606314-3606333 Msa0750200:intron 45.0%
!! GTGGTTGATGAGAGTCAACT+GGG - chr5_2:3606434-3606453 Msa0750200:intron 45.0%
GATGAGAGTCAACTGGGATT+TGG - chr5_2:3606440-3606459 Msa0750200:intron 45.0%
AACGGCAAAGCAGCTGTTAT+TGG - chr5_2:3606488-3606507 Msa0750200:intron 45.0%
!! CAGGTAAGGGTCTTTTGAAG+GGG - chr5_2:3606543-3606562 Msa0750200:intron 45.0%
TTTGAAGGGGACAGGTTTCT+TGG - chr5_2:3606556-3606575 Msa0750200:intron 45.0%
ATGCTACCGCAATCCAAACA+CGG + chr5_2:3606624-3606643 None:intergenic 45.0%
GGTAGCATTCTTTCCAATGC+CGG - chr5_2:3606636-3606655 Msa0750200:CDS 45.0%
ACTTATCAGTTCACCGGCAT+TGG + chr5_2:3606652-3606671 None:intergenic 45.0%
AGCGGCCATGGAAATGGAAA+TGG + chr5_2:3604718-3604737 None:intergenic 50.0%
AAGAGCAGGAGAGGGATAGA+GGG + chr5_2:3604746-3604765 None:intergenic 50.0%
GTGTTTGAGAAGAGCAGGAG+AGG + chr5_2:3604755-3604774 None:intergenic 50.0%
GTCGTCCAAAAACTGGGTTC+CGG - chr5_2:3604908-3604927 Msa0750200:three_prime_UTR 50.0%
! CACAACCGGAACCCAGTTTT+TGG + chr5_2:3604916-3604935 None:intergenic 50.0%
GAAAATAGGTCCCCTGCTGA+AGG - chr5_2:3605032-3605051 Msa0750200:three_prime_UTR 50.0%
ATATGATTGCCCACGTGGGT+TGG - chr5_2:3605213-3605232 Msa0750200:CDS 50.0%
!! ATCCTGGTGCCGGTTTATGT+GGG - chr5_2:3605283-3605302 Msa0750200:CDS 50.0%
GTTAGAGGACTTGAAGACCG+AGG + chr5_2:3605809-3605828 None:intergenic 50.0%
CCAAGGGTTGAAGGAGTTAG+AGG + chr5_2:3605824-3605843 None:intergenic 50.0%
CCTCTAACTCCTTCAACCCT+TGG - chr5_2:3605821-3605840 Msa0750200:intron 50.0%
!! GCTCAGCTGATTTGAGCCAA+GGG + chr5_2:3605840-3605859 None:intergenic 50.0%
!! AGCTCAGCTGATTTGAGCCA+AGG + chr5_2:3605841-3605860 None:intergenic 50.0%
TTTAGTGGAAAGGCTCAGCC+CGG - chr5_2:3606282-3606301 Msa0750200:intron 50.0%
!! GGTGGTTGATGAGAGTCAAC+TGG - chr5_2:3606433-3606452 Msa0750200:intron 50.0%
!! AAGGGTCTTTTGAAGGGGAC+AGG - chr5_2:3606548-3606567 Msa0750200:intron 50.0%
CATTGGCCGTGTTTGGATTG+CGG - chr5_2:3606615-3606634 Msa0750200:intron 50.0%
TCGCGTCTCCAAATTGCGTT+TGG - chr5_2:3606683-3606702 Msa0750200:CDS 50.0%
!! GTTGGTAGCGGCCATGGAAA+TGG + chr5_2:3604724-3604743 None:intergenic 55.0%
!! GAGGGATAGAGGGTTGGTAG+CGG + chr5_2:3604736-3604755 None:intergenic 55.0%
GAAGAGCAGGAGAGGGATAG+AGG + chr5_2:3604747-3604766 None:intergenic 55.0%
TGGCGGGAGAGGAGAAGAAA+AGG + chr5_2:3604810-3604829 None:intergenic 55.0%
AAACTGGGTTCCGGTTGTGC+CGG - chr5_2:3604917-3604936 Msa0750200:three_prime_UTR 55.0%
TCTCAGACTCATCCTGGTGC+CGG - chr5_2:3605273-3605292 Msa0750200:CDS 55.0%
!! CATCCTGGTGCCGGTTTATG+TGG - chr5_2:3605282-3605301 Msa0750200:CDS 55.0%
!! TAGAGGGTTGGTAGCGGCCA+TGG + chr5_2:3604730-3604749 None:intergenic 60.0%
GCAGGAGAGGGATAGAGGGT+TGG + chr5_2:3604742-3604761 None:intergenic 60.0%
TGCGTAGCGGTTAGAGTGGC+GGG + chr5_2:3604826-3604845 None:intergenic 60.0%
GTGCGTAGCGGTTAGAGTGG+CGG + chr5_2:3604827-3604846 None:intergenic 60.0%
GAGACTTTGGGCGTGCGTAG+CGG + chr5_2:3604839-3604858 None:intergenic 60.0%
ATGACACGCCTCTCCCCTCT+CGG + chr5_2:3604954-3604973 None:intergenic 60.0%
!! ATTGCCCACGTGGGTTGGTC+TGG - chr5_2:3605218-3605237 Msa0750200:CDS 60.0%
ACCACCAGACCAACCCACGT+GGG + chr5_2:3605225-3605244 None:intergenic 60.0%
!! TGGTGCCGGTTTATGTGGGC+CGG - chr5_2:3605287-3605306 Msa0750200:intron 60.0%
GTCCACCGGCCCACATAAAC+CGG + chr5_2:3605295-3605314 None:intergenic 60.0%
GGTTTATGTGGGCCGGTGGA+CGG - chr5_2:3605294-3605313 Msa0750200:intron 60.0%
GGACCAATCCAACCGTCCAC+CGG + chr5_2:3605309-3605328 None:intergenic 60.0%
! AGCGGTTAGAGTGGCGGGAG+AGG + chr5_2:3604821-3604840 None:intergenic 65.0%
GGCGTGCGTAGCGGTTAGAG+TGG + chr5_2:3604830-3604849 None:intergenic 65.0%
! GGTTCCGGTTGTGCCGGTGA+CGG - chr5_2:3604923-3604942 Msa0750200:three_prime_UTR 65.0%
CACCACCAGACCAACCCACG+TGG + chr5_2:3605226-3605245 None:intergenic 65.0%
GGCCCACATAAACCGGCACC+AGG + chr5_2:3605288-3605307 None:intergenic 65.0%
!! TGCCGGTTTATGTGGGCCGG+TGG - chr5_2:3605290-3605309 Msa0750200:intron 65.0%
TATGTGGGCCGGTGGACGGT+TGG - chr5_2:3605298-3605317 Msa0750200:intron 65.0%
AGCGCCGTCACCGGCACAAC+CGG + chr5_2:3604930-3604949 None:intergenic 70.0%
!! GCCCACGTGGGTTGGTCTGG+TGG - chr5_2:3605221-3605240 Msa0750200:CDS 70.0%
GGGCCGGTGGACGGTTGGAT+TGG - chr5_2:3605303-3605322 Msa0750200:intron 70.0%
CCTCTCGGCAGCGCCGTCAC+CGG + chr5_2:3604939-3604958 None:intergenic 75.0%
! CGGTGACGGCGCTGCCGAGA+GGG - chr5_2:3604937-3604956 Msa0750200:three_prime_UTR 75.0%
! GGTGACGGCGCTGCCGAGAG+GGG - chr5_2:3604938-3604957 Msa0750200:three_prime_UTR 75.0%
!! CCGGTGACGGCGCTGCCGAG+AGG - chr5_2:3604936-3604955 Msa0750200:three_prime_UTR 80.0%
! CGGCGCTGCCGAGAGGGGAG+AGG - chr5_2:3604943-3604962 Msa0750200:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 3604611 3607119 3604611 ID=Msa0750200;Name=Msa0750200
chr5_2 mRNA 3604611 3607119 3604611 ID=Msa0750200-mRNA-1;Parent=Msa0750200;Name=Msa0750200-mRNA-1;_AED=0.00;_eAED=0.00;_QI=118|1|1|1|1|1|3|506|271
chr5_2 exon 3604611 3605305 3604611 ID=Msa0750200-mRNA-1:exon:1354;Parent=Msa0750200-mRNA-1
chr5_2 exon 3605395 3605655 3605395 ID=Msa0750200-mRNA-1:exon:1353;Parent=Msa0750200-mRNA-1
chr5_2 exon 3606636 3607119 3606636 ID=Msa0750200-mRNA-1:exon:1352;Parent=Msa0750200-mRNA-1
chr5_2 five_prime_UTR 3607002 3607119 3607002 ID=Msa0750200-mRNA-1:five_prime_utr;Parent=Msa0750200-mRNA-1
chr5_2 CDS 3606636 3607001 3606636 ID=Msa0750200-mRNA-1:cds;Parent=Msa0750200-mRNA-1
chr5_2 CDS 3605395 3605655 3605395 ID=Msa0750200-mRNA-1:cds;Parent=Msa0750200-mRNA-1
chr5_2 CDS 3605117 3605305 3605117 ID=Msa0750200-mRNA-1:cds;Parent=Msa0750200-mRNA-1
chr5_2 three_prime_UTR 3604611 3605116 3604611 ID=Msa0750200-mRNA-1:three_prime_utr;Parent=Msa0750200-mRNA-1
Gene Sequence

>Msa0750200

ATGGCCGCTACCAACCCTCTATCCCTCTCCTGCTCTTCTCAAACACACACTTCTCCTCATTTCCTTCTCCCACGTAAACCTTTTCTTCTCCTCTCCCGCCACTCTAACCGCTACGCACGCCCAAAGTCTCTGAGATTAGTCACTACGTGTAAGGCAAGTCAAGTGTCCGTTGCTGAAGAGTCGTCCAAAAACTGGGTTCCGGTTGTGCCGGTGACGGCGCTGCCGAGAGGGGAGAGGCGTGTCATAATTCAAGAAGGGGAGACTATATTGCTTTTGTGGTATAAAGATCAAATATTTGCCATTGAAAATAGGTCCCCTGCTGAAGGTGCTTATTCTGAGGGCTTGAAAAATGCCAAGCTCACACAGGATGGTTGTATAGTTTGCCCAACAACTGACAGCACATTTGATCTAAGAACAGGAGAGATCAAGGAATGGTATCCAAACAATCCTGTTCTGAGAGTTCTAACACCTGCTTTGAGGAACCTCTTTGTATATCCTGTCAAAACAGACGAACAAAATATTTATATCAGCATCACCGGAGGTTTCAAATCTGATGCTGCTACTGAAATTCTCTTTAGTGGAAAGGCTCAGCCCGGTATAACAGCAACCGATGTCAATGTTGACGAGGTTAGAATGGTGGTTGATGAGAGTCAACTGGGATTTGGTTTCAATAGGAAGAACGAAATAATCAACGGCAAAGCAGCTGTTATTGGATTCCTTCTGTTGTTGGATTTCGAACTTTTAACAGGTAAGGGTCTTTTGAAGGGGACAGGTTTCTTGGACTTCATATATTCTGCATCTAATGCTCTCAATTAG

Protein sequence

>Msa0750200

MAATNPLSLSCSSQTHTSPHFLLPRKPFLLLSRHSNRYARPKSLRLVTTCKASQVSVAEESSKNWVPVVPVTALPRGERRVIIQEGETILLLWYKDQIFAIENRSPAEGAYSEGLKNAKLTQDGCIVCPTTDSTFDLRTGEIKEWYPNNPVLRVLTPALRNLFVYPVKTDEQNIYISITGGFKSDAATEILFSGKAQPGITATDVNVDEVRMVVDESQLGFGFNRKNEIINGKAAVIGFLLLLDFELLTGKGLLKGTGFLDFIYSASNALN*