AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1132250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1132250 MtrunA17_Chr5g0394411 91.506 259 13 4 1 258 26 276 1.60e-167 469
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1132250 AT5G16810.2 63.793 232 72 4 37 258 52 281 1.60e-99 296
Msa1132250 AT5G16810.1 63.793 232 72 4 37 258 52 281 2.06e-99 296

Find 63 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCATTATAAAGCTTCTTC+AGG 0.278296 7_3:-85110665 Msa1132250:CDS
TCAGGGTGCTTTGAGAGGTT+TGG 0.329693 7_3:-85110647 Msa1132250:CDS
CTAAGTCTTGGAATCAAATA+AGG 0.340376 7_3:+85110439 None:intergenic
ATCCCGTGCATTGTGGATAA+TGG 0.347183 7_3:-85112310 Msa1132250:five_prime_UTR
GGTCGAGCCATTGGCAACTA+TGG 0.348534 7_3:-85112119 Msa1132250:CDS
ACCCCACCAGCTCGTGTTCC+GGG 0.371480 7_3:+85111111 None:intergenic
CTTATTTGATTCCAAGACTT+AGG 0.379698 7_3:-85110438 Msa1132250:CDS
AACCCCACCAGCTCGTGTTC+CGG 0.404587 7_3:+85111110 None:intergenic
AGGTATCAAAACTGTCTTCA+TGG 0.420473 7_3:-85110729 Msa1132250:CDS
GTGGAGGTTAAGATGAAAGC+AGG 0.431813 7_3:+85112233 None:intergenic
AAATTTGAGAGTGGATTTAG+TGG 0.435915 7_3:+85112214 None:intergenic
TTATTTGATTCCAAGACTTA+GGG 0.437676 7_3:-85110437 Msa1132250:CDS
TACTTGAGAGATACAGAAAA+TGG 0.439660 7_3:+85110583 None:intergenic
CAGAAAATGGTCCAAGACTC+TGG 0.456172 7_3:+85110596 None:intergenic
TTATGAAGGCAGAGTTTCCC+AGG 0.466570 7_3:-85111926 Msa1132250:CDS
TTCATTATAAAGCTTCTTCA+GGG 0.469217 7_3:-85110664 Msa1132250:CDS
GGTGGGTTTGAAACAACTAC+TGG 0.470427 7_3:-85110922 Msa1132250:CDS
GCAACGCCCATGCTTGTAAA+CGG 0.479093 7_3:+85112272 None:intergenic
TTCCAAGTGGGTCGAGCCAT+TGG 0.488851 7_3:-85112128 Msa1132250:CDS
ACTTTATCACAAACTCGGAT+TGG 0.497439 7_3:-85112151 Msa1132250:CDS
TGATTATCCGTTTACAAGCA+TGG 0.497476 7_3:-85112279 Msa1132250:exon
CTTCTTCAGGGTGCTTTGAG+AGG 0.501298 7_3:-85110652 Msa1132250:CDS
AAGGCCAAGTCCCTAAGTCT+TGG 0.505677 7_3:+85110427 None:intergenic
TACTTCCAGAGCAGTTCTAA+AGG 0.508594 7_3:-85110973 Msa1132250:intron
TCCCGGAACACGAGCTGGTG+GGG 0.514552 7_3:-85111112 Msa1132250:CDS
GATTCCAAGACTTAGGGACT+TGG 0.521047 7_3:-85110431 Msa1132250:CDS
TGCCAATGGCTCGACCCACT+TGG 0.523390 7_3:+85112126 None:intergenic
GATAGATTACACCAGAGTCT+TGG 0.524389 7_3:-85110607 Msa1132250:CDS
TTACCTGACACTAACAGAAA+AGG 0.524628 7_3:+85110408 None:intergenic
AAGAAGGCAGCGTTAAGATC+AGG 0.525969 7_3:-85112022 Msa1132250:intron
AAGATGAAAGCAGGAAGAAG+AGG 0.526166 7_3:+85112242 None:intergenic
CTTCAACTTTATCACAAACT+CGG 0.529481 7_3:-85112156 Msa1132250:CDS
GATCAATATTCACTTGGTGG+TGG 0.529898 7_3:-85112065 Msa1132250:CDS
ATCTCACTTGAAGGAACATG+TGG 0.539130 7_3:+85111052 None:intergenic
TTGCAGTGCAGGCTTTATGA+AGG 0.544158 7_3:-85111940 Msa1132250:intron
ACTGATCAATATTCACTTGG+TGG 0.549006 7_3:-85112068 Msa1132250:CDS
GATTATCCGTTTACAAGCAT+GGG 0.554666 7_3:-85112278 Msa1132250:exon
AATTATAATGATAATAGTAA+TGG 0.560663 7_3:-85112179 Msa1132250:CDS
AGAACGGGAGTTTGTCTAAG+TGG 0.560791 7_3:+85111901 None:intergenic
GTTTATCCCGGAACACGAGC+TGG 0.561221 7_3:-85111117 Msa1132250:CDS
ATCCCGGAACACGAGCTGGT+GGG 0.565244 7_3:-85111113 Msa1132250:CDS
TATCCCGGAACACGAGCTGG+TGG 0.567710 7_3:-85111114 Msa1132250:CDS
TGAAACAACTACTGGAGAGC+AGG 0.568229 7_3:-85110914 Msa1132250:intron
AAAACTCAAGATGTTCAAGA+AGG 0.570944 7_3:-85112038 Msa1132250:CDS
TTAACAATGAAGGTTTATCC+CGG 0.577939 7_3:-85111129 Msa1132250:intron
CTCCATTATCCACAATGCAC+GGG 0.578695 7_3:+85112308 None:intergenic
GAGTTTGTCTAAGTGGACCC+TGG 0.579200 7_3:+85111908 None:intergenic
AGTTTGTCTAAGTGGACCCT+GGG 0.579559 7_3:+85111909 None:intergenic
ACTCCATTATCCACAATGCA+CGG 0.590209 7_3:+85112307 None:intergenic
AGTACTGATCAATATTCACT+TGG 0.590757 7_3:-85112071 Msa1132250:CDS
TTTGAGAGTGGATTTAGTGG+AGG 0.594256 7_3:+85112217 None:intergenic
TGGGGTTGTAGCAGATATGA+TGG 0.598189 7_3:-85111094 Msa1132250:CDS
TAGTTATATCCCGTGCATTG+TGG 0.599008 7_3:-85112317 Msa1132250:five_prime_UTR
CATGAAACCATAGTTGCCAA+TGG 0.612922 7_3:+85112112 None:intergenic
AACTCGGATTGGTTCCAAGT+GGG 0.614601 7_3:-85112140 Msa1132250:CDS
GCCAGTCAATGAAAAGAAGA+CGG 0.620118 7_3:-85110690 Msa1132250:CDS
TGCAAAAGTTGCGAGTGAGA+AGG 0.637981 7_3:-85110749 Msa1132250:CDS
CATTGTGGATAATGGAGTGT+GGG 0.638172 7_3:-85112302 Msa1132250:five_prime_UTR
GCATTGTGGATAATGGAGTG+TGG 0.639182 7_3:-85112303 Msa1132250:five_prime_UTR
TATGAAGGCAGAGTTTCCCA+GGG 0.644272 7_3:-85111925 Msa1132250:CDS
AAACTCGGATTGGTTCCAAG+TGG 0.701486 7_3:-85112141 Msa1132250:CDS
TCTCACTTGAAGGAACATGT+GGG 0.704718 7_3:+85111053 None:intergenic
TCATGGAATAGCTTTGAACG+AGG 0.717104 7_3:-85110712 Msa1132250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATAATGATAATAGTAA+TGG - chr7_3:85110566-85110585 Msa1132250:intron 10.0%
!! TAATAATAATGTTTCAAATT+TGG + chr7_3:85111593-85111612 None:intergenic 10.0%
!! AATTATAATGATAATAGTAA+TGG - chr7_3:85110566-85110585 Msa1132250:intron 10.0%
!! TAATAATAATGTTTCAAATT+TGG + chr7_3:85111593-85111612 None:intergenic 10.0%
!!! TAAACATTTTGTAATTTGTT+TGG + chr7_3:85111033-85111052 None:intergenic 15.0%
!!! ATTATTACTTTTAACAATGA+AGG - chr7_3:85111606-85111625 Msa1132250:intron 15.0%
!!! TAAACATTTTGTAATTTGTT+TGG + chr7_3:85111033-85111052 None:intergenic 15.0%
!!! ATTATTACTTTTAACAATGA+AGG - chr7_3:85111606-85111625 Msa1132250:intron 15.0%
!!! CTTATTTTGCAGTTTATTTA+TGG + chr7_3:85111000-85111019 None:intergenic 20.0%
!!! ATTTTGGAATATTAACATTG+AGG - chr7_3:85111179-85111198 Msa1132250:intron 20.0%
!! ACTTGTTTAAATGCATAATT+TGG + chr7_3:85111231-85111250 None:intergenic 20.0%
!! ATTCTTAATGAAATGTCTTA+AGG + chr7_3:85111256-85111275 None:intergenic 20.0%
!! AATAAAAGAAAAGTTTGTCT+TGG + chr7_3:85111346-85111365 None:intergenic 20.0%
!!! CTTATTTTGCAGTTTATTTA+TGG + chr7_3:85111000-85111019 None:intergenic 20.0%
!!! ATTTTGGAATATTAACATTG+AGG - chr7_3:85111179-85111198 Msa1132250:intron 20.0%
!! ACTTGTTTAAATGCATAATT+TGG + chr7_3:85111231-85111250 None:intergenic 20.0%
!! ATTCTTAATGAAATGTCTTA+AGG + chr7_3:85111256-85111275 None:intergenic 20.0%
!! AATAAAAGAAAAGTTTGTCT+TGG + chr7_3:85111346-85111365 None:intergenic 20.0%
!! TTTTACTTGAAATTTGAGAG+TGG + chr7_3:85110543-85110562 None:intergenic 25.0%
! ATCATTAATCAGTATGAGAA+TGG + chr7_3:85110771-85110790 None:intergenic 25.0%
!!! GTTGATAATAGTAATACATC+TGG + chr7_3:85111074-85111093 None:intergenic 25.0%
!! TGCAATTTCAACTATCATTT+TGG - chr7_3:85111163-85111182 Msa1132250:intron 25.0%
!!! ATTTGGTTTTTGAGATTGTA+CGG + chr7_3:85111214-85111233 None:intergenic 25.0%
! GGAAAGGCTTATATATAATA+GGG + chr7_3:85111413-85111432 None:intergenic 25.0%
! ATTAAAACTATCTCACTTGA+AGG + chr7_3:85111705-85111724 None:intergenic 25.0%
! AATAACACTATGAACTGATA+TGG + chr7_3:85111732-85111751 None:intergenic 25.0%
!!! ATCTTATGTTACTTTTAGGT+GGG - chr7_3:85111806-85111825 Msa1132250:intron 25.0%
!! TTATTTTCAAATTGAGAGGA+CGG + chr7_3:85111858-85111877 None:intergenic 25.0%
!!! AAGCTTATTTTCAAATTGAG+AGG + chr7_3:85111862-85111881 None:intergenic 25.0%
! TTTCATTATAAAGCTTCTTC+AGG - chr7_3:85112080-85112099 Msa1132250:CDS 25.0%
! TTCATTATAAAGCTTCTTCA+GGG - chr7_3:85112081-85112100 Msa1132250:CDS 25.0%
! ATTACAAGTAAGCATGTTAA+TGG + chr7_3:85112254-85112273 None:intergenic 25.0%
! TTATTTGATTCCAAGACTTA+GGG - chr7_3:85112308-85112327 Msa1132250:five_prime_UTR 25.0%
!! TTTTACTTGAAATTTGAGAG+TGG + chr7_3:85110543-85110562 None:intergenic 25.0%
! ATCATTAATCAGTATGAGAA+TGG + chr7_3:85110771-85110790 None:intergenic 25.0%
!!! GTTGATAATAGTAATACATC+TGG + chr7_3:85111074-85111093 None:intergenic 25.0%
!! TGCAATTTCAACTATCATTT+TGG - chr7_3:85111163-85111182 Msa1132250:intron 25.0%
!!! ATTTGGTTTTTGAGATTGTA+CGG + chr7_3:85111214-85111233 None:intergenic 25.0%
! GGAAAGGCTTATATATAATA+GGG + chr7_3:85111413-85111432 None:intergenic 25.0%
! ATTAAAACTATCTCACTTGA+AGG + chr7_3:85111705-85111724 None:intergenic 25.0%
! AATAACACTATGAACTGATA+TGG + chr7_3:85111732-85111751 None:intergenic 25.0%
!!! ATCTTATGTTACTTTTAGGT+GGG - chr7_3:85111806-85111825 Msa1132250:intron 25.0%
!! TTATTTTCAAATTGAGAGGA+CGG + chr7_3:85111858-85111877 None:intergenic 25.0%
!!! AAGCTTATTTTCAAATTGAG+AGG + chr7_3:85111862-85111881 None:intergenic 25.0%
! TTTCATTATAAAGCTTCTTC+AGG - chr7_3:85112080-85112099 Msa1132250:CDS 25.0%
! TTCATTATAAAGCTTCTTCA+GGG - chr7_3:85112081-85112100 Msa1132250:CDS 25.0%
! ATTACAAGTAAGCATGTTAA+TGG + chr7_3:85112254-85112273 None:intergenic 25.0%
! TTATTTGATTCCAAGACTTA+GGG - chr7_3:85112308-85112327 Msa1132250:five_prime_UTR 25.0%
! AAATTTGAGAGTGGATTTAG+TGG + chr7_3:85110534-85110553 None:intergenic 30.0%
CTTCAACTTTATCACAAACT+CGG - chr7_3:85110589-85110608 Msa1132250:CDS 30.0%
!! AGTACTGATCAATATTCACT+TGG - chr7_3:85110674-85110693 Msa1132250:CDS 30.0%
AAAACTCAAGATGTTCAAGA+AGG - chr7_3:85110707-85110726 Msa1132250:CDS 30.0%
TATGAGAATGGTTAAAGTAG+AGG + chr7_3:85110759-85110778 None:intergenic 30.0%
TGTACGTACCTTAAAAAGAA+CGG + chr7_3:85110863-85110882 None:intergenic 30.0%
! CTCAATTTAGTTCATGAACT+TGG - chr7_3:85110885-85110904 Msa1132250:intron 30.0%
ATACCTTACGAACATATAAG+TGG + chr7_3:85110924-85110943 None:intergenic 30.0%
TAGTAATACATCTGGATCAA+GGG + chr7_3:85111066-85111085 None:intergenic 30.0%
ATAGTAATACATCTGGATCA+AGG + chr7_3:85111067-85111086 None:intergenic 30.0%
GGGAAAGGCTTATATATAAT+AGG + chr7_3:85111414-85111433 None:intergenic 30.0%
ATTATATATAAGCCTTTCCC+TGG - chr7_3:85111414-85111433 Msa1132250:intron 30.0%
AACAGTTGTAAAAGATGTAG+GGG + chr7_3:85111481-85111500 None:intergenic 30.0%
CAACAGTTGTAAAAGATGTA+GGG + chr7_3:85111482-85111501 None:intergenic 30.0%
ACAACAGTTGTAAAAGATGT+AGG + chr7_3:85111483-85111502 None:intergenic 30.0%
TTAACAATGAAGGTTTATCC+CGG - chr7_3:85111616-85111635 Msa1132250:intron 30.0%
!!! CAGCATCTTATGTTACTTTT+AGG - chr7_3:85111802-85111821 Msa1132250:intron 30.0%
!!! CATCTTATGTTACTTTTAGG+TGG - chr7_3:85111805-85111824 Msa1132250:intron 30.0%
AACATAATTAACAGAGTTGG+AGG + chr7_3:85111911-85111930 None:intergenic 30.0%
TCCAACTCTGTTAATTATGT+TGG - chr7_3:85111910-85111929 Msa1132250:CDS 30.0%
TCCAACATAATTAACAGAGT+TGG + chr7_3:85111914-85111933 None:intergenic 30.0%
GAGATATTTATTCGATTCAG+TGG - chr7_3:85111932-85111951 Msa1132250:CDS 30.0%
TACTTGAGAGATACAGAAAA+TGG + chr7_3:85112165-85112184 None:intergenic 30.0%
! TCTAGAGCCAAATTAAATGT+CGG + chr7_3:85112197-85112216 None:intergenic 30.0%
!!! TTGGCTCTAGATTTTTCATT+TGG - chr7_3:85112206-85112225 Msa1132250:CDS 30.0%
CATGCTTACTTGTAATATGA+TGG - chr7_3:85112258-85112277 Msa1132250:CDS 30.0%
CTAAGTCTTGGAATCAAATA+AGG + chr7_3:85112309-85112328 None:intergenic 30.0%
CTTATTTGATTCCAAGACTT+AGG - chr7_3:85112307-85112326 Msa1132250:five_prime_UTR 30.0%
! AAATTTGAGAGTGGATTTAG+TGG + chr7_3:85110534-85110553 None:intergenic 30.0%
CTTCAACTTTATCACAAACT+CGG - chr7_3:85110589-85110608 Msa1132250:CDS 30.0%
!! AGTACTGATCAATATTCACT+TGG - chr7_3:85110674-85110693 Msa1132250:CDS 30.0%
AAAACTCAAGATGTTCAAGA+AGG - chr7_3:85110707-85110726 Msa1132250:CDS 30.0%
TATGAGAATGGTTAAAGTAG+AGG + chr7_3:85110759-85110778 None:intergenic 30.0%
TGTACGTACCTTAAAAAGAA+CGG + chr7_3:85110863-85110882 None:intergenic 30.0%
! CTCAATTTAGTTCATGAACT+TGG - chr7_3:85110885-85110904 Msa1132250:intron 30.0%
ATACCTTACGAACATATAAG+TGG + chr7_3:85110924-85110943 None:intergenic 30.0%
TAGTAATACATCTGGATCAA+GGG + chr7_3:85111066-85111085 None:intergenic 30.0%
ATAGTAATACATCTGGATCA+AGG + chr7_3:85111067-85111086 None:intergenic 30.0%
GGGAAAGGCTTATATATAAT+AGG + chr7_3:85111414-85111433 None:intergenic 30.0%
ATTATATATAAGCCTTTCCC+TGG - chr7_3:85111414-85111433 Msa1132250:intron 30.0%
AACAGTTGTAAAAGATGTAG+GGG + chr7_3:85111481-85111500 None:intergenic 30.0%
CAACAGTTGTAAAAGATGTA+GGG + chr7_3:85111482-85111501 None:intergenic 30.0%
ACAACAGTTGTAAAAGATGT+AGG + chr7_3:85111483-85111502 None:intergenic 30.0%
TTAACAATGAAGGTTTATCC+CGG - chr7_3:85111616-85111635 Msa1132250:intron 30.0%
!!! CAGCATCTTATGTTACTTTT+AGG - chr7_3:85111802-85111821 Msa1132250:intron 30.0%
!!! CATCTTATGTTACTTTTAGG+TGG - chr7_3:85111805-85111824 Msa1132250:intron 30.0%
AACATAATTAACAGAGTTGG+AGG + chr7_3:85111911-85111930 None:intergenic 30.0%
TCCAACTCTGTTAATTATGT+TGG - chr7_3:85111910-85111929 Msa1132250:CDS 30.0%
TCCAACATAATTAACAGAGT+TGG + chr7_3:85111914-85111933 None:intergenic 30.0%
GAGATATTTATTCGATTCAG+TGG - chr7_3:85111932-85111951 Msa1132250:CDS 30.0%
TACTTGAGAGATACAGAAAA+TGG + chr7_3:85112165-85112184 None:intergenic 30.0%
! TCTAGAGCCAAATTAAATGT+CGG + chr7_3:85112197-85112216 None:intergenic 30.0%
!!! TTGGCTCTAGATTTTTCATT+TGG - chr7_3:85112206-85112225 Msa1132250:CDS 30.0%
CATGCTTACTTGTAATATGA+TGG - chr7_3:85112258-85112277 Msa1132250:CDS 30.0%
CTAAGTCTTGGAATCAAATA+AGG + chr7_3:85112309-85112328 None:intergenic 30.0%
CTTATTTGATTCCAAGACTT+AGG - chr7_3:85112307-85112326 Msa1132250:five_prime_UTR 30.0%
TGATTATCCGTTTACAAGCA+TGG - chr7_3:85110466-85110485 Msa1132250:intron 35.0%
GATTATCCGTTTACAAGCAT+GGG - chr7_3:85110467-85110486 Msa1132250:intron 35.0%
ACTTTATCACAAACTCGGAT+TGG - chr7_3:85110594-85110613 Msa1132250:CDS 35.0%
ACTGATCAATATTCACTTGG+TGG - chr7_3:85110677-85110696 Msa1132250:CDS 35.0%
! ACAAACTCCCGTTCTTTTTA+AGG - chr7_3:85110852-85110871 Msa1132250:intron 35.0%
GTACGTACCTTAAAAAGAAC+GGG + chr7_3:85110862-85110881 None:intergenic 35.0%
GATCCACTTATATGTTCGTA+AGG - chr7_3:85110918-85110937 Msa1132250:CDS 35.0%
TTACAAGAAATACCCACAGA+CGG - chr7_3:85111121-85111140 Msa1132250:intron 35.0%
TGTCATAAGGCAATTGGTTA+AGG + chr7_3:85111373-85111392 None:intergenic 35.0%
CATTATATGCTATGTGTCCA+GGG + chr7_3:85111434-85111453 None:intergenic 35.0%
ACATTATATGCTATGTGTCC+AGG + chr7_3:85111435-85111454 None:intergenic 35.0%
ACAGTTGTAAAAGATGTAGG+GGG + chr7_3:85111480-85111499 None:intergenic 35.0%
!! TAATACCTTTAGAACTGCTC+TGG + chr7_3:85111780-85111799 None:intergenic 35.0%
AGGTATCAAAACTGTCTTCA+TGG - chr7_3:85112016-85112035 Msa1132250:intron 35.0%
! TGACTAGCCGACATTTAATT+TGG - chr7_3:85112187-85112206 Msa1132250:CDS 35.0%
AAGCATGTTAATGGTTGAGT+GGG + chr7_3:85112245-85112264 None:intergenic 35.0%
TAAGCATGTTAATGGTTGAG+TGG + chr7_3:85112246-85112265 None:intergenic 35.0%
TTACCTGACACTAACAGAAA+AGG + chr7_3:85112340-85112359 None:intergenic 35.0%
! TTTTCTGTTAGTGTCAGGTA+AGG - chr7_3:85112339-85112358 Msa1132250:five_prime_UTR 35.0%
TTTCTGTTAGTGTCAGGTAA+GGG - chr7_3:85112340-85112359 Msa1132250:five_prime_UTR 35.0%
TGATTATCCGTTTACAAGCA+TGG - chr7_3:85110466-85110485 Msa1132250:intron 35.0%
GATTATCCGTTTACAAGCAT+GGG - chr7_3:85110467-85110486 Msa1132250:intron 35.0%
ACTTTATCACAAACTCGGAT+TGG - chr7_3:85110594-85110613 Msa1132250:CDS 35.0%
ACTGATCAATATTCACTTGG+TGG - chr7_3:85110677-85110696 Msa1132250:CDS 35.0%
! ACAAACTCCCGTTCTTTTTA+AGG - chr7_3:85110852-85110871 Msa1132250:intron 35.0%
GTACGTACCTTAAAAAGAAC+GGG + chr7_3:85110862-85110881 None:intergenic 35.0%
GATCCACTTATATGTTCGTA+AGG - chr7_3:85110918-85110937 Msa1132250:CDS 35.0%
TTACAAGAAATACCCACAGA+CGG - chr7_3:85111121-85111140 Msa1132250:intron 35.0%
TGTCATAAGGCAATTGGTTA+AGG + chr7_3:85111373-85111392 None:intergenic 35.0%
CATTATATGCTATGTGTCCA+GGG + chr7_3:85111434-85111453 None:intergenic 35.0%
ACATTATATGCTATGTGTCC+AGG + chr7_3:85111435-85111454 None:intergenic 35.0%
ACAGTTGTAAAAGATGTAGG+GGG + chr7_3:85111480-85111499 None:intergenic 35.0%
!! TAATACCTTTAGAACTGCTC+TGG + chr7_3:85111780-85111799 None:intergenic 35.0%
AGGTATCAAAACTGTCTTCA+TGG - chr7_3:85112016-85112035 Msa1132250:intron 35.0%
! TGACTAGCCGACATTTAATT+TGG - chr7_3:85112187-85112206 Msa1132250:CDS 35.0%
AAGCATGTTAATGGTTGAGT+GGG + chr7_3:85112245-85112264 None:intergenic 35.0%
TAAGCATGTTAATGGTTGAG+TGG + chr7_3:85112246-85112265 None:intergenic 35.0%
TTACCTGACACTAACAGAAA+AGG + chr7_3:85112340-85112359 None:intergenic 35.0%
TAGTTATATCCCGTGCATTG+TGG - chr7_3:85110428-85110447 Msa1132250:CDS 40.0%
ACTCCATTATCCACAATGCA+CGG + chr7_3:85110441-85110460 None:intergenic 40.0%
!! CATTGTGGATAATGGAGTGT+GGG - chr7_3:85110443-85110462 Msa1132250:CDS 40.0%
AAGATGAAAGCAGGAAGAAG+AGG + chr7_3:85110506-85110525 None:intergenic 40.0%
! TTTGAGAGTGGATTTAGTGG+AGG + chr7_3:85110531-85110550 None:intergenic 40.0%
CATGAAACCATAGTTGCCAA+TGG + chr7_3:85110636-85110655 None:intergenic 40.0%
! GATCAATATTCACTTGGTGG+TGG - chr7_3:85110680-85110699 Msa1132250:CDS 40.0%
GTCTGTGGGTATTTCTTGTA+AGG + chr7_3:85111122-85111141 None:intergenic 40.0%
TATCATGTATGTCCGTCTGT+GGG + chr7_3:85111136-85111155 None:intergenic 40.0%
TTATCATGTATGTCCGTCTG+TGG + chr7_3:85111137-85111156 None:intergenic 40.0%
AACGAGTGTCATAAGGCAAT+TGG + chr7_3:85111379-85111398 None:intergenic 40.0%
AAGATGTAGGGGGAAATGAA+GGG + chr7_3:85111470-85111489 None:intergenic 40.0%
AAAGATGTAGGGGGAAATGA+AGG + chr7_3:85111471-85111490 None:intergenic 40.0%
TCTCACTTGAAGGAACATGT+GGG + chr7_3:85111695-85111714 None:intergenic 40.0%
ATCTCACTTGAAGGAACATG+TGG + chr7_3:85111696-85111715 None:intergenic 40.0%
! TACTTCCAGAGCAGTTCTAA+AGG - chr7_3:85111772-85111791 Msa1132250:intron 40.0%
!!! TGGCTTGCTTTTCGTGATTA+CGG - chr7_3:85111952-85111971 Msa1132250:intron 40.0%
! AACTTTTGCATAGTCTGCTG+CGG + chr7_3:85111986-85112005 None:intergenic 40.0%
!! TCATGGAATAGCTTTGAACG+AGG - chr7_3:85112033-85112052 Msa1132250:CDS 40.0%
GCCAGTCAATGAAAAGAAGA+CGG - chr7_3:85112055-85112074 Msa1132250:CDS 40.0%
! ACCGTCTTCTTTTCATTGAC+TGG + chr7_3:85112059-85112078 None:intergenic 40.0%
GATAGATTACACCAGAGTCT+TGG - chr7_3:85112138-85112157 Msa1132250:CDS 40.0%
ATGTTAATGGTTGAGTGGGA+AGG + chr7_3:85112241-85112260 None:intergenic 40.0%
TAGTTATATCCCGTGCATTG+TGG - chr7_3:85110428-85110447 Msa1132250:CDS 40.0%
ACTCCATTATCCACAATGCA+CGG + chr7_3:85110441-85110460 None:intergenic 40.0%
!! CATTGTGGATAATGGAGTGT+GGG - chr7_3:85110443-85110462 Msa1132250:CDS 40.0%
AAGATGAAAGCAGGAAGAAG+AGG + chr7_3:85110506-85110525 None:intergenic 40.0%
! TTTGAGAGTGGATTTAGTGG+AGG + chr7_3:85110531-85110550 None:intergenic 40.0%
CATGAAACCATAGTTGCCAA+TGG + chr7_3:85110636-85110655 None:intergenic 40.0%
! GATCAATATTCACTTGGTGG+TGG - chr7_3:85110680-85110699 Msa1132250:CDS 40.0%
GTCTGTGGGTATTTCTTGTA+AGG + chr7_3:85111122-85111141 None:intergenic 40.0%
TATCATGTATGTCCGTCTGT+GGG + chr7_3:85111136-85111155 None:intergenic 40.0%
TTATCATGTATGTCCGTCTG+TGG + chr7_3:85111137-85111156 None:intergenic 40.0%
AACGAGTGTCATAAGGCAAT+TGG + chr7_3:85111379-85111398 None:intergenic 40.0%
AAGATGTAGGGGGAAATGAA+GGG + chr7_3:85111470-85111489 None:intergenic 40.0%
AAAGATGTAGGGGGAAATGA+AGG + chr7_3:85111471-85111490 None:intergenic 40.0%
TCTCACTTGAAGGAACATGT+GGG + chr7_3:85111695-85111714 None:intergenic 40.0%
ATCTCACTTGAAGGAACATG+TGG + chr7_3:85111696-85111715 None:intergenic 40.0%
! TACTTCCAGAGCAGTTCTAA+AGG - chr7_3:85111772-85111791 Msa1132250:intron 40.0%
!!! TGGCTTGCTTTTCGTGATTA+CGG - chr7_3:85111952-85111971 Msa1132250:intron 40.0%
! AACTTTTGCATAGTCTGCTG+CGG + chr7_3:85111986-85112005 None:intergenic 40.0%
!! TCATGGAATAGCTTTGAACG+AGG - chr7_3:85112033-85112052 Msa1132250:CDS 40.0%
GCCAGTCAATGAAAAGAAGA+CGG - chr7_3:85112055-85112074 Msa1132250:CDS 40.0%
! ACCGTCTTCTTTTCATTGAC+TGG + chr7_3:85112059-85112078 None:intergenic 40.0%
GATAGATTACACCAGAGTCT+TGG - chr7_3:85112138-85112157 Msa1132250:CDS 40.0%
ATGTTAATGGTTGAGTGGGA+AGG + chr7_3:85112241-85112260 None:intergenic 40.0%
ATCCCGTGCATTGTGGATAA+TGG - chr7_3:85110435-85110454 Msa1132250:CDS 45.0%
CTCCATTATCCACAATGCAC+GGG + chr7_3:85110440-85110459 None:intergenic 45.0%
!! GCATTGTGGATAATGGAGTG+TGG - chr7_3:85110442-85110461 Msa1132250:CDS 45.0%
GTGGAGGTTAAGATGAAAGC+AGG + chr7_3:85110515-85110534 None:intergenic 45.0%
!! AAACTCGGATTGGTTCCAAG+TGG - chr7_3:85110604-85110623 Msa1132250:CDS 45.0%
!! AACTCGGATTGGTTCCAAGT+GGG - chr7_3:85110605-85110624 Msa1132250:CDS 45.0%
AAGAAGGCAGCGTTAAGATC+AGG - chr7_3:85110723-85110742 Msa1132250:CDS 45.0%
AGCTTGATTGATTGCAGTGC+AGG - chr7_3:85110794-85110813 Msa1132250:CDS 45.0%
! TTGCAGTGCAGGCTTTATGA+AGG - chr7_3:85110805-85110824 Msa1132250:intron 45.0%
TTATGAAGGCAGAGTTTCCC+AGG - chr7_3:85110819-85110838 Msa1132250:intron 45.0%
TATGAAGGCAGAGTTTCCCA+GGG - chr7_3:85110820-85110839 Msa1132250:intron 45.0%
AGTTTGTCTAAGTGGACCCT+GGG + chr7_3:85110839-85110858 None:intergenic 45.0%
AGAACGGGAGTTTGTCTAAG+TGG + chr7_3:85110847-85110866 None:intergenic 45.0%
TATGCTATGTGTCCAGGGAA+AGG + chr7_3:85111429-85111448 None:intergenic 45.0%
TGGGGTTGTAGCAGATATGA+TGG - chr7_3:85111651-85111670 Msa1132250:intron 45.0%
! GGTGGGTTTGAAACAACTAC+TGG - chr7_3:85111823-85111842 Msa1132250:intron 45.0%
TGAAACAACTACTGGAGAGC+AGG - chr7_3:85111831-85111850 Msa1132250:intron 45.0%
!! GGCTTGCTTTTCGTGATTAC+GGG - chr7_3:85111953-85111972 Msa1132250:intron 45.0%
TGCAAAAGTTGCGAGTGAGA+AGG - chr7_3:85111996-85112015 Msa1132250:intron 45.0%
CAGAAAATGGTCCAAGACTC+TGG + chr7_3:85112152-85112171 None:intergenic 45.0%
GATTCCAAGACTTAGGGACT+TGG - chr7_3:85112314-85112333 Msa1132250:five_prime_UTR 45.0%
! TGGCCTTTTCTGTTAGTGTC+AGG - chr7_3:85112334-85112353 Msa1132250:five_prime_UTR 45.0%
ATCCCGTGCATTGTGGATAA+TGG - chr7_3:85110435-85110454 Msa1132250:CDS 45.0%
CTCCATTATCCACAATGCAC+GGG + chr7_3:85110440-85110459 None:intergenic 45.0%
!! GCATTGTGGATAATGGAGTG+TGG - chr7_3:85110442-85110461 Msa1132250:CDS 45.0%
GTGGAGGTTAAGATGAAAGC+AGG + chr7_3:85110515-85110534 None:intergenic 45.0%
!! AAACTCGGATTGGTTCCAAG+TGG - chr7_3:85110604-85110623 Msa1132250:CDS 45.0%
!! AACTCGGATTGGTTCCAAGT+GGG - chr7_3:85110605-85110624 Msa1132250:CDS 45.0%
AAGAAGGCAGCGTTAAGATC+AGG - chr7_3:85110723-85110742 Msa1132250:CDS 45.0%
AGCTTGATTGATTGCAGTGC+AGG - chr7_3:85110794-85110813 Msa1132250:CDS 45.0%
! TTGCAGTGCAGGCTTTATGA+AGG - chr7_3:85110805-85110824 Msa1132250:intron 45.0%
TTATGAAGGCAGAGTTTCCC+AGG - chr7_3:85110819-85110838 Msa1132250:intron 45.0%
TATGAAGGCAGAGTTTCCCA+GGG - chr7_3:85110820-85110839 Msa1132250:intron 45.0%
AGTTTGTCTAAGTGGACCCT+GGG + chr7_3:85110839-85110858 None:intergenic 45.0%
AGAACGGGAGTTTGTCTAAG+TGG + chr7_3:85110847-85110866 None:intergenic 45.0%
TATGCTATGTGTCCAGGGAA+AGG + chr7_3:85111429-85111448 None:intergenic 45.0%
TGGGGTTGTAGCAGATATGA+TGG - chr7_3:85111651-85111670 Msa1132250:intron 45.0%
! GGTGGGTTTGAAACAACTAC+TGG - chr7_3:85111823-85111842 Msa1132250:intron 45.0%
TGAAACAACTACTGGAGAGC+AGG - chr7_3:85111831-85111850 Msa1132250:intron 45.0%
!! GGCTTGCTTTTCGTGATTAC+GGG - chr7_3:85111953-85111972 Msa1132250:intron 45.0%
TGCAAAAGTTGCGAGTGAGA+AGG - chr7_3:85111996-85112015 Msa1132250:intron 45.0%
CAGAAAATGGTCCAAGACTC+TGG + chr7_3:85112152-85112171 None:intergenic 45.0%
GATTCCAAGACTTAGGGACT+TGG - chr7_3:85112314-85112333 Msa1132250:five_prime_UTR 45.0%
! TGGCCTTTTCTGTTAGTGTC+AGG - chr7_3:85112334-85112353 Msa1132250:five_prime_UTR 45.0%
GCAACGCCCATGCTTGTAAA+CGG + chr7_3:85110476-85110495 None:intergenic 50.0%
GAGTTTGTCTAAGTGGACCC+TGG + chr7_3:85110840-85110859 None:intergenic 50.0%
GCCTTATGACACTCGTTCGT+TGG - chr7_3:85111382-85111401 Msa1132250:intron 50.0%
GCCAACGAACGAGTGTCATA+AGG + chr7_3:85111386-85111405 None:intergenic 50.0%
! CTTCTTCAGGGTGCTTTGAG+AGG - chr7_3:85112093-85112112 Msa1132250:CDS 50.0%
!! TCAGGGTGCTTTGAGAGGTT+TGG - chr7_3:85112098-85112117 Msa1132250:CDS 50.0%
AAGGCCAAGTCCCTAAGTCT+TGG + chr7_3:85112321-85112340 None:intergenic 50.0%
GCAACGCCCATGCTTGTAAA+CGG + chr7_3:85110476-85110495 None:intergenic 50.0%
GAGTTTGTCTAAGTGGACCC+TGG + chr7_3:85110840-85110859 None:intergenic 50.0%
GCCTTATGACACTCGTTCGT+TGG - chr7_3:85111382-85111401 Msa1132250:intron 50.0%
GCCAACGAACGAGTGTCATA+AGG + chr7_3:85111386-85111405 None:intergenic 50.0%
! CTTCTTCAGGGTGCTTTGAG+AGG - chr7_3:85112093-85112112 Msa1132250:CDS 50.0%
!! TCAGGGTGCTTTGAGAGGTT+TGG - chr7_3:85112098-85112117 Msa1132250:CDS 50.0%
AAGGCCAAGTCCCTAAGTCT+TGG + chr7_3:85112321-85112340 None:intergenic 50.0%
TTCCAAGTGGGTCGAGCCAT+TGG - chr7_3:85110617-85110636 Msa1132250:CDS 55.0%
GGTCGAGCCATTGGCAACTA+TGG - chr7_3:85110626-85110645 Msa1132250:CDS 55.0%
GTTTATCCCGGAACACGAGC+TGG - chr7_3:85111628-85111647 Msa1132250:intron 55.0%
TTCCAAGTGGGTCGAGCCAT+TGG - chr7_3:85110617-85110636 Msa1132250:CDS 55.0%
GGTCGAGCCATTGGCAACTA+TGG - chr7_3:85110626-85110645 Msa1132250:CDS 55.0%
GTTTATCCCGGAACACGAGC+TGG - chr7_3:85111628-85111647 Msa1132250:intron 55.0%
TGCCAATGGCTCGACCCACT+TGG + chr7_3:85110622-85110641 None:intergenic 60.0%
TATCCCGGAACACGAGCTGG+TGG - chr7_3:85111631-85111650 Msa1132250:intron 60.0%
ATCCCGGAACACGAGCTGGT+GGG - chr7_3:85111632-85111651 Msa1132250:intron 60.0%
AACCCCACCAGCTCGTGTTC+CGG + chr7_3:85111638-85111657 None:intergenic 60.0%
TGCCAATGGCTCGACCCACT+TGG + chr7_3:85110622-85110641 None:intergenic 60.0%
TATCCCGGAACACGAGCTGG+TGG - chr7_3:85111631-85111650 Msa1132250:intron 60.0%
ATCCCGGAACACGAGCTGGT+GGG - chr7_3:85111632-85111651 Msa1132250:intron 60.0%
AACCCCACCAGCTCGTGTTC+CGG + chr7_3:85111638-85111657 None:intergenic 60.0%
TCCCGGAACACGAGCTGGTG+GGG - chr7_3:85111633-85111652 Msa1132250:intron 65.0%
ACCCCACCAGCTCGTGTTCC+GGG + chr7_3:85111637-85111656 None:intergenic 65.0%
TCCCGGAACACGAGCTGGTG+GGG - chr7_3:85111633-85111652 Msa1132250:intron 65.0%
ACCCCACCAGCTCGTGTTCC+GGG + chr7_3:85111637-85111656 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 85110408 85112359 85110408 ID=Msa1132250;Name=Msa1132250
chr7_3 mRNA 85110408 85112359 85110408 ID=Msa1132250-mRNA-1;Parent=Msa1132250;Name=Msa1132250-mRNA-1;_AED=0.13;_eAED=0.13;_QI=77|1|0.83|1|1|1|6|0|258
chr7_3 exon 85110408 85110483 85110408 ID=Msa1132250-mRNA-1:exon:25403;Parent=Msa1132250-mRNA-1
chr7_3 exon 85110586 85110815 85110586 ID=Msa1132250-mRNA-1:exon:25402;Parent=Msa1132250-mRNA-1
chr7_3 exon 85110915 85110986 85110915 ID=Msa1132250-mRNA-1:exon:25401;Parent=Msa1132250-mRNA-1
chr7_3 exon 85111059 85111139 85111059 ID=Msa1132250-mRNA-1:exon:25400;Parent=Msa1132250-mRNA-1
chr7_3 exon 85111894 85111951 85111894 ID=Msa1132250-mRNA-1:exon:25399;Parent=Msa1132250-mRNA-1
chr7_3 exon 85112023 85112359 85112023 ID=Msa1132250-mRNA-1:exon:25398;Parent=Msa1132250-mRNA-1
chr7_3 five_prime_UTR 85112283 85112359 85112283 ID=Msa1132250-mRNA-1:five_prime_utr;Parent=Msa1132250-mRNA-1
chr7_3 CDS 85112023 85112282 85112023 ID=Msa1132250-mRNA-1:cds;Parent=Msa1132250-mRNA-1
chr7_3 CDS 85111894 85111951 85111894 ID=Msa1132250-mRNA-1:cds;Parent=Msa1132250-mRNA-1
chr7_3 CDS 85111059 85111139 85111059 ID=Msa1132250-mRNA-1:cds;Parent=Msa1132250-mRNA-1
chr7_3 CDS 85110915 85110986 85110915 ID=Msa1132250-mRNA-1:cds;Parent=Msa1132250-mRNA-1
chr7_3 CDS 85110586 85110815 85110586 ID=Msa1132250-mRNA-1:cds;Parent=Msa1132250-mRNA-1
chr7_3 CDS 85110408 85110483 85110408 ID=Msa1132250-mRNA-1:cds;Parent=Msa1132250-mRNA-1
Gene Sequence

>Msa1132250

ATGGGCGTTGCTGCTTTTCCTCTTCTTCCTGCTTTCATCTTAACCTCCACTAAATCCACTCTCAAATTTCAAGTAAAAGCTAATTATAATGATAATAGTAATGGCTTCAACTTTATCACAAACTCGGATTGGTTCCAAGTGGGTCGAGCCATTGGCAACTATGGTTTCATGAACGTTACTACTACTTCTAGTACTGATCAATATTCACTTGGTGGTGGATTGAAAACTCAAGATGTTCAAGAAGGCAGCGTTAAGATCAGGCTTTATGAAGGCAGAGTTTCCCAGGGTCCACTTAGACAAACTCCCGTTCTTTTTAAGGTTTATCCCGGAACACGAGCTGGTGGGGTTGTAGCAGATATGATGGCTGCAAACGAGTTGAATTCCCACATGTTCCTTCAAAGCAGTTCTAAAGGTATTAGTCAGCATCTTATGTTACTTTTAGGTGGGTTTGAAACAACTACTGGAGAGCAGTGGCTTGCTTTTCGTGATTACGGGAAATCTACCGCAGCAGACTATGCAAAAGTTGCGAGTGAGAAGGTATCAAAACTGTCTTCATGGAATAGCTTTGAACGAGGCCAGTCAATGAAAAGAAGACGGTGTTTCATTATAAAGCTTCTTCAGGGTGCTTTGAGAGGTTTGGCTTACATGCACGATCATGATAGATTACACCAGAGTCTTGGACCATTTTCTGTATCTCTCAACACAATATCTGAAAGTGAAGCTCCTTATTTGATTCCAAGACTTAGGGACTTGGCCTTTTCTGTTAGTGTCAGGTAA

Protein sequence

>Msa1132250

MGVAAFPLLPAFILTSTKSTLKFQVKANYNDNSNGFNFITNSDWFQVGRAIGNYGFMNVTTTSSTDQYSLGGGLKTQDVQEGSVKIRLYEGRVSQGPLRQTPVLFKVYPGTRAGGVVADMMAANELNSHMFLQSSSKGISQHLMLLLGGFETTTGEQWLAFRDYGKSTAADYAKVASEKVSKLSSWNSFERGQSMKRRRCFIIKLLQGALRGLAYMHDHDRLHQSLGPFSVSLNTISESEAPYLIPRLRDLAFSVSVR*