AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0792490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0792490 MtrunA17_Chr7g0260701 94.853 136 7 0 1 136 1 136 5.77e-83 239
Msa0792490 MtrunA17_Chr1g0184761 73.984 123 31 1 15 136 15 137 2.76e-52 162
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0792490 AT2G30570.1 57.664 137 53 3 1 136 1 133 2.36e-43 139

Find 69 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGATGAGGATGAAGATTC+TGG 0.217541 5_3:-3745968 Msa0792490:CDS
TGGATCTTGTTTGGTGTCTT+TGG 0.223893 5_3:-3746028 Msa0792490:CDS
AGCAGATTCTTTCTTTGTTA+TGG 0.226925 5_3:-3745812 Msa0792490:three_prime_UTR
TTCTAAGGTGCATATCCTTC+TGG 0.231560 5_3:+3745928 None:intergenic
TTGGTGTCTTTGGTCTTATA+TGG 0.276875 5_3:-3746018 Msa0792490:CDS
GAATCTACATTCAAGGAAAA+TGG 0.279162 5_3:-3746453 Msa0792490:exon
CTTCTTGGTTGGATCTTGTT+TGG 0.292250 5_3:-3746037 Msa0792490:CDS
GGACTTAGCAACAATCTTCT+TGG 0.299425 5_3:-3746052 Msa0792490:CDS
CTTCCAACCTTAGCTATTGA+TGG 0.334379 5_3:+3746241 None:intergenic
CAAATCAATTTGTGGGTTCA+TGG 0.342909 5_3:-3745771 Msa0792490:three_prime_UTR
GACCTGCTTCCTTGCACATC+AGG 0.343789 5_3:+3746193 None:intergenic
ATTTGCTTAATTCAGACAAA+TGG 0.346148 5_3:+3746503 None:intergenic
TAGATTCAGGTATGAGAGTA+TGG 0.356495 5_3:+3746469 None:intergenic
GAAGGAACTGGCCTTCCCTT+TGG 0.386325 5_3:-3746073 Msa0792490:CDS
TCTAAGGTGCATATCCTTCT+GGG 0.390166 5_3:+3745929 None:intergenic
ACTGAACTGTGCAATTTCTA+AGG 0.404366 5_3:+3745913 None:intergenic
GATGTATCAAATCAATTTGT+GGG 0.406541 5_3:-3745778 Msa0792490:three_prime_UTR
TCTACCAAAGCCATGGCTGC+TGG 0.411412 5_3:+3746112 None:intergenic
TGTTGAGGTGCCAGCAATAA+TGG 0.413871 5_3:+3746427 None:intergenic
AAAACTTACCAACAATGGTC+TGG 0.428853 5_3:+3746351 None:intergenic
CATACCTGAATCTACATTCA+AGG 0.434806 5_3:-3746460 Msa0792490:five_prime_UTR
TTTGCTTAATTCAGACAAAT+GGG 0.434827 5_3:+3746504 None:intergenic
TAGACTGAATAATTGAAATC+AGG 0.442923 5_3:+3745667 None:intergenic
AAAATGGCAACCATTATTGC+TGG 0.451832 5_3:-3746437 Msa0792490:CDS
AAGCCCAGCAGCCATGGCTT+TGG 0.453307 5_3:-3746116 Msa0792490:CDS
TAATATTAGTTTATTAGCAT+TGG 0.456037 5_3:+3746538 None:intergenic
TGATGTATCAAATCAATTTG+TGG 0.461243 5_3:-3745779 Msa0792490:three_prime_UTR
TTAGCAACAATCTTCTTGGT+TGG 0.463955 5_3:-3746048 Msa0792490:CDS
TTTGTGCACAAGCAACCTCT+TGG 0.465311 5_3:-3746383 Msa0792490:CDS
AGAATGAGCACTGAAGGAAC+TGG 0.491605 5_3:-3746085 Msa0792490:CDS
CTACCAAAGCCATGGCTGCT+GGG 0.492560 5_3:+3746113 None:intergenic
AGCAGAGATAGCTGCTATCA+AGG 0.498626 5_3:+3746150 None:intergenic
TTGATGAGGATGAAGATTCT+GGG 0.502222 5_3:-3745967 Msa0792490:CDS
AGCAGGTCAAACATAGGAAT+GGG 0.505396 5_3:-3746178 Msa0792490:CDS
AAATCAATTTGTGGGTTCAT+GGG 0.506046 5_3:-3745770 Msa0792490:three_prime_UTR
CAGAATCTTCATCCTCATCA+AGG 0.515447 5_3:+3745969 None:intergenic
GTCCCATCCCAGACCATTGT+TGG 0.518566 5_3:-3746359 Msa0792490:intron
AACCTGATGTGCAAGGAAGC+AGG 0.522854 5_3:-3746195 Msa0792490:CDS
CTTGTCAAGCCCAGCAGCCA+TGG 0.525662 5_3:-3746122 Msa0792490:CDS
CTAAGGTGCATATCCTTCTG+GGG 0.530728 5_3:+3745930 None:intergenic
AGAGTGAGATGTTCCATTGA+GGG 0.532339 5_3:-3746220 Msa0792490:CDS
AAACTTACCAACAATGGTCT+GGG 0.543127 5_3:+3746352 None:intergenic
AAGCAGGTCAAACATAGGAA+TGG 0.548495 5_3:-3746179 Msa0792490:CDS
AAGATTGTTGCTAAGTCCAA+AGG 0.554462 5_3:+3746057 None:intergenic
CTACGCTTCCTCCCTTGATG+AGG 0.562437 5_3:-3745981 Msa0792490:CDS
TACCAACAATGGTCTGGGAT+GGG 0.563076 5_3:+3746357 None:intergenic
TTGCCATCAATAGCTAAGGT+TGG 0.567060 5_3:-3746244 Msa0792490:CDS
AGATTGTTGCTAAGTCCAAA+GGG 0.569327 5_3:+3746058 None:intergenic
TTACCAACAATGGTCTGGGA+TGG 0.569922 5_3:+3746356 None:intergenic
ACATCTTCAATCATCCGCAC+AGG 0.569929 5_3:-3746407 Msa0792490:CDS
GATGAGAGAATGAGCACTGA+AGG 0.576075 5_3:-3746091 Msa0792490:CDS
CATGGCTGCTGGGCTTGACA+AGG 0.577276 5_3:+3746123 None:intergenic
AGGATTGCCATCAATAGCTA+AGG 0.584181 5_3:-3746248 Msa0792490:CDS
AAGAGTGAGATGTTCCATTG+AGG 0.585764 5_3:-3746221 Msa0792490:CDS
CAAGGAAGCAGGTCAAACAT+AGG 0.586835 5_3:-3746184 Msa0792490:CDS
ATCCACGCTGTGTGGTGCAT+AGG 0.592101 5_3:-3746572 Msa0792490:five_prime_UTR
TGTCTCTATAAAACCCCAGA+AGG 0.597060 5_3:-3745943 Msa0792490:exon
AGAATCTTCATCCTCATCAA+GGG 0.614208 5_3:+3745970 None:intergenic
TTCATTCTATCCACGCTGTG+TGG 0.619096 5_3:-3746580 Msa0792490:five_prime_UTR
GAGGGAAAACCTGATGTGCA+AGG 0.626356 5_3:-3746202 Msa0792490:CDS
TCTCTCATCTACCAAAGCCA+TGG 0.628797 5_3:+3746105 None:intergenic
ATCTTCATCCTCATCAAGGG+AGG 0.635880 5_3:+3745973 None:intergenic
TCAGGTATGAGAGTATGGAT+AGG 0.637744 5_3:+3746474 None:intergenic
TGTTGCTAAGTCCAAAGGGA+AGG 0.637762 5_3:+3746062 None:intergenic
GCGGATGATTGAAGATGTTG+AGG 0.660911 5_3:+3746412 None:intergenic
GTCTGGGATGGGACTCCAAG+AGG 0.664580 5_3:+3746368 None:intergenic
AACCTATGCACCACACAGCG+TGG 0.667435 5_3:+3746570 None:intergenic
GAATTTAGAATAAATACACA+AGG 0.671814 5_3:+3745863 None:intergenic
GCTTGTGCACAAAACCTGTG+CGG 0.820156 5_3:+3746393 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATGTTTTTTTTATAACT+TGG + chr5_3:3746545-3746564 None:intergenic 10.0%
!!! ATTATGTTTTTTTTATAACT+TGG + chr5_3:3746545-3746564 None:intergenic 10.0%
!!! TAATATTAGTTTATTAGCAT+TGG + chr5_3:3745721-3745740 None:intergenic 15.0%
!!! GTTTTTTAATACAACAAAAA+AGG + chr5_3:3746369-3746388 None:intergenic 15.0%
!!! TAATATTAGTTTATTAGCAT+TGG + chr5_3:3745721-3745740 None:intergenic 15.0%
!!! GTTTTTTAATACAACAAAAA+AGG + chr5_3:3746369-3746388 None:intergenic 15.0%
!! CTTTCAAACATAAATTGTAT+AGG - chr5_3:3745988-3746007 Msa0792490:CDS 20.0%
!!! GAATTTAGAATAAATACACA+AGG + chr5_3:3746396-3746415 None:intergenic 20.0%
!!! AAATTCTAATTTCTCTTTTC+TGG - chr5_3:3746410-3746429 Msa0792490:CDS 20.0%
!!! GTTTTTTTTATAACTTGGAT+TGG + chr5_3:3746540-3746559 None:intergenic 20.0%
!! CTTTCAAACATAAATTGTAT+AGG - chr5_3:3745988-3746007 Msa0792490:CDS 20.0%
!!! GAATTTAGAATAAATACACA+AGG + chr5_3:3746396-3746415 None:intergenic 20.0%
!!! AAATTCTAATTTCTCTTTTC+TGG - chr5_3:3746410-3746429 Msa0792490:CDS 20.0%
!!! GTTTTTTTTATAACTTGGAT+TGG + chr5_3:3746540-3746559 None:intergenic 20.0%
! TTTGCTTAATTCAGACAAAT+GGG + chr5_3:3745755-3745774 None:intergenic 25.0%
! ATTTGCTTAATTCAGACAAA+TGG + chr5_3:3745756-3745775 None:intergenic 25.0%
! TTTGATGAAGATGAAATTGT+TGG + chr5_3:3745945-3745964 None:intergenic 25.0%
! TGATGTATCAAATCAATTTG+TGG - chr5_3:3746477-3746496 Msa0792490:five_prime_UTR 25.0%
! GATGTATCAAATCAATTTGT+GGG - chr5_3:3746478-3746497 Msa0792490:five_prime_UTR 25.0%
! TTTGCTTAATTCAGACAAAT+GGG + chr5_3:3745755-3745774 None:intergenic 25.0%
! ATTTGCTTAATTCAGACAAA+TGG + chr5_3:3745756-3745775 None:intergenic 25.0%
! TTTGATGAAGATGAAATTGT+TGG + chr5_3:3745945-3745964 None:intergenic 25.0%
! TGATGTATCAAATCAATTTG+TGG - chr5_3:3746477-3746496 Msa0792490:five_prime_UTR 25.0%
! GATGTATCAAATCAATTTGT+GGG - chr5_3:3746478-3746497 Msa0792490:five_prime_UTR 25.0%
! TTTTCCTTGAATGTAGATTC+AGG + chr5_3:3745803-3745822 None:intergenic 30.0%
GAATCTACATTCAAGGAAAA+TGG - chr5_3:3745803-3745822 Msa0792490:three_prime_UTR 30.0%
TAGGAAAAACTTACCAACAA+TGG + chr5_3:3745913-3745932 None:intergenic 30.0%
! AAATTGTTGGTTGATTCACT+AGG + chr5_3:3745932-3745951 None:intergenic 30.0%
AGCAGATTCTTTCTTTGTTA+TGG - chr5_3:3746444-3746463 Msa0792490:exon 30.0%
AAATCAATTTGTGGGTTCAT+GGG - chr5_3:3746486-3746505 Msa0792490:five_prime_UTR 30.0%
! TTTTCCTTGAATGTAGATTC+AGG + chr5_3:3745803-3745822 None:intergenic 30.0%
GAATCTACATTCAAGGAAAA+TGG - chr5_3:3745803-3745822 Msa0792490:three_prime_UTR 30.0%
TAGGAAAAACTTACCAACAA+TGG + chr5_3:3745913-3745932 None:intergenic 30.0%
! AAATTGTTGGTTGATTCACT+AGG + chr5_3:3745932-3745951 None:intergenic 30.0%
AGCAGATTCTTTCTTTGTTA+TGG - chr5_3:3746444-3746463 Msa0792490:exon 30.0%
AAATCAATTTGTGGGTTCAT+GGG - chr5_3:3746486-3746505 Msa0792490:five_prime_UTR 30.0%
TAGATTCAGGTATGAGAGTA+TGG + chr5_3:3745790-3745809 None:intergenic 35.0%
CATACCTGAATCTACATTCA+AGG - chr5_3:3745796-3745815 Msa0792490:three_prime_UTR 35.0%
AAAATGGCAACCATTATTGC+TGG - chr5_3:3745819-3745838 Msa0792490:three_prime_UTR 35.0%
AAACTTACCAACAATGGTCT+GGG + chr5_3:3745907-3745926 None:intergenic 35.0%
AAAACTTACCAACAATGGTC+TGG + chr5_3:3745908-3745927 None:intergenic 35.0%
AGATTGTTGCTAAGTCCAAA+GGG + chr5_3:3746201-3746220 None:intergenic 35.0%
AAGATTGTTGCTAAGTCCAA+AGG + chr5_3:3746202-3746221 None:intergenic 35.0%
TTAGCAACAATCTTCTTGGT+TGG - chr5_3:3746208-3746227 Msa0792490:CDS 35.0%
!! TTGGTGTCTTTGGTCTTATA+TGG - chr5_3:3746238-3746257 Msa0792490:CDS 35.0%
AGAATCTTCATCCTCATCAA+GGG + chr5_3:3746289-3746308 None:intergenic 35.0%
TTGATGAGGATGAAGATTCT+GGG - chr5_3:3746289-3746308 Msa0792490:intron 35.0%
ACTGAACTGTGCAATTTCTA+AGG + chr5_3:3746346-3746365 None:intergenic 35.0%
CAAATCAATTTGTGGGTTCA+TGG - chr5_3:3746485-3746504 Msa0792490:five_prime_UTR 35.0%
TAGATTCAGGTATGAGAGTA+TGG + chr5_3:3745790-3745809 None:intergenic 35.0%
CATACCTGAATCTACATTCA+AGG - chr5_3:3745796-3745815 Msa0792490:three_prime_UTR 35.0%
AAAATGGCAACCATTATTGC+TGG - chr5_3:3745819-3745838 Msa0792490:three_prime_UTR 35.0%
AAACTTACCAACAATGGTCT+GGG + chr5_3:3745907-3745926 None:intergenic 35.0%
AAAACTTACCAACAATGGTC+TGG + chr5_3:3745908-3745927 None:intergenic 35.0%
AGATTGTTGCTAAGTCCAAA+GGG + chr5_3:3746201-3746220 None:intergenic 35.0%
AAGATTGTTGCTAAGTCCAA+AGG + chr5_3:3746202-3746221 None:intergenic 35.0%
TTAGCAACAATCTTCTTGGT+TGG - chr5_3:3746208-3746227 Msa0792490:CDS 35.0%
!! TTGGTGTCTTTGGTCTTATA+TGG - chr5_3:3746238-3746257 Msa0792490:CDS 35.0%
AGAATCTTCATCCTCATCAA+GGG + chr5_3:3746289-3746308 None:intergenic 35.0%
TTGATGAGGATGAAGATTCT+GGG - chr5_3:3746289-3746308 Msa0792490:intron 35.0%
ACTGAACTGTGCAATTTCTA+AGG + chr5_3:3746346-3746365 None:intergenic 35.0%
CAAATCAATTTGTGGGTTCA+TGG - chr5_3:3746485-3746504 Msa0792490:five_prime_UTR 35.0%
! TCAGGTATGAGAGTATGGAT+AGG + chr5_3:3745785-3745804 None:intergenic 40.0%
AGGATTGCCATCAATAGCTA+AGG - chr5_3:3746008-3746027 Msa0792490:CDS 40.0%
TTGCCATCAATAGCTAAGGT+TGG - chr5_3:3746012-3746031 Msa0792490:CDS 40.0%
CTTCCAACCTTAGCTATTGA+TGG + chr5_3:3746018-3746037 None:intergenic 40.0%
AAGAGTGAGATGTTCCATTG+AGG - chr5_3:3746035-3746054 Msa0792490:CDS 40.0%
AGAGTGAGATGTTCCATTGA+GGG - chr5_3:3746036-3746055 Msa0792490:CDS 40.0%
AAGCAGGTCAAACATAGGAA+TGG - chr5_3:3746077-3746096 Msa0792490:CDS 40.0%
AGCAGGTCAAACATAGGAAT+GGG - chr5_3:3746078-3746097 Msa0792490:CDS 40.0%
GGACTTAGCAACAATCTTCT+TGG - chr5_3:3746204-3746223 Msa0792490:CDS 40.0%
CTTCTTGGTTGGATCTTGTT+TGG - chr5_3:3746219-3746238 Msa0792490:CDS 40.0%
!! TGGATCTTGTTTGGTGTCTT+TGG - chr5_3:3746228-3746247 Msa0792490:CDS 40.0%
CAGAATCTTCATCCTCATCA+AGG + chr5_3:3746290-3746309 None:intergenic 40.0%
CTTGATGAGGATGAAGATTC+TGG - chr5_3:3746288-3746307 Msa0792490:intron 40.0%
TGTCTCTATAAAACCCCAGA+AGG - chr5_3:3746313-3746332 Msa0792490:intron 40.0%
! TCTAAGGTGCATATCCTTCT+GGG + chr5_3:3746330-3746349 None:intergenic 40.0%
!! TTCTAAGGTGCATATCCTTC+TGG + chr5_3:3746331-3746350 None:intergenic 40.0%
! TCAGGTATGAGAGTATGGAT+AGG + chr5_3:3745785-3745804 None:intergenic 40.0%
AGGATTGCCATCAATAGCTA+AGG - chr5_3:3746008-3746027 Msa0792490:CDS 40.0%
TTGCCATCAATAGCTAAGGT+TGG - chr5_3:3746012-3746031 Msa0792490:CDS 40.0%
CTTCCAACCTTAGCTATTGA+TGG + chr5_3:3746018-3746037 None:intergenic 40.0%
AAGAGTGAGATGTTCCATTG+AGG - chr5_3:3746035-3746054 Msa0792490:CDS 40.0%
AGAGTGAGATGTTCCATTGA+GGG - chr5_3:3746036-3746055 Msa0792490:CDS 40.0%
AAGCAGGTCAAACATAGGAA+TGG - chr5_3:3746077-3746096 Msa0792490:CDS 40.0%
AGCAGGTCAAACATAGGAAT+GGG - chr5_3:3746078-3746097 Msa0792490:CDS 40.0%
GGACTTAGCAACAATCTTCT+TGG - chr5_3:3746204-3746223 Msa0792490:CDS 40.0%
CTTCTTGGTTGGATCTTGTT+TGG - chr5_3:3746219-3746238 Msa0792490:CDS 40.0%
!! TGGATCTTGTTTGGTGTCTT+TGG - chr5_3:3746228-3746247 Msa0792490:CDS 40.0%
CAGAATCTTCATCCTCATCA+AGG + chr5_3:3746290-3746309 None:intergenic 40.0%
CTTGATGAGGATGAAGATTC+TGG - chr5_3:3746288-3746307 Msa0792490:intron 40.0%
TGTCTCTATAAAACCCCAGA+AGG - chr5_3:3746313-3746332 Msa0792490:intron 40.0%
! TCTAAGGTGCATATCCTTCT+GGG + chr5_3:3746330-3746349 None:intergenic 40.0%
!! TTCTAAGGTGCATATCCTTC+TGG + chr5_3:3746331-3746350 None:intergenic 40.0%
! TGTTGAGGTGCCAGCAATAA+TGG + chr5_3:3745832-3745851 None:intergenic 45.0%
GCGGATGATTGAAGATGTTG+AGG + chr5_3:3745847-3745866 None:intergenic 45.0%
ACATCTTCAATCATCCGCAC+AGG - chr5_3:3745849-3745868 Msa0792490:three_prime_UTR 45.0%
TTTGTGCACAAGCAACCTCT+TGG - chr5_3:3745873-3745892 Msa0792490:three_prime_UTR 45.0%
! TACCAACAATGGTCTGGGAT+GGG + chr5_3:3745902-3745921 None:intergenic 45.0%
TTACCAACAATGGTCTGGGA+TGG + chr5_3:3745903-3745922 None:intergenic 45.0%
! CACATCAGGTTTTCCCTCAA+TGG + chr5_3:3746052-3746071 None:intergenic 45.0%
CAAGGAAGCAGGTCAAACAT+AGG - chr5_3:3746072-3746091 Msa0792490:CDS 45.0%
AGCAGAGATAGCTGCTATCA+AGG + chr5_3:3746109-3746128 None:intergenic 45.0%
TCTCTCATCTACCAAAGCCA+TGG + chr5_3:3746154-3746173 None:intergenic 45.0%
!! GATGAGAGAATGAGCACTGA+AGG - chr5_3:3746165-3746184 Msa0792490:CDS 45.0%
!! AGAATGAGCACTGAAGGAAC+TGG - chr5_3:3746171-3746190 Msa0792490:CDS 45.0%
TGTTGCTAAGTCCAAAGGGA+AGG + chr5_3:3746197-3746216 None:intergenic 45.0%
ATCTTCATCCTCATCAAGGG+AGG + chr5_3:3746286-3746305 None:intergenic 45.0%
CTAAGGTGCATATCCTTCTG+GGG + chr5_3:3746329-3746348 None:intergenic 45.0%
! TGTTGAGGTGCCAGCAATAA+TGG + chr5_3:3745832-3745851 None:intergenic 45.0%
GCGGATGATTGAAGATGTTG+AGG + chr5_3:3745847-3745866 None:intergenic 45.0%
ACATCTTCAATCATCCGCAC+AGG - chr5_3:3745849-3745868 Msa0792490:three_prime_UTR 45.0%
TTTGTGCACAAGCAACCTCT+TGG - chr5_3:3745873-3745892 Msa0792490:three_prime_UTR 45.0%
! TACCAACAATGGTCTGGGAT+GGG + chr5_3:3745902-3745921 None:intergenic 45.0%
TTACCAACAATGGTCTGGGA+TGG + chr5_3:3745903-3745922 None:intergenic 45.0%
! CACATCAGGTTTTCCCTCAA+TGG + chr5_3:3746052-3746071 None:intergenic 45.0%
CAAGGAAGCAGGTCAAACAT+AGG - chr5_3:3746072-3746091 Msa0792490:CDS 45.0%
AGCAGAGATAGCTGCTATCA+AGG + chr5_3:3746109-3746128 None:intergenic 45.0%
TCTCTCATCTACCAAAGCCA+TGG + chr5_3:3746154-3746173 None:intergenic 45.0%
!! GATGAGAGAATGAGCACTGA+AGG - chr5_3:3746165-3746184 Msa0792490:CDS 45.0%
!! AGAATGAGCACTGAAGGAAC+TGG - chr5_3:3746171-3746190 Msa0792490:CDS 45.0%
TGTTGCTAAGTCCAAAGGGA+AGG + chr5_3:3746197-3746216 None:intergenic 45.0%
ATCTTCATCCTCATCAAGGG+AGG + chr5_3:3746286-3746305 None:intergenic 45.0%
CTAAGGTGCATATCCTTCTG+GGG + chr5_3:3746329-3746348 None:intergenic 45.0%
GCTTGTGCACAAAACCTGTG+CGG + chr5_3:3745866-3745885 None:intergenic 50.0%
GAGGGAAAACCTGATGTGCA+AGG - chr5_3:3746054-3746073 Msa0792490:CDS 50.0%
AACCTGATGTGCAAGGAAGC+AGG - chr5_3:3746061-3746080 Msa0792490:CDS 50.0%
GCTTGTGCACAAAACCTGTG+CGG + chr5_3:3745866-3745885 None:intergenic 50.0%
GAGGGAAAACCTGATGTGCA+AGG - chr5_3:3746054-3746073 Msa0792490:CDS 50.0%
AACCTGATGTGCAAGGAAGC+AGG - chr5_3:3746061-3746080 Msa0792490:CDS 50.0%
ATCCACGCTGTGTGGTGCAT+AGG - chr5_3:3745684-3745703 Msa0792490:three_prime_UTR 55.0%
AACCTATGCACCACACAGCG+TGG + chr5_3:3745689-3745708 None:intergenic 55.0%
GTCCCATCCCAGACCATTGT+TGG - chr5_3:3745897-3745916 Msa0792490:three_prime_UTR 55.0%
GACCTGCTTCCTTGCACATC+AGG + chr5_3:3746066-3746085 None:intergenic 55.0%
CTACCAAAGCCATGGCTGCT+GGG + chr5_3:3746146-3746165 None:intergenic 55.0%
TCTACCAAAGCCATGGCTGC+TGG + chr5_3:3746147-3746166 None:intergenic 55.0%
!! GAAGGAACTGGCCTTCCCTT+TGG - chr5_3:3746183-3746202 Msa0792490:CDS 55.0%
CTACGCTTCCTCCCTTGATG+AGG - chr5_3:3746275-3746294 Msa0792490:intron 55.0%
ATCCACGCTGTGTGGTGCAT+AGG - chr5_3:3745684-3745703 Msa0792490:three_prime_UTR 55.0%
AACCTATGCACCACACAGCG+TGG + chr5_3:3745689-3745708 None:intergenic 55.0%
GTCCCATCCCAGACCATTGT+TGG - chr5_3:3745897-3745916 Msa0792490:three_prime_UTR 55.0%
GACCTGCTTCCTTGCACATC+AGG + chr5_3:3746066-3746085 None:intergenic 55.0%
CTACCAAAGCCATGGCTGCT+GGG + chr5_3:3746146-3746165 None:intergenic 55.0%
TCTACCAAAGCCATGGCTGC+TGG + chr5_3:3746147-3746166 None:intergenic 55.0%
!! GAAGGAACTGGCCTTCCCTT+TGG - chr5_3:3746183-3746202 Msa0792490:CDS 55.0%
CTACGCTTCCTCCCTTGATG+AGG - chr5_3:3746275-3746294 Msa0792490:intron 55.0%
! GTCTGGGATGGGACTCCAAG+AGG + chr5_3:3745891-3745910 None:intergenic 60.0%
CATGGCTGCTGGGCTTGACA+AGG + chr5_3:3746136-3746155 None:intergenic 60.0%
CTTGTCAAGCCCAGCAGCCA+TGG - chr5_3:3746134-3746153 Msa0792490:CDS 60.0%
AAGCCCAGCAGCCATGGCTT+TGG - chr5_3:3746140-3746159 Msa0792490:CDS 60.0%
! GTCTGGGATGGGACTCCAAG+AGG + chr5_3:3745891-3745910 None:intergenic 60.0%
CATGGCTGCTGGGCTTGACA+AGG + chr5_3:3746136-3746155 None:intergenic 60.0%
CTTGTCAAGCCCAGCAGCCA+TGG - chr5_3:3746134-3746153 Msa0792490:CDS 60.0%
AAGCCCAGCAGCCATGGCTT+TGG - chr5_3:3746140-3746159 Msa0792490:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 3745679 3746599 3745679 ID=Msa0792490;Name=Msa0792490
chr5_3 mRNA 3745679 3746599 3745679 ID=Msa0792490-mRNA-1;Parent=Msa0792490;Name=Msa0792490-mRNA-1;_AED=0.01;_eAED=0.01;_QI=143|1|1|1|1|1|2|276|136
chr5_3 exon 3745679 3746268 3745679 ID=Msa0792490-mRNA-1:exon:1635;Parent=Msa0792490-mRNA-1
chr5_3 exon 3746360 3746599 3746360 ID=Msa0792490-mRNA-1:exon:1634;Parent=Msa0792490-mRNA-1
chr5_3 five_prime_UTR 3746457 3746599 3746457 ID=Msa0792490-mRNA-1:five_prime_utr;Parent=Msa0792490-mRNA-1
chr5_3 CDS 3746360 3746456 3746360 ID=Msa0792490-mRNA-1:cds;Parent=Msa0792490-mRNA-1
chr5_3 CDS 3745955 3746268 3745955 ID=Msa0792490-mRNA-1:cds;Parent=Msa0792490-mRNA-1
chr5_3 three_prime_UTR 3745679 3745954 3745679 ID=Msa0792490-mRNA-1:three_prime_utr;Parent=Msa0792490-mRNA-1
Gene Sequence

>Msa0792490

ATGGCAACCATTATTGCTGGCACCTCAACATCTTCAATCATCCGCACAGGTTTTGTGCACAAGCAACCTCTTGGAGTCCCATCCCAGACCATTGTTGGATTGCCATCAATAGCTAAGGTTGGAAGAGTGAGATGTTCCATTGAGGGAAAACCTGATGTGCAAGGAAGCAGGTCAAACATAGGAATGGGAGCATCCTTGATAGCAGCTATCTCTGCTGCAACCTTGTCAAGCCCAGCAGCCATGGCTTTGGTAGATGAGAGAATGAGCACTGAAGGAACTGGCCTTCCCTTTGGACTTAGCAACAATCTTCTTGGTTGGATCTTGTTTGGTGTCTTTGGTCTTATATGGACTCTCTATTTTATCTACGCTTCCTCCCTTGATGAGGATGAAGATTCTGGGTTGTCTCTATAA

Protein sequence

>Msa0792490

MATIIAGTSTSSIIRTGFVHKQPLGVPSQTIVGLPSIAKVGRVRCSIEGKPDVQGSRSNIGMGASLIAAISAATLSSPAAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTLYFIYASSLDEDEDSGLSL*