AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1088250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1088250 MtrunA17_Chr3g0121391 89.320 824 34 2 1 805 16 804 0.0 1422
Msa1088250 MtrunA17_Chr4g0018581 27.820 266 110 8 53 288 95 308 8.09e-19 91.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1088250 AT3G32940.1 41.980 293 107 6 8 296 2 235 6.78e-59 211
Msa1088250 AT5G51300.1 27.757 263 104 9 60 288 125 335 6.10e-18 89.4
Msa1088250 AT5G51300.2 27.757 263 104 9 60 288 125 335 6.10e-18 89.4
Msa1088250 AT5G51300.3 27.757 263 104 9 60 288 125 335 6.10e-18 89.4

Find 270 sgRNAs with CRISPR-Local

Find 443 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCAACCTCCACCTGTTTC+TGG 0.078271 7_3:+1321939 Msa1088250:CDS
AAATTTGTTGGTCTTATTTA+TGG 0.107351 7_3:+1321020 Msa1088250:CDS
AACTGCTGATTTGGAATAAA+TGG 0.142855 7_3:-1321969 None:intergenic
TCATTGTTTGTGATGGAAAA+TGG 0.154644 7_3:-1321887 None:intergenic
GTGAAAATATGATTATATTT+TGG 0.173420 7_3:-1323427 None:intergenic
TCAACTGGAAACCATTTATT+AGG 0.187606 7_3:+1322458 Msa1088250:CDS
ACACCTTCTGTATCTGTTTC+TGG 0.192170 7_3:+1321636 Msa1088250:CDS
ATTCCAACAACTTTGAAATT+TGG 0.216962 7_3:-1319730 None:intergenic
ACCCCTTTATTTGCTTCTTC+TGG 0.217183 7_3:+1321822 Msa1088250:CDS
TCTAAATTTGGTGCCAAATC+TGG 0.242872 7_3:+1319341 Msa1088250:CDS
AAAGAAAGGTTGGTTTAAAA+AGG 0.246602 7_3:-1323315 None:intergenic
TACGTCTCTGCTGCTCCTTT+TGG 0.246885 7_3:+1322812 Msa1088250:CDS
GGCCTCCATGCCTTCAAATT+CGG 0.255606 7_3:+1322583 Msa1088250:CDS
CACCAAATTTAGAGAGCTTT+TGG 0.259191 7_3:-1319331 None:intergenic
TCAAGTCTGATTTCAGCTTT+TGG 0.264980 7_3:+1321915 Msa1088250:CDS
GTCCGCGCACGCCGCCATTT+AGG 0.269653 7_3:+1322714 Msa1088250:CDS
ATTAACCCCTCACGGCAATA+TGG 0.272987 7_3:+1322247 Msa1088250:CDS
TAGCAAGGAGTTGTGGATTT+GGG 0.273271 7_3:-1321857 None:intergenic
TGCATAGAAAACTGCTGATT+TGG 0.275514 7_3:-1321978 None:intergenic
AGCCAAAAGCTCTCTAAATT+TGG 0.276842 7_3:+1319329 Msa1088250:CDS
CTAGCAAGGAGTTGTGGATT+TGG 0.279373 7_3:-1321858 None:intergenic
CTTATTACAGAAGGATTTCT+TGG 0.280524 7_3:-1322074 None:intergenic
ATGAAACAGGTCCTAATAAA+TGG 0.288884 7_3:-1322469 None:intergenic
GCCTCCATGCCTTCAAATTC+GGG 0.291164 7_3:+1322584 Msa1088250:CDS
CCAGTTGAATGAACAGTTCC+TGG 0.292551 7_3:-1322443 None:intergenic
TAAACCATGTAATATTCTTT+AGG 0.293815 7_3:+1323456 Msa1088250:three_prime_UTR
ACGAAAACAGCCAAGGAAAA+TGG 0.294817 7_3:-1320638 None:intergenic
ACCTAGACCACCATCGTCTT+TGG 0.295110 7_3:+1322412 Msa1088250:CDS
AATTTGTTGGTCTTATTTAT+GGG 0.300271 7_3:+1321021 Msa1088250:CDS
GCAACAGATGTAGGTGAAAA+TGG 0.302046 7_3:-1323109 None:intergenic
CGTGGAATCAGCAACATATT+TGG 0.304574 7_3:-1322353 None:intergenic
TGTCAGGAAGGCTAAGGTTT+TGG 0.306598 7_3:+1319517 Msa1088250:CDS
TGAATTTACACTCGATGTTT+TGG 0.310389 7_3:+1323500 Msa1088250:three_prime_UTR
TGCAGGATGTGCTGGCTTAC+CGG 0.312647 7_3:-1323071 None:intergenic
GTCGATTGTGCATACCTCTT+TGG 0.316372 7_3:-1322982 None:intergenic
ATTTGTACCCAGGATATTCT+TGG 0.322150 7_3:-1321001 None:intergenic
GAAAATGAGGGAATTGAATA+TGG 0.331793 7_3:+1323158 Msa1088250:exon
ACCAGGTGGAGGCTTGTAAC+TGG 0.338773 7_3:-1320104 None:intergenic
ACTTTCAATACTCTGGTTCA+TGG 0.339329 7_3:+1321778 Msa1088250:CDS
GGGGATAACAAATCCAGATT+TGG 0.341770 7_3:-1319354 None:intergenic
TGAGTAGTAGCTTGACTGTT+TGG 0.351937 7_3:-1322665 None:intergenic
TAATTTCATAGATTAGTAAT+AGG 0.352142 7_3:+1323223 Msa1088250:three_prime_UTR
GTGAAAATGGATCATAAATT+TGG 0.358289 7_3:-1323096 None:intergenic
TGCATTTGTGTACTGGCTGC+AGG 0.363665 7_3:-1321747 None:intergenic
GAAAACTAAGTTGCAGTATA+AGG 0.368463 7_3:+1320706 Msa1088250:CDS
GGACCAAATTTCAAAGTTGT+TGG 0.374888 7_3:+1319727 Msa1088250:CDS
CTGCCAGAAGAAGCAAATAA+AGG 0.376448 7_3:-1321825 None:intergenic
TTATTTCTAAGCAGAAAGTT+TGG 0.379477 7_3:+1323264 Msa1088250:three_prime_UTR
CCAGGAACTGTTCATTCAAC+TGG 0.379863 7_3:+1322443 Msa1088250:CDS
ATATTGCCGTGAGGGGTTAA+TGG 0.379988 7_3:-1322245 None:intergenic
CCGAGAGAAACGGGTCTTGT+AGG 0.385484 7_3:-1322296 None:intergenic
ATTCCTGATTGCTGAGCTAA+TGG 0.386076 7_3:-1322521 None:intergenic
TGCCAGAAGAAGCAAATAAA+GGG 0.395738 7_3:-1321824 None:intergenic
ATTCAGGGGCATTCAGCTGC+TGG 0.396459 7_3:+1321609 Msa1088250:intron
TGGCCTCAAACAAATCCTTT+TGG 0.396828 7_3:+1322038 Msa1088250:CDS
GTTGGTTGGCTTAAAGAAAC+TGG 0.397405 7_3:-1322140 None:intergenic
TTAAGCCAACCAACACCAAC+TGG 0.398326 7_3:+1322149 Msa1088250:CDS
TTAACCCCTCACGGCAATAT+GGG 0.399508 7_3:+1322248 Msa1088250:CDS
ATCTCCTTGCATTTGTGTAC+TGG 0.400307 7_3:-1321754 None:intergenic
CATTGTTTGTGATGGAAAAT+GGG 0.401368 7_3:-1321886 None:intergenic
AAGCTTTGAAGAGGCTGATC+AGG 0.402278 7_3:-1322746 None:intergenic
AACATTCTTTCAAGAATATG+AGG 0.402387 7_3:-1320683 None:intergenic
TTCTGAGTGTCTCTAATCTC+TGG 0.413004 7_3:-1319761 None:intergenic
TCAGGCACAGCAAACCTAAA+TGG 0.414543 7_3:-1322728 None:intergenic
GGAAGTGGAGCGGATATTCT+TGG 0.414768 7_3:-1322500 None:intergenic
GGTACACAAGAGCCACCTTT+TGG 0.417527 7_3:+1322692 Msa1088250:CDS
ATATGGAAATGCAGGGTGTC+TGG 0.421915 7_3:-1322864 None:intergenic
CTCGAAAAGCGGGAAGCAAT+AGG 0.424171 7_3:+1319964 Msa1088250:CDS
GGTGGCTTATATTCAACATC+TGG 0.425251 7_3:-1322326 None:intergenic
TGCATACCTCTTTGGACATC+AGG 0.425484 7_3:-1322974 None:intergenic
ATATACATTTATCAGGAAAC+TGG 0.426195 7_3:+1321183 Msa1088250:intron
AAAGCTGAAATCAGACTTGA+AGG 0.427089 7_3:-1321912 None:intergenic
AGTAGCTTGACTGTTTGGTC+TGG 0.429015 7_3:-1322660 None:intergenic
CCGATCTCTGCTTCCTTCAT+CGG 0.429253 7_3:+1318396 Msa1088250:five_prime_UTR
ATTTGTGGGACTTGAGATCT+TGG 0.429834 7_3:-1322902 None:intergenic
CCTAGACCACCATCGTCTTT+GGG 0.430690 7_3:+1322413 Msa1088250:CDS
ATTTGGTCTGCAGGATGTGC+TGG 0.431219 7_3:-1323079 None:intergenic
CGAGAGAAACGGGTCTTGTA+GGG 0.433708 7_3:-1322295 None:intergenic
GTTAATGGCTGGTTAGCTAT+TGG 0.434006 7_3:-1322230 None:intergenic
AAAGAGAAATTGCATGAGAA+GGG 0.436106 7_3:-1321698 None:intergenic
AACCCAGATAAAAGCAAGTC+TGG 0.436335 7_3:+1319803 Msa1088250:CDS
TGCCCCTCAAATGCAAAACT+TGG 0.437679 7_3:+1322946 Msa1088250:CDS
GTAAAATTTCCCGAATTTGA+AGG 0.438768 7_3:-1322593 None:intergenic
CTTCCATTAGCTCAGCAATC+AGG 0.444772 7_3:+1322518 Msa1088250:CDS
GAAAGAGAAATTGCATGAGA+AGG 0.446350 7_3:-1321699 None:intergenic
TCGACAAAGCTATCCTGCTC+AGG 0.450978 7_3:+1323000 Msa1088250:CDS
TAAAGGGGTATGAGATGGTA+AGG 0.453984 7_3:-1321808 None:intergenic
TATCCTGGGTACAAATTTGT+TGG 0.457043 7_3:+1321008 Msa1088250:CDS
GGATCATAAATTTGGTCTGC+AGG 0.458027 7_3:-1323088 None:intergenic
TCAACGCCTCAACCTTTGTC+TGG 0.458854 7_3:+1322194 Msa1088250:CDS
AACAATCCCTCCTTGGCGTC+CGG 0.461178 7_3:+1323052 Msa1088250:CDS
TTCTCTTTCTCTTGAAAACC+AGG 0.463182 7_3:+1321713 Msa1088250:CDS
AATGCATCCTGTGTCGGATC+AGG 0.465476 7_3:-1319494 None:intergenic
CCAGGATTACCTTTCGGGTG+TGG 0.466921 7_3:-1323136 None:intergenic
GGAAATTAGTAGTTCAATGA+TGG 0.468823 7_3:-1321432 None:intergenic
CCCATCAGTGATGATTGATT+AGG 0.470157 7_3:+1323347 Msa1088250:three_prime_UTR
GGTTGTGGACCGAGAGAAAC+GGG 0.471798 7_3:-1322305 None:intergenic
GAATCAGCAACATATTTGGC+TGG 0.473232 7_3:-1322349 None:intergenic
GGCGGCGTGCGCGGACCAAA+AGG 0.474482 7_3:-1322707 None:intergenic
CTTGGCGAAGGAAATGAAAC+AGG 0.476112 7_3:-1322482 None:intergenic
AATGAAAGTGAAGCATTTGT+TGG 0.476455 7_3:-1322116 None:intergenic
TGCCGTGAGGGGTTAATGGC+TGG 0.476961 7_3:-1322241 None:intergenic
AAGATCTCAAGTCCCACAAA+TGG 0.477988 7_3:+1322904 Msa1088250:CDS
TATGGGGCTGATGGCTCCAC+CGG 0.478931 7_3:+1322265 Msa1088250:CDS
AATGGGTGGAATCCAGAAAC+AGG 0.480800 7_3:-1321951 None:intergenic
ATTTCCCGAATTTGAAGGCA+TGG 0.481988 7_3:-1322588 None:intergenic
TCTGCACCACACAAGATGTC+TGG 0.482394 7_3:+1319281 Msa1088250:exon
TGACCAGCATATGGAAATGC+AGG 0.484597 7_3:-1322872 None:intergenic
CCCAAAGACGATGGTGGTCT+AGG 0.486702 7_3:-1322413 None:intergenic
TGAGAAGTTATTGGAGGGAG+AGG 0.486959 7_3:+1318298 None:intergenic
GTAGCTTGACTGTTTGGTCT+GGG 0.488055 7_3:-1322659 None:intergenic
AGAGGCCATGCTCCCTGAGC+AGG 0.492143 7_3:-1323013 None:intergenic
GGTGGCCCAACTTGACCAAA+AGG 0.492353 7_3:-1322053 None:intergenic
AAACAGTCAAGCTACTACTC+AGG 0.493193 7_3:+1322667 Msa1088250:CDS
CACCCTGCATTTCCATATGC+TGG 0.496063 7_3:+1322869 Msa1088250:CDS
GGTGCAGGTTGACCAGCATA+TGG 0.497213 7_3:-1322881 None:intergenic
CGACACAGGATGCATTTGTC+AGG 0.498014 7_3:+1319501 Msa1088250:CDS
GTTGTCCAGTTGGTGTTGGT+TGG 0.498904 7_3:-1322154 None:intergenic
TGACCAAAAGGATTTGTTTG+AGG 0.501608 7_3:-1322041 None:intergenic
AAGTTCCTCATACCCATTTG+TGG 0.502789 7_3:-1322917 None:intergenic
TTACAGGTCCAAGAATATCC+TGG 0.502819 7_3:+1320993 Msa1088250:intron
TCCTAATCAATCATCACTGA+TGG 0.503064 7_3:-1323348 None:intergenic
TGGAGTTGTCCAGTTGGTGT+TGG 0.507043 7_3:-1322158 None:intergenic
CCCAGTTACAAGCCTCCACC+TGG 0.509104 7_3:+1320103 Msa1088250:CDS
GGGACTTGAGATCTTGGTGC+AGG 0.510647 7_3:-1322896 None:intergenic
ACTTGATAGTAGTCTGCATT+GGG 0.511196 7_3:-1322632 None:intergenic
AAGTCCCACAAATGGGTATG+AGG 0.511470 7_3:+1322912 Msa1088250:CDS
TCACGGCAATATGGGGCTGA+TGG 0.513585 7_3:+1322256 Msa1088250:CDS
CACTTGATAGTAGTCTGCAT+TGG 0.513755 7_3:-1322633 None:intergenic
AGTTCCTCATACCCATTTGT+GGG 0.517946 7_3:-1322916 None:intergenic
GGAGATCACTTTCAATACTC+TGG 0.518595 7_3:+1321771 Msa1088250:CDS
GATTGCTGAGCTAATGGAAG+TGG 0.519966 7_3:-1322515 None:intergenic
CACTCAGAACTCAACGTTGG+TGG 0.520133 7_3:+1319775 Msa1088250:CDS
ACTGCTGATTTGGAATAAAT+GGG 0.521311 7_3:-1321968 None:intergenic
ATATGTTGACATGCATCTCT+TGG 0.521419 7_3:-1321373 None:intergenic
TAATCAGAAGCGACTGGAGA+AGG 0.523062 7_3:+1321055 Msa1088250:CDS
GGAATACAGTAAGTCATCAA+AGG 0.524589 7_3:-1323294 None:intergenic
GAGAGAGAGAGTACCGATGA+AGG 0.525455 7_3:-1318409 None:intergenic
CCACACCCGAAAGGTAATCC+TGG 0.525917 7_3:+1323136 Msa1088250:CDS
GCGTTGAAGAGACTGATGTC+TGG 0.527033 7_3:-1322178 None:intergenic
AAATTGAGAGGAAATCAAGA+TGG 0.527290 7_3:+1319468 Msa1088250:CDS
TCAGCCCCATATTGCCGTGA+GGG 0.531656 7_3:-1322253 None:intergenic
CTGCAGGTTGAAACACAGCC+TGG 0.532102 7_3:-1321731 None:intergenic
GAATACAGTAAGTCATCAAA+GGG 0.532760 7_3:-1323293 None:intergenic
TATGGAAATGCAGGGTGTCT+GGG 0.533513 7_3:-1322863 None:intergenic
AATTGAGAGGAAATCAAGAT+GGG 0.534663 7_3:+1319469 Msa1088250:CDS
GAATGAACAGTTCCTGGCAT+TGG 0.534901 7_3:-1322437 None:intergenic
AGCCTCTTCAAAGCTTTCAA+AGG 0.535341 7_3:+1322753 Msa1088250:CDS
AAAGGTAATCCTGGAAAATG+AGG 0.535442 7_3:+1323145 Msa1088250:CDS
GTTTAGCAACAATCCCTCCT+TGG 0.535610 7_3:+1323045 Msa1088250:CDS
TGCATTTGTCAGGAAGGCTA+AGG 0.536700 7_3:+1319511 Msa1088250:CDS
GAACCAATACTTACAGGCAA+AGG 0.537584 7_3:-1320157 None:intergenic
TGCTGGCTTACCGGACGCCA+AGG 0.537749 7_3:-1323062 None:intergenic
TCGTCTTTGGGACCAATGCC+AGG 0.538288 7_3:+1322425 Msa1088250:CDS
GCATCTCTTGGTAACCGCAC+TGG 0.538752 7_3:-1321361 None:intergenic
AGATCTCAAGTCCCACAAAT+GGG 0.542336 7_3:+1322905 Msa1088250:CDS
GCTATCCTGCTCAGGGAGCA+TGG 0.543642 7_3:+1323008 Msa1088250:CDS
AATCAGCAACATATTTGGCT+GGG 0.544073 7_3:-1322348 None:intergenic
CCTACAAGACCCGTTTCTCT+CGG 0.545468 7_3:+1322296 Msa1088250:CDS
AGCAACATATTTGGCTGGGG+TGG 0.546173 7_3:-1322344 None:intergenic
GACACAAGTCTCCAACCAGC+TGG 0.547951 7_3:+1322775 Msa1088250:CDS
AGCAAGGAGTTGTGGATTTG+GGG 0.548336 7_3:-1321856 None:intergenic
TTGCTAAACTTCTGATTCAG+AGG 0.548374 7_3:-1323031 None:intergenic
GGCTTACCGGACGCCAAGGA+GGG 0.550715 7_3:-1323058 None:intergenic
ATTACAGAAGGATTTCTTGG+TGG 0.551389 7_3:-1322071 None:intergenic
GCAAATAAAGGGGTATGAGA+TGG 0.551801 7_3:-1321813 None:intergenic
GTCCTTTGAAAGCTTTGAAG+AGG 0.552634 7_3:-1322755 None:intergenic
AATGCTAGAACTCGAAAAGC+GGG 0.554196 7_3:+1319954 Msa1088250:CDS
AACCTAAATGGCGGCGTGCG+CGG 0.558256 7_3:-1322716 None:intergenic
TTCCAGGGTGAAATTAAACC+AGG 0.558811 7_3:+1321329 Msa1088250:intron
ACACTGACAAATACGAAATG+AGG 0.559712 7_3:+1323194 Msa1088250:three_prime_UTR
CTGACAAATGCATCCTGTGT+CGG 0.560067 7_3:-1319500 None:intergenic
AGGTGATAATCAGAAGCGAC+TGG 0.560138 7_3:+1321049 Msa1088250:CDS
TTTAACAATGGTTTAAAACC+AGG 0.560425 7_3:-1320121 None:intergenic
GGTCTTATTTATGGGACTGA+AGG 0.561574 7_3:+1321029 Msa1088250:CDS
CCAGGTGGAGGCTTGTAACT+GGG 0.561595 7_3:-1320103 None:intergenic
TTATATTCAACATCTGGTTG+TGG 0.562195 7_3:-1322320 None:intergenic
TTATGTGCACTTATTACAGA+AGG 0.562966 7_3:-1322083 None:intergenic
TGGTTGTGGACCGAGAGAAA+CGG 0.564956 7_3:-1322306 None:intergenic
TTTGAAGGCATGGAGGCCAA+TGG 0.565210 7_3:-1322578 None:intergenic
TACAGGTCCAAGAATATCCT+GGG 0.566528 7_3:+1320994 Msa1088250:intron
GCAGAGACGTAAGCTTCAGA+TGG 0.570381 7_3:-1322800 None:intergenic
ACCTCTTTGGACATCAGGAC+TGG 0.571413 7_3:-1322969 None:intergenic
ATATCCTAAAGAATATTACA+TGG 0.574779 7_3:-1323460 None:intergenic
ATACGCCCACGTAAAACCAT+TGG 0.575532 7_3:+1322562 Msa1088250:CDS
GAAGGGCTCATTGTTTGTGA+TGG 0.577438 7_3:-1321894 None:intergenic
GAAAATGGGGTGCTCTAGCA+AGG 0.579347 7_3:-1321872 None:intergenic
ACTACTAATTTCCTCTGTAA+CGG 0.580767 7_3:+1321442 Msa1088250:CDS
ATTGGGCCGCTGTCCTTGAA+AGG 0.581635 7_3:-1322615 None:intergenic
GGATTACCTTTCGGGTGTGG+AGG 0.584094 7_3:-1323133 None:intergenic
CCGCACTGGACATCAGTGCC+TGG 0.584220 7_3:-1321347 None:intergenic
CCGATGAAGGAAGCAGAGAT+CGG 0.584547 7_3:-1318396 None:intergenic
AGTATTCATCCACATCATGC+AGG 0.586151 7_3:+1322383 Msa1088250:CDS
GGTGCTCTAGCAAGGAGTTG+TGG 0.586973 7_3:-1321864 None:intergenic
GATATACCAGACAAAGGTTG+AGG 0.588352 7_3:-1322200 None:intergenic
AACAGTCAAGCTACTACTCA+GGG 0.591753 7_3:+1322668 Msa1088250:CDS
TGTAAGATTTGTGTCGGTGG+TGG 0.592288 7_3:-1322005 None:intergenic
TGGCTCTCAAATTAATAGCA+AGG 0.592840 7_3:+1319823 Msa1088250:CDS
TTCCATCACGAAAACAGCCA+AGG 0.593130 7_3:-1320645 None:intergenic
CGACAAAGCTATCCTGCTCA+GGG 0.593335 7_3:+1323001 Msa1088250:CDS
TGTGGAGGTGCAACAGATGT+AGG 0.593982 7_3:-1323118 None:intergenic
AGAAATTGCATGAGAAGGGG+TGG 0.595200 7_3:-1321694 None:intergenic
CCTAATCAATCATCACTGAT+GGG 0.597079 7_3:-1323347 None:intergenic
AAAGTTCAAAACAAATTGAG+AGG 0.599794 7_3:+1319456 Msa1088250:CDS
ATCAGCAACATATTTGGCTG+GGG 0.601455 7_3:-1322347 None:intergenic
TTCAGATGGATCCAGCTGGT+TGG 0.603188 7_3:-1322786 None:intergenic
GGCTGGTTAGCTATTGGTGA+CGG 0.603499 7_3:-1322224 None:intergenic
GATGTCTGGAGTTGTCCAGT+TGG 0.603942 7_3:-1322164 None:intergenic
GGAGCGGATATTCTTGGCGA+AGG 0.604340 7_3:-1322494 None:intergenic
GCGTATTGAGAGGCAGAAGT+AGG 0.604696 7_3:-1322545 None:intergenic
AACAATGGTTTAAAACCAGG+TGG 0.604788 7_3:-1320118 None:intergenic
AACCAGCCATTAACCCCTCA+CGG 0.606869 7_3:+1322239 Msa1088250:CDS
GGCGTGCGCGGACCAAAAGG+TGG 0.607996 7_3:-1322704 None:intergenic
AAGAGAAATTGCATGAGAAG+GGG 0.608351 7_3:-1321697 None:intergenic
TAACCCCTCACGGCAATATG+GGG 0.609736 7_3:+1322249 Msa1088250:CDS
AAGCTGAAATCAGACTTGAA+GGG 0.612202 7_3:-1321911 None:intergenic
AATGGTTTAAAACCAGGTGG+AGG 0.613040 7_3:-1320115 None:intergenic
TGGCTTACCGGACGCCAAGG+AGG 0.615968 7_3:-1323059 None:intergenic
GGATGAATACTACCAGGTCG+TGG 0.617992 7_3:-1322371 None:intergenic
AGAAACAGATACAGAAGGTG+TGG 0.618597 7_3:-1321634 None:intergenic
AAGCTTCAGATGGATCCAGC+TGG 0.622116 7_3:-1322790 None:intergenic
ACAGGATGCATTTGTCAGGA+AGG 0.622340 7_3:+1319505 Msa1088250:CDS
GGTGACATTCCTGCATGATG+TGG 0.623925 7_3:-1322392 None:intergenic
TGGAATCCAGAAACAGGTGG+AGG 0.625781 7_3:-1321945 None:intergenic
TCATAGATTAGTAATAGGCA+CGG 0.629023 7_3:+1323228 Msa1088250:three_prime_UTR
TGCTGTAAGATTTGTGTCGG+TGG 0.629521 7_3:-1322008 None:intergenic
GAGTGCTGTAAGATTTGTGT+CGG 0.632626 7_3:-1322011 None:intergenic
AAGGTAATCCTGGAAAATGA+GGG 0.633788 7_3:+1323146 Msa1088250:CDS
TTCGTGATGGAAAATGCTGT+CGG 0.635641 7_3:+1320656 Msa1088250:CDS
ATGGGGACCTGATCCGACAC+AGG 0.637383 7_3:+1319487 Msa1088250:CDS
GCAAGGAGTTGTGGATTTGG+GGG 0.641065 7_3:-1321855 None:intergenic
AAATGCTAGAACTCGAAAAG+CGG 0.642409 7_3:+1319953 Msa1088250:CDS
CAGCCCCATATTGCCGTGAG+GGG 0.643697 7_3:-1322252 None:intergenic
GAGAGAAACGGGTCTTGTAG+GGG 0.644488 7_3:-1322294 None:intergenic
GCCAGTCCTGATGTCCAAAG+AGG 0.645143 7_3:+1322968 Msa1088250:CDS
ATGTTGCTGATTCCACGACC+TGG 0.646953 7_3:+1322359 Msa1088250:CDS
GGCATTGGTCCCAAAGACGA+TGG 0.647277 7_3:-1322422 None:intergenic
AGAGAAACGGGTCTTGTAGG+GGG 0.647357 7_3:-1322293 None:intergenic
ATGTCAACTCACCGTTACAG+AGG 0.648823 7_3:-1321453 None:intergenic
CTGAGCTAATGGAAGTGGAG+CGG 0.650968 7_3:-1322510 None:intergenic
GGAAATGCAGGGTGTCTGGG+TGG 0.652818 7_3:-1322860 None:intergenic
TCATTAGTCCCTATTATCCG+AGG 0.654001 7_3:+1319395 Msa1088250:CDS
TGAGCTACGTCAGACCACTA+CGG 0.654542 7_3:+1318337 Msa1088250:five_prime_UTR
AAATCTTACAGCACTCACAA+TGG 0.658430 7_3:+1322018 Msa1088250:CDS
ATTGTTTGTGATGGAAAATG+GGG 0.661649 7_3:-1321885 None:intergenic
GACCAGCATATGGAAATGCA+GGG 0.662409 7_3:-1322871 None:intergenic
AGACCAACAAATTTGTACCC+AGG 0.663255 7_3:-1321011 None:intergenic
GTTGCACCTCCACACCCGAA+AGG 0.663887 7_3:+1323127 Msa1088250:CDS
ATTGGTCCCAAAGACGATGG+TGG 0.664092 7_3:-1322419 None:intergenic
CAATGCAGACTACTATCAAG+TGG 0.664785 7_3:+1322634 Msa1088250:CDS
ATCAGCCCCATATTGCCGTG+AGG 0.664920 7_3:-1322254 None:intergenic
GCAGCCAGTACACAAATGCA+AGG 0.664990 7_3:+1321750 Msa1088250:CDS
GGCACAGCAAACCTAAATGG+CGG 0.665012 7_3:-1322725 None:intergenic
GCCAGAAGAAGCAAATAAAG+GGG 0.669347 7_3:-1321823 None:intergenic
GGGTGGAATCCAGAAACAGG+TGG 0.670920 7_3:-1321948 None:intergenic
GCTGATTTGGAATAAATGGG+TGG 0.671775 7_3:-1321965 None:intergenic
TCTCCAGAAACAGATACAGA+AGG 0.675375 7_3:-1321639 None:intergenic
AAAGGGGTATGAGATGGTAA+GGG 0.676939 7_3:-1321807 None:intergenic
CATGGAACAAAAGCAGACAC+AGG 0.677149 7_3:+1321222 Msa1088250:CDS
TCCCGAATTTGAAGGCATGG+AGG 0.679044 7_3:-1322585 None:intergenic
GTGATGGAAAATGCTGTCGG+AGG 0.689250 7_3:+1320659 Msa1088250:CDS
AGACACTCAGAACTCAACGT+TGG 0.697590 7_3:+1319772 Msa1088250:CDS
ATTGAGAGGAAATCAAGATG+GGG 0.702113 7_3:+1319470 Msa1088250:CDS
GACGGCGATATACCAGACAA+AGG 0.704314 7_3:-1322206 None:intergenic
TGATGTGGATGAATACTACC+AGG 0.708791 7_3:-1322377 None:intergenic
AGTGCGCGTAGCCACCGTAG+TGG 0.717946 7_3:-1318351 None:intergenic
AGTCAAGCTACTACTCAGGG+TGG 0.734032 7_3:+1322671 Msa1088250:CDS
GTAGCTCCAGACATCTTGTG+TGG 0.735809 7_3:-1319287 None:intergenic
CCAGGCACTGATGTCCAGTG+CGG 0.751204 7_3:+1321347 Msa1088250:CDS
GCTACGTCAGACCACTACGG+TGG 0.768773 7_3:+1318340 Msa1088250:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTTAGTATATATTAG+TGG + chr7_3:1319139-1319158 Msa1088250:intron 10.0%
!! ATTTAATATATACATTTATC+AGG + chr7_3:1321176-1321195 Msa1088250:intron 10.0%
!!! TGAAAGTATAAACATTAATT+TGG - chr7_3:1318587-1318606 None:intergenic 15.0%
!! ATAAAATGCTTAATATAGTT+GGG + chr7_3:1318628-1318647 Msa1088250:intron 15.0%
!!! TATTTTTCTTTTCTAAATCA+AGG - chr7_3:1318861-1318880 None:intergenic 15.0%
!! CTAAAATTACATTATAAGTT+GGG + chr7_3:1319604-1319623 Msa1088250:intron 15.0%
!! AAAAAGGAAATATATACTTA+AGG - chr7_3:1319998-1320017 None:intergenic 15.0%
!! AATCCATATTATCATTATTA+AGG + chr7_3:1320379-1320398 Msa1088250:intron 15.0%
!! ATCCATATTATCATTATTAA+GGG + chr7_3:1320380-1320399 Msa1088250:intron 15.0%
!! AATATCTTAATGTTATCATT+TGG + chr7_3:1320856-1320875 Msa1088250:intron 15.0%
!! TTAAAAAGTTATACAACAAA+GGG - chr7_3:1320885-1320904 None:intergenic 15.0%
!! AAAGATTAGAATTTAATTCA+GGG - chr7_3:1321144-1321163 None:intergenic 15.0%
!! AAAAGATTAGAATTTAATTC+AGG - chr7_3:1321145-1321164 None:intergenic 15.0%
!!! ACATAACATTTTATGATTTA+TGG + chr7_3:1321489-1321508 Msa1088250:intron 15.0%
!! TAATTTCATAGATTAGTAAT+AGG + chr7_3:1323223-1323242 Msa1088250:three_prime_UTR 15.0%
!!! GTGAAAATATGATTATATTT+TGG - chr7_3:1323430-1323449 None:intergenic 15.0%
!! ATTAATGTTTATACTTTCAG+AGG + chr7_3:1318588-1318607 Msa1088250:intron 20.0%
!! CATAAAATGCTTAATATAGT+TGG + chr7_3:1318627-1318646 Msa1088250:intron 20.0%
!! GAAATATTCTCATATGATAA+AGG + chr7_3:1318955-1318974 Msa1088250:intron 20.0%
!! TTTGATTATATAACTACCAA+CGG - chr7_3:1319120-1319139 None:intergenic 20.0%
!!! ACAAAATAGTTTGTGTTATT+TGG + chr7_3:1319167-1319186 Msa1088250:intron 20.0%
!! GCTAAAATTACATTATAAGT+TGG + chr7_3:1319603-1319622 Msa1088250:intron 20.0%
!! AAACTACTGATGTTTATTTA+TGG + chr7_3:1319916-1319935 Msa1088250:intron 20.0%
!! AACAACAAATTTAAATAGCA+CGG - chr7_3:1320205-1320224 None:intergenic 20.0%
!! TCATTAGTTATGAAAAGTAA+AGG + chr7_3:1320237-1320256 Msa1088250:intron 20.0%
!! TCCATATTATCATTATTAAG+GGG + chr7_3:1320381-1320400 Msa1088250:intron 20.0%
!! CAACATAAAGAAATACTATA+AGG - chr7_3:1320427-1320446 None:intergenic 20.0%
!! GAATATCGTAATTGTAATAT+AGG - chr7_3:1320778-1320797 None:intergenic 20.0%
!! CTTAAAAAGTTATACAACAA+AGG - chr7_3:1320886-1320905 None:intergenic 20.0%
!!! AAATTTGTTGGTCTTATTTA+TGG + chr7_3:1321020-1321039 Msa1088250:CDS 20.0%
!!! AATTTGTTGGTCTTATTTAT+GGG + chr7_3:1321021-1321040 Msa1088250:CDS 20.0%
!! TAAACCATGTAATATTCTTT+AGG + chr7_3:1323456-1323475 Msa1088250:three_prime_UTR 20.0%
!! ATATCCTAAAGAATATTACA+TGG - chr7_3:1323463-1323482 None:intergenic 20.0%
!! TATAAACATTAATTTGGCGT+TGG - chr7_3:1318581-1318600 None:intergenic 25.0%
!!! CTATTTTCAGCTTATTTTCA+TGG + chr7_3:1318782-1318801 Msa1088250:intron 25.0%
! TAATAAACTACTGTTACTGA+TGG + chr7_3:1319000-1319019 Msa1088250:intron 25.0%
! TACAAATGTTTACTCTACAT+AGG + chr7_3:1319072-1319091 Msa1088250:intron 25.0%
! ACAAATGTTTACTCTACATA+GGG + chr7_3:1319073-1319092 Msa1088250:intron 25.0%
!!! ATCCTAATAACTTGTTTTTG+GGG - chr7_3:1319376-1319395 None:intergenic 25.0%
!!! GATCCTAATAACTTGTTTTT+GGG - chr7_3:1319377-1319396 None:intergenic 25.0%
!!! TGATCCTAATAACTTGTTTT+TGG - chr7_3:1319378-1319397 None:intergenic 25.0%
! AAAGTTCAAAACAAATTGAG+AGG + chr7_3:1319456-1319475 Msa1088250:CDS 25.0%
!!! ATTCCAACAACTTTGAAATT+TGG - chr7_3:1319733-1319752 None:intergenic 25.0%
!!! TCTAATTTTAGTATTTCACC+TGG - chr7_3:1320082-1320101 None:intergenic 25.0%
!! TTTAACAATGGTTTAAAACC+AGG - chr7_3:1320124-1320143 None:intergenic 25.0%
!! ACATTGTCTTCTTTTAACAA+TGG - chr7_3:1320136-1320155 None:intergenic 25.0%
!!! ATTTTAGAACCAATACTTAC+AGG - chr7_3:1320166-1320185 None:intergenic 25.0%
! AATTTAAATAGCACGGAATT+GGG - chr7_3:1320198-1320217 None:intergenic 25.0%
! AAATTTAAATAGCACGGAAT+TGG - chr7_3:1320199-1320218 None:intergenic 25.0%
! AAAGTAAAGGATACATTTAC+TGG + chr7_3:1320250-1320269 Msa1088250:intron 25.0%
! ATGATAATATGGATTTGACA+AGG - chr7_3:1320374-1320393 None:intergenic 25.0%
! ACCCCTTAATAATGATAATA+TGG - chr7_3:1320385-1320404 None:intergenic 25.0%
!!! GCCTTATTTTATTTCTTCAT+GGG + chr7_3:1320503-1320522 Msa1088250:intron 25.0%
! ACCCATGAAGAAATAAAATA+AGG - chr7_3:1320507-1320526 None:intergenic 25.0%
! AACATTCTTTCAAGAATATG+AGG - chr7_3:1320686-1320705 None:intergenic 25.0%
! TACAATTACGATATTCAAGT+AGG + chr7_3:1320782-1320801 Msa1088250:intron 25.0%
! AAGATTAGATACCAACAAAA+TGG - chr7_3:1321086-1321105 None:intergenic 25.0%
! ATATACATTTATCAGGAAAC+TGG + chr7_3:1321183-1321202 Msa1088250:intron 25.0%
!! TGTTCCATGAATTTTTATCT+TGG - chr7_3:1321211-1321230 None:intergenic 25.0%
! AGAAAGTAAGTTCTTTAATG+TGG + chr7_3:1321247-1321266 Msa1088250:intron 25.0%
! GTGAAAATGGATCATAAATT+TGG - chr7_3:1323099-1323118 None:intergenic 25.0%
!!! TTATTTCTAAGCAGAAAGTT+TGG + chr7_3:1323264-1323283 Msa1088250:three_prime_UTR 25.0%
!!! AAAGAAAGGTTGGTTTAAAA+AGG - chr7_3:1323318-1323337 None:intergenic 25.0%
CGTAAATGAAGATTTGAAGA+GGG - chr7_3:1318482-1318501 None:intergenic 30.0%
TCGTAAATGAAGATTTGAAG+AGG - chr7_3:1318483-1318502 None:intergenic 30.0%
! CCTATGTTTAAGTTTGAATC+AGG - chr7_3:1318521-1318540 None:intergenic 30.0%
CCTGATTCAAACTTAAACAT+AGG + chr7_3:1318518-1318537 Msa1088250:intron 30.0%
ATGTTTATACTTTCAGAGGT+CGG + chr7_3:1318592-1318611 Msa1088250:intron 30.0%
GTTAGTAGATAAGCTTAAAG+AGG - chr7_3:1318713-1318732 None:intergenic 30.0%
!! CTACTAACATAAGTTTTGTG+AGG + chr7_3:1318725-1318744 Msa1088250:intron 30.0%
ATCAAGGAAGCTATAAAATG+AGG - chr7_3:1318845-1318864 None:intergenic 30.0%
! ATCATTTCTAAGGGTATGTT+TGG - chr7_3:1318914-1318933 None:intergenic 30.0%
GCACTTAGTATCATTTCTAA+GGG - chr7_3:1318923-1318942 None:intergenic 30.0%
AGCACTTAGTATCATTTCTA+AGG - chr7_3:1318924-1318943 None:intergenic 30.0%
!! CAAAAAAGTACTGTTACTGT+TGG + chr7_3:1319029-1319048 Msa1088250:intron 30.0%
TTGTACATGTGATCAAAGAT+TGG - chr7_3:1319214-1319233 None:intergenic 30.0%
GATCACATGTACAAAGTTAT+TGG + chr7_3:1319220-1319239 Msa1088250:intron 30.0%
ATCCCCAAAAACAAGTTATT+AGG + chr7_3:1319371-1319390 Msa1088250:CDS 30.0%
AAATTGAGAGGAAATCAAGA+TGG + chr7_3:1319468-1319487 Msa1088250:CDS 30.0%
AATTGAGAGGAAATCAAGAT+GGG + chr7_3:1319469-1319488 Msa1088250:CDS 30.0%
ATAACAGAGAATGCTTAGAA+AGG - chr7_3:1319565-1319584 None:intergenic 30.0%
TTAATAATTCGCATGAGTTC+TGG + chr7_3:1319649-1319668 Msa1088250:intron 30.0%
!! ATTGGTTCTAAAATTCTGCT+AGG + chr7_3:1320172-1320191 Msa1088250:intron 30.0%
ATTATCATTATTAAGGGGTG+TGG + chr7_3:1320386-1320405 Msa1088250:intron 30.0%
GATTTGCACCAATACATATT+AGG + chr7_3:1320473-1320492 Msa1088250:intron 30.0%
!!! GGCCTTATTTTATTTCTTCA+TGG + chr7_3:1320502-1320521 Msa1088250:intron 30.0%
TAACACTCATTAACATGCTA+AGG - chr7_3:1320552-1320571 None:intergenic 30.0%
TTAGTTAACTGCTCAAAAAC+AGG + chr7_3:1320569-1320588 Msa1088250:intron 30.0%
GAAAACTAAGTTGCAGTATA+AGG + chr7_3:1320706-1320725 Msa1088250:CDS 30.0%
ATCGTAATTGTAATATAGGC+TGG - chr7_3:1320774-1320793 None:intergenic 30.0%
! AGAAGGTAAAACCATTTTGT+TGG + chr7_3:1321072-1321091 Msa1088250:intron 30.0%
GGTACCAAGATAAAAATTCA+TGG + chr7_3:1321204-1321223 Msa1088250:CDS 30.0%
!!! AGCTGATAGTTTTGATAAAG+TGG + chr7_3:1321397-1321416 Msa1088250:CDS 30.0%
GGAAATTAGTAGTTCAATGA+TGG - chr7_3:1321435-1321454 None:intergenic 30.0%
ACTACTAATTTCCTCTGTAA+CGG + chr7_3:1321442-1321461 Msa1088250:CDS 30.0%
AAAGAGAAATTGCATGAGAA+GGG - chr7_3:1321701-1321720 None:intergenic 30.0%
! ATTGTTTGTGATGGAAAATG+GGG - chr7_3:1321888-1321907 None:intergenic 30.0%
! CATTGTTTGTGATGGAAAAT+GGG - chr7_3:1321889-1321908 None:intergenic 30.0%
! TCATTGTTTGTGATGGAAAA+TGG - chr7_3:1321890-1321909 None:intergenic 30.0%
!! ACTGCTGATTTGGAATAAAT+GGG - chr7_3:1321971-1321990 None:intergenic 30.0%
!! AACTGCTGATTTGGAATAAA+TGG - chr7_3:1321972-1321991 None:intergenic 30.0%
CTTATTACAGAAGGATTTCT+TGG - chr7_3:1322077-1322096 None:intergenic 30.0%
TTATGTGCACTTATTACAGA+AGG - chr7_3:1322086-1322105 None:intergenic 30.0%
! AATGAAAGTGAAGCATTTGT+TGG - chr7_3:1322119-1322138 None:intergenic 30.0%
TTATATTCAACATCTGGTTG+TGG - chr7_3:1322323-1322342 None:intergenic 30.0%
TCAACTGGAAACCATTTATT+AGG + chr7_3:1322458-1322477 Msa1088250:CDS 30.0%
ATGAAACAGGTCCTAATAAA+TGG - chr7_3:1322472-1322491 None:intergenic 30.0%
GTAAAATTTCCCGAATTTGA+AGG - chr7_3:1322596-1322615 None:intergenic 30.0%
GAAAATGAGGGAATTGAATA+TGG + chr7_3:1323158-1323177 Msa1088250:exon 30.0%
TCATAGATTAGTAATAGGCA+CGG + chr7_3:1323228-1323247 Msa1088250:three_prime_UTR 30.0%
GAATACAGTAAGTCATCAAA+GGG - chr7_3:1323296-1323315 None:intergenic 30.0%
! TGAATTTACACTCGATGTTT+TGG + chr7_3:1323500-1323519 Msa1088250:three_prime_UTR 30.0%
! TATGTTTGGATGGAGGATTT+TGG - chr7_3:1318900-1318919 None:intergenic 35.0%
! TTTCTAAGGGTATGTTTGGA+TGG - chr7_3:1318910-1318929 None:intergenic 35.0%
TACATGTGATCAAAGATTGG+TGG - chr7_3:1319211-1319230 None:intergenic 35.0%
AGCCAAAAGCTCTCTAAATT+TGG + chr7_3:1319329-1319348 Msa1088250:CDS 35.0%
! CACCAAATTTAGAGAGCTTT+TGG - chr7_3:1319334-1319353 None:intergenic 35.0%
!! TCTAAATTTGGTGCCAAATC+TGG + chr7_3:1319341-1319360 Msa1088250:CDS 35.0%
!!! TTTTAGCTCCTCGGATAATA+GGG - chr7_3:1319406-1319425 None:intergenic 35.0%
!!! TTTTTAGCTCCTCGGATAAT+AGG - chr7_3:1319407-1319426 None:intergenic 35.0%
ATTGAGAGGAAATCAAGATG+GGG + chr7_3:1319470-1319489 Msa1088250:CDS 35.0%
GGACCAAATTTCAAAGTTGT+TGG + chr7_3:1319727-1319746 Msa1088250:CDS 35.0%
TGGCTCTCAAATTAATAGCA+AGG + chr7_3:1319823-1319842 Msa1088250:CDS 35.0%
AAATGCTAGAACTCGAAAAG+CGG + chr7_3:1319953-1319972 Msa1088250:CDS 35.0%
ATTAAAGGGGAGGAACAAAA+AGG - chr7_3:1320014-1320033 None:intergenic 35.0%
GCAGGCTATAAGAATTAAAG+GGG - chr7_3:1320027-1320046 None:intergenic 35.0%
CGCAGGCTATAAGAATTAAA+GGG - chr7_3:1320028-1320047 None:intergenic 35.0%
ACGCAGGCTATAAGAATTAA+AGG - chr7_3:1320029-1320048 None:intergenic 35.0%
CCTGGATATGATTAACATCA+AGG - chr7_3:1320064-1320083 None:intergenic 35.0%
CCTTGATGTTAATCATATCC+AGG + chr7_3:1320061-1320080 Msa1088250:intron 35.0%
! AACAATGGTTTAAAACCAGG+TGG - chr7_3:1320121-1320140 None:intergenic 35.0%
TGCAATATCTTCCCAGTTAT+TGG + chr7_3:1320316-1320335 Msa1088250:intron 35.0%
GTGAATAGCAGCAATATACT+CGG + chr7_3:1320338-1320357 Msa1088250:intron 35.0%
TTTATGTTGTGAGCTGATGA+GGG + chr7_3:1320438-1320457 Msa1088250:intron 35.0%
TTGCACCAATACATATTAGG+CGG + chr7_3:1320476-1320495 Msa1088250:intron 35.0%
TCATGGGTTCAAATTGAACA+TGG + chr7_3:1320519-1320538 Msa1088250:intron 35.0%
! TTCTGGAAAAGGAAAAGTTC+TGG - chr7_3:1320605-1320624 None:intergenic 35.0%
! GAGAAGAACATTTCTGGAAA+AGG - chr7_3:1320616-1320635 None:intergenic 35.0%
ATGGATGAGAAGAACATTTC+TGG - chr7_3:1320622-1320641 None:intergenic 35.0%
! TTCTTCTCATCCATTTTCCT+TGG + chr7_3:1320628-1320647 Msa1088250:CDS 35.0%
! AGTTTTCGTTGTAGAACTTC+AGG - chr7_3:1320954-1320973 None:intergenic 35.0%
ATATGCAGTACCATCTTTAC+AGG + chr7_3:1320977-1320996 Msa1088250:intron 35.0%
TATTCTTGGACCTGTAAAGA+TGG - chr7_3:1320990-1321009 None:intergenic 35.0%
ATTTGTACCCAGGATATTCT+TGG - chr7_3:1321004-1321023 None:intergenic 35.0%
TATCCTGGGTACAAATTTGT+TGG + chr7_3:1321008-1321027 Msa1088250:CDS 35.0%
GGATGTCAATCAAAAGATAG+GGG - chr7_3:1321123-1321142 None:intergenic 35.0%
GGGATGTCAATCAAAAGATA+GGG - chr7_3:1321124-1321143 None:intergenic 35.0%
AGGGATGTCAATCAAAAGAT+AGG - chr7_3:1321125-1321144 None:intergenic 35.0%
CTTTGTATGTTCCATTTCCA+GGG + chr7_3:1321314-1321333 Msa1088250:intron 35.0%
! GTTTAATTTCACCCTGGAAA+TGG - chr7_3:1321328-1321347 None:intergenic 35.0%
ATATGTTGACATGCATCTCT+TGG - chr7_3:1321376-1321395 None:intergenic 35.0%
TCTTCTATGCTCTTCTATTC+AGG + chr7_3:1321593-1321612 Msa1088250:intron 35.0%
CTTCTATGCTCTTCTATTCA+GGG + chr7_3:1321594-1321613 Msa1088250:intron 35.0%
TTCTATGCTCTTCTATTCAG+GGG + chr7_3:1321595-1321614 Msa1088250:intron 35.0%
AAGAGAAATTGCATGAGAAG+GGG - chr7_3:1321700-1321719 None:intergenic 35.0%
GAAAGAGAAATTGCATGAGA+AGG - chr7_3:1321702-1321721 None:intergenic 35.0%
TTCTCTTTCTCTTGAAAACC+AGG + chr7_3:1321713-1321732 Msa1088250:CDS 35.0%
! ACTTTCAATACTCTGGTTCA+TGG + chr7_3:1321778-1321797 Msa1088250:CDS 35.0%
TGCCAGAAGAAGCAAATAAA+GGG - chr7_3:1321827-1321846 None:intergenic 35.0%
AAGCTGAAATCAGACTTGAA+GGG - chr7_3:1321914-1321933 None:intergenic 35.0%
AAAGCTGAAATCAGACTTGA+AGG - chr7_3:1321915-1321934 None:intergenic 35.0%
! TCAAGTCTGATTTCAGCTTT+TGG + chr7_3:1321915-1321934 Msa1088250:CDS 35.0%
! TGCATAGAAAACTGCTGATT+TGG - chr7_3:1321981-1322000 None:intergenic 35.0%
AAATCTTACAGCACTCACAA+TGG + chr7_3:1322018-1322037 Msa1088250:CDS 35.0%
! TGACCAAAAGGATTTGTTTG+AGG - chr7_3:1322044-1322063 None:intergenic 35.0%
! ACAAATCCTTTTGGTCAAGT+TGG + chr7_3:1322047-1322066 Msa1088250:CDS 35.0%
! CAAATCCTTTTGGTCAAGTT+GGG + chr7_3:1322048-1322067 Msa1088250:CDS 35.0%
ATTACAGAAGGATTTCTTGG+TGG - chr7_3:1322074-1322093 None:intergenic 35.0%
AATCAGCAACATATTTGGCT+GGG - chr7_3:1322351-1322370 None:intergenic 35.0%
! TCGGGAAATTTTACCTTTCA+AGG + chr7_3:1322602-1322621 Msa1088250:CDS 35.0%
! ATTTTACCTTTCAAGGACAG+CGG + chr7_3:1322609-1322628 Msa1088250:CDS 35.0%
! ACTTGATAGTAGTCTGCATT+GGG - chr7_3:1322635-1322654 None:intergenic 35.0%
TTGCTAAACTTCTGATTCAG+AGG - chr7_3:1323034-1323053 None:intergenic 35.0%
! ATTTTCCAGGATTACCTTTC+GGG - chr7_3:1323144-1323163 None:intergenic 35.0%
! CATTTTCCAGGATTACCTTT+CGG - chr7_3:1323145-1323164 None:intergenic 35.0%
AAAGGTAATCCTGGAAAATG+AGG + chr7_3:1323145-1323164 Msa1088250:CDS 35.0%
AAGGTAATCCTGGAAAATGA+GGG + chr7_3:1323146-1323165 Msa1088250:CDS 35.0%
! ATTCAATTCCCTCATTTTCC+AGG - chr7_3:1323157-1323176 None:intergenic 35.0%
ACACTGACAAATACGAAATG+AGG + chr7_3:1323194-1323213 Msa1088250:three_prime_UTR 35.0%
GGAATACAGTAAGTCATCAA+AGG - chr7_3:1323297-1323316 None:intergenic 35.0%
GCATTCAGAAAAAGAAAGGT+TGG - chr7_3:1323328-1323347 None:intergenic 35.0%
ATGGGCATTCAGAAAAAGAA+AGG - chr7_3:1323332-1323351 None:intergenic 35.0%
CCTAATCAATCATCACTGAT+GGG - chr7_3:1323350-1323369 None:intergenic 35.0%
TCCTAATCAATCATCACTGA+TGG - chr7_3:1323351-1323370 None:intergenic 35.0%
! TTTGGATGGAGGATTTTGGA+GGG - chr7_3:1318896-1318915 None:intergenic 40.0%
CATAGGGAATGCATGTTCTT+TGG + chr7_3:1319089-1319108 Msa1088250:intron 40.0%
ATGTTCTTTGGTATTGCCGT+TGG + chr7_3:1319101-1319120 Msa1088250:intron 40.0%
GGGGATAACAAATCCAGATT+TGG - chr7_3:1319357-1319376 None:intergenic 40.0%
TCATTAGTCCCTATTATCCG+AGG + chr7_3:1319395-1319414 Msa1088250:CDS 40.0%
ATCCGAGGAGCTAAAAAAGA+TGG + chr7_3:1319410-1319429 Msa1088250:CDS 40.0%
TCCGAGGAGCTAAAAAAGAT+GGG + chr7_3:1319411-1319430 Msa1088250:CDS 40.0%
GCTAAAAAAGATGGGGTTAC+TGG + chr7_3:1319419-1319438 Msa1088250:CDS 40.0%
AGCATCACTTATTCAGACCT+TGG - chr7_3:1319678-1319697 None:intergenic 40.0%
! ACACCTTTTGTAGATTCGTG+TGG + chr7_3:1319706-1319725 Msa1088250:intron 40.0%
TTCTGAGTGTCTCTAATCTC+TGG - chr7_3:1319764-1319783 None:intergenic 40.0%
AACCCAGATAAAAGCAAGTC+TGG + chr7_3:1319803-1319822 Msa1088250:CDS 40.0%
!! AGCCAGACTTGCTTTTATCT+GGG - chr7_3:1319808-1319827 None:intergenic 40.0%
AATGCTAGAACTCGAAAAGC+GGG + chr7_3:1319954-1319973 Msa1088250:CDS 40.0%
GGCTATAAGAATTAAAGGGG+AGG - chr7_3:1320024-1320043 None:intergenic 40.0%
AAGGTCATTATCGAATACGC+AGG - chr7_3:1320045-1320064 None:intergenic 40.0%
! AATGGTTTAAAACCAGGTGG+AGG - chr7_3:1320118-1320137 None:intergenic 40.0%
GTTCCTTTGCCTGTAAGTAT+TGG + chr7_3:1320154-1320173 Msa1088250:intron 40.0%
GAACCAATACTTACAGGCAA+AGG - chr7_3:1320160-1320179 None:intergenic 40.0%
GCTGCTATTCACCAATAACT+GGG - chr7_3:1320330-1320349 None:intergenic 40.0%
TGCTGCTATTCACCAATAAC+TGG - chr7_3:1320331-1320350 None:intergenic 40.0%
CTTTATGTTGTGAGCTGATG+AGG + chr7_3:1320437-1320456 Msa1088250:intron 40.0%
TTATGTTGTGAGCTGATGAG+GGG + chr7_3:1320439-1320458 Msa1088250:intron 40.0%
! AGCTGATGAGGGGAAATTTT+AGG + chr7_3:1320449-1320468 Msa1088250:intron 40.0%
ACGAAAACAGCCAAGGAAAA+TGG - chr7_3:1320641-1320660 None:intergenic 40.0%
! TTCGTGATGGAAAATGCTGT+CGG + chr7_3:1320656-1320675 Msa1088250:CDS 40.0%
TTACAGGTCCAAGAATATCC+TGG + chr7_3:1320993-1321012 Msa1088250:intron 40.0%
TACAGGTCCAAGAATATCCT+GGG + chr7_3:1320994-1321013 Msa1088250:intron 40.0%
AGACCAACAAATTTGTACCC+AGG - chr7_3:1321014-1321033 None:intergenic 40.0%
!! GGTCTTATTTATGGGACTGA+AGG + chr7_3:1321029-1321048 Msa1088250:CDS 40.0%
AGATAGGGGTTGCATATAAG+AGG - chr7_3:1321109-1321128 None:intergenic 40.0%
! GTGGCTTTTATTCTGCATCA+AGG + chr7_3:1321266-1321285 Msa1088250:intron 40.0%
GCTTTGTATGTTCCATTTCC+AGG + chr7_3:1321313-1321332 Msa1088250:intron 40.0%
TTCCAGGGTGAAATTAAACC+AGG + chr7_3:1321329-1321348 Msa1088250:intron 40.0%
AGAAACAGATACAGAAGGTG+TGG - chr7_3:1321637-1321656 None:intergenic 40.0%
ACACCTTCTGTATCTGTTTC+TGG + chr7_3:1321636-1321655 Msa1088250:CDS 40.0%
TCTCCAGAAACAGATACAGA+AGG - chr7_3:1321642-1321661 None:intergenic 40.0%
ATCTCCTTGCATTTGTGTAC+TGG - chr7_3:1321757-1321776 None:intergenic 40.0%
GGAGATCACTTTCAATACTC+TGG + chr7_3:1321771-1321790 Msa1088250:CDS 40.0%
! AAAGGGGTATGAGATGGTAA+GGG - chr7_3:1321810-1321829 None:intergenic 40.0%
! TAAAGGGGTATGAGATGGTA+AGG - chr7_3:1321811-1321830 None:intergenic 40.0%
! GCAAATAAAGGGGTATGAGA+TGG - chr7_3:1321816-1321835 None:intergenic 40.0%
! ACCCCTTTATTTGCTTCTTC+TGG + chr7_3:1321822-1321841 Msa1088250:CDS 40.0%
GCCAGAAGAAGCAAATAAAG+GGG - chr7_3:1321826-1321845 None:intergenic 40.0%
CTGCCAGAAGAAGCAAATAA+AGG - chr7_3:1321828-1321847 None:intergenic 40.0%
TAGCAAGGAGTTGTGGATTT+GGG - chr7_3:1321860-1321879 None:intergenic 40.0%
!! GCTGATTTGGAATAAATGGG+TGG - chr7_3:1321968-1321987 None:intergenic 40.0%
! GAGTGCTGTAAGATTTGTGT+CGG - chr7_3:1322014-1322033 None:intergenic 40.0%
! TGGCCTCAAACAAATCCTTT+TGG + chr7_3:1322038-1322057 Msa1088250:CDS 40.0%
!! GTTGGTTGGCTTAAAGAAAC+TGG - chr7_3:1322143-1322162 None:intergenic 40.0%
GATATACCAGACAAAGGTTG+AGG - chr7_3:1322203-1322222 None:intergenic 40.0%
! GTTAATGGCTGGTTAGCTAT+TGG - chr7_3:1322233-1322252 None:intergenic 40.0%
GGTGGCTTATATTCAACATC+TGG - chr7_3:1322329-1322348 None:intergenic 40.0%
ATCAGCAACATATTTGGCTG+GGG - chr7_3:1322350-1322369 None:intergenic 40.0%
GAATCAGCAACATATTTGGC+TGG - chr7_3:1322352-1322371 None:intergenic 40.0%
CGTGGAATCAGCAACATATT+TGG - chr7_3:1322356-1322375 None:intergenic 40.0%
TGATGTGGATGAATACTACC+AGG - chr7_3:1322380-1322399 None:intergenic 40.0%
AGTATTCATCCACATCATGC+AGG + chr7_3:1322383-1322402 Msa1088250:CDS 40.0%
ATTCCTGATTGCTGAGCTAA+TGG - chr7_3:1322524-1322543 None:intergenic 40.0%
ATTTCCCGAATTTGAAGGCA+TGG - chr7_3:1322591-1322610 None:intergenic 40.0%
! CACTTGATAGTAGTCTGCAT+TGG - chr7_3:1322636-1322655 None:intergenic 40.0%
CAATGCAGACTACTATCAAG+TGG + chr7_3:1322634-1322653 Msa1088250:CDS 40.0%
TGAGTAGTAGCTTGACTGTT+TGG - chr7_3:1322668-1322687 None:intergenic 40.0%
AAACAGTCAAGCTACTACTC+AGG + chr7_3:1322667-1322686 Msa1088250:CDS 40.0%
AACAGTCAAGCTACTACTCA+GGG + chr7_3:1322668-1322687 Msa1088250:CDS 40.0%
AGCCTCTTCAAAGCTTTCAA+AGG + chr7_3:1322753-1322772 Msa1088250:CDS 40.0%
!! GTCCTTTGAAAGCTTTGAAG+AGG - chr7_3:1322758-1322777 None:intergenic 40.0%
ATTTGTGGGACTTGAGATCT+TGG - chr7_3:1322905-1322924 None:intergenic 40.0%
AAGATCTCAAGTCCCACAAA+TGG + chr7_3:1322904-1322923 Msa1088250:CDS 40.0%
AGATCTCAAGTCCCACAAAT+GGG + chr7_3:1322905-1322924 Msa1088250:CDS 40.0%
AGTTCCTCATACCCATTTGT+GGG - chr7_3:1322919-1322938 None:intergenic 40.0%
AAGTTCCTCATACCCATTTG+TGG - chr7_3:1322920-1322939 None:intergenic 40.0%
! TGGCCAAGTTTTGCATTTGA+GGG - chr7_3:1322952-1322971 None:intergenic 40.0%
GGATCATAAATTTGGTCTGC+AGG - chr7_3:1323091-1323110 None:intergenic 40.0%
GCAACAGATGTAGGTGAAAA+TGG - chr7_3:1323112-1323131 None:intergenic 40.0%
CCCATCAGTGATGATTGATT+AGG + chr7_3:1323347-1323366 Msa1088250:three_prime_UTR 40.0%
!! TTGGATGGAGGATTTTGGAG+GGG - chr7_3:1318895-1318914 None:intergenic 45.0%
! GTTTGGATGGAGGATTTTGG+AGG - chr7_3:1318897-1318916 None:intergenic 45.0%
! CTAAGGGTATGTTTGGATGG+AGG - chr7_3:1318907-1318926 None:intergenic 45.0%
!! GAGAGCTTTTGGCTACTAGA+AGG - chr7_3:1319323-1319342 None:intergenic 45.0%
!!! CCCCATCTTTTTTAGCTCCT+CGG - chr7_3:1319415-1319434 None:intergenic 45.0%
CCGAGGAGCTAAAAAAGATG+GGG + chr7_3:1319412-1319431 Msa1088250:CDS 45.0%
CTGACAAATGCATCCTGTGT+CGG - chr7_3:1319503-1319522 None:intergenic 45.0%
ACAGGATGCATTTGTCAGGA+AGG + chr7_3:1319505-1319524 Msa1088250:CDS 45.0%
TGCATTTGTCAGGAAGGCTA+AGG + chr7_3:1319511-1319530 Msa1088250:CDS 45.0%
! TGTCAGGAAGGCTAAGGTTT+TGG + chr7_3:1319517-1319536 Msa1088250:CDS 45.0%
! TTGGCATTGCAGGTGTTTTC+TGG + chr7_3:1319536-1319555 Msa1088250:intron 45.0%
GGTCCACACGAATCTACAAA+AGG - chr7_3:1319712-1319731 None:intergenic 45.0%
AGACACTCAGAACTCAACGT+TGG + chr7_3:1319772-1319791 Msa1088250:CDS 45.0%
!! GAGCCAGACTTGCTTTTATC+TGG - chr7_3:1319809-1319828 None:intergenic 45.0%
! ATTATTAAGGGGTGTGGCCA+AGG + chr7_3:1320392-1320411 Msa1088250:intron 45.0%
CTATAAGGCCCACAAAACCT+TGG - chr7_3:1320412-1320431 None:intergenic 45.0%
CCTCACCGCCTAATATGTAT+TGG - chr7_3:1320484-1320503 None:intergenic 45.0%
CCAATACATATTAGGCGGTG+AGG + chr7_3:1320481-1320500 Msa1088250:intron 45.0%
!! TTCCTTGGCTGTTTTCGTGA+TGG + chr7_3:1320643-1320662 Msa1088250:CDS 45.0%
TTCCATCACGAAAACAGCCA+AGG - chr7_3:1320648-1320667 None:intergenic 45.0%
AGGTGATAATCAGAAGCGAC+TGG + chr7_3:1321049-1321068 Msa1088250:CDS 45.0%
TAATCAGAAGCGACTGGAGA+AGG + chr7_3:1321055-1321074 Msa1088250:CDS 45.0%
CATGGAACAAAAGCAGACAC+AGG + chr7_3:1321222-1321241 Msa1088250:CDS 45.0%
! TGCCTGGTTTAATTTCACCC+TGG - chr7_3:1321334-1321353 None:intergenic 45.0%
ATGTCAACTCACCGTTACAG+AGG - chr7_3:1321456-1321475 None:intergenic 45.0%
AGAAATTGCATGAGAAGGGG+TGG - chr7_3:1321697-1321716 None:intergenic 45.0%
AGCAAGGAGTTGTGGATTTG+GGG - chr7_3:1321859-1321878 None:intergenic 45.0%
CTAGCAAGGAGTTGTGGATT+TGG - chr7_3:1321861-1321880 None:intergenic 45.0%
GAAGGGCTCATTGTTTGTGA+TGG - chr7_3:1321897-1321916 None:intergenic 45.0%
AATGGGTGGAATCCAGAAAC+AGG - chr7_3:1321954-1321973 None:intergenic 45.0%
! TGTAAGATTTGTGTCGGTGG+TGG - chr7_3:1322008-1322027 None:intergenic 45.0%
TGCTGTAAGATTTGTGTCGG+TGG - chr7_3:1322011-1322030 None:intergenic 45.0%
TTAAGCCAACCAACACCAAC+TGG + chr7_3:1322149-1322168 Msa1088250:CDS 45.0%
ATATTGCCGTGAGGGGTTAA+TGG - chr7_3:1322248-1322267 None:intergenic 45.0%
ATTAACCCCTCACGGCAATA+TGG + chr7_3:1322247-1322266 Msa1088250:CDS 45.0%
TTAACCCCTCACGGCAATAT+GGG + chr7_3:1322248-1322267 Msa1088250:CDS 45.0%
GAATGAACAGTTCCTGGCAT+TGG - chr7_3:1322440-1322459 None:intergenic 45.0%
CCAGTTGAATGAACAGTTCC+TGG - chr7_3:1322446-1322465 None:intergenic 45.0%
CCAGGAACTGTTCATTCAAC+TGG + chr7_3:1322443-1322462 Msa1088250:CDS 45.0%
CTTGGCGAAGGAAATGAAAC+AGG - chr7_3:1322485-1322504 None:intergenic 45.0%
GATTGCTGAGCTAATGGAAG+TGG - chr7_3:1322518-1322537 None:intergenic 45.0%
CTTCCATTAGCTCAGCAATC+AGG + chr7_3:1322518-1322537 Msa1088250:CDS 45.0%
! TTTTACGTGGGCGTATTGAG+AGG - chr7_3:1322558-1322577 None:intergenic 45.0%
ATACGCCCACGTAAAACCAT+TGG + chr7_3:1322562-1322581 Msa1088250:CDS 45.0%
GTAGCTTGACTGTTTGGTCT+GGG - chr7_3:1322662-1322681 None:intergenic 45.0%
AGTAGCTTGACTGTTTGGTC+TGG - chr7_3:1322663-1322682 None:intergenic 45.0%
TCAGGCACAGCAAACCTAAA+TGG - chr7_3:1322731-1322750 None:intergenic 45.0%
!! AAGCTTTGAAGAGGCTGATC+AGG - chr7_3:1322749-1322768 None:intergenic 45.0%
! TATGGAAATGCAGGGTGTCT+GGG - chr7_3:1322866-1322885 None:intergenic 45.0%
! ATATGGAAATGCAGGGTGTC+TGG - chr7_3:1322867-1322886 None:intergenic 45.0%
GACCAGCATATGGAAATGCA+GGG - chr7_3:1322874-1322893 None:intergenic 45.0%
TGACCAGCATATGGAAATGC+AGG - chr7_3:1322875-1322894 None:intergenic 45.0%
AAGTCCCACAAATGGGTATG+AGG + chr7_3:1322912-1322931 Msa1088250:CDS 45.0%
! AAGTTTTGCATTTGAGGGGC+AGG - chr7_3:1322947-1322966 None:intergenic 45.0%
TGCCCCTCAAATGCAAAACT+TGG + chr7_3:1322946-1322965 Msa1088250:CDS 45.0%
! GGCCAAGTTTTGCATTTGAG+GGG - chr7_3:1322951-1322970 None:intergenic 45.0%
! CTGGCCAAGTTTTGCATTTG+AGG - chr7_3:1322953-1322972 None:intergenic 45.0%
TGCATACCTCTTTGGACATC+AGG - chr7_3:1322977-1322996 None:intergenic 45.0%
GTCGATTGTGCATACCTCTT+TGG - chr7_3:1322985-1323004 None:intergenic 45.0%
GTTTAGCAACAATCCCTCCT+TGG + chr7_3:1323045-1323064 Msa1088250:CDS 45.0%
TGAGCTACGTCAGACCACTA+CGG + chr7_3:1318337-1318356 Msa1088250:five_prime_UTR 50.0%
CCGATGAAGGAAGCAGAGAT+CGG - chr7_3:1318399-1318418 None:intergenic 50.0%
CCGATCTCTGCTTCCTTCAT+CGG + chr7_3:1318396-1318415 Msa1088250:five_prime_UTR 50.0%
!! GAGAGAGAGAGTACCGATGA+AGG - chr7_3:1318412-1318431 None:intergenic 50.0%
!! ATGGAGGATTTTGGAGGGGA+GGG - chr7_3:1318891-1318910 None:intergenic 50.0%
TCTGCACCACACAAGATGTC+TGG + chr7_3:1319281-1319300 Msa1088250:exon 50.0%
GTAGCTCCAGACATCTTGTG+TGG - chr7_3:1319290-1319309 None:intergenic 50.0%
AATGCATCCTGTGTCGGATC+AGG - chr7_3:1319497-1319516 None:intergenic 50.0%
CGACACAGGATGCATTTGTC+AGG + chr7_3:1319501-1319520 Msa1088250:CDS 50.0%
!! GGCTAAGGTTTTGGCATTGC+AGG + chr7_3:1319526-1319545 Msa1088250:CDS 50.0%
!! CGCATGAGTTCTGGTTTCCA+AGG + chr7_3:1319658-1319677 Msa1088250:intron 50.0%
CACTCAGAACTCAACGTTGG+TGG + chr7_3:1319775-1319794 Msa1088250:CDS 50.0%
CTCGAAAAGCGGGAAGCAAT+AGG + chr7_3:1319964-1319983 Msa1088250:CDS 50.0%
! GTGATGGAAAATGCTGTCGG+AGG + chr7_3:1320659-1320678 Msa1088250:CDS 50.0%
!! TGCATTTGTGTACTGGCTGC+AGG - chr7_3:1321750-1321769 None:intergenic 50.0%
GCAGCCAGTACACAAATGCA+AGG + chr7_3:1321750-1321769 Msa1088250:CDS 50.0%
GCAAGGAGTTGTGGATTTGG+GGG - chr7_3:1321858-1321877 None:intergenic 50.0%
! GAAAATGGGGTGCTCTAGCA+AGG - chr7_3:1321875-1321894 None:intergenic 50.0%
TGGAATCCAGAAACAGGTGG+AGG - chr7_3:1321948-1321967 None:intergenic 50.0%
!! GTTGTCCAGTTGGTGTTGGT+TGG - chr7_3:1322157-1322176 None:intergenic 50.0%
! TGGAGTTGTCCAGTTGGTGT+TGG - chr7_3:1322161-1322180 None:intergenic 50.0%
! GATGTCTGGAGTTGTCCAGT+TGG - chr7_3:1322167-1322186 None:intergenic 50.0%
GCGTTGAAGAGACTGATGTC+TGG - chr7_3:1322181-1322200 None:intergenic 50.0%
TCAACGCCTCAACCTTTGTC+TGG + chr7_3:1322194-1322213 Msa1088250:CDS 50.0%
GACGGCGATATACCAGACAA+AGG - chr7_3:1322209-1322228 None:intergenic 50.0%
! GGCTGGTTAGCTATTGGTGA+CGG - chr7_3:1322227-1322246 None:intergenic 50.0%
AACCAGCCATTAACCCCTCA+CGG + chr7_3:1322239-1322258 Msa1088250:CDS 50.0%
TAACCCCTCACGGCAATATG+GGG + chr7_3:1322249-1322268 Msa1088250:CDS 50.0%
! AGAGAAACGGGTCTTGTAGG+GGG - chr7_3:1322296-1322315 None:intergenic 50.0%
! GAGAGAAACGGGTCTTGTAG+GGG - chr7_3:1322297-1322316 None:intergenic 50.0%
! CGAGAGAAACGGGTCTTGTA+GGG - chr7_3:1322298-1322317 None:intergenic 50.0%
CCTACAAGACCCGTTTCTCT+CGG + chr7_3:1322296-1322315 Msa1088250:CDS 50.0%
TGGTTGTGGACCGAGAGAAA+CGG - chr7_3:1322309-1322328 None:intergenic 50.0%
AGCAACATATTTGGCTGGGG+TGG - chr7_3:1322347-1322366 None:intergenic 50.0%
!! ATGTTGCTGATTCCACGACC+TGG + chr7_3:1322359-1322378 Msa1088250:CDS 50.0%
GGATGAATACTACCAGGTCG+TGG - chr7_3:1322374-1322393 None:intergenic 50.0%
GGTGACATTCCTGCATGATG+TGG - chr7_3:1322395-1322414 None:intergenic 50.0%
ACCTAGACCACCATCGTCTT+TGG + chr7_3:1322412-1322431 Msa1088250:CDS 50.0%
CCTAGACCACCATCGTCTTT+GGG + chr7_3:1322413-1322432 Msa1088250:CDS 50.0%
ATTGGTCCCAAAGACGATGG+TGG - chr7_3:1322422-1322441 None:intergenic 50.0%
GGAAGTGGAGCGGATATTCT+TGG - chr7_3:1322503-1322522 None:intergenic 50.0%
CTGAGCTAATGGAAGTGGAG+CGG - chr7_3:1322513-1322532 None:intergenic 50.0%
GCGTATTGAGAGGCAGAAGT+AGG - chr7_3:1322548-1322567 None:intergenic 50.0%
!! GGAGGCCAATGGTTTTACGT+GGG - chr7_3:1322570-1322589 None:intergenic 50.0%
!! TGGAGGCCAATGGTTTTACG+TGG - chr7_3:1322571-1322590 None:intergenic 50.0%
! TTTGAAGGCATGGAGGCCAA+TGG - chr7_3:1322581-1322600 None:intergenic 50.0%
GGCCTCCATGCCTTCAAATT+CGG + chr7_3:1322583-1322602 Msa1088250:CDS 50.0%
GCCTCCATGCCTTCAAATTC+GGG + chr7_3:1322584-1322603 Msa1088250:CDS 50.0%
! TCCCGAATTTGAAGGCATGG+AGG - chr7_3:1322588-1322607 None:intergenic 50.0%
AGTCAAGCTACTACTCAGGG+TGG + chr7_3:1322671-1322690 Msa1088250:CDS 50.0%
! GGTACACAAGAGCCACCTTT+TGG + chr7_3:1322692-1322711 Msa1088250:CDS 50.0%
GGCACAGCAAACCTAAATGG+CGG - chr7_3:1322728-1322747 None:intergenic 50.0%
TTCAGATGGATCCAGCTGGT+TGG - chr7_3:1322789-1322808 None:intergenic 50.0%
AAGCTTCAGATGGATCCAGC+TGG - chr7_3:1322793-1322812 None:intergenic 50.0%
GCAGAGACGTAAGCTTCAGA+TGG - chr7_3:1322803-1322822 None:intergenic 50.0%
! TACGTCTCTGCTGCTCCTTT+TGG + chr7_3:1322812-1322831 Msa1088250:CDS 50.0%
! ACGTCTCTGCTGCTCCTTTT+GGG + chr7_3:1322813-1322832 Msa1088250:CDS 50.0%
GAACCTGAACTTCCCCCAAA+AGG - chr7_3:1322830-1322849 None:intergenic 50.0%
CACCCTGCATTTCCATATGC+TGG + chr7_3:1322869-1322888 Msa1088250:CDS 50.0%
ACCTCTTTGGACATCAGGAC+TGG - chr7_3:1322972-1322991 None:intergenic 50.0%
TCGACAAAGCTATCCTGCTC+AGG + chr7_3:1323000-1323019 Msa1088250:CDS 50.0%
CGACAAAGCTATCCTGCTCA+GGG + chr7_3:1323001-1323020 Msa1088250:CDS 50.0%
ATTTGGTCTGCAGGATGTGC+TGG - chr7_3:1323082-1323101 None:intergenic 50.0%
! TGTGGAGGTGCAACAGATGT+AGG - chr7_3:1323121-1323140 None:intergenic 50.0%
!! TGGAGGATTTTGGAGGGGAG+GGG - chr7_3:1318890-1318909 None:intergenic 55.0%
!! GATGGAGGATTTTGGAGGGG+AGG - chr7_3:1318892-1318911 None:intergenic 55.0%
CCAGGTGGAGGCTTGTAACT+GGG - chr7_3:1320106-1320125 None:intergenic 55.0%
ACCAGGTGGAGGCTTGTAAC+TGG - chr7_3:1320107-1320126 None:intergenic 55.0%
!! GGGTGTGGCCAAGGTTTTGT+GGG + chr7_3:1320401-1320420 Msa1088250:intron 55.0%
! GCATCTCTTGGTAACCGCAC+TGG - chr7_3:1321364-1321383 None:intergenic 55.0%
!! ATTCAGGGGCATTCAGCTGC+TGG + chr7_3:1321609-1321628 Msa1088250:intron 55.0%
! CTGCAGGTTGAAACACAGCC+TGG - chr7_3:1321734-1321753 None:intergenic 55.0%
GGTGCTCTAGCAAGGAGTTG+TGG - chr7_3:1321867-1321886 None:intergenic 55.0%
GCTCAACCTCCACCTGTTTC+TGG + chr7_3:1321939-1321958 Msa1088250:CDS 55.0%
GGGTGGAATCCAGAAACAGG+TGG - chr7_3:1321951-1321970 None:intergenic 55.0%
GGTGGCCCAACTTGACCAAA+AGG - chr7_3:1322056-1322075 None:intergenic 55.0%
TCAGCCCCATATTGCCGTGA+GGG - chr7_3:1322256-1322275 None:intergenic 55.0%
ATCAGCCCCATATTGCCGTG+AGG - chr7_3:1322257-1322276 None:intergenic 55.0%
TCACGGCAATATGGGGCTGA+TGG + chr7_3:1322256-1322275 Msa1088250:CDS 55.0%
! CCGAGAGAAACGGGTCTTGT+AGG - chr7_3:1322299-1322318 None:intergenic 55.0%
GGTTGTGGACCGAGAGAAAC+GGG - chr7_3:1322308-1322327 None:intergenic 55.0%
! CCCAAAGACGATGGTGGTCT+AGG - chr7_3:1322416-1322435 None:intergenic 55.0%
!! GGCATTGGTCCCAAAGACGA+TGG - chr7_3:1322425-1322444 None:intergenic 55.0%
!! TCGTCTTTGGGACCAATGCC+AGG + chr7_3:1322425-1322444 Msa1088250:CDS 55.0%
GGAGCGGATATTCTTGGCGA+AGG - chr7_3:1322497-1322516 None:intergenic 55.0%
ATTGGGCCGCTGTCCTTGAA+AGG - chr7_3:1322618-1322637 None:intergenic 55.0%
GACACAAGTCTCCAACCAGC+TGG + chr7_3:1322775-1322794 Msa1088250:CDS 55.0%
! CGTCTCTGCTGCTCCTTTTG+GGG + chr7_3:1322814-1322833 Msa1088250:CDS 55.0%
! GTCTCTGCTGCTCCTTTTGG+GGG + chr7_3:1322815-1322834 Msa1088250:CDS 55.0%
!! GCTCCTTTTGGGGGAAGTTC+AGG + chr7_3:1322824-1322843 Msa1088250:CDS 55.0%
! GGTGCAGGTTGACCAGCATA+TGG - chr7_3:1322884-1322903 None:intergenic 55.0%
! GGGACTTGAGATCTTGGTGC+AGG - chr7_3:1322899-1322918 None:intergenic 55.0%
GCCAGTCCTGATGTCCAAAG+AGG + chr7_3:1322968-1322987 Msa1088250:CDS 55.0%
AACAATCCCTCCTTGGCGTC+CGG + chr7_3:1323052-1323071 Msa1088250:CDS 55.0%
!! TGCAGGATGTGCTGGCTTAC+CGG - chr7_3:1323074-1323093 None:intergenic 55.0%
! GGATTACCTTTCGGGTGTGG+AGG - chr7_3:1323136-1323155 None:intergenic 55.0%
! CCAGGATTACCTTTCGGGTG+TGG - chr7_3:1323139-1323158 None:intergenic 55.0%
CCACACCCGAAAGGTAATCC+TGG + chr7_3:1323136-1323155 Msa1088250:CDS 55.0%
GCTACGTCAGACCACTACGG+TGG + chr7_3:1318340-1318359 Msa1088250:five_prime_UTR 60.0%
!! GGATTTTGGAGGGGAGGGGA+GGG - chr7_3:1318886-1318905 None:intergenic 60.0%
!! AGGATTTTGGAGGGGAGGGG+AGG - chr7_3:1318887-1318906 None:intergenic 60.0%
ATGGGGACCTGATCCGACAC+AGG + chr7_3:1319487-1319506 Msa1088250:CDS 60.0%
CCCAGTTACAAGCCTCCACC+TGG + chr7_3:1320103-1320122 Msa1088250:CDS 60.0%
! GGGGTGTGGCCAAGGTTTTG+TGG + chr7_3:1320400-1320419 Msa1088250:intron 60.0%
!! CCAGGCACTGATGTCCAGTG+CGG + chr7_3:1321347-1321366 Msa1088250:CDS 60.0%
TGCCGTGAGGGGTTAATGGC+TGG - chr7_3:1322244-1322263 None:intergenic 60.0%
CAGCCCCATATTGCCGTGAG+GGG - chr7_3:1322255-1322274 None:intergenic 60.0%
TATGGGGCTGATGGCTCCAC+CGG + chr7_3:1322265-1322284 Msa1088250:CDS 60.0%
! GGTCTTGTAGGGGGAACTGC+CGG - chr7_3:1322287-1322306 None:intergenic 60.0%
AACCTAAATGGCGGCGTGCG+CGG - chr7_3:1322719-1322738 None:intergenic 60.0%
! GGAAATGCAGGGTGTCTGGG+TGG - chr7_3:1322863-1322882 None:intergenic 60.0%
GCTATCCTGCTCAGGGAGCA+TGG + chr7_3:1323008-1323027 Msa1088250:CDS 60.0%
GTTGCACCTCCACACCCGAA+AGG + chr7_3:1323127-1323146 Msa1088250:CDS 60.0%
AGTGCGCGTAGCCACCGTAG+TGG - chr7_3:1318354-1318373 None:intergenic 65.0%
CCGCACTGGACATCAGTGCC+TGG - chr7_3:1321350-1321369 None:intergenic 65.0%
CTTGTAGGGGGAACTGCCGG+TGG - chr7_3:1322284-1322303 None:intergenic 65.0%
AGAGGCCATGCTCCCTGAGC+AGG - chr7_3:1323016-1323035 None:intergenic 65.0%
GGCTTACCGGACGCCAAGGA+GGG - chr7_3:1323061-1323080 None:intergenic 65.0%
TGGCTTACCGGACGCCAAGG+AGG - chr7_3:1323062-1323081 None:intergenic 65.0%
!! TGCTGGCTTACCGGACGCCA+AGG - chr7_3:1323065-1323084 None:intergenic 65.0%
GGCGTGCGCGGACCAAAAGG+TGG - chr7_3:1322707-1322726 None:intergenic 70.0%
GTCCGCGCACGCCGCCATTT+AGG + chr7_3:1322714-1322733 Msa1088250:CDS 70.0%
GGCGGCGTGCGCGGACCAAA+AGG - chr7_3:1322710-1322729 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 1318313 1323531 1318313 ID=Msa1088250;Name=Msa1088250
chr7_3 mRNA 1318313 1323531 1318313 ID=Msa1088250-mRNA-1;Parent=Msa1088250;Name=Msa1088250-mRNA-1;_AED=0.12;_eAED=0.12;_QI=165|0.88|0.9|1|0.88|0.8|10|366|805
chr7_3 exon 1318313 1318417 1318313 ID=Msa1088250-mRNA-1:exon:522;Parent=Msa1088250-mRNA-1
chr7_3 exon 1319236 1319547 1319236 ID=Msa1088250-mRNA-1:exon:523;Parent=Msa1088250-mRNA-1
chr7_3 exon 1319719 1319844 1319719 ID=Msa1088250-mRNA-1:exon:524;Parent=Msa1088250-mRNA-1
chr7_3 exon 1319946 1319985 1319946 ID=Msa1088250-mRNA-1:exon:525;Parent=Msa1088250-mRNA-1
chr7_3 exon 1320083 1320165 1320083 ID=Msa1088250-mRNA-1:exon:526;Parent=Msa1088250-mRNA-1
chr7_3 exon 1320623 1320727 1320623 ID=Msa1088250-mRNA-1:exon:527;Parent=Msa1088250-mRNA-1
chr7_3 exon 1320999 1321076 1320999 ID=Msa1088250-mRNA-1:exon:528;Parent=Msa1088250-mRNA-1
chr7_3 exon 1321198 1321251 1321198 ID=Msa1088250-mRNA-1:exon:529;Parent=Msa1088250-mRNA-1
chr7_3 exon 1321335 1321463 1321335 ID=Msa1088250-mRNA-1:exon:530;Parent=Msa1088250-mRNA-1
chr7_3 exon 1321615 1323531 1321615 ID=Msa1088250-mRNA-1:exon:531;Parent=Msa1088250-mRNA-1
chr7_3 five_prime_UTR 1318313 1318417 1318313 ID=Msa1088250-mRNA-1:five_prime_utr;Parent=Msa1088250-mRNA-1
chr7_3 five_prime_UTR 1319236 1319295 1319236 ID=Msa1088250-mRNA-1:five_prime_utr;Parent=Msa1088250-mRNA-1
chr7_3 CDS 1319296 1319547 1319296 ID=Msa1088250-mRNA-1:cds;Parent=Msa1088250-mRNA-1
chr7_3 CDS 1319719 1319844 1319719 ID=Msa1088250-mRNA-1:cds;Parent=Msa1088250-mRNA-1
chr7_3 CDS 1319946 1319985 1319946 ID=Msa1088250-mRNA-1:cds;Parent=Msa1088250-mRNA-1
chr7_3 CDS 1320083 1320165 1320083 ID=Msa1088250-mRNA-1:cds;Parent=Msa1088250-mRNA-1
chr7_3 CDS 1320623 1320727 1320623 ID=Msa1088250-mRNA-1:cds;Parent=Msa1088250-mRNA-1
chr7_3 CDS 1320999 1321076 1320999 ID=Msa1088250-mRNA-1:cds;Parent=Msa1088250-mRNA-1
chr7_3 CDS 1321198 1321251 1321198 ID=Msa1088250-mRNA-1:cds;Parent=Msa1088250-mRNA-1
chr7_3 CDS 1321335 1321463 1321335 ID=Msa1088250-mRNA-1:cds;Parent=Msa1088250-mRNA-1
chr7_3 CDS 1321615 1323165 1321615 ID=Msa1088250-mRNA-1:cds;Parent=Msa1088250-mRNA-1
chr7_3 three_prime_UTR 1323166 1323531 1323166 ID=Msa1088250-mRNA-1:three_prime_utr;Parent=Msa1088250-mRNA-1
Gene Sequence

>Msa1088250

ATGTCTGGAGCTACATCTACAACACCTTCTAGTAGCCAAAAGCTCTCTAAATTTGGTGCCAAATCTGGATTTGTTATCCCCAAAAACAAGTTATTAGGATCATTAGTCCCTATTATCCGAGGAGCTAAAAAAGATGGGGTTACTGGAGTTGTCAATGAAGAAAGTTCAAAACAAATTGAGAGGAAATCAAGATGGGGACCTGATCCGACACAGGATGCATTTGTCAGGAAGGCTAAGGTTTTGGCATTGCAGATTCGTGTGGACCAAATTTCAAAGTTGTTGGAATCAGAAAATCCAGAGATTAGAGACACTCAGAACTCAACGTTGGTGGATGAGAACCCAGATAAAAGCAAGTCTGGCTCTCAAATTAATAGCAAGAAGTCAGAAATGCTAGAACTCGAAAAGCGGGAAGCAATAGGTGAAATACTAAAATTAGATCCCAGTTACAAGCCTCCACCTGGTTTTAAACCATTGTTAAAAGAAGACAATGTTCCTTTGCCTAAATGTTCTTCTCATCCATTTTCCTTGGCTGTTTTCGTGATGGAAAATGCTGTCGGAGGTCCTCATATTCTTGAAAGAATGTTGAAAACTAAGTTGCAGTATAAGGTCCAAGAATATCCTGGGTACAAATTTGTTGGTCTTATTTATGGGACTGAAGGTGATAATCAGAAGCGACTGGAGAAGGAAACTGGTACCAAGATAAAAATTCATGGAACAAAAGCAGACACAGGAGAGAAAGGTGAAATTAAACCAGGCACTGATGTCCAGTGCGGTTACCAAGAGATGCATGTCAACATATCAGCTGATAGTTTTGATAAAGTGGATGCAGCAATTTCCATCATTGAACTACTAATTTCCTCTGTAACGGGGCATTCAGCTGCTGGTTCCACACCTTCTGTATCTGTTTCTGGAGACACAACTAATGTTTTGAATCAAAACGAAGACACCACCCCTTCTCATGCAATTTCTCTTTCTCTTGAAAACCAGGCTGTGTTTCAACCTGCAGCCAGTACACAAATGCAAGGAGATCACTTTCAATACTCTGGTTCATGGTTTTCACCCTTACCATCTCATACCCCTTTATTTGCTTCTTCTGGCAGTGTAGTTCCCCCAAATCCACAACTCCTTGCTAGAGCACCCCATTTTCCATCACAAACAATGAGCCCTTCAAGTCTGATTTCAGCTTTTGGTGCTCAACCTCCACCTGTTTCTGGATTCCACCCATTTATTCCAAATCAGCAGTTTTCTATGCAAGCACCACCACCGACACAAATCTTACAGCACTCACAATGGCCTCAAACAAATCCTTTTGGTCAAGTTGGGCCACCAAGAAATCCTTCTGTAATAAGTGCACATAATTTGTCAGCACCAACAAATGCTTCACTTTCATTTCCAGTTTCTTTAAGCCAACCAACACCAACTGGACAACTCCAGACATCAGTCTCTTCAACGCCTCAACCTTTGTCTGGTATATCGCCGTCACCAATAGCTAACCAGCCATTAACCCCTCACGGCAATATGGGGCTGATGGCTCCACCGGCAGTTCCCCCTACAAGACCCGTTTCTCTCGGTCCACAACCAGATGTTGAATATAAGCCACCCCAGCCAAATATGTTGCTGATTCCACGACCTGGTAGTATTCATCCACATCATGCAGGAATGTCACCTAGACCACCATCGTCTTTGGGACCAATGCCAGGAACTGTTCATTCAACTGGAAACCATTTATTAGGACCTGTTTCATTTCCTTCGCCAAGAATATCCGCTCCACTTCCATTAGCTCAGCAATCAGGAATACCTACTTCTGCCTCTCAATACGCCCACGTAAAACCATTGGCCTCCATGCCTTCAAATTCGGGAAATTTTACCTTTCAAGGACAGCGGCCCAATGCAGACTACTATCAAGTGGTTCCCAGACCAAACAGTCAAGCTACTACTCAGGGTGGTACACAAGAGCCACCTTTTGGTCCGCGCACGCCGCCATTTAGGTTTGCTGTGCCTGATCAGCCTCTTCAAAGCTTTCAAAGGACACAAGTCTCCAACCAGCTGGATCCATCTGAAGCTTACGTCTCTGCTGCTCCTTTTGGGGGAAGTTCAGGTTCTGTCTCATTTCCACCCAGACACCCTGCATTTCCATATGCTGGTCAACCTGCACCAAGATCTCAAGTCCCACAAATGGGTATGAGGAACTTCATTCCTGCCCCTCAAATGCAAAACTTGGCCAGTCCTGATGTCCAAAGAGGTATGCACAATCGACAAAGCTATCCTGCTCAGGGAGCATGGCCTCTGAATCAGAAGTTTAGCAACAATCCCTCCTTGGCGTCCGGTAAGCCAGCACATCCTGCAGACCAAATTTATGATCCATTTTCACCTACATCTGTTGCACCTCCACACCCGAAAGGTAATCCTGGAAAATGA
Protein sequence

>Msa1088250

MSGATSTTPSSSQKLSKFGAKSGFVIPKNKLLGSLVPIIRGAKKDGVTGVVNEESSKQIERKSRWGPDPTQDAFVRKAKVLALQIRVDQISKLLESENPEIRDTQNSTLVDENPDKSKSGSQINSKKSEMLELEKREAIGEILKLDPSYKPPPGFKPLLKEDNVPLPKCSSHPFSLAVFVMENAVGGPHILERMLKTKLQYKVQEYPGYKFVGLIYGTEGDNQKRLEKETGTKIKIHGTKADTGEKGEIKPGTDVQCGYQEMHVNISADSFDKVDAAISIIELLISSVTGHSAAGSTPSVSVSGDTTNVLNQNEDTTPSHAISLSLENQAVFQPAASTQMQGDHFQYSGSWFSPLPSHTPLFASSGSVVPPNPQLLARAPHFPSQTMSPSSLISAFGAQPPPVSGFHPFIPNQQFSMQAPPPTQILQHSQWPQTNPFGQVGPPRNPSVISAHNLSAPTNASLSFPVSLSQPTPTGQLQTSVSSTPQPLSGISPSPIANQPLTPHGNMGLMAPPAVPPTRPVSLGPQPDVEYKPPQPNMLLIPRPGSIHPHHAGMSPRPPSSLGPMPGTVHSTGNHLLGPVSFPSPRISAPLPLAQQSGIPTSASQYAHVKPLASMPSNSGNFTFQGQRPNADYYQVVPRPNSQATTQGGTQEPPFGPRTPPFRFAVPDQPLQSFQRTQVSNQLDPSEAYVSAAPFGGSSGSVSFPPRHPAFPYAGQPAPRSQVPQMGMRNFIPAPQMQNLASPDVQRGMHNRQSYPAQGAWPLNQKFSNNPSLASGKPAHPADQIYDPFSPTSVAPPHPKGNPGK*