AlfalfaGEDB | Msa0810030

M. sativa cultivar zhongmu-4 / Msa0810030

KEGG: K19533
GO: GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0000802 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1903046
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0810030	XP_024639642.1	93.778	884	40	2	1	883	1	870	0.0	1617

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0810030	sp\|Q9LME2\|SYCP1_ARATH	49.387	897	414	11	1	883	1	871	0.0	779

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0810030	G7KB78	89.457	920	43	2	1	883	1	903	0.0	1589

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017390	Msa0810030	0.807295	5.420809e-50	-8.615850e-47
Msa0035130	Msa0810030	0.802244	6.149611e-49	-8.615850e-47
Msa0081650	Msa0810030	0.800482	1.412021e-48	-8.615850e-47
Msa0103250	Msa0810030	0.806580	7.678398e-50	-8.615850e-47
Msa0106620	Msa0810030	0.833523	5.078937e-56	-8.615850e-47
Msa0106710	Msa0810030	0.840865	6.719494e-58	-8.615850e-47
Msa0188350	Msa0810030	0.814693	1.352722e-51	-8.615850e-47
Msa0189040	Msa0810030	0.815492	8.990404e-52	-8.615850e-47
Msa0207350	Msa0810030	0.804650	1.950767e-49	-8.615850e-47
Msa0223230	Msa0810030	0.806348	8.591916e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0810030	MtrunA17_Chr5g0426011	91.791	536	20	1	219	730	1	536	0.0	962
Msa0810030	MtrunA17_Chr5g0426021	80.632	253	12	1	1	216	1	253	6.18e-111	340
Msa0810030	MtrunA17_Chr5g0426001	78.378	185	8	2	731	883	2	186	1.31e-94	295

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0810030	AT1G22260.1	49.387	897	414	11	1	883	1	871	779
Msa0810030	AT1G22275.1	48.365	887	423	9	1	883	1	856	763
Msa0810030	AT1G22260.3	48.721	860	400	9	1	830	1	849	719
Msa0810030	AT1G22275.2	48.426	826	406	7	1	823	1	809	702
Msa0810030	AT1G22260.2	48.166	818	391	9	80	883	1	799	695
Msa0810030	AT1G22275.3	48.494	664	335	2	1	664	1	657	558

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Find 130 sgRNAs with CRISPR-Local

Find 419 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAGAGGATGAAAATAG+AGG	0.498263	5_3:-37951004	Msa0810030:CDS
AAAGTGGAGAACGTAAAACC+AGG	0.676173	5_3:-37947269	Msa0810030:CDS
AACAAATCACCGATATTTGA+AGG	0.451394	5_3:+37946263	None:intergenic
AACAAGTACTGTCTTGTTCG+AGG	0.548694	5_3:-37947050	Msa0810030:CDS
AACGTAAAACCAGGAAAAGC+AGG	0.477327	5_3:-37947260	Msa0810030:CDS
AAGCTCAGATTAAAGCATTG+AGG	0.620114	5_3:-37949733	Msa0810030:CDS
AAGGCTATTGCAGCAATTGA+GGG	0.526951	5_3:-37950424	Msa0810030:CDS
AATATCTCAGAGAAATGATC+AGG	0.479619	5_3:-37950672	Msa0810030:intron
AATGGTAGAGAATAAGCAGC+TGG	0.548203	5_3:-37950717	Msa0810030:CDS
AATTCTCAACTTCATATTCA+TGG	0.284847	5_3:+37947104	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATAGATTCAAATCGTTGTA+CGG	-	chr5_3:37946250-37946269	Msa0810030:CDS	30.0%
GAAAACAGATCTTGATATTG+CGG	-	chr5_3:37946515-37946534	Msa0810030:intron	30.0%
TACTAAGCTTAAGAAATCTC+TGG	-	chr5_3:37946676-37946695	Msa0810030:intron	30.0%
GAAGATGAGAAATTATGGAA+AGG	-	chr5_3:37946773-37946792	Msa0810030:intron	30.0%
TGTTATAGCTGAAAAGGATA+AGG	-	chr5_3:37946972-37946991	Msa0810030:intron	30.0%
AGTTTGAATGAACAGATGAA+TGG	-	chr5_3:37947039-37947058	Msa0810030:CDS	30.0%
TGCAAATGTTATAGAAGAGA+AGG	-	chr5_3:37947287-37947306	Msa0810030:CDS	30.0%
GCAAATGTTATAGAAGAGAA+GGG	-	chr5_3:37947288-37947307	Msa0810030:CDS	30.0%
GATGATATAGTGAAACATGA+AGG	-	chr5_3:37947395-37947414	Msa0810030:intron	30.0%
TGTGTTTGGCTAATGAATTT+AGG	-	chr5_3:37947465-37947484	Msa0810030:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	37946211	37954802	37946211	ID=Msa0810030;Name=Msa0810030
chr5_3	mRNA	37946211	37954802	37946211	ID=Msa0810030-mRNA-1;Parent=Msa0810030;Name=Msa0810030-mRNA-1;_AED=0.10;_eAED=0.11;_QI=0\|0.41\|0.16\|1\|1\|1\|18\|0\|883
chr5_3	exon	37954637	37954802	37954637	ID=Msa0810030-mRNA-1:exon:11620;Parent=Msa0810030-mRNA-1
chr5_3	exon	37954477	37954526	37954477	ID=Msa0810030-mRNA-1:exon:11619;Parent=Msa0810030-mRNA-1
chr5_3	exon	37954132	37954339	37954132	ID=Msa0810030-mRNA-1:exon:11618;Parent=Msa0810030-mRNA-1
chr5_3	exon	37953908	37954033	37953908	ID=Msa0810030-mRNA-1:exon:11617;Parent=Msa0810030-mRNA-1
chr5_3	exon	37953704	37953802	37953704	ID=Msa0810030-mRNA-1:exon:11616;Parent=Msa0810030-mRNA-1
chr5_3	exon	37951213	37951889	37951213	ID=Msa0810030-mRNA-1:exon:11615;Parent=Msa0810030-mRNA-1
chr5_3	exon	37950885	37951133	37950885	ID=Msa0810030-mRNA-1:exon:11614;Parent=Msa0810030-mRNA-1
chr5_3	exon	37950673	37950801	37950673	ID=Msa0810030-mRNA-1:exon:11613;Parent=Msa0810030-mRNA-1
chr5_3	exon	37950526	37950594	37950526	ID=Msa0810030-mRNA-1:exon:11612;Parent=Msa0810030-mRNA-1
chr5_3	exon	37950342	37950452	37950342	ID=Msa0810030-mRNA-1:exon:11611;Parent=Msa0810030-mRNA-1
chr5_3	exon	37949885	37949992	37949885	ID=Msa0810030-mRNA-1:exon:11610;Parent=Msa0810030-mRNA-1
chr5_3	exon	37949673	37949783	37949673	ID=Msa0810030-mRNA-1:exon:11609;Parent=Msa0810030-mRNA-1
chr5_3	exon	37949514	37949600	37949514	ID=Msa0810030-mRNA-1:exon:11608;Parent=Msa0810030-mRNA-1
chr5_3	exon	37947433	37947498	37947433	ID=Msa0810030-mRNA-1:exon:11607;Parent=Msa0810030-mRNA-1
chr5_3	exon	37947235	37947342	37947235	ID=Msa0810030-mRNA-1:exon:11606;Parent=Msa0810030-mRNA-1
chr5_3	exon	37947009	37947134	37947009	ID=Msa0810030-mRNA-1:exon:11605;Parent=Msa0810030-mRNA-1
chr5_3	exon	37946856	37946915	37946856	ID=Msa0810030-mRNA-1:exon:11604;Parent=Msa0810030-mRNA-1
chr5_3	exon	37946211	37946312	37946211	ID=Msa0810030-mRNA-1:exon:11603;Parent=Msa0810030-mRNA-1
chr5_3	CDS	37954637	37954802	37954637	ID=Msa0810030-mRNA-1:cds;Parent=Msa0810030-mRNA-1
chr5_3	CDS	37954477	37954526	37954477	ID=Msa0810030-mRNA-1:cds;Parent=Msa0810030-mRNA-1
chr5_3	CDS	37954132	37954339	37954132	ID=Msa0810030-mRNA-1:cds;Parent=Msa0810030-mRNA-1
chr5_3	CDS	37953908	37954033	37953908	ID=Msa0810030-mRNA-1:cds;Parent=Msa0810030-mRNA-1
chr5_3	CDS	37953704	37953802	37953704	ID=Msa0810030-mRNA-1:cds;Parent=Msa0810030-mRNA-1
chr5_3	CDS	37951213	37951889	37951213	ID=Msa0810030-mRNA-1:cds;Parent=Msa0810030-mRNA-1
chr5_3	CDS	37950885	37951133	37950885	ID=Msa0810030-mRNA-1:cds;Parent=Msa0810030-mRNA-1
chr5_3	CDS	37950673	37950801	37950673	ID=Msa0810030-mRNA-1:cds;Parent=Msa0810030-mRNA-1
chr5_3	CDS	37950526	37950594	37950526	ID=Msa0810030-mRNA-1:cds;Parent=Msa0810030-mRNA-1
chr5_3	CDS	37950342	37950452	37950342	ID=Msa0810030-mRNA-1:cds;Parent=Msa0810030-mRNA-1
chr5_3	CDS	37949885	37949992	37949885	ID=Msa0810030-mRNA-1:cds;Parent=Msa0810030-mRNA-1
chr5_3	CDS	37949673	37949783	37949673	ID=Msa0810030-mRNA-1:cds;Parent=Msa0810030-mRNA-1
chr5_3	CDS	37949514	37949600	37949514	ID=Msa0810030-mRNA-1:cds;Parent=Msa0810030-mRNA-1
chr5_3	CDS	37947433	37947498	37947433	ID=Msa0810030-mRNA-1:cds;Parent=Msa0810030-mRNA-1
chr5_3	CDS	37947235	37947342	37947235	ID=Msa0810030-mRNA-1:cds;Parent=Msa0810030-mRNA-1
chr5_3	CDS	37947009	37947134	37947009	ID=Msa0810030-mRNA-1:cds;Parent=Msa0810030-mRNA-1
chr5_3	CDS	37946856	37946915	37946856	ID=Msa0810030-mRNA-1:cds;Parent=Msa0810030-mRNA-1
chr5_3	CDS	37946211	37946312	37946211	ID=Msa0810030-mRNA-1:cds;Parent=Msa0810030-mRNA-1

Gene Sequence

>Msa0810030

ATGCAGAAGCTAGGAGGATTTCCAACCTCGAAGAGCCTCGATAGATTCAAATCGTTGTACGGTTCAGTTTCCGGAACCGCGAAACCGTTATCATCATCGATCTCTGCGCGTCAATCTTCAGATTCCGTTTCATCGGGAAGTTTCGCGAATCTGAAGCTAACCGCAGAGAAATTAGTGAAAGAGCAAGCTTCGGTGAAAACAGATCTTGATATTGCGAATACTAAGCTTAAGAAATCTCTGGAGGATATTCGTGCATTAGAAGAAAAATTGCAGAATGCGTTTAACGAAAACGCGAAGCTTAAGGTGAAGCGGAAGGAAGATGAGAAATTATGGAAAGGACTTGAATCTAAGTTCTCGTCGACTAAGACTTTGTATAATCAGCTTACCGAGACTCTTCAACAGTTGGCTGGTATCGTTCAAGATGCTGAAAAGGATAAGGAAAAATTGGAAAATAAACTCTCTGCAAGTTCAGAAGCTCTTGAGAGTTTGAATGAACAGATGAATGGTTTGTCCTTGAAGCTAGATTCTACAGGGAAAACAATAAGAGCTCGTGATAATGAGCTAGAGAAGCTGAAATTTGCTGCTGAAGAAAGGGAAAAGTTTCACAGTGATGAAAAGTGCAGAGCTGCAAATGTTATAGAAGAGAAGGATACCATGATAAAGAATTTAGAAGACATGTTAACTTCTAGTAGATTGGCTACAGAGAATTTGAACTCAAAGTTGGGAGAGCTTCACCTTAAAATAAAAGTCAAAGATGAAGAAATTACACATCACATAACCAGTGAACAGAGATTGGATAAAGAAAAAAGTGATCTGCAATTGTGCAATGCTGATCTTGCTGAAAAGCTTGGCACGTCACTTCAGAAAATAAACAATCTTGAAGGATCACTTCAGGAGATGGCTGCACATTTATTGAATTTAGACAAAGAAAGCTTGAACCTTGTTAACAAGTTTGATGAAATGAACTCTCTCTATACTTCTTGCTTCAACTTGGTCCAGCACGAAAGAGACACTTTCTCGAAGCATGCTCAAAACCAGTATGATGTGCTTCATGCTAAGTTCTTGGTATTGTCATCAGAAAAAGATGAAATTCATATGACGAATCAAGAGTTAAGAAGTAGTTTGAATGATCTTCGTCAAGTCCAAGAGTCCACTGTAGCACAGTATACAGAGAATTGTCGATTAGCTGCTGAGAGAATTCAGCATTTGGAGTCAGAAGCTGAAGCTTTAATCTCAAAGAAGGCAGAAGCAGAAGTCACAATTTCCAAATTAGAGGAGAAAGCTGAAATTCTGTTAGGAAGTGTTAGATCATCGGAGAACCAAATGCAAGGTCTACTGCTCAAAATTTCAGCTCTAGAGGCTGAAAGCAAAGAAAATATGGAAAGAATGCAGGCAGACATATTGAAGAAATCAGAGGAAATTGATACTCTGCAAAAGGAGAGGATGAAAATAGAGGAGAATGCAGACTCTCTTGACAATGAAGTCCTACAGCTTCGAAACGTCTTAGAGGAAAAAGAACAATGCATTTTGCAGCATAAAGAACAGGAAAAGAAGCTGGAAGATCAGATCACAGAGAATCGGTCATTATTAACTGCTGCTGAAAGTAAACTTGCAGAAGCTAGAAATCAATACGATCAAATGGTAGAGAATAAGCAGCTGGAATTGTCAAAGCATTTAAAAGAAATATCTCAGAGAAATGATCAGGCTATTAATGACATTAAAAGGAAGTATGAATTAGAGAAGATGGAGATTGTCAAATTGGAAAAAGACAAGGCTGACAAGGCTATTGCAGCAATTGAGGGAAGGTGTGACCAAAAACTTGCAGAGTGCAAAGAAGAATCAAGGAAGCAGTTGATGCACATTCAGGAGGAACACGCTAAGCTGGTTACTCATATGCAGCAGGAACATGATAAGAGGCAACTATGCCTGCAAGCTGAACACAGTGAAAAGTTAAAGCGTGCTCAACTGCAAGCTGAAAATGAACTGAGAGAGAAAACAATGTTTATGAGGAATGACCATGAAGCTCAGATTAAAGCATTGAGGTGTGAACTTGAAGATGAGTGTAGGAAGCTAGAAGAGGAGTTGCATCTCCAGAAATCCAAAGAAGAAAGGCAAAAGGCTTTGCTGCAGTTGCAATGGAATGTGATGAGTGACAAGCCAAAAGAGGACCCAGAAGTTAATTCAAAACAGGAATACCCCGTTTCATCGATTAAAAGAAGGAGTTCTTTTGGTGGCAAAAGGAGTCAGCATGAAATAGAATCTCCTTACTGTGAAGAAATAGAAGCACCGGTGCCGAAGTTGTTGAAGAAAGTGGAGAACGTAAAACCAGGAAAAGCAGGAGGCATTCCTAAGCATCATAGAAAGGTAACTCGCCATGAATATGAAGTTGAGAATTCTAATGGAAGAACAATTACAAAGAAAAGGAAAACAAGTACTGTCTTGTTCGAGGCATGTATCTGTTTCTCTCTAAATGCAATCAATCCTATAGATGATCCAAGAAAACAAAAGATAAATACACCAAAAACAAATACCCCTAGAACTGTTGTTAAGAGTCAGAGGGTTGAAAACCATCCTCGTCCTTCAAATATCGGTGATTTGTTTTCAGAAGGGTCTCTAAATCCATATGCAGATGATCCCTATTCATTTGATTAG

Protein sequence

>Msa0810030

MQKLGGFPTSKSLDRFKSLYGSVSGTAKPLSSSISARQSSDSVSSGSFANLKLTAEKLVKEQASVKTDLDIANTKLKKSLEDIRALEEKLQNAFNENAKLKVKRKEDEKLWKGLESKFSSTKTLYNQLTETLQQLAGIVQDAEKDKEKLENKLSASSEALESLNEQMNGLSLKLDSTGKTIRARDNELEKLKFAAEEREKFHSDEKCRAANVIEEKDTMIKNLEDMLTSSRLATENLNSKLGELHLKIKVKDEEITHHITSEQRLDKEKSDLQLCNADLAEKLGTSLQKINNLEGSLQEMAAHLLNLDKESLNLVNKFDEMNSLYTSCFNLVQHERDTFSKHAQNQYDVLHAKFLVLSSEKDEIHMTNQELRSSLNDLRQVQESTVAQYTENCRLAAERIQHLESEAEALISKKAEAEVTISKLEEKAEILLGSVRSSENQMQGLLLKISALEAESKENMERMQADILKKSEEIDTLQKERMKIEENADSLDNEVLQLRNVLEEKEQCILQHKEQEKKLEDQITENRSLLTAAESKLAEARNQYDQMVENKQLELSKHLKEISQRNDQAINDIKRKYELEKMEIVKLEKDKADKAIAAIEGRCDQKLAECKEESRKQLMHIQEEHAKLVTHMQQEHDKRQLCLQAEHSEKLKRAQLQAENELREKTMFMRNDHEAQIKALRCELEDECRKLEEELHLQKSKEERQKALLQLQWNVMSDKPKEDPEVNSKQEYPVSSIKRRSSFGGKRSQHEIESPYCEEIEAPVPKLLKKVENVKPGKAGGIPKHHRKVTRHEYEVENSNGRTITKKRKTSTVLFEACICFSLNAINPIDDPRKQKINTPKTNTPRTVVKSQRVENHPRPSNIGDLFSEGSLNPYADDPYSFD*