Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0426760 | XP_013461532.1 | 99.541 | 218 | 1 | 0 | 8 | 225 | 5 | 222 | 6.94e-160 | 451 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0426760 | sp|Q9M5M7|RL10_EUPES | 95.794 | 214 | 9 | 0 | 8 | 221 | 5 | 218 | 5.29e-153 | 426 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0426760 | A0A072V158 | 99.541 | 218 | 1 | 0 | 8 | 225 | 5 | 222 | 3.32e-160 | 451 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0001450 | Msa0426760 | 0.808154 | 3.559891e-50 | -8.615850e-47 |
Msa0020390 | Msa0426760 | 0.814509 | 1.486040e-51 | -8.615850e-47 |
Msa0033880 | Msa0426760 | 0.801248 | 9.846327e-49 | -8.615850e-47 |
Msa0048180 | Msa0426760 | 0.806239 | 9.059069e-50 | -8.615850e-47 |
Msa0075170 | Msa0426760 | 0.805362 | 1.384463e-49 | -8.615850e-47 |
Msa0090520 | Msa0426760 | 0.824524 | 7.703750e-54 | -8.615850e-47 |
Msa0090570 | Msa0426760 | 0.812525 | 4.056994e-51 | -8.615850e-47 |
Msa0091610 | Msa0426760 | 0.820188 | 7.825065e-53 | -8.615850e-47 |
Msa0093010 | Msa0426760 | 0.814402 | 1.569512e-51 | -8.615850e-47 |
Msa0100740 | Msa0426760 | 0.820139 | 8.030426e-53 | -8.615850e-47 |
Msa0128860 | Msa0426760 | 0.817076 | 3.976979e-52 | -8.615850e-47 |
Msa0137990 | Msa0426760 | 0.823605 | 1.266218e-53 | -8.615850e-47 |
Msa0167480 | Msa0426760 | 0.811910 | 5.528371e-51 | -8.615850e-47 |
Msa0174730 | Msa0426760 | 0.819397 | 1.186414e-52 | -8.615850e-47 |
Msa0183850 | Msa0426760 | 0.820700 | 5.972569e-53 | -8.615850e-47 |
Msa0183900 | Msa0426760 | 0.810580 | 1.074123e-50 | -8.615850e-47 |
Msa0188350 | Msa0426760 | 0.852110 | 5.724381e-61 | -8.615850e-47 |
Msa0202110 | Msa0426760 | 0.813954 | 1.970000e-51 | -8.615850e-47 |
Msa0202410 | Msa0426760 | 0.805972 | 1.031371e-49 | -8.615850e-47 |
Msa0204960 | Msa0426760 | 0.830697 | 2.537598e-55 | -8.615850e-47 |
Msa0206690 | Msa0426760 | 0.800867 | 1.178397e-48 | -8.615850e-47 |
Msa0207700 | Msa0426760 | 0.805466 | 1.317068e-49 | -8.615850e-47 |
Msa0209500 | Msa0426760 | 0.815182 | 1.053673e-51 | -8.615850e-47 |
Msa0229170 | Msa0426760 | 0.802286 | 6.030730e-49 | -8.615850e-47 |
Msa0231100 | Msa0426760 | 0.822496 | 2.296636e-53 | -8.615850e-47 |
Msa0233370 | Msa0426760 | 0.805839 | 1.099554e-49 | -8.615850e-47 |
Msa0385500 | Msa0426760 | 0.810533 | 1.099530e-50 | -8.615850e-47 |
Msa0426760 | Msa0427120 | 0.809160 | 2.171017e-50 | -8.615850e-47 |
Msa0426760 | Msa0450400 | -0.806657 | 7.396585e-50 | -8.615850e-47 |
Msa0426760 | Msa0473190 | 0.866958 | 1.947348e-65 | -8.615850e-47 |
Msa0426760 | Msa0481970 | 0.805493 | 1.299953e-49 | -8.615850e-47 |
Msa0426760 | Msa0484740 | 0.811496 | 6.801456e-51 | -8.615850e-47 |
Msa0426760 | Msa0485240 | 0.824612 | 7.343282e-54 | -8.615850e-47 |
Msa0426760 | Msa0517560 | 0.930974 | 7.478544e-94 | -8.615850e-47 |
Msa0426760 | Msa0531250 | 0.801316 | 9.538521e-49 | -8.615850e-47 |
Msa0426760 | Msa0547160 | 0.812893 | 3.371743e-51 | -8.615850e-47 |
Msa0426760 | Msa0547990 | 0.807392 | 5.168766e-50 | -8.615850e-47 |
Msa0426760 | Msa0556060 | 0.809837 | 1.553187e-50 | -8.615850e-47 |
Msa0426760 | Msa0581110 | 0.812209 | 4.756079e-51 | -8.615850e-47 |
Msa0426760 | Msa0588360 | 0.800491 | 1.405589e-48 | -8.615850e-47 |
Msa0426760 | Msa0620930 | 0.802376 | 5.776946e-49 | -8.615850e-47 |
Msa0426760 | Msa0628420 | 0.801369 | 9.303557e-49 | -8.615850e-47 |
Msa0426760 | Msa0662630 | 0.824209 | 9.138436e-54 | -8.615850e-47 |
Msa0426760 | Msa0666230 | 0.813528 | 2.445531e-51 | -8.615850e-47 |
Msa0426760 | Msa0669520 | 0.849982 | 2.278530e-60 | -8.615850e-47 |
Msa0426760 | Msa0682680 | 0.831367 | 1.738132e-55 | -8.615850e-47 |
Msa0426760 | Msa0697720 | 0.824879 | 6.352525e-54 | -8.615850e-47 |
Msa0426760 | Msa0707250 | 0.817719 | 2.850492e-52 | -8.615850e-47 |
Msa0426760 | Msa0808800 | 0.810025 | 1.415232e-50 | -8.615850e-47 |
Msa0426760 | Msa0810030 | 0.817876 | 2.626626e-52 | -8.615850e-47 |
Msa0426760 | Msa0822310 | -0.817835 | 2.683393e-52 | -8.615850e-47 |
Msa0426760 | Msa0822500 | 0.800753 | 1.242893e-48 | -8.615850e-47 |
Msa0426760 | Msa0890550 | 0.842362 | 2.708601e-58 | -8.615850e-47 |
Msa0426760 | Msa0892640 | 0.821971 | 3.040552e-53 | -8.615850e-47 |
Msa0426760 | Msa0903780 | 0.802674 | 5.016112e-49 | -8.615850e-47 |
Msa0426760 | Msa0905750 | 0.823363 | 1.442025e-53 | -8.615850e-47 |
Msa0426760 | Msa0944610 | 0.802709 | 4.932539e-49 | -8.615850e-47 |
Msa0426760 | Msa0997970 | 0.807028 | 6.172834e-50 | -8.615850e-47 |
Msa0426760 | Msa1006840 | 0.801725 | 7.862787e-49 | -8.615850e-47 |
Msa0426760 | Msa1029070 | 0.818442 | 1.955996e-52 | -8.615850e-47 |
Msa0426760 | Msa1078170 | 0.817958 | 2.516483e-52 | -8.615850e-47 |
Msa0426760 | Msa1081930 | 0.819159 | 1.344632e-52 | -8.615850e-47 |
Msa0426760 | Msa1089320 | 0.828541 | 8.490157e-55 | -8.615850e-47 |
Msa0426760 | Msa1089450 | 0.828800 | 7.350991e-55 | -8.615850e-47 |
Msa0426760 | Msa1126830 | 0.808704 | 2.717317e-50 | -8.615850e-47 |
Msa0426760 | Msa1127590 | 0.806359 | 8.545531e-50 | -8.615850e-47 |
Msa0426760 | Msa1133230 | 0.807463 | 4.993750e-50 | -8.615850e-47 |
Msa0426760 | Msa1156160 | 0.815625 | 8.401727e-52 | -8.615850e-47 |
Msa0426760 | Msa1165780 | 0.803412 | 3.530266e-49 | -8.615850e-47 |
Msa0426760 | Msa1173300 | 0.810536 | 1.097664e-50 | -8.615850e-47 |
Msa0426760 | Msa1178580 | 0.802376 | 5.776946e-49 | -8.615850e-47 |
Msa0426760 | Msa1202580 | 0.804494 | 2.102847e-49 | -8.615850e-47 |
Msa0426760 | Msa1204830 | 0.823450 | 1.376242e-53 | -8.615850e-47 |
Msa0426760 | Msa1216260 | 0.819165 | 1.340023e-52 | -8.615850e-47 |
Msa0426760 | Msa1227460 | 0.823102 | 1.659696e-53 | -8.615850e-47 |
Msa0426760 | Msa1232740 | 0.836708 | 7.987703e-57 | -8.615850e-47 |
Msa0426760 | Msa1233850 | 0.804475 | 2.121922e-49 | -8.615850e-47 |
Msa0426760 | Msa1251160 | 0.805054 | 1.606306e-49 | -8.615850e-47 |
Msa0426760 | Msa1254730 | 0.816503 | 5.348730e-52 | -8.615850e-47 |
Msa0426760 | Msa1264210 | 0.816000 | 6.929022e-52 | -8.615850e-47 |
Msa0426760 | Msa1265590 | 0.835131 | 2.006235e-56 | -8.615850e-47 |
Msa0426760 | Msa1270420 | 0.824412 | 8.187970e-54 | -8.615850e-47 |
Msa0426760 | Msa1275590 | 0.840271 | 9.613570e-58 | -8.615850e-47 |
Msa0426760 | Msa1276150 | 0.802059 | 6.714545e-49 | -8.615850e-47 |
Msa0426760 | Msa1307600 | 0.813056 | 3.105241e-51 | -8.615850e-47 |
Msa0426760 | Msa1313320 | 0.833983 | 3.898197e-56 | -8.615850e-47 |
Msa0426760 | Msa1351540 | 0.816088 | 6.621045e-52 | -8.615850e-47 |
Msa0426760 | Msa1360980 | 0.804954 | 1.685291e-49 | -8.615850e-47 |
Msa0426760 | Msa1362420 | 0.812301 | 4.541317e-51 | -8.615850e-47 |
Msa0426760 | Msa1364210 | 0.828000 | 1.146437e-54 | -8.615850e-47 |
Msa0426760 | Msa1369690 | 0.840169 | 1.022379e-57 | -8.615850e-47 |
Msa0426760 | Msa1379760 | 0.806535 | 7.846672e-50 | -8.615850e-47 |
Msa0426760 | Msa1390700 | 0.811294 | 7.524263e-51 | -8.615850e-47 |
Msa0426760 | Msa1392910 | 0.801397 | 9.181887e-49 | -8.615850e-47 |
Msa0426760 | Msa1412530 | 0.816126 | 6.492140e-52 | -8.615850e-47 |
Msa0426760 | Msa1418240 | 0.812785 | 3.559920e-51 | -8.615850e-47 |
Msa0426760 | Msa1451160 | 0.812827 | 3.485844e-51 | -8.615850e-47 |
Msa0426760 | Msa1454450 | 0.803630 | 3.180134e-49 | -8.615850e-47 |
Msa0426760 | Msa1454680 | 0.801573 | 8.449631e-49 | -8.615850e-47 |
Msa0426760 | Msa1461540 | 0.804574 | 2.023286e-49 | -8.615850e-47 |
Msa0240900 | Msa0426760 | 0.812867 | 3.415946e-51 | -8.615850e-47 |
Msa0241830 | Msa0426760 | 0.822848 | 1.901260e-53 | -8.615850e-47 |
Msa0244980 | Msa0426760 | 0.807497 | 4.909962e-50 | -8.615850e-47 |
Msa0249580 | Msa0426760 | 0.871521 | 6.413052e-67 | -8.615850e-47 |
Msa0257490 | Msa0426760 | 0.837492 | 5.033865e-57 | -8.615850e-47 |
Msa0259210 | Msa0426760 | 0.819638 | 1.045584e-52 | -8.615850e-47 |
Msa0269470 | Msa0426760 | 0.825675 | 4.119229e-54 | -8.615850e-47 |
Msa0278570 | Msa0426760 | 0.805406 | 1.355622e-49 | -8.615850e-47 |
Msa0281530 | Msa0426760 | 0.836030 | 1.188079e-56 | -8.615850e-47 |
Msa0283420 | Msa0426760 | 0.837069 | 6.459712e-57 | -8.615850e-47 |
Msa0288080 | Msa0426760 | 0.808019 | 3.804222e-50 | -8.615850e-47 |
Msa0296790 | Msa0426760 | 0.822375 | 2.450089e-53 | -8.615850e-47 |
Msa0296820 | Msa0426760 | 0.812230 | 4.706676e-51 | -8.615850e-47 |
Msa0296920 | Msa0426760 | 0.802954 | 4.390864e-49 | -8.615850e-47 |
Msa0300320 | Msa0426760 | 0.805017 | 1.634915e-49 | -8.615850e-47 |
Msa0317970 | Msa0426760 | 0.834180 | 3.478078e-56 | -8.615850e-47 |
Msa0320590 | Msa0426760 | 0.813044 | 3.123113e-51 | -8.615850e-47 |
Msa0322240 | Msa0426760 | 0.816241 | 6.120487e-52 | -8.615850e-47 |
Msa0322900 | Msa0426760 | 0.820923 | 5.307553e-53 | -8.615850e-47 |
Msa0326480 | Msa0426760 | 0.872983 | 2.091114e-67 | -8.615850e-47 |
Msa0336310 | Msa0426760 | 0.801119 | 1.046581e-48 | -8.615850e-47 |
Msa0336320 | Msa0426760 | 0.813153 | 2.956701e-51 | -8.615850e-47 |
Msa0341690 | Msa0426760 | 0.803108 | 4.079899e-49 | -8.615850e-47 |
Msa0357900 | Msa0426760 | 0.833235 | 5.991458e-56 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0426760 | MtrunA17_Chr3g0128921 | 99.541 | 218 | 1 | 0 | 8 | 225 | 5 | 222 | 6.39e-164 | 451 |
Msa0426760 | MtrunA17_Chr2g0325151 | 99.087 | 219 | 2 | 0 | 8 | 226 | 5 | 223 | 1.28e-163 | 450 |
Msa0426760 | MtrunA17_Chr3g0108371 | 92.523 | 214 | 16 | 0 | 8 | 221 | 5 | 218 | 9.36e-149 | 412 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0426760 | AT1G26910.1 | 89.252 | 214 | 23 | 0 | 8 | 221 | 5 | 218 | 2.67e-144 | 402 |
Msa0426760 | AT1G14320.1 | 88.785 | 214 | 24 | 0 | 8 | 221 | 5 | 218 | 5.31e-143 | 398 |
Msa0426760 | AT1G66580.1 | 87.442 | 215 | 27 | 0 | 8 | 222 | 5 | 219 | 3.79e-141 | 394 |
Msa0426760 | AT1G26910.2 | 88.398 | 181 | 21 | 0 | 41 | 221 | 1 | 181 | 2.27e-118 | 335 |
Msa0426760 | AT1G14320.2 | 77.660 | 94 | 19 | 1 | 130 | 221 | 31 | 124 | 1.50e-46 | 150 |
Msa0426760 | AT1G14320.2 | 97.436 | 39 | 1 | 0 | 41 | 79 | 1 | 39 | 2.03e-20 | 84.0 |
Find 84 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCATAGAGATTTGGTTTATT+TGG | 0.151129 | 3_2:+77359010 | Msa0426760:three_prime_UTR |
GGTTCAATTTCTTTGAAAAT+TGG | 0.171559 | 3_2:+77359110 | Msa0426760:three_prime_UTR |
TTCTCACATTAAATACTAAA+AGG | 0.270230 | 3_2:-77358977 | None:intergenic |
ATGCTTTCCACTTGAGAGTT+AGG | 0.278634 | 3_2:+77358003 | Msa0426760:CDS |
TTCATCCATTCCATGTTCTT+AGG | 0.295164 | 3_2:+77358027 | Msa0426760:CDS |
ACTGGTATGAGAGGGGCTTT+TGG | 0.309142 | 3_2:+77358092 | Msa0426760:CDS |
CTTTGACATGTATTTGTTGC+AGG | 0.312261 | 3_2:-77357967 | None:intergenic |
CCAAATAAACCAAATCTCTA+TGG | 0.318302 | 3_2:-77359010 | None:intergenic |
CAGAAACGTGACTTTGGATA+TGG | 0.332410 | 3_2:-77357801 | None:intergenic |
ATTTGCAAGTGAAGTAGATT+TGG | 0.351457 | 3_2:-77359058 | None:intergenic |
ACCATTGGCCAACCGTCAAC+CGG | 0.355147 | 3_2:+77358737 | Msa0426760:CDS |
GTTTCCTTTCTGTGTTCATC+TGG | 0.355959 | 3_2:+77357890 | Msa0426760:CDS |
CTGTGTTCATCTGGTCAGTT+GGG | 0.370061 | 3_2:+77357899 | Msa0426760:CDS |
ATTTGACGGTAACACCTTGC+AGG | 0.370519 | 3_2:-77357768 | None:intergenic |
ATTCGGTGATTCTCACGAAA+TGG | 0.374153 | 3_2:+77359088 | Msa0426760:three_prime_UTR |
AACATCATAAATCCTGATCT+TGG | 0.385450 | 3_2:-77357841 | None:intergenic |
TCTGTGTTCATCTGGTCAGT+TGG | 0.393251 | 3_2:+77357898 | Msa0426760:CDS |
ATCAGGCATAATTCTGTTCT+CGG | 0.407151 | 3_2:-77358454 | None:intergenic |
TTTGTGCTAGAGTGGCTATT+GGG | 0.420431 | 3_2:+77358129 | Msa0426760:CDS |
GCAGTCAGGAAAGCTCTTCC+CGG | 0.421225 | 3_2:-77358756 | None:intergenic |
TTTCATGTGCGGGAGCTGAT+AGG | 0.426261 | 3_2:+77358063 | Msa0426760:CDS |
TTGCAGCTTCTTGGATGCCA+TGG | 0.430564 | 3_2:+77358714 | Msa0426760:intron |
TGCTAGAGTGGCTATTGGGC+AGG | 0.435686 | 3_2:+77358133 | Msa0426760:CDS |
TGCTTTCCACTTGAGAGTTA+GGG | 0.441216 | 3_2:+77358004 | Msa0426760:CDS |
GGAAAGCTCTTCCCGGTTGA+CGG | 0.444695 | 3_2:-77358749 | None:intergenic |
GTTTGTGCTAGAGTGGCTAT+TGG | 0.453432 | 3_2:+77358128 | Msa0426760:CDS |
CATGTCAAAGTTTGCAGGAA+AGG | 0.453517 | 3_2:+77357980 | Msa0426760:CDS |
AGAATCAAGGGCAAAGAGAT+TGG | 0.454933 | 3_2:-77359219 | None:intergenic |
TTCGGTGATTCTCACGAAAT+GGG | 0.455075 | 3_2:+77359089 | Msa0426760:three_prime_UTR |
ACCTTAGCATTCACACCATC+AGG | 0.455380 | 3_2:-77358471 | None:intergenic |
AGCAGCTTCAAGTGCCTCAC+TGG | 0.456981 | 3_2:-77357937 | None:intergenic |
ACTTGCAAATCTCACTGATT+CGG | 0.458990 | 3_2:+77359071 | Msa0426760:three_prime_UTR |
CCCGGTTGACGGTTGGCCAA+TGG | 0.460642 | 3_2:-77358738 | None:intergenic |
ATGGCTTGTTCTTAATTTGA+CGG | 0.461186 | 3_2:-77357782 | None:intergenic |
CCACGGCAGAAACGTGACTT+TGG | 0.463875 | 3_2:-77357807 | None:intergenic |
CGTGCTAAGTTTAAGTTCCC+TGG | 0.464822 | 3_2:+77358215 | Msa0426760:CDS |
CCTCATTACAGCTGGCAGTC+AGG | 0.466220 | 3_2:-77358770 | None:intergenic |
AAATACATGTCAAAGTTTGC+AGG | 0.470834 | 3_2:+77357975 | Msa0426760:CDS |
TTGAGGAAAAGAAAGAATCA+AGG | 0.477618 | 3_2:-77359232 | None:intergenic |
ACATCATAAATCCTGATCTT+GGG | 0.479634 | 3_2:-77357840 | None:intergenic |
TCTTCTTTCTGTTCGTTGCA+AGG | 0.480717 | 3_2:+77358157 | Msa0426760:CDS |
TAAATCCTGATCTTGGGATC+AGG | 0.483079 | 3_2:-77357834 | None:intergenic |
CTCAAGGTCGCTCTTGCAAA+CGG | 0.488436 | 3_2:-77358909 | None:intergenic |
TGCCAGCTGTAATGAGGCTT+AGG | 0.494501 | 3_2:+77358776 | Msa0426760:CDS |
ATGAGTAAGTAAGAAAAGTT+CGG | 0.495313 | 3_2:-77359035 | None:intergenic |
TCTTGGATGCCATGGACCAT+TGG | 0.496449 | 3_2:+77358722 | Msa0426760:CDS |
CCTGACTGCCAGCTGTAATG+AGG | 0.497594 | 3_2:+77358770 | Msa0426760:CDS |
ATTTCTTTGAAAATTGGTGA+TGG | 0.500390 | 3_2:+77359116 | Msa0426760:three_prime_UTR |
AACAAGATGCTTTCATGTGC+GGG | 0.504380 | 3_2:+77358053 | Msa0426760:CDS |
AGCTCTTCCCGGTTGACGGT+TGG | 0.505552 | 3_2:-77358745 | None:intergenic |
GTGTTCCTGATCCCAAGATC+AGG | 0.511204 | 3_2:+77357829 | Msa0426760:CDS |
GTCAAAAGATCATTGTTAGC+AGG | 0.521890 | 3_2:+77358240 | Msa0426760:CDS |
CAACAACAGCCATCATGCTC+AGG | 0.528429 | 3_2:+77358181 | Msa0426760:CDS |
AGATCATTGTTAGCAGGAAG+TGG | 0.531763 | 3_2:+77358246 | Msa0426760:CDS |
AGCCTAAGCCTCATTACAGC+TGG | 0.535691 | 3_2:-77358778 | None:intergenic |
GACGGTTGGCCAATGGTCCA+TGG | 0.540431 | 3_2:-77358731 | None:intergenic |
AAGATCAGGATTTATGATGT+TGG | 0.540872 | 3_2:+77357843 | Msa0426760:CDS |
ACAAGGTGTTTGTGCTAGAG+TGG | 0.563189 | 3_2:+77358121 | Msa0426760:CDS |
GGCTTCAGACTGGTATGAGA+GGG | 0.563519 | 3_2:+77358084 | Msa0426760:CDS |
CCATTGGCCAACCGTCAACC+GGG | 0.565470 | 3_2:+77358738 | Msa0426760:CDS |
ATACTAAAAGGAGAAATAGC+AGG | 0.569566 | 3_2:-77358965 | None:intergenic |
TCATCTGGTCAGTTGGGAGA+AGG | 0.572889 | 3_2:+77357905 | Msa0426760:CDS |
GGAGAGCCTCCTGAGCATGA+TGG | 0.573200 | 3_2:-77358190 | None:intergenic |
CTGACCAGATGAACACAGAA+AGG | 0.573863 | 3_2:-77357894 | None:intergenic |
TGAGGAAAAGAAAGAATCAA+GGG | 0.574614 | 3_2:-77359231 | None:intergenic |
GATGAACCCTAACTCTCAAG+TGG | 0.578245 | 3_2:-77358010 | None:intergenic |
CCAAAGTCACGTTTCTGCCG+TGG | 0.586608 | 3_2:+77357807 | Msa0426760:CDS |
TAAGATTAATCATCAACTCA+AGG | 0.592706 | 3_2:-77358925 | None:intergenic |
GTGAGGCACTTGAAGCTGCT+AGG | 0.594487 | 3_2:+77357940 | Msa0426760:CDS |
CAACAAGATGCTTTCATGTG+CGG | 0.597854 | 3_2:+77358052 | Msa0426760:CDS |
GATGTTGGCATGAAGAAGAA+AGG | 0.601420 | 3_2:+77357858 | Msa0426760:CDS |
TTGATCCTAAGAACATGGAA+TGG | 0.602625 | 3_2:-77358032 | None:intergenic |
TTAACTTCAGATAATCAGCT+CGG | 0.606395 | 3_2:-77358428 | None:intergenic |
AGGCTTCAGACTGGTATGAG+AGG | 0.607126 | 3_2:+77358083 | Msa0426760:CDS |
CAACAGCCATCATGCTCAGG+AGG | 0.612805 | 3_2:+77358184 | Msa0426760:CDS |
TCTTGTTGATCCTAAGAACA+TGG | 0.613434 | 3_2:-77358037 | None:intergenic |
GCCTGATGGTGTGAATGCTA+AGG | 0.639133 | 3_2:+77358470 | Msa0426760:CDS |
GAGAACAGAATTATGCCTGA+TGG | 0.652808 | 3_2:+77358456 | Msa0426760:CDS |
GGAGCTGATAGGCTTCAGAC+TGG | 0.660599 | 3_2:+77358074 | Msa0426760:CDS |
ACTCTAGCACAAACACCTTG+TGG | 0.661898 | 3_2:-77358119 | None:intergenic |
GCTTCAGACTGGTATGAGAG+GGG | 0.693964 | 3_2:+77358085 | Msa0426760:CDS |
GAAGGAAAATGTGTCCAGTG+AGG | 0.706232 | 3_2:+77357923 | Msa0426760:CDS |
GGAACTTAAACTTAGCACGA+CGG | 0.721521 | 3_2:-77358211 | None:intergenic |
TCTTGGGATCAGGAACACCA+CGG | 0.737353 | 3_2:-77357824 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTAATCTTATATTTTGTTA+TGG | + | chr3_2:77358938-77358957 | Msa0426760:three_prime_UTR | 10.0% |
!!! | ATTAATCTTATATTTTGTTA+TGG | + | chr3_2:77358938-77358957 | Msa0426760:three_prime_UTR | 10.0% |
!! | TATTTAATGTGAGAAAAAAA+AGG | + | chr3_2:77358985-77359004 | Msa0426760:three_prime_UTR | 15.0% |
!! | TATTTAATGTGAGAAAAAAA+AGG | + | chr3_2:77358985-77359004 | Msa0426760:three_prime_UTR | 15.0% |
!! | CAATGAATATAGTTAAAACA+TGG | - | chr3_2:77358369-77358388 | None:intergenic | 20.0% |
!!! | ATCTTAGTTTGGAATATATT+GGG | + | chr3_2:77358581-77358600 | Msa0426760:intron | 20.0% |
!!! | AAAAAGAACTTTAAGTTGAA+AGG | - | chr3_2:77358688-77358707 | None:intergenic | 20.0% |
!! | TTCTCACATTAAATACTAAA+AGG | - | chr3_2:77358980-77358999 | None:intergenic | 20.0% |
!! | CAATGAATATAGTTAAAACA+TGG | - | chr3_2:77358369-77358388 | None:intergenic | 20.0% |
!!! | ATCTTAGTTTGGAATATATT+GGG | + | chr3_2:77358581-77358600 | Msa0426760:intron | 20.0% |
!!! | AAAAAGAACTTTAAGTTGAA+AGG | - | chr3_2:77358688-77358707 | None:intergenic | 20.0% |
!! | TTCTCACATTAAATACTAAA+AGG | - | chr3_2:77358980-77358999 | None:intergenic | 20.0% |
!! | AAAACATGGATTGAAGTAAA+AGG | - | chr3_2:77358355-77358374 | None:intergenic | 25.0% |
!!! | TTGTTTTAAATGCTTCTTCA+GGG | + | chr3_2:77358389-77358408 | Msa0426760:intron | 25.0% |
! | TAACTTGAATCATCTTAGTT+TGG | + | chr3_2:77358570-77358589 | Msa0426760:intron | 25.0% |
!! | CATCTTAGTTTGGAATATAT+TGG | + | chr3_2:77358580-77358599 | Msa0426760:intron | 25.0% |
!! | TCTTAGTTTGGAATATATTG+GGG | + | chr3_2:77358582-77358601 | Msa0426760:intron | 25.0% |
!!! | GTTAGTTTTGTCTAAGTAAT+CGG | + | chr3_2:77358662-77358681 | Msa0426760:intron | 25.0% |
! | TAAGATTAATCATCAACTCA+AGG | - | chr3_2:77358928-77358947 | None:intergenic | 25.0% |
! | ATGAGTAAGTAAGAAAAGTT+CGG | - | chr3_2:77359038-77359057 | None:intergenic | 25.0% |
!! | GGTTCAATTTCTTTGAAAAT+TGG | + | chr3_2:77359110-77359129 | Msa0426760:three_prime_UTR | 25.0% |
!! | ATTTCTTTGAAAATTGGTGA+TGG | + | chr3_2:77359116-77359135 | Msa0426760:three_prime_UTR | 25.0% |
!! | AAAACATGGATTGAAGTAAA+AGG | - | chr3_2:77358355-77358374 | None:intergenic | 25.0% |
!!! | TTGTTTTAAATGCTTCTTCA+GGG | + | chr3_2:77358389-77358408 | Msa0426760:intron | 25.0% |
! | TAACTTGAATCATCTTAGTT+TGG | + | chr3_2:77358570-77358589 | Msa0426760:intron | 25.0% |
!! | CATCTTAGTTTGGAATATAT+TGG | + | chr3_2:77358580-77358599 | Msa0426760:intron | 25.0% |
!! | TCTTAGTTTGGAATATATTG+GGG | + | chr3_2:77358582-77358601 | Msa0426760:intron | 25.0% |
!!! | GTTAGTTTTGTCTAAGTAAT+CGG | + | chr3_2:77358662-77358681 | Msa0426760:intron | 25.0% |
! | TAAGATTAATCATCAACTCA+AGG | - | chr3_2:77358928-77358947 | None:intergenic | 25.0% |
! | ATGAGTAAGTAAGAAAAGTT+CGG | - | chr3_2:77359038-77359057 | None:intergenic | 25.0% |
!! | GGTTCAATTTCTTTGAAAAT+TGG | + | chr3_2:77359110-77359129 | Msa0426760:three_prime_UTR | 25.0% |
!! | ATTTCTTTGAAAATTGGTGA+TGG | + | chr3_2:77359116-77359135 | Msa0426760:three_prime_UTR | 25.0% |
!! | TTTTATTTATAGGACCTGCA+AGG | + | chr3_2:77357754-77357773 | Msa0426760:CDS | 30.0% |
!! | ATGGCTTGTTCTTAATTTGA+CGG | - | chr3_2:77357785-77357804 | None:intergenic | 30.0% |
ACATCATAAATCCTGATCTT+GGG | - | chr3_2:77357843-77357862 | None:intergenic | 30.0% | |
AACATCATAAATCCTGATCT+TGG | - | chr3_2:77357844-77357863 | None:intergenic | 30.0% | |
AAGATCAGGATTTATGATGT+TGG | + | chr3_2:77357843-77357862 | Msa0426760:CDS | 30.0% | |
AAATACATGTCAAAGTTTGC+AGG | + | chr3_2:77357975-77357994 | Msa0426760:CDS | 30.0% | |
! | TGCTAACAATGATCTTTTGA+CGG | - | chr3_2:77358241-77358260 | None:intergenic | 30.0% |
GTGGTAAGTATTTGTTCTAT+TGG | + | chr3_2:77358265-77358284 | Msa0426760:intron | 30.0% | |
!!! | GTTGTTTTAAATGCTTCTTC+AGG | + | chr3_2:77358388-77358407 | Msa0426760:intron | 30.0% |
!! | TGTTTTAAATGCTTCTTCAG+GGG | + | chr3_2:77358390-77358409 | Msa0426760:intron | 30.0% |
TTAACTTCAGATAATCAGCT+CGG | - | chr3_2:77358431-77358450 | None:intergenic | 30.0% | |
AGAAACAAATATCCAACATG+CGG | - | chr3_2:77358526-77358545 | None:intergenic | 30.0% | |
AATCTGTTTGAACACTCAAT+TGG | + | chr3_2:77358627-77358646 | Msa0426760:intron | 30.0% | |
ATACTAAAAGGAGAAATAGC+AGG | - | chr3_2:77358968-77358987 | None:intergenic | 30.0% | |
AAAAAGGTTCCATAGAGATT+TGG | + | chr3_2:77359001-77359020 | Msa0426760:three_prime_UTR | 30.0% | |
CCAAATAAACCAAATCTCTA+TGG | - | chr3_2:77359013-77359032 | None:intergenic | 30.0% | |
! | CCATAGAGATTTGGTTTATT+TGG | + | chr3_2:77359010-77359029 | Msa0426760:three_prime_UTR | 30.0% |
ATTTGCAAGTGAAGTAGATT+TGG | - | chr3_2:77359061-77359080 | None:intergenic | 30.0% | |
!! | TTTTATTTATAGGACCTGCA+AGG | + | chr3_2:77357754-77357773 | Msa0426760:CDS | 30.0% |
!! | ATGGCTTGTTCTTAATTTGA+CGG | - | chr3_2:77357785-77357804 | None:intergenic | 30.0% |
ACATCATAAATCCTGATCTT+GGG | - | chr3_2:77357843-77357862 | None:intergenic | 30.0% | |
AACATCATAAATCCTGATCT+TGG | - | chr3_2:77357844-77357863 | None:intergenic | 30.0% | |
AAGATCAGGATTTATGATGT+TGG | + | chr3_2:77357843-77357862 | Msa0426760:CDS | 30.0% | |
AAATACATGTCAAAGTTTGC+AGG | + | chr3_2:77357975-77357994 | Msa0426760:CDS | 30.0% | |
! | TGCTAACAATGATCTTTTGA+CGG | - | chr3_2:77358241-77358260 | None:intergenic | 30.0% |
GTGGTAAGTATTTGTTCTAT+TGG | + | chr3_2:77358265-77358284 | Msa0426760:intron | 30.0% | |
!!! | GTTGTTTTAAATGCTTCTTC+AGG | + | chr3_2:77358388-77358407 | Msa0426760:intron | 30.0% |
!! | TGTTTTAAATGCTTCTTCAG+GGG | + | chr3_2:77358390-77358409 | Msa0426760:intron | 30.0% |
TTAACTTCAGATAATCAGCT+CGG | - | chr3_2:77358431-77358450 | None:intergenic | 30.0% | |
AGAAACAAATATCCAACATG+CGG | - | chr3_2:77358526-77358545 | None:intergenic | 30.0% | |
AATCTGTTTGAACACTCAAT+TGG | + | chr3_2:77358627-77358646 | Msa0426760:intron | 30.0% | |
ATACTAAAAGGAGAAATAGC+AGG | - | chr3_2:77358968-77358987 | None:intergenic | 30.0% | |
AAAAAGGTTCCATAGAGATT+TGG | + | chr3_2:77359001-77359020 | Msa0426760:three_prime_UTR | 30.0% | |
CCAAATAAACCAAATCTCTA+TGG | - | chr3_2:77359013-77359032 | None:intergenic | 30.0% | |
! | CCATAGAGATTTGGTTTATT+TGG | + | chr3_2:77359010-77359029 | Msa0426760:three_prime_UTR | 30.0% |
ATTTGCAAGTGAAGTAGATT+TGG | - | chr3_2:77359061-77359080 | None:intergenic | 30.0% | |
! | CTTTGACATGTATTTGTTGC+AGG | - | chr3_2:77357970-77357989 | None:intergenic | 35.0% |
TTCATCCATTCCATGTTCTT+AGG | + | chr3_2:77358027-77358046 | Msa0426760:CDS | 35.0% | |
TTGATCCTAAGAACATGGAA+TGG | - | chr3_2:77358035-77358054 | None:intergenic | 35.0% | |
TCTTGTTGATCCTAAGAACA+TGG | - | chr3_2:77358040-77358059 | None:intergenic | 35.0% | |
GTCAAAAGATCATTGTTAGC+AGG | + | chr3_2:77358240-77358259 | Msa0426760:CDS | 35.0% | |
GTTCTATTGGCAGATTTGAA+TGG | + | chr3_2:77358278-77358297 | Msa0426760:intron | 35.0% | |
GCAAATCTACAAAGGATACA+AGG | - | chr3_2:77358314-77358333 | None:intergenic | 35.0% | |
TCCTTTGTAGATTTGCAGTA+TGG | + | chr3_2:77358318-77358337 | Msa0426760:intron | 35.0% | |
CCTTTGTAGATTTGCAGTAT+GGG | + | chr3_2:77358319-77358338 | Msa0426760:intron | 35.0% | |
ATCAGGCATAATTCTGTTCT+CGG | - | chr3_2:77358457-77358476 | None:intergenic | 35.0% | |
! | GCAAAAAGTATGTCTTTAGC+AGG | - | chr3_2:77358550-77358569 | None:intergenic | 35.0% |
! | TTTGTGATTTTGCAGCTTCT+TGG | + | chr3_2:77358705-77358724 | Msa0426760:intron | 35.0% |
! | ACTTGCAAATCTCACTGATT+CGG | + | chr3_2:77359071-77359090 | Msa0426760:three_prime_UTR | 35.0% |
! | CTTTGACATGTATTTGTTGC+AGG | - | chr3_2:77357970-77357989 | None:intergenic | 35.0% |
TTCATCCATTCCATGTTCTT+AGG | + | chr3_2:77358027-77358046 | Msa0426760:CDS | 35.0% | |
TTGATCCTAAGAACATGGAA+TGG | - | chr3_2:77358035-77358054 | None:intergenic | 35.0% | |
TCTTGTTGATCCTAAGAACA+TGG | - | chr3_2:77358040-77358059 | None:intergenic | 35.0% | |
GTCAAAAGATCATTGTTAGC+AGG | + | chr3_2:77358240-77358259 | Msa0426760:CDS | 35.0% | |
GTTCTATTGGCAGATTTGAA+TGG | + | chr3_2:77358278-77358297 | Msa0426760:intron | 35.0% | |
GCAAATCTACAAAGGATACA+AGG | - | chr3_2:77358314-77358333 | None:intergenic | 35.0% | |
TCCTTTGTAGATTTGCAGTA+TGG | + | chr3_2:77358318-77358337 | Msa0426760:intron | 35.0% | |
CCTTTGTAGATTTGCAGTAT+GGG | + | chr3_2:77358319-77358338 | Msa0426760:intron | 35.0% | |
ATCAGGCATAATTCTGTTCT+CGG | - | chr3_2:77358457-77358476 | None:intergenic | 35.0% | |
! | GCAAAAAGTATGTCTTTAGC+AGG | - | chr3_2:77358550-77358569 | None:intergenic | 35.0% |
! | TTTGTGATTTTGCAGCTTCT+TGG | + | chr3_2:77358705-77358724 | Msa0426760:intron | 35.0% |
! | ACTTGCAAATCTCACTGATT+CGG | + | chr3_2:77359071-77359090 | Msa0426760:three_prime_UTR | 35.0% |
CAGAAACGTGACTTTGGATA+TGG | - | chr3_2:77357804-77357823 | None:intergenic | 40.0% | |
TAAATCCTGATCTTGGGATC+AGG | - | chr3_2:77357837-77357856 | None:intergenic | 40.0% | |
GATGTTGGCATGAAGAAGAA+AGG | + | chr3_2:77357858-77357877 | Msa0426760:CDS | 40.0% | |
GTTTCCTTTCTGTGTTCATC+TGG | + | chr3_2:77357890-77357909 | Msa0426760:CDS | 40.0% | |
CATGTCAAAGTTTGCAGGAA+AGG | + | chr3_2:77357980-77357999 | Msa0426760:CDS | 40.0% | |
ATGCTTTCCACTTGAGAGTT+AGG | + | chr3_2:77358003-77358022 | Msa0426760:CDS | 40.0% | |
TGCTTTCCACTTGAGAGTTA+GGG | + | chr3_2:77358004-77358023 | Msa0426760:CDS | 40.0% | |
CAACAAGATGCTTTCATGTG+CGG | + | chr3_2:77358052-77358071 | Msa0426760:CDS | 40.0% | |
AACAAGATGCTTTCATGTGC+GGG | + | chr3_2:77358053-77358072 | Msa0426760:CDS | 40.0% | |
TTTGTGCTAGAGTGGCTATT+GGG | + | chr3_2:77358129-77358148 | Msa0426760:CDS | 40.0% | |
TCTTCTTTCTGTTCGTTGCA+AGG | + | chr3_2:77358157-77358176 | Msa0426760:CDS | 40.0% | |
GGAACTTAAACTTAGCACGA+CGG | - | chr3_2:77358214-77358233 | None:intergenic | 40.0% | |
AGATCATTGTTAGCAGGAAG+TGG | + | chr3_2:77358246-77358265 | Msa0426760:CDS | 40.0% | |
CCCATACTGCAAATCTACAA+AGG | - | chr3_2:77358322-77358341 | None:intergenic | 40.0% | |
!! | TTTGCAGTATGGGAGTACTT+TGG | + | chr3_2:77358329-77358348 | Msa0426760:intron | 40.0% |
GAGAACAGAATTATGCCTGA+TGG | + | chr3_2:77358456-77358475 | Msa0426760:CDS | 40.0% | |
GAATTCATTGTACCGCATGT+TGG | + | chr3_2:77358511-77358530 | Msa0426760:intron | 40.0% | |
! | ATTCGGTGATTCTCACGAAA+TGG | + | chr3_2:77359088-77359107 | Msa0426760:three_prime_UTR | 40.0% |
TTCGGTGATTCTCACGAAAT+GGG | + | chr3_2:77359089-77359108 | Msa0426760:three_prime_UTR | 40.0% | |
AGAATCAAGGGCAAAGAGAT+TGG | - | chr3_2:77359222-77359241 | None:intergenic | 40.0% | |
CAGAAACGTGACTTTGGATA+TGG | - | chr3_2:77357804-77357823 | None:intergenic | 40.0% | |
TAAATCCTGATCTTGGGATC+AGG | - | chr3_2:77357837-77357856 | None:intergenic | 40.0% | |
GATGTTGGCATGAAGAAGAA+AGG | + | chr3_2:77357858-77357877 | Msa0426760:CDS | 40.0% | |
GTTTCCTTTCTGTGTTCATC+TGG | + | chr3_2:77357890-77357909 | Msa0426760:CDS | 40.0% | |
CATGTCAAAGTTTGCAGGAA+AGG | + | chr3_2:77357980-77357999 | Msa0426760:CDS | 40.0% | |
ATGCTTTCCACTTGAGAGTT+AGG | + | chr3_2:77358003-77358022 | Msa0426760:CDS | 40.0% | |
TGCTTTCCACTTGAGAGTTA+GGG | + | chr3_2:77358004-77358023 | Msa0426760:CDS | 40.0% | |
CAACAAGATGCTTTCATGTG+CGG | + | chr3_2:77358052-77358071 | Msa0426760:CDS | 40.0% | |
AACAAGATGCTTTCATGTGC+GGG | + | chr3_2:77358053-77358072 | Msa0426760:CDS | 40.0% | |
TTTGTGCTAGAGTGGCTATT+GGG | + | chr3_2:77358129-77358148 | Msa0426760:CDS | 40.0% | |
TCTTCTTTCTGTTCGTTGCA+AGG | + | chr3_2:77358157-77358176 | Msa0426760:CDS | 40.0% | |
GGAACTTAAACTTAGCACGA+CGG | - | chr3_2:77358214-77358233 | None:intergenic | 40.0% | |
AGATCATTGTTAGCAGGAAG+TGG | + | chr3_2:77358246-77358265 | Msa0426760:CDS | 40.0% | |
CCCATACTGCAAATCTACAA+AGG | - | chr3_2:77358322-77358341 | None:intergenic | 40.0% | |
!! | TTTGCAGTATGGGAGTACTT+TGG | + | chr3_2:77358329-77358348 | Msa0426760:intron | 40.0% |
GAGAACAGAATTATGCCTGA+TGG | + | chr3_2:77358456-77358475 | Msa0426760:CDS | 40.0% | |
GAATTCATTGTACCGCATGT+TGG | + | chr3_2:77358511-77358530 | Msa0426760:intron | 40.0% | |
! | ATTCGGTGATTCTCACGAAA+TGG | + | chr3_2:77359088-77359107 | Msa0426760:three_prime_UTR | 40.0% |
TTCGGTGATTCTCACGAAAT+GGG | + | chr3_2:77359089-77359108 | Msa0426760:three_prime_UTR | 40.0% | |
AGAATCAAGGGCAAAGAGAT+TGG | - | chr3_2:77359222-77359241 | None:intergenic | 40.0% | |
ATTTGACGGTAACACCTTGC+AGG | - | chr3_2:77357771-77357790 | None:intergenic | 45.0% | |
CTGACCAGATGAACACAGAA+AGG | - | chr3_2:77357897-77357916 | None:intergenic | 45.0% | |
TCTGTGTTCATCTGGTCAGT+TGG | + | chr3_2:77357898-77357917 | Msa0426760:CDS | 45.0% | |
CTGTGTTCATCTGGTCAGTT+GGG | + | chr3_2:77357899-77357918 | Msa0426760:CDS | 45.0% | |
GAAGGAAAATGTGTCCAGTG+AGG | + | chr3_2:77357923-77357942 | Msa0426760:CDS | 45.0% | |
GATGAACCCTAACTCTCAAG+TGG | - | chr3_2:77358013-77358032 | None:intergenic | 45.0% | |
ACTCTAGCACAAACACCTTG+TGG | - | chr3_2:77358122-77358141 | None:intergenic | 45.0% | |
! | ACAAGGTGTTTGTGCTAGAG+TGG | + | chr3_2:77358121-77358140 | Msa0426760:CDS | 45.0% |
GTTTGTGCTAGAGTGGCTAT+TGG | + | chr3_2:77358128-77358147 | Msa0426760:CDS | 45.0% | |
! | CGTGCTAAGTTTAAGTTCCC+TGG | + | chr3_2:77358215-77358234 | Msa0426760:CDS | 45.0% |
! | CAATGATCTTTTGACGGCCA+GGG | - | chr3_2:77358235-77358254 | None:intergenic | 45.0% |
! | ACAATGATCTTTTGACGGCC+AGG | - | chr3_2:77358236-77358255 | None:intergenic | 45.0% |
ACCTTAGCATTCACACCATC+AGG | - | chr3_2:77358474-77358493 | None:intergenic | 45.0% | |
ATTTGACGGTAACACCTTGC+AGG | - | chr3_2:77357771-77357790 | None:intergenic | 45.0% | |
CTGACCAGATGAACACAGAA+AGG | - | chr3_2:77357897-77357916 | None:intergenic | 45.0% | |
TCTGTGTTCATCTGGTCAGT+TGG | + | chr3_2:77357898-77357917 | Msa0426760:CDS | 45.0% | |
CTGTGTTCATCTGGTCAGTT+GGG | + | chr3_2:77357899-77357918 | Msa0426760:CDS | 45.0% | |
GAAGGAAAATGTGTCCAGTG+AGG | + | chr3_2:77357923-77357942 | Msa0426760:CDS | 45.0% | |
GATGAACCCTAACTCTCAAG+TGG | - | chr3_2:77358013-77358032 | None:intergenic | 45.0% | |
ACTCTAGCACAAACACCTTG+TGG | - | chr3_2:77358122-77358141 | None:intergenic | 45.0% | |
! | ACAAGGTGTTTGTGCTAGAG+TGG | + | chr3_2:77358121-77358140 | Msa0426760:CDS | 45.0% |
GTTTGTGCTAGAGTGGCTAT+TGG | + | chr3_2:77358128-77358147 | Msa0426760:CDS | 45.0% | |
! | CGTGCTAAGTTTAAGTTCCC+TGG | + | chr3_2:77358215-77358234 | Msa0426760:CDS | 45.0% |
! | CAATGATCTTTTGACGGCCA+GGG | - | chr3_2:77358235-77358254 | None:intergenic | 45.0% |
! | ACAATGATCTTTTGACGGCC+AGG | - | chr3_2:77358236-77358255 | None:intergenic | 45.0% |
ACCTTAGCATTCACACCATC+AGG | - | chr3_2:77358474-77358493 | None:intergenic | 45.0% | |
TCTTGGGATCAGGAACACCA+CGG | - | chr3_2:77357827-77357846 | None:intergenic | 50.0% | |
GTGTTCCTGATCCCAAGATC+AGG | + | chr3_2:77357829-77357848 | Msa0426760:CDS | 50.0% | |
TCATCTGGTCAGTTGGGAGA+AGG | + | chr3_2:77357905-77357924 | Msa0426760:CDS | 50.0% | |
TTTCATGTGCGGGAGCTGAT+AGG | + | chr3_2:77358063-77358082 | Msa0426760:CDS | 50.0% | |
AGGCTTCAGACTGGTATGAG+AGG | + | chr3_2:77358083-77358102 | Msa0426760:CDS | 50.0% | |
GGCTTCAGACTGGTATGAGA+GGG | + | chr3_2:77358084-77358103 | Msa0426760:CDS | 50.0% | |
GCTTCAGACTGGTATGAGAG+GGG | + | chr3_2:77358085-77358104 | Msa0426760:CDS | 50.0% | |
! | ACTGGTATGAGAGGGGCTTT+TGG | + | chr3_2:77358092-77358111 | Msa0426760:CDS | 50.0% |
CAACAACAGCCATCATGCTC+AGG | + | chr3_2:77358181-77358200 | Msa0426760:CDS | 50.0% | |
! | GCCTGATGGTGTGAATGCTA+AGG | + | chr3_2:77358470-77358489 | Msa0426760:CDS | 50.0% |
TTGCAGCTTCTTGGATGCCA+TGG | + | chr3_2:77358714-77358733 | Msa0426760:intron | 50.0% | |
TCTTGGATGCCATGGACCAT+TGG | + | chr3_2:77358722-77358741 | Msa0426760:CDS | 50.0% | |
TGCCAGCTGTAATGAGGCTT+AGG | + | chr3_2:77358776-77358795 | Msa0426760:CDS | 50.0% | |
AGCCTAAGCCTCATTACAGC+TGG | - | chr3_2:77358781-77358800 | None:intergenic | 50.0% | |
CTCAAGGTCGCTCTTGCAAA+CGG | - | chr3_2:77358912-77358931 | None:intergenic | 50.0% | |
TCTTGGGATCAGGAACACCA+CGG | - | chr3_2:77357827-77357846 | None:intergenic | 50.0% | |
GTGTTCCTGATCCCAAGATC+AGG | + | chr3_2:77357829-77357848 | Msa0426760:CDS | 50.0% | |
TCATCTGGTCAGTTGGGAGA+AGG | + | chr3_2:77357905-77357924 | Msa0426760:CDS | 50.0% | |
TTTCATGTGCGGGAGCTGAT+AGG | + | chr3_2:77358063-77358082 | Msa0426760:CDS | 50.0% | |
AGGCTTCAGACTGGTATGAG+AGG | + | chr3_2:77358083-77358102 | Msa0426760:CDS | 50.0% | |
GGCTTCAGACTGGTATGAGA+GGG | + | chr3_2:77358084-77358103 | Msa0426760:CDS | 50.0% | |
GCTTCAGACTGGTATGAGAG+GGG | + | chr3_2:77358085-77358104 | Msa0426760:CDS | 50.0% | |
! | ACTGGTATGAGAGGGGCTTT+TGG | + | chr3_2:77358092-77358111 | Msa0426760:CDS | 50.0% |
CAACAACAGCCATCATGCTC+AGG | + | chr3_2:77358181-77358200 | Msa0426760:CDS | 50.0% | |
! | GCCTGATGGTGTGAATGCTA+AGG | + | chr3_2:77358470-77358489 | Msa0426760:CDS | 50.0% |
TTGCAGCTTCTTGGATGCCA+TGG | + | chr3_2:77358714-77358733 | Msa0426760:intron | 50.0% | |
TCTTGGATGCCATGGACCAT+TGG | + | chr3_2:77358722-77358741 | Msa0426760:CDS | 50.0% | |
TGCCAGCTGTAATGAGGCTT+AGG | + | chr3_2:77358776-77358795 | Msa0426760:CDS | 50.0% | |
AGCCTAAGCCTCATTACAGC+TGG | - | chr3_2:77358781-77358800 | None:intergenic | 50.0% | |
CTCAAGGTCGCTCTTGCAAA+CGG | - | chr3_2:77358912-77358931 | None:intergenic | 50.0% | |
CCACGGCAGAAACGTGACTT+TGG | - | chr3_2:77357810-77357829 | None:intergenic | 55.0% | |
CCAAAGTCACGTTTCTGCCG+TGG | + | chr3_2:77357807-77357826 | Msa0426760:CDS | 55.0% | |
AGCAGCTTCAAGTGCCTCAC+TGG | - | chr3_2:77357940-77357959 | None:intergenic | 55.0% | |
! | GTGAGGCACTTGAAGCTGCT+AGG | + | chr3_2:77357940-77357959 | Msa0426760:CDS | 55.0% |
GGAGCTGATAGGCTTCAGAC+TGG | + | chr3_2:77358074-77358093 | Msa0426760:CDS | 55.0% | |
!! | GGGGCTTTTGGAAAGCCACA+AGG | + | chr3_2:77358104-77358123 | Msa0426760:CDS | 55.0% |
TGCTAGAGTGGCTATTGGGC+AGG | + | chr3_2:77358133-77358152 | Msa0426760:CDS | 55.0% | |
CAACAGCCATCATGCTCAGG+AGG | + | chr3_2:77358184-77358203 | Msa0426760:CDS | 55.0% | |
ACCATTGGCCAACCGTCAAC+CGG | + | chr3_2:77358737-77358756 | Msa0426760:CDS | 55.0% | |
GGAAAGCTCTTCCCGGTTGA+CGG | - | chr3_2:77358752-77358771 | None:intergenic | 55.0% | |
GCAGTCAGGAAAGCTCTTCC+CGG | - | chr3_2:77358759-77358778 | None:intergenic | 55.0% | |
CCTCATTACAGCTGGCAGTC+AGG | - | chr3_2:77358773-77358792 | None:intergenic | 55.0% | |
CCTGACTGCCAGCTGTAATG+AGG | + | chr3_2:77358770-77358789 | Msa0426760:CDS | 55.0% | |
CCACGGCAGAAACGTGACTT+TGG | - | chr3_2:77357810-77357829 | None:intergenic | 55.0% | |
CCAAAGTCACGTTTCTGCCG+TGG | + | chr3_2:77357807-77357826 | Msa0426760:CDS | 55.0% | |
AGCAGCTTCAAGTGCCTCAC+TGG | - | chr3_2:77357940-77357959 | None:intergenic | 55.0% | |
! | GTGAGGCACTTGAAGCTGCT+AGG | + | chr3_2:77357940-77357959 | Msa0426760:CDS | 55.0% |
GGAGCTGATAGGCTTCAGAC+TGG | + | chr3_2:77358074-77358093 | Msa0426760:CDS | 55.0% | |
!! | GGGGCTTTTGGAAAGCCACA+AGG | + | chr3_2:77358104-77358123 | Msa0426760:CDS | 55.0% |
TGCTAGAGTGGCTATTGGGC+AGG | + | chr3_2:77358133-77358152 | Msa0426760:CDS | 55.0% | |
CAACAGCCATCATGCTCAGG+AGG | + | chr3_2:77358184-77358203 | Msa0426760:CDS | 55.0% | |
ACCATTGGCCAACCGTCAAC+CGG | + | chr3_2:77358737-77358756 | Msa0426760:CDS | 55.0% | |
GGAAAGCTCTTCCCGGTTGA+CGG | - | chr3_2:77358752-77358771 | None:intergenic | 55.0% | |
GCAGTCAGGAAAGCTCTTCC+CGG | - | chr3_2:77358759-77358778 | None:intergenic | 55.0% | |
CCTCATTACAGCTGGCAGTC+AGG | - | chr3_2:77358773-77358792 | None:intergenic | 55.0% | |
CCTGACTGCCAGCTGTAATG+AGG | + | chr3_2:77358770-77358789 | Msa0426760:CDS | 55.0% | |
GGAGAGCCTCCTGAGCATGA+TGG | - | chr3_2:77358193-77358212 | None:intergenic | 60.0% | |
! | GACGGTTGGCCAATGGTCCA+TGG | - | chr3_2:77358734-77358753 | None:intergenic | 60.0% |
CCATTGGCCAACCGTCAACC+GGG | + | chr3_2:77358738-77358757 | Msa0426760:CDS | 60.0% | |
AGCTCTTCCCGGTTGACGGT+TGG | - | chr3_2:77358748-77358767 | None:intergenic | 60.0% | |
GGAGAGCCTCCTGAGCATGA+TGG | - | chr3_2:77358193-77358212 | None:intergenic | 60.0% | |
! | GACGGTTGGCCAATGGTCCA+TGG | - | chr3_2:77358734-77358753 | None:intergenic | 60.0% |
CCATTGGCCAACCGTCAACC+GGG | + | chr3_2:77358738-77358757 | Msa0426760:CDS | 60.0% | |
AGCTCTTCCCGGTTGACGGT+TGG | - | chr3_2:77358748-77358767 | None:intergenic | 60.0% | |
! | CCCGGTTGACGGTTGGCCAA+TGG | - | chr3_2:77358741-77358760 | None:intergenic | 65.0% |
! | CCCGGTTGACGGTTGGCCAA+TGG | - | chr3_2:77358741-77358760 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 77357747 | 77359244 | 77357747 | ID=Msa0426760;Name=Msa0426760 |
chr3_2 | mRNA | 77357747 | 77359244 | 77357747 | ID=Msa0426760-mRNA-1;Parent=Msa0426760;Name=Msa0426760-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.66|1|1|1|3|447|226 |
chr3_2 | exon | 77357747 | 77358267 | 77357747 | ID=Msa0426760-mRNA-1:exon:20126;Parent=Msa0426760-mRNA-1 |
chr3_2 | exon | 77358410 | 77358491 | 77358410 | ID=Msa0426760-mRNA-1:exon:20127;Parent=Msa0426760-mRNA-1 |
chr3_2 | exon | 77358720 | 77359244 | 77358720 | ID=Msa0426760-mRNA-1:exon:20128;Parent=Msa0426760-mRNA-1 |
chr3_2 | CDS | 77357747 | 77358267 | 77357747 | ID=Msa0426760-mRNA-1:cds;Parent=Msa0426760-mRNA-1 |
chr3_2 | CDS | 77358410 | 77358491 | 77358410 | ID=Msa0426760-mRNA-1:cds;Parent=Msa0426760-mRNA-1 |
chr3_2 | CDS | 77358720 | 77358797 | 77358720 | ID=Msa0426760-mRNA-1:cds;Parent=Msa0426760-mRNA-1 |
chr3_2 | three_prime_UTR | 77358798 | 77359244 | 77358798 | ID=Msa0426760-mRNA-1:three_prime_utr;Parent=Msa0426760-mRNA-1 |
Gene Sequence |
Protein sequence |