AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0426760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0426760 MtrunA17_Chr3g0128921 99.541 218 1 0 8 225 5 222 6.39e-164 451
Msa0426760 MtrunA17_Chr2g0325151 99.087 219 2 0 8 226 5 223 1.28e-163 450
Msa0426760 MtrunA17_Chr3g0108371 92.523 214 16 0 8 221 5 218 9.36e-149 412
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0426760 AT1G26910.1 89.252 214 23 0 8 221 5 218 2.67e-144 402
Msa0426760 AT1G14320.1 88.785 214 24 0 8 221 5 218 5.31e-143 398
Msa0426760 AT1G66580.1 87.442 215 27 0 8 222 5 219 3.79e-141 394
Msa0426760 AT1G26910.2 88.398 181 21 0 41 221 1 181 2.27e-118 335
Msa0426760 AT1G14320.2 77.660 94 19 1 130 221 31 124 1.50e-46 150
Msa0426760 AT1G14320.2 97.436 39 1 0 41 79 1 39 2.03e-20 84.0

Find 84 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATAGAGATTTGGTTTATT+TGG 0.151129 3_2:+77359010 Msa0426760:three_prime_UTR
GGTTCAATTTCTTTGAAAAT+TGG 0.171559 3_2:+77359110 Msa0426760:three_prime_UTR
TTCTCACATTAAATACTAAA+AGG 0.270230 3_2:-77358977 None:intergenic
ATGCTTTCCACTTGAGAGTT+AGG 0.278634 3_2:+77358003 Msa0426760:CDS
TTCATCCATTCCATGTTCTT+AGG 0.295164 3_2:+77358027 Msa0426760:CDS
ACTGGTATGAGAGGGGCTTT+TGG 0.309142 3_2:+77358092 Msa0426760:CDS
CTTTGACATGTATTTGTTGC+AGG 0.312261 3_2:-77357967 None:intergenic
CCAAATAAACCAAATCTCTA+TGG 0.318302 3_2:-77359010 None:intergenic
CAGAAACGTGACTTTGGATA+TGG 0.332410 3_2:-77357801 None:intergenic
ATTTGCAAGTGAAGTAGATT+TGG 0.351457 3_2:-77359058 None:intergenic
ACCATTGGCCAACCGTCAAC+CGG 0.355147 3_2:+77358737 Msa0426760:CDS
GTTTCCTTTCTGTGTTCATC+TGG 0.355959 3_2:+77357890 Msa0426760:CDS
CTGTGTTCATCTGGTCAGTT+GGG 0.370061 3_2:+77357899 Msa0426760:CDS
ATTTGACGGTAACACCTTGC+AGG 0.370519 3_2:-77357768 None:intergenic
ATTCGGTGATTCTCACGAAA+TGG 0.374153 3_2:+77359088 Msa0426760:three_prime_UTR
AACATCATAAATCCTGATCT+TGG 0.385450 3_2:-77357841 None:intergenic
TCTGTGTTCATCTGGTCAGT+TGG 0.393251 3_2:+77357898 Msa0426760:CDS
ATCAGGCATAATTCTGTTCT+CGG 0.407151 3_2:-77358454 None:intergenic
TTTGTGCTAGAGTGGCTATT+GGG 0.420431 3_2:+77358129 Msa0426760:CDS
GCAGTCAGGAAAGCTCTTCC+CGG 0.421225 3_2:-77358756 None:intergenic
TTTCATGTGCGGGAGCTGAT+AGG 0.426261 3_2:+77358063 Msa0426760:CDS
TTGCAGCTTCTTGGATGCCA+TGG 0.430564 3_2:+77358714 Msa0426760:intron
TGCTAGAGTGGCTATTGGGC+AGG 0.435686 3_2:+77358133 Msa0426760:CDS
TGCTTTCCACTTGAGAGTTA+GGG 0.441216 3_2:+77358004 Msa0426760:CDS
GGAAAGCTCTTCCCGGTTGA+CGG 0.444695 3_2:-77358749 None:intergenic
GTTTGTGCTAGAGTGGCTAT+TGG 0.453432 3_2:+77358128 Msa0426760:CDS
CATGTCAAAGTTTGCAGGAA+AGG 0.453517 3_2:+77357980 Msa0426760:CDS
AGAATCAAGGGCAAAGAGAT+TGG 0.454933 3_2:-77359219 None:intergenic
TTCGGTGATTCTCACGAAAT+GGG 0.455075 3_2:+77359089 Msa0426760:three_prime_UTR
ACCTTAGCATTCACACCATC+AGG 0.455380 3_2:-77358471 None:intergenic
AGCAGCTTCAAGTGCCTCAC+TGG 0.456981 3_2:-77357937 None:intergenic
ACTTGCAAATCTCACTGATT+CGG 0.458990 3_2:+77359071 Msa0426760:three_prime_UTR
CCCGGTTGACGGTTGGCCAA+TGG 0.460642 3_2:-77358738 None:intergenic
ATGGCTTGTTCTTAATTTGA+CGG 0.461186 3_2:-77357782 None:intergenic
CCACGGCAGAAACGTGACTT+TGG 0.463875 3_2:-77357807 None:intergenic
CGTGCTAAGTTTAAGTTCCC+TGG 0.464822 3_2:+77358215 Msa0426760:CDS
CCTCATTACAGCTGGCAGTC+AGG 0.466220 3_2:-77358770 None:intergenic
AAATACATGTCAAAGTTTGC+AGG 0.470834 3_2:+77357975 Msa0426760:CDS
TTGAGGAAAAGAAAGAATCA+AGG 0.477618 3_2:-77359232 None:intergenic
ACATCATAAATCCTGATCTT+GGG 0.479634 3_2:-77357840 None:intergenic
TCTTCTTTCTGTTCGTTGCA+AGG 0.480717 3_2:+77358157 Msa0426760:CDS
TAAATCCTGATCTTGGGATC+AGG 0.483079 3_2:-77357834 None:intergenic
CTCAAGGTCGCTCTTGCAAA+CGG 0.488436 3_2:-77358909 None:intergenic
TGCCAGCTGTAATGAGGCTT+AGG 0.494501 3_2:+77358776 Msa0426760:CDS
ATGAGTAAGTAAGAAAAGTT+CGG 0.495313 3_2:-77359035 None:intergenic
TCTTGGATGCCATGGACCAT+TGG 0.496449 3_2:+77358722 Msa0426760:CDS
CCTGACTGCCAGCTGTAATG+AGG 0.497594 3_2:+77358770 Msa0426760:CDS
ATTTCTTTGAAAATTGGTGA+TGG 0.500390 3_2:+77359116 Msa0426760:three_prime_UTR
AACAAGATGCTTTCATGTGC+GGG 0.504380 3_2:+77358053 Msa0426760:CDS
AGCTCTTCCCGGTTGACGGT+TGG 0.505552 3_2:-77358745 None:intergenic
GTGTTCCTGATCCCAAGATC+AGG 0.511204 3_2:+77357829 Msa0426760:CDS
GTCAAAAGATCATTGTTAGC+AGG 0.521890 3_2:+77358240 Msa0426760:CDS
CAACAACAGCCATCATGCTC+AGG 0.528429 3_2:+77358181 Msa0426760:CDS
AGATCATTGTTAGCAGGAAG+TGG 0.531763 3_2:+77358246 Msa0426760:CDS
AGCCTAAGCCTCATTACAGC+TGG 0.535691 3_2:-77358778 None:intergenic
GACGGTTGGCCAATGGTCCA+TGG 0.540431 3_2:-77358731 None:intergenic
AAGATCAGGATTTATGATGT+TGG 0.540872 3_2:+77357843 Msa0426760:CDS
ACAAGGTGTTTGTGCTAGAG+TGG 0.563189 3_2:+77358121 Msa0426760:CDS
GGCTTCAGACTGGTATGAGA+GGG 0.563519 3_2:+77358084 Msa0426760:CDS
CCATTGGCCAACCGTCAACC+GGG 0.565470 3_2:+77358738 Msa0426760:CDS
ATACTAAAAGGAGAAATAGC+AGG 0.569566 3_2:-77358965 None:intergenic
TCATCTGGTCAGTTGGGAGA+AGG 0.572889 3_2:+77357905 Msa0426760:CDS
GGAGAGCCTCCTGAGCATGA+TGG 0.573200 3_2:-77358190 None:intergenic
CTGACCAGATGAACACAGAA+AGG 0.573863 3_2:-77357894 None:intergenic
TGAGGAAAAGAAAGAATCAA+GGG 0.574614 3_2:-77359231 None:intergenic
GATGAACCCTAACTCTCAAG+TGG 0.578245 3_2:-77358010 None:intergenic
CCAAAGTCACGTTTCTGCCG+TGG 0.586608 3_2:+77357807 Msa0426760:CDS
TAAGATTAATCATCAACTCA+AGG 0.592706 3_2:-77358925 None:intergenic
GTGAGGCACTTGAAGCTGCT+AGG 0.594487 3_2:+77357940 Msa0426760:CDS
CAACAAGATGCTTTCATGTG+CGG 0.597854 3_2:+77358052 Msa0426760:CDS
GATGTTGGCATGAAGAAGAA+AGG 0.601420 3_2:+77357858 Msa0426760:CDS
TTGATCCTAAGAACATGGAA+TGG 0.602625 3_2:-77358032 None:intergenic
TTAACTTCAGATAATCAGCT+CGG 0.606395 3_2:-77358428 None:intergenic
AGGCTTCAGACTGGTATGAG+AGG 0.607126 3_2:+77358083 Msa0426760:CDS
CAACAGCCATCATGCTCAGG+AGG 0.612805 3_2:+77358184 Msa0426760:CDS
TCTTGTTGATCCTAAGAACA+TGG 0.613434 3_2:-77358037 None:intergenic
GCCTGATGGTGTGAATGCTA+AGG 0.639133 3_2:+77358470 Msa0426760:CDS
GAGAACAGAATTATGCCTGA+TGG 0.652808 3_2:+77358456 Msa0426760:CDS
GGAGCTGATAGGCTTCAGAC+TGG 0.660599 3_2:+77358074 Msa0426760:CDS
ACTCTAGCACAAACACCTTG+TGG 0.661898 3_2:-77358119 None:intergenic
GCTTCAGACTGGTATGAGAG+GGG 0.693964 3_2:+77358085 Msa0426760:CDS
GAAGGAAAATGTGTCCAGTG+AGG 0.706232 3_2:+77357923 Msa0426760:CDS
GGAACTTAAACTTAGCACGA+CGG 0.721521 3_2:-77358211 None:intergenic
TCTTGGGATCAGGAACACCA+CGG 0.737353 3_2:-77357824 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATCTTATATTTTGTTA+TGG + chr3_2:77358938-77358957 Msa0426760:three_prime_UTR 10.0%
!!! ATTAATCTTATATTTTGTTA+TGG + chr3_2:77358938-77358957 Msa0426760:three_prime_UTR 10.0%
!! TATTTAATGTGAGAAAAAAA+AGG + chr3_2:77358985-77359004 Msa0426760:three_prime_UTR 15.0%
!! TATTTAATGTGAGAAAAAAA+AGG + chr3_2:77358985-77359004 Msa0426760:three_prime_UTR 15.0%
!! CAATGAATATAGTTAAAACA+TGG - chr3_2:77358369-77358388 None:intergenic 20.0%
!!! ATCTTAGTTTGGAATATATT+GGG + chr3_2:77358581-77358600 Msa0426760:intron 20.0%
!!! AAAAAGAACTTTAAGTTGAA+AGG - chr3_2:77358688-77358707 None:intergenic 20.0%
!! TTCTCACATTAAATACTAAA+AGG - chr3_2:77358980-77358999 None:intergenic 20.0%
!! CAATGAATATAGTTAAAACA+TGG - chr3_2:77358369-77358388 None:intergenic 20.0%
!!! ATCTTAGTTTGGAATATATT+GGG + chr3_2:77358581-77358600 Msa0426760:intron 20.0%
!!! AAAAAGAACTTTAAGTTGAA+AGG - chr3_2:77358688-77358707 None:intergenic 20.0%
!! TTCTCACATTAAATACTAAA+AGG - chr3_2:77358980-77358999 None:intergenic 20.0%
!! AAAACATGGATTGAAGTAAA+AGG - chr3_2:77358355-77358374 None:intergenic 25.0%
!!! TTGTTTTAAATGCTTCTTCA+GGG + chr3_2:77358389-77358408 Msa0426760:intron 25.0%
! TAACTTGAATCATCTTAGTT+TGG + chr3_2:77358570-77358589 Msa0426760:intron 25.0%
!! CATCTTAGTTTGGAATATAT+TGG + chr3_2:77358580-77358599 Msa0426760:intron 25.0%
!! TCTTAGTTTGGAATATATTG+GGG + chr3_2:77358582-77358601 Msa0426760:intron 25.0%
!!! GTTAGTTTTGTCTAAGTAAT+CGG + chr3_2:77358662-77358681 Msa0426760:intron 25.0%
! TAAGATTAATCATCAACTCA+AGG - chr3_2:77358928-77358947 None:intergenic 25.0%
! ATGAGTAAGTAAGAAAAGTT+CGG - chr3_2:77359038-77359057 None:intergenic 25.0%
!! GGTTCAATTTCTTTGAAAAT+TGG + chr3_2:77359110-77359129 Msa0426760:three_prime_UTR 25.0%
!! ATTTCTTTGAAAATTGGTGA+TGG + chr3_2:77359116-77359135 Msa0426760:three_prime_UTR 25.0%
!! AAAACATGGATTGAAGTAAA+AGG - chr3_2:77358355-77358374 None:intergenic 25.0%
!!! TTGTTTTAAATGCTTCTTCA+GGG + chr3_2:77358389-77358408 Msa0426760:intron 25.0%
! TAACTTGAATCATCTTAGTT+TGG + chr3_2:77358570-77358589 Msa0426760:intron 25.0%
!! CATCTTAGTTTGGAATATAT+TGG + chr3_2:77358580-77358599 Msa0426760:intron 25.0%
!! TCTTAGTTTGGAATATATTG+GGG + chr3_2:77358582-77358601 Msa0426760:intron 25.0%
!!! GTTAGTTTTGTCTAAGTAAT+CGG + chr3_2:77358662-77358681 Msa0426760:intron 25.0%
! TAAGATTAATCATCAACTCA+AGG - chr3_2:77358928-77358947 None:intergenic 25.0%
! ATGAGTAAGTAAGAAAAGTT+CGG - chr3_2:77359038-77359057 None:intergenic 25.0%
!! GGTTCAATTTCTTTGAAAAT+TGG + chr3_2:77359110-77359129 Msa0426760:three_prime_UTR 25.0%
!! ATTTCTTTGAAAATTGGTGA+TGG + chr3_2:77359116-77359135 Msa0426760:three_prime_UTR 25.0%
!! TTTTATTTATAGGACCTGCA+AGG + chr3_2:77357754-77357773 Msa0426760:CDS 30.0%
!! ATGGCTTGTTCTTAATTTGA+CGG - chr3_2:77357785-77357804 None:intergenic 30.0%
ACATCATAAATCCTGATCTT+GGG - chr3_2:77357843-77357862 None:intergenic 30.0%
AACATCATAAATCCTGATCT+TGG - chr3_2:77357844-77357863 None:intergenic 30.0%
AAGATCAGGATTTATGATGT+TGG + chr3_2:77357843-77357862 Msa0426760:CDS 30.0%
AAATACATGTCAAAGTTTGC+AGG + chr3_2:77357975-77357994 Msa0426760:CDS 30.0%
! TGCTAACAATGATCTTTTGA+CGG - chr3_2:77358241-77358260 None:intergenic 30.0%
GTGGTAAGTATTTGTTCTAT+TGG + chr3_2:77358265-77358284 Msa0426760:intron 30.0%
!!! GTTGTTTTAAATGCTTCTTC+AGG + chr3_2:77358388-77358407 Msa0426760:intron 30.0%
!! TGTTTTAAATGCTTCTTCAG+GGG + chr3_2:77358390-77358409 Msa0426760:intron 30.0%
TTAACTTCAGATAATCAGCT+CGG - chr3_2:77358431-77358450 None:intergenic 30.0%
AGAAACAAATATCCAACATG+CGG - chr3_2:77358526-77358545 None:intergenic 30.0%
AATCTGTTTGAACACTCAAT+TGG + chr3_2:77358627-77358646 Msa0426760:intron 30.0%
ATACTAAAAGGAGAAATAGC+AGG - chr3_2:77358968-77358987 None:intergenic 30.0%
AAAAAGGTTCCATAGAGATT+TGG + chr3_2:77359001-77359020 Msa0426760:three_prime_UTR 30.0%
CCAAATAAACCAAATCTCTA+TGG - chr3_2:77359013-77359032 None:intergenic 30.0%
! CCATAGAGATTTGGTTTATT+TGG + chr3_2:77359010-77359029 Msa0426760:three_prime_UTR 30.0%
ATTTGCAAGTGAAGTAGATT+TGG - chr3_2:77359061-77359080 None:intergenic 30.0%
!! TTTTATTTATAGGACCTGCA+AGG + chr3_2:77357754-77357773 Msa0426760:CDS 30.0%
!! ATGGCTTGTTCTTAATTTGA+CGG - chr3_2:77357785-77357804 None:intergenic 30.0%
ACATCATAAATCCTGATCTT+GGG - chr3_2:77357843-77357862 None:intergenic 30.0%
AACATCATAAATCCTGATCT+TGG - chr3_2:77357844-77357863 None:intergenic 30.0%
AAGATCAGGATTTATGATGT+TGG + chr3_2:77357843-77357862 Msa0426760:CDS 30.0%
AAATACATGTCAAAGTTTGC+AGG + chr3_2:77357975-77357994 Msa0426760:CDS 30.0%
! TGCTAACAATGATCTTTTGA+CGG - chr3_2:77358241-77358260 None:intergenic 30.0%
GTGGTAAGTATTTGTTCTAT+TGG + chr3_2:77358265-77358284 Msa0426760:intron 30.0%
!!! GTTGTTTTAAATGCTTCTTC+AGG + chr3_2:77358388-77358407 Msa0426760:intron 30.0%
!! TGTTTTAAATGCTTCTTCAG+GGG + chr3_2:77358390-77358409 Msa0426760:intron 30.0%
TTAACTTCAGATAATCAGCT+CGG - chr3_2:77358431-77358450 None:intergenic 30.0%
AGAAACAAATATCCAACATG+CGG - chr3_2:77358526-77358545 None:intergenic 30.0%
AATCTGTTTGAACACTCAAT+TGG + chr3_2:77358627-77358646 Msa0426760:intron 30.0%
ATACTAAAAGGAGAAATAGC+AGG - chr3_2:77358968-77358987 None:intergenic 30.0%
AAAAAGGTTCCATAGAGATT+TGG + chr3_2:77359001-77359020 Msa0426760:three_prime_UTR 30.0%
CCAAATAAACCAAATCTCTA+TGG - chr3_2:77359013-77359032 None:intergenic 30.0%
! CCATAGAGATTTGGTTTATT+TGG + chr3_2:77359010-77359029 Msa0426760:three_prime_UTR 30.0%
ATTTGCAAGTGAAGTAGATT+TGG - chr3_2:77359061-77359080 None:intergenic 30.0%
! CTTTGACATGTATTTGTTGC+AGG - chr3_2:77357970-77357989 None:intergenic 35.0%
TTCATCCATTCCATGTTCTT+AGG + chr3_2:77358027-77358046 Msa0426760:CDS 35.0%
TTGATCCTAAGAACATGGAA+TGG - chr3_2:77358035-77358054 None:intergenic 35.0%
TCTTGTTGATCCTAAGAACA+TGG - chr3_2:77358040-77358059 None:intergenic 35.0%
GTCAAAAGATCATTGTTAGC+AGG + chr3_2:77358240-77358259 Msa0426760:CDS 35.0%
GTTCTATTGGCAGATTTGAA+TGG + chr3_2:77358278-77358297 Msa0426760:intron 35.0%
GCAAATCTACAAAGGATACA+AGG - chr3_2:77358314-77358333 None:intergenic 35.0%
TCCTTTGTAGATTTGCAGTA+TGG + chr3_2:77358318-77358337 Msa0426760:intron 35.0%
CCTTTGTAGATTTGCAGTAT+GGG + chr3_2:77358319-77358338 Msa0426760:intron 35.0%
ATCAGGCATAATTCTGTTCT+CGG - chr3_2:77358457-77358476 None:intergenic 35.0%
! GCAAAAAGTATGTCTTTAGC+AGG - chr3_2:77358550-77358569 None:intergenic 35.0%
! TTTGTGATTTTGCAGCTTCT+TGG + chr3_2:77358705-77358724 Msa0426760:intron 35.0%
! ACTTGCAAATCTCACTGATT+CGG + chr3_2:77359071-77359090 Msa0426760:three_prime_UTR 35.0%
! CTTTGACATGTATTTGTTGC+AGG - chr3_2:77357970-77357989 None:intergenic 35.0%
TTCATCCATTCCATGTTCTT+AGG + chr3_2:77358027-77358046 Msa0426760:CDS 35.0%
TTGATCCTAAGAACATGGAA+TGG - chr3_2:77358035-77358054 None:intergenic 35.0%
TCTTGTTGATCCTAAGAACA+TGG - chr3_2:77358040-77358059 None:intergenic 35.0%
GTCAAAAGATCATTGTTAGC+AGG + chr3_2:77358240-77358259 Msa0426760:CDS 35.0%
GTTCTATTGGCAGATTTGAA+TGG + chr3_2:77358278-77358297 Msa0426760:intron 35.0%
GCAAATCTACAAAGGATACA+AGG - chr3_2:77358314-77358333 None:intergenic 35.0%
TCCTTTGTAGATTTGCAGTA+TGG + chr3_2:77358318-77358337 Msa0426760:intron 35.0%
CCTTTGTAGATTTGCAGTAT+GGG + chr3_2:77358319-77358338 Msa0426760:intron 35.0%
ATCAGGCATAATTCTGTTCT+CGG - chr3_2:77358457-77358476 None:intergenic 35.0%
! GCAAAAAGTATGTCTTTAGC+AGG - chr3_2:77358550-77358569 None:intergenic 35.0%
! TTTGTGATTTTGCAGCTTCT+TGG + chr3_2:77358705-77358724 Msa0426760:intron 35.0%
! ACTTGCAAATCTCACTGATT+CGG + chr3_2:77359071-77359090 Msa0426760:three_prime_UTR 35.0%
CAGAAACGTGACTTTGGATA+TGG - chr3_2:77357804-77357823 None:intergenic 40.0%
TAAATCCTGATCTTGGGATC+AGG - chr3_2:77357837-77357856 None:intergenic 40.0%
GATGTTGGCATGAAGAAGAA+AGG + chr3_2:77357858-77357877 Msa0426760:CDS 40.0%
GTTTCCTTTCTGTGTTCATC+TGG + chr3_2:77357890-77357909 Msa0426760:CDS 40.0%
CATGTCAAAGTTTGCAGGAA+AGG + chr3_2:77357980-77357999 Msa0426760:CDS 40.0%
ATGCTTTCCACTTGAGAGTT+AGG + chr3_2:77358003-77358022 Msa0426760:CDS 40.0%
TGCTTTCCACTTGAGAGTTA+GGG + chr3_2:77358004-77358023 Msa0426760:CDS 40.0%
CAACAAGATGCTTTCATGTG+CGG + chr3_2:77358052-77358071 Msa0426760:CDS 40.0%
AACAAGATGCTTTCATGTGC+GGG + chr3_2:77358053-77358072 Msa0426760:CDS 40.0%
TTTGTGCTAGAGTGGCTATT+GGG + chr3_2:77358129-77358148 Msa0426760:CDS 40.0%
TCTTCTTTCTGTTCGTTGCA+AGG + chr3_2:77358157-77358176 Msa0426760:CDS 40.0%
GGAACTTAAACTTAGCACGA+CGG - chr3_2:77358214-77358233 None:intergenic 40.0%
AGATCATTGTTAGCAGGAAG+TGG + chr3_2:77358246-77358265 Msa0426760:CDS 40.0%
CCCATACTGCAAATCTACAA+AGG - chr3_2:77358322-77358341 None:intergenic 40.0%
!! TTTGCAGTATGGGAGTACTT+TGG + chr3_2:77358329-77358348 Msa0426760:intron 40.0%
GAGAACAGAATTATGCCTGA+TGG + chr3_2:77358456-77358475 Msa0426760:CDS 40.0%
GAATTCATTGTACCGCATGT+TGG + chr3_2:77358511-77358530 Msa0426760:intron 40.0%
! ATTCGGTGATTCTCACGAAA+TGG + chr3_2:77359088-77359107 Msa0426760:three_prime_UTR 40.0%
TTCGGTGATTCTCACGAAAT+GGG + chr3_2:77359089-77359108 Msa0426760:three_prime_UTR 40.0%
AGAATCAAGGGCAAAGAGAT+TGG - chr3_2:77359222-77359241 None:intergenic 40.0%
CAGAAACGTGACTTTGGATA+TGG - chr3_2:77357804-77357823 None:intergenic 40.0%
TAAATCCTGATCTTGGGATC+AGG - chr3_2:77357837-77357856 None:intergenic 40.0%
GATGTTGGCATGAAGAAGAA+AGG + chr3_2:77357858-77357877 Msa0426760:CDS 40.0%
GTTTCCTTTCTGTGTTCATC+TGG + chr3_2:77357890-77357909 Msa0426760:CDS 40.0%
CATGTCAAAGTTTGCAGGAA+AGG + chr3_2:77357980-77357999 Msa0426760:CDS 40.0%
ATGCTTTCCACTTGAGAGTT+AGG + chr3_2:77358003-77358022 Msa0426760:CDS 40.0%
TGCTTTCCACTTGAGAGTTA+GGG + chr3_2:77358004-77358023 Msa0426760:CDS 40.0%
CAACAAGATGCTTTCATGTG+CGG + chr3_2:77358052-77358071 Msa0426760:CDS 40.0%
AACAAGATGCTTTCATGTGC+GGG + chr3_2:77358053-77358072 Msa0426760:CDS 40.0%
TTTGTGCTAGAGTGGCTATT+GGG + chr3_2:77358129-77358148 Msa0426760:CDS 40.0%
TCTTCTTTCTGTTCGTTGCA+AGG + chr3_2:77358157-77358176 Msa0426760:CDS 40.0%
GGAACTTAAACTTAGCACGA+CGG - chr3_2:77358214-77358233 None:intergenic 40.0%
AGATCATTGTTAGCAGGAAG+TGG + chr3_2:77358246-77358265 Msa0426760:CDS 40.0%
CCCATACTGCAAATCTACAA+AGG - chr3_2:77358322-77358341 None:intergenic 40.0%
!! TTTGCAGTATGGGAGTACTT+TGG + chr3_2:77358329-77358348 Msa0426760:intron 40.0%
GAGAACAGAATTATGCCTGA+TGG + chr3_2:77358456-77358475 Msa0426760:CDS 40.0%
GAATTCATTGTACCGCATGT+TGG + chr3_2:77358511-77358530 Msa0426760:intron 40.0%
! ATTCGGTGATTCTCACGAAA+TGG + chr3_2:77359088-77359107 Msa0426760:three_prime_UTR 40.0%
TTCGGTGATTCTCACGAAAT+GGG + chr3_2:77359089-77359108 Msa0426760:three_prime_UTR 40.0%
AGAATCAAGGGCAAAGAGAT+TGG - chr3_2:77359222-77359241 None:intergenic 40.0%
ATTTGACGGTAACACCTTGC+AGG - chr3_2:77357771-77357790 None:intergenic 45.0%
CTGACCAGATGAACACAGAA+AGG - chr3_2:77357897-77357916 None:intergenic 45.0%
TCTGTGTTCATCTGGTCAGT+TGG + chr3_2:77357898-77357917 Msa0426760:CDS 45.0%
CTGTGTTCATCTGGTCAGTT+GGG + chr3_2:77357899-77357918 Msa0426760:CDS 45.0%
GAAGGAAAATGTGTCCAGTG+AGG + chr3_2:77357923-77357942 Msa0426760:CDS 45.0%
GATGAACCCTAACTCTCAAG+TGG - chr3_2:77358013-77358032 None:intergenic 45.0%
ACTCTAGCACAAACACCTTG+TGG - chr3_2:77358122-77358141 None:intergenic 45.0%
! ACAAGGTGTTTGTGCTAGAG+TGG + chr3_2:77358121-77358140 Msa0426760:CDS 45.0%
GTTTGTGCTAGAGTGGCTAT+TGG + chr3_2:77358128-77358147 Msa0426760:CDS 45.0%
! CGTGCTAAGTTTAAGTTCCC+TGG + chr3_2:77358215-77358234 Msa0426760:CDS 45.0%
! CAATGATCTTTTGACGGCCA+GGG - chr3_2:77358235-77358254 None:intergenic 45.0%
! ACAATGATCTTTTGACGGCC+AGG - chr3_2:77358236-77358255 None:intergenic 45.0%
ACCTTAGCATTCACACCATC+AGG - chr3_2:77358474-77358493 None:intergenic 45.0%
ATTTGACGGTAACACCTTGC+AGG - chr3_2:77357771-77357790 None:intergenic 45.0%
CTGACCAGATGAACACAGAA+AGG - chr3_2:77357897-77357916 None:intergenic 45.0%
TCTGTGTTCATCTGGTCAGT+TGG + chr3_2:77357898-77357917 Msa0426760:CDS 45.0%
CTGTGTTCATCTGGTCAGTT+GGG + chr3_2:77357899-77357918 Msa0426760:CDS 45.0%
GAAGGAAAATGTGTCCAGTG+AGG + chr3_2:77357923-77357942 Msa0426760:CDS 45.0%
GATGAACCCTAACTCTCAAG+TGG - chr3_2:77358013-77358032 None:intergenic 45.0%
ACTCTAGCACAAACACCTTG+TGG - chr3_2:77358122-77358141 None:intergenic 45.0%
! ACAAGGTGTTTGTGCTAGAG+TGG + chr3_2:77358121-77358140 Msa0426760:CDS 45.0%
GTTTGTGCTAGAGTGGCTAT+TGG + chr3_2:77358128-77358147 Msa0426760:CDS 45.0%
! CGTGCTAAGTTTAAGTTCCC+TGG + chr3_2:77358215-77358234 Msa0426760:CDS 45.0%
! CAATGATCTTTTGACGGCCA+GGG - chr3_2:77358235-77358254 None:intergenic 45.0%
! ACAATGATCTTTTGACGGCC+AGG - chr3_2:77358236-77358255 None:intergenic 45.0%
ACCTTAGCATTCACACCATC+AGG - chr3_2:77358474-77358493 None:intergenic 45.0%
TCTTGGGATCAGGAACACCA+CGG - chr3_2:77357827-77357846 None:intergenic 50.0%
GTGTTCCTGATCCCAAGATC+AGG + chr3_2:77357829-77357848 Msa0426760:CDS 50.0%
TCATCTGGTCAGTTGGGAGA+AGG + chr3_2:77357905-77357924 Msa0426760:CDS 50.0%
TTTCATGTGCGGGAGCTGAT+AGG + chr3_2:77358063-77358082 Msa0426760:CDS 50.0%
AGGCTTCAGACTGGTATGAG+AGG + chr3_2:77358083-77358102 Msa0426760:CDS 50.0%
GGCTTCAGACTGGTATGAGA+GGG + chr3_2:77358084-77358103 Msa0426760:CDS 50.0%
GCTTCAGACTGGTATGAGAG+GGG + chr3_2:77358085-77358104 Msa0426760:CDS 50.0%
! ACTGGTATGAGAGGGGCTTT+TGG + chr3_2:77358092-77358111 Msa0426760:CDS 50.0%
CAACAACAGCCATCATGCTC+AGG + chr3_2:77358181-77358200 Msa0426760:CDS 50.0%
! GCCTGATGGTGTGAATGCTA+AGG + chr3_2:77358470-77358489 Msa0426760:CDS 50.0%
TTGCAGCTTCTTGGATGCCA+TGG + chr3_2:77358714-77358733 Msa0426760:intron 50.0%
TCTTGGATGCCATGGACCAT+TGG + chr3_2:77358722-77358741 Msa0426760:CDS 50.0%
TGCCAGCTGTAATGAGGCTT+AGG + chr3_2:77358776-77358795 Msa0426760:CDS 50.0%
AGCCTAAGCCTCATTACAGC+TGG - chr3_2:77358781-77358800 None:intergenic 50.0%
CTCAAGGTCGCTCTTGCAAA+CGG - chr3_2:77358912-77358931 None:intergenic 50.0%
TCTTGGGATCAGGAACACCA+CGG - chr3_2:77357827-77357846 None:intergenic 50.0%
GTGTTCCTGATCCCAAGATC+AGG + chr3_2:77357829-77357848 Msa0426760:CDS 50.0%
TCATCTGGTCAGTTGGGAGA+AGG + chr3_2:77357905-77357924 Msa0426760:CDS 50.0%
TTTCATGTGCGGGAGCTGAT+AGG + chr3_2:77358063-77358082 Msa0426760:CDS 50.0%
AGGCTTCAGACTGGTATGAG+AGG + chr3_2:77358083-77358102 Msa0426760:CDS 50.0%
GGCTTCAGACTGGTATGAGA+GGG + chr3_2:77358084-77358103 Msa0426760:CDS 50.0%
GCTTCAGACTGGTATGAGAG+GGG + chr3_2:77358085-77358104 Msa0426760:CDS 50.0%
! ACTGGTATGAGAGGGGCTTT+TGG + chr3_2:77358092-77358111 Msa0426760:CDS 50.0%
CAACAACAGCCATCATGCTC+AGG + chr3_2:77358181-77358200 Msa0426760:CDS 50.0%
! GCCTGATGGTGTGAATGCTA+AGG + chr3_2:77358470-77358489 Msa0426760:CDS 50.0%
TTGCAGCTTCTTGGATGCCA+TGG + chr3_2:77358714-77358733 Msa0426760:intron 50.0%
TCTTGGATGCCATGGACCAT+TGG + chr3_2:77358722-77358741 Msa0426760:CDS 50.0%
TGCCAGCTGTAATGAGGCTT+AGG + chr3_2:77358776-77358795 Msa0426760:CDS 50.0%
AGCCTAAGCCTCATTACAGC+TGG - chr3_2:77358781-77358800 None:intergenic 50.0%
CTCAAGGTCGCTCTTGCAAA+CGG - chr3_2:77358912-77358931 None:intergenic 50.0%
CCACGGCAGAAACGTGACTT+TGG - chr3_2:77357810-77357829 None:intergenic 55.0%
CCAAAGTCACGTTTCTGCCG+TGG + chr3_2:77357807-77357826 Msa0426760:CDS 55.0%
AGCAGCTTCAAGTGCCTCAC+TGG - chr3_2:77357940-77357959 None:intergenic 55.0%
! GTGAGGCACTTGAAGCTGCT+AGG + chr3_2:77357940-77357959 Msa0426760:CDS 55.0%
GGAGCTGATAGGCTTCAGAC+TGG + chr3_2:77358074-77358093 Msa0426760:CDS 55.0%
!! GGGGCTTTTGGAAAGCCACA+AGG + chr3_2:77358104-77358123 Msa0426760:CDS 55.0%
TGCTAGAGTGGCTATTGGGC+AGG + chr3_2:77358133-77358152 Msa0426760:CDS 55.0%
CAACAGCCATCATGCTCAGG+AGG + chr3_2:77358184-77358203 Msa0426760:CDS 55.0%
ACCATTGGCCAACCGTCAAC+CGG + chr3_2:77358737-77358756 Msa0426760:CDS 55.0%
GGAAAGCTCTTCCCGGTTGA+CGG - chr3_2:77358752-77358771 None:intergenic 55.0%
GCAGTCAGGAAAGCTCTTCC+CGG - chr3_2:77358759-77358778 None:intergenic 55.0%
CCTCATTACAGCTGGCAGTC+AGG - chr3_2:77358773-77358792 None:intergenic 55.0%
CCTGACTGCCAGCTGTAATG+AGG + chr3_2:77358770-77358789 Msa0426760:CDS 55.0%
CCACGGCAGAAACGTGACTT+TGG - chr3_2:77357810-77357829 None:intergenic 55.0%
CCAAAGTCACGTTTCTGCCG+TGG + chr3_2:77357807-77357826 Msa0426760:CDS 55.0%
AGCAGCTTCAAGTGCCTCAC+TGG - chr3_2:77357940-77357959 None:intergenic 55.0%
! GTGAGGCACTTGAAGCTGCT+AGG + chr3_2:77357940-77357959 Msa0426760:CDS 55.0%
GGAGCTGATAGGCTTCAGAC+TGG + chr3_2:77358074-77358093 Msa0426760:CDS 55.0%
!! GGGGCTTTTGGAAAGCCACA+AGG + chr3_2:77358104-77358123 Msa0426760:CDS 55.0%
TGCTAGAGTGGCTATTGGGC+AGG + chr3_2:77358133-77358152 Msa0426760:CDS 55.0%
CAACAGCCATCATGCTCAGG+AGG + chr3_2:77358184-77358203 Msa0426760:CDS 55.0%
ACCATTGGCCAACCGTCAAC+CGG + chr3_2:77358737-77358756 Msa0426760:CDS 55.0%
GGAAAGCTCTTCCCGGTTGA+CGG - chr3_2:77358752-77358771 None:intergenic 55.0%
GCAGTCAGGAAAGCTCTTCC+CGG - chr3_2:77358759-77358778 None:intergenic 55.0%
CCTCATTACAGCTGGCAGTC+AGG - chr3_2:77358773-77358792 None:intergenic 55.0%
CCTGACTGCCAGCTGTAATG+AGG + chr3_2:77358770-77358789 Msa0426760:CDS 55.0%
GGAGAGCCTCCTGAGCATGA+TGG - chr3_2:77358193-77358212 None:intergenic 60.0%
! GACGGTTGGCCAATGGTCCA+TGG - chr3_2:77358734-77358753 None:intergenic 60.0%
CCATTGGCCAACCGTCAACC+GGG + chr3_2:77358738-77358757 Msa0426760:CDS 60.0%
AGCTCTTCCCGGTTGACGGT+TGG - chr3_2:77358748-77358767 None:intergenic 60.0%
GGAGAGCCTCCTGAGCATGA+TGG - chr3_2:77358193-77358212 None:intergenic 60.0%
! GACGGTTGGCCAATGGTCCA+TGG - chr3_2:77358734-77358753 None:intergenic 60.0%
CCATTGGCCAACCGTCAACC+GGG + chr3_2:77358738-77358757 Msa0426760:CDS 60.0%
AGCTCTTCCCGGTTGACGGT+TGG - chr3_2:77358748-77358767 None:intergenic 60.0%
! CCCGGTTGACGGTTGGCCAA+TGG - chr3_2:77358741-77358760 None:intergenic 65.0%
! CCCGGTTGACGGTTGGCCAA+TGG - chr3_2:77358741-77358760 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 77357747 77359244 77357747 ID=Msa0426760;Name=Msa0426760
chr3_2 mRNA 77357747 77359244 77357747 ID=Msa0426760-mRNA-1;Parent=Msa0426760;Name=Msa0426760-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.66|1|1|1|3|447|226
chr3_2 exon 77357747 77358267 77357747 ID=Msa0426760-mRNA-1:exon:20126;Parent=Msa0426760-mRNA-1
chr3_2 exon 77358410 77358491 77358410 ID=Msa0426760-mRNA-1:exon:20127;Parent=Msa0426760-mRNA-1
chr3_2 exon 77358720 77359244 77358720 ID=Msa0426760-mRNA-1:exon:20128;Parent=Msa0426760-mRNA-1
chr3_2 CDS 77357747 77358267 77357747 ID=Msa0426760-mRNA-1:cds;Parent=Msa0426760-mRNA-1
chr3_2 CDS 77358410 77358491 77358410 ID=Msa0426760-mRNA-1:cds;Parent=Msa0426760-mRNA-1
chr3_2 CDS 77358720 77358797 77358720 ID=Msa0426760-mRNA-1:cds;Parent=Msa0426760-mRNA-1
chr3_2 three_prime_UTR 77358798 77359244 77358798 ID=Msa0426760-mRNA-1:three_prime_utr;Parent=Msa0426760-mRNA-1
Gene Sequence

>Msa0426760

ATGTTTGTTTTATTTATAGGACCTGCAAGGTGTTACCGTCAAATTAAGAACAAGCCATATCCAAAGTCACGTTTCTGCCGTGGTGTTCCTGATCCCAAGATCAGGATTTATGATGTTGGCATGAAGAAGAAAGGTGTTGATGAGTTTCCTTTCTGTGTTCATCTGGTCAGTTGGGAGAAGGAAAATGTGTCCAGTGAGGCACTTGAAGCTGCTAGGATTGCCTGCAACAAATACATGTCAAAGTTTGCAGGAAAGGATGCTTTCCACTTGAGAGTTAGGGTTCATCCATTCCATGTTCTTAGGATCAACAAGATGCTTTCATGTGCGGGAGCTGATAGGCTTCAGACTGGTATGAGAGGGGCTTTTGGAAAGCCACAAGGTGTTTGTGCTAGAGTGGCTATTGGGCAGGTTCTTCTTTCTGTTCGTTGCAAGGACAACAACAGCCATCATGCTCAGGAGGCTCTCCGTCGTGCTAAGTTTAAGTTCCCTGGCCGTCAAAAGATCATTGTTAGCAGGAAGTGGGGATTCACTAAGATTAACCGAGCTGATTATCTGAAGTTAAAGTCCGAGAACAGAATTATGCCTGATGGTGTGAATGCTAAGCTTCTTGGATGCCATGGACCATTGGCCAACCGTCAACCGGGAAGAGCTTTCCTGACTGCCAGCTGTAATGAGGCTTAG

Protein sequence

>Msa0426760

MFVLFIGPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDNNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKINRADYLKLKSENRIMPDGVNAKLLGCHGPLANRQPGRAFLTASCNEA*