Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944880 | sp|Q5XEP9|KCS2_ARATH | 56.108 | 483 | 197 | 6 | 2 | 471 | 36 | 516 | 0.0 | 560 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944880 | A0A1S2XJT1 | 82.942 | 469 | 79 | 1 | 1 | 468 | 1 | 469 | 0.0 | 810 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0019600 | Msa0944880 | 0.817905 | 2.587286e-52 | -8.615850e-47 |
| Msa0641250 | Msa0944880 | 0.813709 | 2.231759e-51 | -8.615850e-47 |
| Msa0669840 | Msa0944880 | 0.835467 | 1.650388e-56 | -8.615850e-47 |
| Msa0739580 | Msa0944880 | 0.831078 | 2.046440e-55 | -8.615850e-47 |
| Msa0782360 | Msa0944880 | 0.806255 | 8.989352e-50 | -8.615850e-47 |
| Msa0124130 | Msa0944880 | 0.803786 | 2.952053e-49 | -8.615850e-47 |
| Msa0141120 | Msa0944880 | 0.813085 | 3.060446e-51 | -8.615850e-47 |
| Msa0149140 | Msa0944880 | 0.802795 | 4.735246e-49 | -8.615850e-47 |
| Msa0156250 | Msa0944880 | 0.805996 | 1.019218e-49 | -8.615850e-47 |
| Msa0158600 | Msa0944880 | 0.805479 | 1.308823e-49 | -8.615850e-47 |
| Msa0185490 | Msa0944880 | 0.954959 | 9.089365e-113 | -8.615850e-47 |
| Msa0197100 | Msa0944880 | 0.817702 | 2.875961e-52 | -8.615850e-47 |
| Msa0197930 | Msa0944880 | 0.803715 | 3.053902e-49 | -8.615850e-47 |
| Msa0212150 | Msa0944880 | 0.818853 | 1.578458e-52 | -8.615850e-47 |
| Msa0221290 | Msa0944880 | 0.801063 | 1.074465e-48 | -8.615850e-47 |
| Msa0392420 | Msa0944880 | 0.847973 | 8.238276e-60 | -8.615850e-47 |
| Msa0392460 | Msa0944880 | 0.844672 | 6.540380e-59 | -8.615850e-47 |
| Msa0392490 | Msa0944880 | 0.852807 | 3.623556e-61 | -8.615850e-47 |
| Msa0406000 | Msa0944880 | 0.856742 | 2.618841e-62 | -8.615850e-47 |
| Msa0424330 | Msa0944880 | 0.826171 | 3.140687e-54 | -8.615850e-47 |
| Msa0424350 | Msa0944880 | 0.820106 | 8.173216e-53 | -8.615850e-47 |
| Msa0451400 | Msa0944880 | 0.850594 | 1.535541e-60 | -8.615850e-47 |
| Msa0239030 | Msa0944880 | 0.819287 | 1.256905e-52 | -8.615850e-47 |
| Msa0252770 | Msa0944880 | 0.824149 | 9.437551e-54 | -8.615850e-47 |
| Msa0276740 | Msa0944880 | 0.808040 | 3.764411e-50 | -8.615850e-47 |
| Msa0306120 | Msa0944880 | 0.806236 | 9.071849e-50 | -8.615850e-47 |
| Msa0316680 | Msa0944880 | 0.810945 | 8.956389e-51 | -8.615850e-47 |
| Msa0329620 | Msa0944880 | 0.829386 | 5.299423e-55 | -8.615850e-47 |
| Msa0344570 | Msa0944880 | 0.836998 | 6.734585e-57 | -8.615850e-47 |
| Msa0359250 | Msa0944880 | 0.869198 | 3.706866e-66 | -8.615850e-47 |
| Msa0487570 | Msa0944880 | 0.852886 | 3.437977e-61 | -8.615850e-47 |
| Msa0487630 | Msa0944880 | 0.859927 | 2.946855e-63 | -8.615850e-47 |
| Msa0492190 | Msa0944880 | 0.833855 | 4.195105e-56 | -8.615850e-47 |
| Msa0515950 | Msa0944880 | 0.803868 | 2.838527e-49 | -8.615850e-47 |
| Msa0534930 | Msa0944880 | 0.839312 | 1.708261e-57 | -8.615850e-47 |
| Msa0535040 | Msa0944880 | 0.824362 | 8.411307e-54 | -8.615850e-47 |
| Msa0591790 | Msa0944880 | 0.850406 | 1.733266e-60 | -8.615850e-47 |
| Msa0594090 | Msa0944880 | 0.818271 | 2.138798e-52 | -8.615850e-47 |
| Msa0860280 | Msa0944880 | 0.825454 | 4.646052e-54 | -8.615850e-47 |
| Msa0896540 | Msa0944880 | 0.814803 | 1.279382e-51 | -8.615850e-47 |
| Msa0898730 | Msa0944880 | 0.809742 | 1.627654e-50 | -8.615850e-47 |
| Msa0929870 | Msa0944880 | 0.819563 | 1.087402e-52 | -8.615850e-47 |
| Msa0936410 | Msa0944880 | 0.802340 | 5.876181e-49 | -8.615850e-47 |
| Msa0944760 | Msa0944880 | 0.953578 | 2.012318e-111 | -8.615850e-47 |
| Msa0944880 | Msa0999300 | 0.833477 | 5.216137e-56 | -8.615850e-47 |
| Msa0944880 | Msa1001890 | 0.819173 | 1.334920e-52 | -8.615850e-47 |
| Msa0944880 | Msa1037900 | 0.810232 | 1.276719e-50 | -8.615850e-47 |
| Msa0944880 | Msa1037910 | 0.809789 | 1.590280e-50 | -8.615850e-47 |
| Msa0944880 | Msa1041530 | 0.801359 | 9.345794e-49 | -8.615850e-47 |
| Msa0944880 | Msa1081570 | 0.805034 | 1.621887e-49 | -8.615850e-47 |
| Msa0944880 | Msa1084520 | 0.806320 | 8.709045e-50 | -8.615850e-47 |
| Msa0944880 | Msa1127140 | 0.814443 | 1.536336e-51 | -8.615850e-47 |
| Msa0944880 | Msa1129960 | 0.815615 | 8.444323e-52 | -8.615850e-47 |
| Msa0944880 | Msa1129970 | 0.803469 | 3.435387e-49 | -8.615850e-47 |
| Msa0944880 | Msa1166400 | 0.807014 | 6.215681e-50 | -8.615850e-47 |
| Msa0944880 | Msa1169990 | 0.800814 | 1.208047e-48 | -8.615850e-47 |
| Msa0944880 | Msa1179280 | 0.802346 | 5.859501e-49 | -8.615850e-47 |
| Msa0944880 | Msa1201160 | 0.834139 | 3.562779e-56 | -8.615850e-47 |
| Msa0944880 | Msa1228190 | 0.824022 | 1.010994e-53 | -8.615850e-47 |
| Msa0944880 | Msa1294290 | 0.824592 | 7.426614e-54 | -8.615850e-47 |
| Msa0944880 | Msa1305510 | 0.807784 | 4.267002e-50 | -8.615850e-47 |
| Msa0944880 | Msa1374550 | 0.822726 | 2.029762e-53 | -8.615850e-47 |
| Msa0944880 | Msa1379970 | 0.830215 | 3.329510e-55 | -8.615850e-47 |
| Msa0944880 | Msa1394890 | 0.810803 | 9.610521e-51 | -8.615850e-47 |
| Msa0944880 | Msa1406780 | 0.840360 | 9.115530e-58 | -8.615850e-47 |
| Msa0944880 | Msa1421550 | 0.845917 | 3.010941e-59 | -8.615850e-47 |
| Msa0944880 | Msa1423460 | 0.951231 | 3.154961e-109 | -8.615850e-47 |
| Msa0944880 | Msa1431850 | 0.838897 | 2.189027e-57 | -8.615850e-47 |
| Msa0944880 | Msa1461060 | 0.827689 | 1.361743e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944880 | MtrunA17_Chr1g0188051 | 58.650 | 474 | 192 | 2 | 2 | 471 | 34 | 507 | 0.0 | 578 |
| Msa0944880 | MtrunA17_Chr1g0166191 | 58.491 | 477 | 188 | 4 | 2 | 471 | 40 | 513 | 0.0 | 571 |
| Msa0944880 | MtrunA17_Chr4g0063011 | 55.672 | 476 | 203 | 4 | 2 | 471 | 22 | 495 | 0.0 | 545 |
| Msa0944880 | MtrunA17_Chr6g0461631 | 96.958 | 263 | 8 | 0 | 217 | 479 | 3 | 265 | 0.0 | 540 |
| Msa0944880 | MtrunA17_Chr6g0480561 | 56.206 | 427 | 185 | 2 | 43 | 468 | 41 | 466 | 1.93e-175 | 501 |
| Msa0944880 | MtrunA17_Chr7g0276251 | 56.595 | 417 | 178 | 2 | 60 | 473 | 115 | 531 | 1.68e-171 | 493 |
| Msa0944880 | MtrunA17_Chr2g0306781 | 63.562 | 365 | 133 | 0 | 107 | 471 | 36 | 400 | 3.29e-171 | 487 |
| Msa0944880 | MtrunA17_Chr4g0035081 | 51.266 | 474 | 224 | 4 | 2 | 470 | 31 | 502 | 2.49e-170 | 489 |
| Msa0944880 | MtrunA17_Chr1g0209881 | 50.816 | 429 | 209 | 2 | 43 | 471 | 65 | 491 | 1.17e-158 | 459 |
| Msa0944880 | MtrunA17_Chr5g0423521 | 46.809 | 470 | 245 | 4 | 6 | 471 | 23 | 491 | 2.19e-154 | 448 |
| Msa0944880 | MtrunA17_Chr3g0136561 | 51.069 | 421 | 196 | 2 | 60 | 470 | 483 | 903 | 2.46e-154 | 461 |
| Msa0944880 | MtrunA17_Chr6g0461621 | 91.703 | 229 | 19 | 0 | 1 | 229 | 1 | 229 | 5.33e-152 | 432 |
| Msa0944880 | MtrunA17_Chr2g0277841 | 48.786 | 412 | 206 | 4 | 63 | 472 | 45 | 453 | 5.41e-140 | 410 |
| Msa0944880 | MtrunA17_Chr7g0250661 | 63.668 | 289 | 105 | 0 | 183 | 471 | 2 | 290 | 8.53e-140 | 403 |
| Msa0944880 | MtrunA17_Chr2g0295781 | 47.317 | 410 | 212 | 3 | 63 | 470 | 44 | 451 | 4.28e-130 | 384 |
| Msa0944880 | MtrunA17_Chr2g0282281 | 46.517 | 402 | 209 | 3 | 62 | 462 | 107 | 503 | 2.06e-127 | 379 |
| Msa0944880 | MtrunA17_Chr7g0276241 | 56.122 | 294 | 122 | 2 | 183 | 474 | 2 | 290 | 9.43e-119 | 350 |
| Msa0944880 | MtrunA17_Chr1g0204301 | 40.441 | 408 | 242 | 1 | 62 | 468 | 77 | 484 | 1.65e-104 | 320 |
| Msa0944880 | MtrunA17_Chr4g0026871 | 60.699 | 229 | 89 | 1 | 245 | 472 | 1 | 229 | 3.40e-100 | 300 |
| Msa0944880 | MtrunA17_Chr4g0030591 | 38.761 | 436 | 238 | 7 | 63 | 478 | 27 | 453 | 6.42e-98 | 303 |
| Msa0944880 | MtrunA17_Chr4g0030601 | 38.208 | 424 | 248 | 6 | 63 | 478 | 27 | 444 | 1.97e-95 | 296 |
| Msa0944880 | MtrunA17_Chr3g0115021 | 40.194 | 413 | 239 | 4 | 60 | 468 | 75 | 483 | 5.99e-95 | 295 |
| Msa0944880 | MtrunA17_Chr3g0115041 | 40.194 | 413 | 239 | 4 | 60 | 468 | 75 | 483 | 6.59e-95 | 295 |
| Msa0944880 | MtrunA17_Chr1g0212951 | 35.683 | 454 | 255 | 8 | 45 | 467 | 4 | 451 | 1.88e-93 | 291 |
| Msa0944880 | MtrunA17_Chr6g0469631 | 41.626 | 406 | 229 | 4 | 67 | 468 | 81 | 482 | 5.80e-93 | 290 |
| Msa0944880 | MtrunA17_Chr2g0327721 | 38.515 | 431 | 226 | 10 | 63 | 467 | 27 | 444 | 1.18e-92 | 289 |
| Msa0944880 | MtrunA17_Chr4g0030581 | 37.788 | 434 | 244 | 7 | 63 | 478 | 27 | 452 | 1.62e-92 | 289 |
| Msa0944880 | MtrunA17_Chr4g0026791 | 60.894 | 179 | 69 | 1 | 245 | 422 | 1 | 179 | 2.93e-74 | 231 |
| Msa0944880 | MtrunA17_Chr4g0026721 | 60.870 | 161 | 63 | 0 | 312 | 472 | 1 | 161 | 1.22e-67 | 214 |
| Msa0944880 | MtrunA17_Chr4g0026861 | 51.445 | 173 | 83 | 1 | 49 | 220 | 43 | 215 | 1.88e-56 | 186 |
| Msa0944880 | MtrunA17_Chr7g0250651 | 41.667 | 156 | 83 | 4 | 2 | 151 | 33 | 186 | 2.16e-29 | 114 |
| Msa0944880 | MtrunA17_Chr4g0026801 | 39.241 | 158 | 90 | 3 | 12 | 163 | 1 | 158 | 2.20e-28 | 110 |
| Msa0944880 | MtrunA17_Chr4g0040421 | 23.462 | 260 | 162 | 8 | 183 | 437 | 152 | 379 | 5.71e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944880 | AT1G04220.1 | 56.108 | 483 | 197 | 6 | 2 | 471 | 36 | 516 | 0.0 | 560 |
| Msa0944880 | AT2G26640.1 | 56.303 | 476 | 200 | 4 | 2 | 471 | 31 | 504 | 0.0 | 550 |
| Msa0944880 | AT5G43760.1 | 60.369 | 434 | 162 | 4 | 48 | 471 | 88 | 521 | 0.0 | 541 |
| Msa0944880 | AT2G16280.1 | 51.471 | 476 | 220 | 4 | 2 | 470 | 39 | 510 | 1.95e-174 | 500 |
| Msa0944880 | AT1G19440.1 | 51.261 | 476 | 221 | 4 | 2 | 470 | 43 | 514 | 5.83e-174 | 499 |
| Msa0944880 | AT4G34510.1 | 50.844 | 474 | 226 | 5 | 2 | 472 | 18 | 487 | 2.57e-172 | 494 |
| Msa0944880 | AT1G01120.1 | 53.162 | 427 | 190 | 2 | 52 | 468 | 98 | 524 | 1.08e-171 | 494 |
| Msa0944880 | AT2G46720.1 | 50.455 | 440 | 212 | 3 | 32 | 468 | 27 | 463 | 6.90e-166 | 476 |
| Msa0944880 | AT3G10280.1 | 49.318 | 440 | 210 | 4 | 32 | 468 | 27 | 456 | 2.51e-158 | 457 |
| Msa0944880 | AT1G25450.1 | 48.319 | 476 | 237 | 4 | 2 | 471 | 15 | 487 | 1.47e-157 | 456 |
| Msa0944880 | AT4G34250.1 | 48.649 | 481 | 230 | 6 | 6 | 473 | 14 | 490 | 1.05e-156 | 454 |
| Msa0944880 | AT1G68530.1 | 46.751 | 477 | 243 | 5 | 2 | 471 | 20 | 492 | 2.49e-156 | 453 |
| Msa0944880 | AT4G34520.1 | 52.459 | 427 | 190 | 4 | 55 | 470 | 66 | 490 | 2.20e-155 | 451 |
| Msa0944880 | AT2G15090.1 | 52.000 | 425 | 194 | 5 | 55 | 470 | 56 | 479 | 1.72e-154 | 448 |
| Msa0944880 | AT2G26250.1 | 43.976 | 498 | 250 | 2 | 2 | 470 | 53 | 550 | 2.08e-153 | 448 |
| Msa0944880 | AT1G71160.1 | 45.991 | 424 | 227 | 2 | 45 | 468 | 25 | 446 | 9.10e-135 | 397 |
| Msa0944880 | AT5G49070.1 | 45.154 | 423 | 228 | 3 | 51 | 471 | 36 | 456 | 9.31e-125 | 372 |
| Msa0944880 | AT3G52160.1 | 43.373 | 415 | 203 | 3 | 46 | 459 | 66 | 449 | 1.70e-117 | 352 |
| Msa0944880 | AT3G52160.2 | 45.604 | 364 | 167 | 2 | 96 | 459 | 4 | 336 | 9.49e-110 | 328 |
| Msa0944880 | AT2G28630.2 | 38.462 | 429 | 243 | 7 | 68 | 478 | 32 | 457 | 3.34e-100 | 309 |
| Msa0944880 | AT2G28630.1 | 38.462 | 429 | 243 | 7 | 68 | 478 | 32 | 457 | 3.34e-100 | 309 |
| Msa0944880 | AT1G07720.1 | 38.679 | 424 | 238 | 7 | 63 | 467 | 27 | 447 | 3.13e-97 | 301 |
| Msa0944880 | AT1G07720.2 | 38.679 | 424 | 238 | 7 | 63 | 467 | 70 | 490 | 6.22e-97 | 302 |
| Msa0944880 | AT5G04530.1 | 40.326 | 429 | 231 | 10 | 56 | 467 | 17 | 437 | 6.37e-97 | 300 |
| Msa0944880 | AT1G68530.2 | 48.387 | 279 | 142 | 1 | 49 | 327 | 73 | 349 | 9.86e-89 | 276 |
| Msa0944880 | AT5G49070.2 | 41.219 | 279 | 163 | 1 | 51 | 329 | 36 | 313 | 1.28e-65 | 214 |
| Msa0944880 | AT4G34850.2 | 25.306 | 245 | 145 | 9 | 201 | 436 | 91 | 306 | 4.28e-12 | 67.4 |
| Msa0944880 | AT4G34850.1 | 25.306 | 245 | 145 | 9 | 201 | 436 | 164 | 379 | 7.18e-12 | 67.4 |
Find 73 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATGTCCCTGAAGCATTAT+TGG | 0.165030 | 6_3:+21951932 | Msa0944880:CDS |
| AAAATATGGCAAATGGCTTT+TGG | 0.246325 | 6_3:+21954716 | Msa0944880:CDS |
| GTTAATCATTATAAACTTAG+AGG | 0.259701 | 6_3:+21952125 | Msa0944880:CDS |
| TTGGATAGAGCAAAACATTT+TGG | 0.264127 | 6_3:+21951840 | Msa0944880:CDS |
| GGAATTTCCAATAATGCTTC+AGG | 0.289389 | 6_3:-21951939 | None:intergenic |
| AGCACTAAAGCATATGAGTT+TGG | 0.291741 | 6_3:-21954098 | None:intergenic |
| TCCATTAGTCCTCCCAATTT+CGG | 0.294314 | 6_3:+21954418 | Msa0944880:CDS |
| TCCGAAATTGGGAGGACTAA+TGG | 0.324601 | 6_3:-21954419 | None:intergenic |
| GTTCAATTCAACTACATAAC+TGG | 0.326614 | 6_3:-21955031 | None:intergenic |
| AGCTAAGGGGAGAGTTAAAA+AGG | 0.330815 | 6_3:+21954688 | Msa0944880:CDS |
| AGATTATTGATTATAATATT+CGG | 0.334053 | 6_3:+21955008 | Msa0944880:three_prime_UTR |
| AAAGTTGAAGCTAAAGATAT+TGG | 0.336152 | 6_3:+21952044 | Msa0944880:CDS |
| TGTGTCTAGAAAGAATAATT+AGG | 0.340619 | 6_3:+21954909 | Msa0944880:three_prime_UTR |
| TTGTTCATTGGCAATGGAAC+AGG | 0.342492 | 6_3:-21954836 | None:intergenic |
| TAACTTTCATGTCATGTTTG+TGG | 0.344699 | 6_3:+21954882 | Msa0944880:three_prime_UTR |
| AACTTAAAATTCGGCATGTA+TGG | 0.357301 | 6_3:-21954500 | None:intergenic |
| TTAATCATATGTTTGTTCAT+TGG | 0.363214 | 6_3:-21954848 | None:intergenic |
| TAGAAATGCTTCAACATTGT+TGG | 0.389223 | 6_3:-21951570 | None:intergenic |
| TTGCACAAAAGAAATGTTGT+TGG | 0.390520 | 6_3:+21951821 | Msa0944880:CDS |
| GATCTATAATCTTAGTGGTA+TGG | 0.390916 | 6_3:+21952157 | Msa0944880:CDS |
| GCACTAAAGCATATGAGTTT+GGG | 0.397910 | 6_3:-21954097 | None:intergenic |
| TACTAATTGTCTCTTTCGAA+TGG | 0.399551 | 6_3:+21954178 | Msa0944880:CDS |
| AATATCTTTAGCTTCAACTT+TGG | 0.416100 | 6_3:-21952042 | None:intergenic |
| TCGAACGCTAACTTAAAATT+CGG | 0.417831 | 6_3:-21954509 | None:intergenic |
| TTAAGGTTAATACTGCTGTT+TGG | 0.420779 | 6_3:+21954747 | Msa0944880:CDS |
| CTATATAGTGTCATTCTTGA+AGG | 0.424575 | 6_3:-21954614 | None:intergenic |
| ATCTATAATCTTAGTGGTAT+GGG | 0.428495 | 6_3:+21952158 | Msa0944880:CDS |
| GTGTGTGAATGTTGTTGAAA+AGG | 0.434270 | 6_3:-21951538 | None:intergenic |
| TTTATCAATATTGATGGTTG+AGG | 0.454477 | 6_3:-21951693 | None:intergenic |
| GGGACATAAAATATGGCAAA+TGG | 0.457927 | 6_3:+21954709 | Msa0944880:CDS |
| ACTAATTGTCTCTTTCGAAT+GGG | 0.459375 | 6_3:+21954179 | Msa0944880:CDS |
| TCATCAAGTGTTAGTCTTGG+TGG | 0.459635 | 6_3:-21951960 | None:intergenic |
| AAATACCTCAAGAAGACGTT+TGG | 0.460466 | 6_3:-21952213 | None:intergenic |
| ACACATCATCAAGTTCTGTT+TGG | 0.465892 | 6_3:+21954645 | Msa0944880:CDS |
| CGATGGATGACTTGAGAGTA+GGG | 0.466110 | 6_3:-21954213 | None:intergenic |
| AGAATGACACTATATAGATA+TGG | 0.470646 | 6_3:+21954620 | Msa0944880:CDS |
| AGTGGTATGGGATGCAGTGC+TGG | 0.470681 | 6_3:+21952170 | Msa0944880:CDS |
| ATATGTTTGTTCATTGGCAA+TGG | 0.471516 | 6_3:-21954842 | None:intergenic |
| GCTTCATCAAGTGTTAGTCT+TGG | 0.477201 | 6_3:-21951963 | None:intergenic |
| TTCGAAAGAGACAATTAGTA+AGG | 0.478311 | 6_3:-21954175 | None:intergenic |
| ATTGTCTTATTGTGAAGCTA+AGG | 0.483820 | 6_3:+21954673 | Msa0944880:CDS |
| CATGAAAATGTAGTAAACTA+AGG | 0.486928 | 6_3:-21951736 | None:intergenic |
| TGTGTGAATGTTGTTGAAAA+GGG | 0.506337 | 6_3:-21951537 | None:intergenic |
| TGTGACATGCAAAATCTACT+AGG | 0.521489 | 6_3:-21951779 | None:intergenic |
| TTTGAGCGGCTACGGTCCGA+TGG | 0.522197 | 6_3:-21954230 | None:intergenic |
| GAATTTCCAATAATGCTTCA+GGG | 0.524144 | 6_3:-21951938 | None:intergenic |
| TTGTCTTATTGTGAAGCTAA+GGG | 0.526933 | 6_3:+21954674 | Msa0944880:CDS |
| CCGATGGATGACTTGAGAGT+AGG | 0.528757 | 6_3:-21954214 | None:intergenic |
| CAATTAGTAAGGATCATTGA+AGG | 0.529851 | 6_3:-21954164 | None:intergenic |
| TTAATCATTATAAACTTAGA+GGG | 0.529909 | 6_3:+21952126 | Msa0944880:CDS |
| AGGATCTCATGAATGTTGCT+AGG | 0.531519 | 6_3:+21954363 | Msa0944880:CDS |
| GCGGTAGAGCGGTTCTTGAT+CGG | 0.540567 | 6_3:+21954552 | Msa0944880:CDS |
| AATTGTCTCTTTCGAATGGG+TGG | 0.541404 | 6_3:+21954182 | Msa0944880:CDS |
| TGCTTCAGGGACATAAGTGA+TGG | 0.546437 | 6_3:-21951925 | None:intergenic |
| TAAAGATATTGGAATTCTTG+TGG | 0.557701 | 6_3:+21952055 | Msa0944880:CDS |
| GGATCTCATGAATGTTGCTA+GGG | 0.577726 | 6_3:+21954364 | Msa0944880:CDS |
| TCTCTTTCGAATGGGTGGAT+CGG | 0.581140 | 6_3:+21954187 | Msa0944880:CDS |
| GTAGTAGCTACATCATGTGT+AGG | 0.584328 | 6_3:+21951639 | Msa0944880:CDS |
| AATTAGTAAGGATCATTGAA+GGG | 0.585870 | 6_3:-21954163 | None:intergenic |
| CAGTGCTGGTGTTATTGCAG+TGG | 0.587920 | 6_3:+21952184 | Msa0944880:CDS |
| TGTTCATTGGCAATGGAACA+GGG | 0.590457 | 6_3:-21954835 | None:intergenic |
| CTTTGCCAAACGTCTTCTTG+AGG | 0.595847 | 6_3:+21952208 | Msa0944880:CDS |
| CATGCATACGGGCGGTAGAG+CGG | 0.599254 | 6_3:+21954541 | Msa0944880:CDS |
| ACAATAGTATCTGAAAGTGA+TGG | 0.605880 | 6_3:-21952104 | None:intergenic |
| GTATCTGAAAGTGATGGTGT+AGG | 0.606742 | 6_3:-21952098 | None:intergenic |
| ACTCGGTGTTAAACTATCGA+AGG | 0.617292 | 6_3:+21954343 | Msa0944880:CDS |
| TGTCTTATTGTGAAGCTAAG+GGG | 0.629341 | 6_3:+21954675 | Msa0944880:CDS |
| CGTACACACATAACATCGCT+CGG | 0.629342 | 6_3:+21954395 | Msa0944880:CDS |
| GCTTCAGGGACATAAGTGAT+GGG | 0.631530 | 6_3:-21951924 | None:intergenic |
| GCAATTGTAACTGTTGTCAT+CGG | 0.639808 | 6_3:-21954291 | None:intergenic |
| CCTACTCTCAAGTCATCCAT+CGG | 0.642889 | 6_3:+21954214 | Msa0944880:CDS |
| CAAATCTCAAGCATATACAA+AGG | 0.644919 | 6_3:+21954134 | Msa0944880:CDS |
| CATTCGTTGCGCACTCACGT+AGG | 0.677333 | 6_3:+21954266 | Msa0944880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAAATTATAAAAGAG+TGG | + | chr6_3:21952810-21952829 | Msa0944880:intron | 10.0% |
| !! | TAAAAAAATTATAAAAGAGT+GGG | + | chr6_3:21952811-21952830 | Msa0944880:intron | 10.0% |
| !!! | TATTTTTCTTTTTCTTTTTT+TGG | - | chr6_3:21953187-21953206 | None:intergenic | 10.0% |
| !!! | TGTATATGTTATTTTTTTTT+CGG | - | chr6_3:21953364-21953383 | None:intergenic | 10.0% |
| !!! | ATTATTTTTGTTTTTTTTGT+TGG | - | chr6_3:21953722-21953741 | None:intergenic | 10.0% |
| !!! | AGATTATTGATTATAATATT+CGG | + | chr6_3:21955008-21955027 | Msa0944880:three_prime_UTR | 10.0% |
| !!! | AATGATTTTATCAATATTGA+TGG | - | chr6_3:21951702-21951721 | None:intergenic | 15.0% |
| !! | TTAATCATTATAAACTTAGA+GGG | + | chr6_3:21952126-21952145 | Msa0944880:CDS | 15.0% |
| !!! | AAAGAGTACAAAATTATTTA+AGG | + | chr6_3:21952300-21952319 | Msa0944880:intron | 15.0% |
| !! | TAAAAAAAAATGAAAATGTC+TGG | - | chr6_3:21952449-21952468 | None:intergenic | 15.0% |
| !!! | TTCATTTTTTTTTAGTAAGT+AGG | + | chr6_3:21952455-21952474 | Msa0944880:intron | 15.0% |
| !!! | TATTTTATCTAAAAGGTTAT+TGG | + | chr6_3:21952662-21952681 | Msa0944880:intron | 15.0% |
| !! | TTGGAAATATATTTATACAA+AGG | + | chr6_3:21952681-21952700 | Msa0944880:intron | 15.0% |
| !! | TTATATGAGAAAACAATATA+TGG | - | chr6_3:21953555-21953574 | None:intergenic | 15.0% |
| !!! | ATATTGTTTTCTCATATAAT+TGG | + | chr6_3:21953556-21953575 | Msa0944880:intron | 15.0% |
| !!! | TGAAGATATTTTATAATTGA+TGG | + | chr6_3:21953837-21953856 | Msa0944880:intron | 15.0% |
| !!! | GTTTGTTAAATTTATTTGTA+GGG | - | chr6_3:21953991-21954010 | None:intergenic | 15.0% |
| !!! | TGTTTGTTAAATTTATTTGT+AGG | - | chr6_3:21953992-21954011 | None:intergenic | 15.0% |
| !!! | TGATTCATAAGATTTTAGAA+AGG | + | chr6_3:21951889-21951908 | Msa0944880:CDS | 20.0% |
| !!! | GAATCAAATTTAGTTCTTTT+TGG | + | chr6_3:21951993-21952012 | Msa0944880:CDS | 20.0% |
| !! | GTTAATCATTATAAACTTAG+AGG | + | chr6_3:21952125-21952144 | Msa0944880:CDS | 20.0% |
| !!! | ATTTTGATCTATAATCTTAG+TGG | + | chr6_3:21952152-21952171 | Msa0944880:CDS | 20.0% |
| !!! | ACTATTTTATACTTGTTTGT+TGG | + | chr6_3:21952361-21952380 | Msa0944880:intron | 20.0% |
| !! | CCTCTAGTATTAAAATATTT+GGG | - | chr6_3:21952493-21952512 | None:intergenic | 20.0% |
| !! | ACCTCTAGTATTAAAATATT+TGG | - | chr6_3:21952494-21952513 | None:intergenic | 20.0% |
| !! | AACTATATGAAATTGATGAA+TGG | - | chr6_3:21952724-21952743 | None:intergenic | 20.0% |
| !! | GAGATATCAATATGTATTTA+TGG | + | chr6_3:21952775-21952794 | Msa0944880:intron | 20.0% |
| !!! | GGTTTTAGTTGTTTTTTTTT+TGG | + | chr6_3:21952895-21952914 | Msa0944880:intron | 20.0% |
| !! | GTTATTTACATATAGCAAAA+GGG | + | chr6_3:21952917-21952936 | Msa0944880:intron | 20.0% |
| !!! | ACAAATAAAAAAAGTGTAGT+TGG | + | chr6_3:21953055-21953074 | Msa0944880:intron | 20.0% |
| !! | AAAATAAAATATGCAAGATC+CGG | + | chr6_3:21953318-21953337 | Msa0944880:intron | 20.0% |
| !!! | AAGAGTTTTGCTATTTATTA+TGG | + | chr6_3:21953428-21953447 | Msa0944880:intron | 20.0% |
| !! | CAGAATCTTTAATTCAATAA+TGG | - | chr6_3:21953664-21953683 | None:intergenic | 20.0% |
| !! | ATAATCAAGCTTAATTAGTT+AGG | - | chr6_3:21954053-21954072 | None:intergenic | 20.0% |
| !! | TTAAAAAGGGACATAAAATA+TGG | + | chr6_3:21954702-21954721 | Msa0944880:CDS | 20.0% |
| !! | TTAATCATATGTTTGTTCAT+TGG | - | chr6_3:21954851-21954870 | None:intergenic | 20.0% |
| !! | TTTATCAATATTGATGGTTG+AGG | - | chr6_3:21951696-21951715 | None:intergenic | 25.0% |
| ! | CATGAAAATGTAGTAAACTA+AGG | - | chr6_3:21951739-21951758 | None:intergenic | 25.0% |
| !! | TCTACTAGGTATATTTTGTT+TGG | - | chr6_3:21951768-21951787 | None:intergenic | 25.0% |
| !!! | GTGCAAATACAATTGTTTTT+TGG | - | chr6_3:21951807-21951826 | None:intergenic | 25.0% |
| !! | AATATCTTTAGCTTCAACTT+TGG | - | chr6_3:21952045-21952064 | None:intergenic | 25.0% |
| ! | AAAGTTGAAGCTAAAGATAT+TGG | + | chr6_3:21952044-21952063 | Msa0944880:CDS | 25.0% |
| ! | TAAAGATATTGGAATTCTTG+TGG | + | chr6_3:21952055-21952074 | Msa0944880:CDS | 25.0% |
| ! | ATCTATAATCTTAGTGGTAT+GGG | + | chr6_3:21952158-21952177 | Msa0944880:CDS | 25.0% |
| !!! | CCCAAATATTTTAATACTAG+AGG | + | chr6_3:21952490-21952509 | Msa0944880:intron | 25.0% |
| ! | GGTTATTTACATATAGCAAA+AGG | + | chr6_3:21952916-21952935 | Msa0944880:intron | 25.0% |
| !! | CATTAGCTGTATTAATTTGA+AGG | + | chr6_3:21953096-21953115 | Msa0944880:intron | 25.0% |
| ! | AAATAAAATATGCAAGATCC+GGG | + | chr6_3:21953319-21953338 | Msa0944880:intron | 25.0% |
| !!! | TGTTATTTTTTTTTCGGTAG+TGG | - | chr6_3:21953358-21953377 | None:intergenic | 25.0% |
| !!! | ATACTGGAAGATACTTTTTT+TGG | - | chr6_3:21953583-21953602 | None:intergenic | 25.0% |
| ! | TATTTATGACATGCAATTAC+AGG | + | chr6_3:21954070-21954089 | Msa0944880:intron | 25.0% |
| ! | AATTAGTAAGGATCATTGAA+GGG | - | chr6_3:21954166-21954185 | None:intergenic | 25.0% |
| ! | ATGTGAAAAATTTAGTTGAG+AGG | + | chr6_3:21954453-21954472 | Msa0944880:CDS | 25.0% |
| ! | AGAATGACACTATATAGATA+TGG | + | chr6_3:21954620-21954639 | Msa0944880:CDS | 25.0% |
| !!! | CAAGCATTTTTCAATGATTT+AGG | - | chr6_3:21954794-21954813 | None:intergenic | 25.0% |
| ! | CTAAATCATTGAAAAATGCT+TGG | + | chr6_3:21954792-21954811 | Msa0944880:CDS | 25.0% |
| ! | TGTGTCTAGAAAGAATAATT+AGG | + | chr6_3:21954909-21954928 | Msa0944880:three_prime_UTR | 25.0% |
| TGTGTGAATGTTGTTGAAAA+GGG | - | chr6_3:21951540-21951559 | None:intergenic | 30.0% | |
| TAGAAATGCTTCAACATTGT+TGG | - | chr6_3:21951573-21951592 | None:intergenic | 30.0% | |
| TTGCACAAAAGAAATGTTGT+TGG | + | chr6_3:21951821-21951840 | Msa0944880:CDS | 30.0% | |
| ! | TTGGATAGAGCAAAACATTT+TGG | + | chr6_3:21951840-21951859 | Msa0944880:CDS | 30.0% |
| !! | CATAAGATTTTAGAAAGGTC+AGG | + | chr6_3:21951894-21951913 | Msa0944880:CDS | 30.0% |
| GAATTTCCAATAATGCTTCA+GGG | - | chr6_3:21951941-21951960 | None:intergenic | 30.0% | |
| ACAATAGTATCTGAAAGTGA+TGG | - | chr6_3:21952107-21952126 | None:intergenic | 30.0% | |
| GATCTATAATCTTAGTGGTA+TGG | + | chr6_3:21952157-21952176 | Msa0944880:CDS | 30.0% | |
| ! | TGATATTGCTTCTTGTTTGT+CGG | + | chr6_3:21952337-21952356 | Msa0944880:intron | 30.0% |
| AAAATATTTGGGTCTCTCAA+TGG | - | chr6_3:21952482-21952501 | None:intergenic | 30.0% | |
| AATAAAATATGCAAGATCCG+GGG | + | chr6_3:21953320-21953339 | Msa0944880:intron | 30.0% | |
| GTGTGAATTTGTATCATTTG+CGG | - | chr6_3:21953494-21953513 | None:intergenic | 30.0% | |
| ATTTCACTGTCAATCATCAT+AGG | + | chr6_3:21953637-21953656 | Msa0944880:intron | 30.0% | |
| CAAATCTCAAGCATATACAA+AGG | + | chr6_3:21954134-21954153 | Msa0944880:CDS | 30.0% | |
| CAATTAGTAAGGATCATTGA+AGG | - | chr6_3:21954167-21954186 | None:intergenic | 30.0% | |
| TTCGAAAGAGACAATTAGTA+AGG | - | chr6_3:21954178-21954197 | None:intergenic | 30.0% | |
| TACTAATTGTCTCTTTCGAA+TGG | + | chr6_3:21954178-21954197 | Msa0944880:CDS | 30.0% | |
| ACTAATTGTCTCTTTCGAAT+GGG | + | chr6_3:21954179-21954198 | Msa0944880:CDS | 30.0% | |
| GAAGACGAAAAAGAAATACT+CGG | + | chr6_3:21954326-21954345 | Msa0944880:CDS | 30.0% | |
| ! | ACTTGAGTTTTTCCGAAATT+GGG | - | chr6_3:21954433-21954452 | None:intergenic | 30.0% |
| ! | TACTTGAGTTTTTCCGAAAT+TGG | - | chr6_3:21954434-21954453 | None:intergenic | 30.0% |
| AACTTAAAATTCGGCATGTA+TGG | - | chr6_3:21954503-21954522 | None:intergenic | 30.0% | |
| TCGAACGCTAACTTAAAATT+CGG | - | chr6_3:21954512-21954531 | None:intergenic | 30.0% | |
| !! | TGAGCTTGATGATTTTCATA+TGG | + | chr6_3:21954589-21954608 | Msa0944880:CDS | 30.0% |
| ! | CTATATAGTGTCATTCTTGA+AGG | - | chr6_3:21954617-21954636 | None:intergenic | 30.0% |
| ! | ATTGTCTTATTGTGAAGCTA+AGG | + | chr6_3:21954673-21954692 | Msa0944880:CDS | 30.0% |
| ! | TTGTCTTATTGTGAAGCTAA+GGG | + | chr6_3:21954674-21954693 | Msa0944880:CDS | 30.0% |
| ! | AAAATATGGCAAATGGCTTT+TGG | + | chr6_3:21954716-21954735 | Msa0944880:CDS | 30.0% |
| TTAAGGTTAATACTGCTGTT+TGG | + | chr6_3:21954747-21954766 | Msa0944880:CDS | 30.0% | |
| ATCATTGAAAAATGCTTGGA+TGG | + | chr6_3:21954796-21954815 | Msa0944880:CDS | 30.0% | |
| ATATGTTTGTTCATTGGCAA+TGG | - | chr6_3:21954845-21954864 | None:intergenic | 30.0% | |
| TAACTTTCATGTCATGTTTG+TGG | + | chr6_3:21954882-21954901 | Msa0944880:three_prime_UTR | 30.0% | |
| GTTCAATTCAACTACATAAC+TGG | - | chr6_3:21955034-21955053 | None:intergenic | 30.0% | |
| GTGTGTGAATGTTGTTGAAA+AGG | - | chr6_3:21951541-21951560 | None:intergenic | 35.0% | |
| TGTGACATGCAAAATCTACT+AGG | - | chr6_3:21951782-21951801 | None:intergenic | 35.0% | |
| !! | ATTTTAGAAAGGTCAGGTGT+GGG | + | chr6_3:21951900-21951919 | Msa0944880:CDS | 35.0% |
| ! | TTATGTCCCTGAAGCATTAT+TGG | + | chr6_3:21951932-21951951 | Msa0944880:CDS | 35.0% |
| GGAATTTCCAATAATGCTTC+AGG | - | chr6_3:21951942-21951961 | None:intergenic | 35.0% | |
| AAATACCTCAAGAAGACGTT+TGG | - | chr6_3:21952216-21952235 | None:intergenic | 35.0% | |
| !!! | ATTTTTTTTTCGGTAGTGGC+CGG | - | chr6_3:21953354-21953373 | None:intergenic | 35.0% |
| TGTGCTAAGCTCACTTATTA+AGG | - | chr6_3:21953965-21953984 | None:intergenic | 35.0% | |
| CAAATTACATGTAGCTAGCA+AGG | - | chr6_3:21954028-21954047 | None:intergenic | 35.0% | |
| GCACTAAAGCATATGAGTTT+GGG | - | chr6_3:21954100-21954119 | None:intergenic | 35.0% | |
| AGCACTAAAGCATATGAGTT+TGG | - | chr6_3:21954101-21954120 | None:intergenic | 35.0% | |
| !! | GCATCAACTGATATTTTGAG+CGG | - | chr6_3:21954247-21954266 | None:intergenic | 35.0% |
| GCAATTGTAACTGTTGTCAT+CGG | - | chr6_3:21954294-21954313 | None:intergenic | 35.0% | |
| ! | CGATCAATTTTGCATGCATA+CGG | + | chr6_3:21954529-21954548 | Msa0944880:CDS | 35.0% |
| ! | GATCAATTTTGCATGCATAC+GGG | + | chr6_3:21954530-21954549 | Msa0944880:CDS | 35.0% |
| ACACATCATCAAGTTCTGTT+TGG | + | chr6_3:21954645-21954664 | Msa0944880:CDS | 35.0% | |
| ! | TGTCTTATTGTGAAGCTAAG+GGG | + | chr6_3:21954675-21954694 | Msa0944880:CDS | 35.0% |
| GGGACATAAAATATGGCAAA+TGG | + | chr6_3:21954709-21954728 | Msa0944880:CDS | 35.0% | |
| GTAGTAGCTACATCATGTGT+AGG | + | chr6_3:21951639-21951658 | Msa0944880:CDS | 40.0% | |
| !! | GATTTTAGAAAGGTCAGGTG+TGG | + | chr6_3:21951899-21951918 | Msa0944880:CDS | 40.0% |
| !! | TTTTAGAAAGGTCAGGTGTG+GGG | + | chr6_3:21951901-21951920 | Msa0944880:CDS | 40.0% |
| !! | TCATCAAGTGTTAGTCTTGG+TGG | - | chr6_3:21951963-21951982 | None:intergenic | 40.0% |
| ! | GCTTCATCAAGTGTTAGTCT+TGG | - | chr6_3:21951966-21951985 | None:intergenic | 40.0% |
| ! | GTATCTGAAAGTGATGGTGT+AGG | - | chr6_3:21952101-21952120 | None:intergenic | 40.0% |
| ACCTTAGTCCTACTCAGATA+CGG | - | chr6_3:21952870-21952889 | None:intergenic | 40.0% | |
| TGAGTAGGACTAAGGTAGTT+CGG | + | chr6_3:21952874-21952893 | Msa0944880:intron | 40.0% | |
| TGAGCTTAACTCAGTTGGTT+GGG | + | chr6_3:21953286-21953305 | Msa0944880:intron | 40.0% | |
| !!! | TTTTTTTTTCGGTAGTGGCC+GGG | - | chr6_3:21953353-21953372 | None:intergenic | 40.0% |
| CTGTGACTGAACACATATAC+TGG | - | chr6_3:21953599-21953618 | None:intergenic | 40.0% | |
| AATTGTCTCTTTCGAATGGG+TGG | + | chr6_3:21954182-21954201 | Msa0944880:CDS | 40.0% | |
| !! | ACTGATATTTTGAGCGGCTA+CGG | - | chr6_3:21954241-21954260 | None:intergenic | 40.0% |
| !! | ACTCGGTGTTAAACTATCGA+AGG | + | chr6_3:21954343-21954362 | Msa0944880:CDS | 40.0% |
| AGGATCTCATGAATGTTGCT+AGG | + | chr6_3:21954363-21954382 | Msa0944880:CDS | 40.0% | |
| GGATCTCATGAATGTTGCTA+GGG | + | chr6_3:21954364-21954383 | Msa0944880:CDS | 40.0% | |
| TCCATTAGTCCTCCCAATTT+CGG | + | chr6_3:21954418-21954437 | Msa0944880:CDS | 40.0% | |
| ! | TGAGTTTTTCCGAAATTGGG+AGG | - | chr6_3:21954430-21954449 | None:intergenic | 40.0% |
| AGCTAAGGGGAGAGTTAAAA+AGG | + | chr6_3:21954688-21954707 | Msa0944880:CDS | 40.0% | |
| GCTAAGGGGAGAGTTAAAAA+GGG | + | chr6_3:21954689-21954708 | Msa0944880:CDS | 40.0% | |
| ! | GGCTTTTGGATCTGGATTTA+AGG | + | chr6_3:21954730-21954749 | Msa0944880:CDS | 40.0% |
| TGTTCATTGGCAATGGAACA+GGG | - | chr6_3:21954838-21954857 | None:intergenic | 40.0% | |
| TTGTTCATTGGCAATGGAAC+AGG | - | chr6_3:21954839-21954858 | None:intergenic | 40.0% | |
| GCTTCAGGGACATAAGTGAT+GGG | - | chr6_3:21951927-21951946 | None:intergenic | 45.0% | |
| TGCTTCAGGGACATAAGTGA+TGG | - | chr6_3:21951928-21951947 | None:intergenic | 45.0% | |
| CTTTGCCAAACGTCTTCTTG+AGG | + | chr6_3:21952208-21952227 | Msa0944880:CDS | 45.0% | |
| CCTTAGTCCTACTCAGATAC+GGG | - | chr6_3:21952869-21952888 | None:intergenic | 45.0% | |
| GTGAGCTTAACTCAGTTGGT+TGG | + | chr6_3:21953285-21953304 | Msa0944880:intron | 45.0% | |
| !!! | TTTTTTTTCGGTAGTGGCCG+GGG | - | chr6_3:21953352-21953371 | None:intergenic | 45.0% |
| TCTCTTTCGAATGGGTGGAT+CGG | + | chr6_3:21954187-21954206 | Msa0944880:CDS | 45.0% | |
| CGATGGATGACTTGAGAGTA+GGG | - | chr6_3:21954216-21954235 | None:intergenic | 45.0% | |
| CCTACTCTCAAGTCATCCAT+CGG | + | chr6_3:21954214-21954233 | Msa0944880:CDS | 45.0% | |
| CGTACACACATAACATCGCT+CGG | + | chr6_3:21954395-21954414 | Msa0944880:CDS | 45.0% | |
| TCCGAAATTGGGAGGACTAA+TGG | - | chr6_3:21954422-21954441 | None:intergenic | 45.0% | |
| ! | CAATTTTGCATGCATACGGG+CGG | + | chr6_3:21954533-21954552 | Msa0944880:CDS | 45.0% |
| ! | TGGCAAATGGCTTTTGGATC+TGG | + | chr6_3:21954722-21954741 | Msa0944880:CDS | 45.0% |
| !!! | ATATTTTTATTTTATCTAAA+AGG | + | chr6_3:21952655-21952674 | Msa0944880:intron | 5.0% |
| !!! | TTTTTTATTTGTATAAATTT+GGG | - | chr6_3:21953047-21953066 | None:intergenic | 5.0% |
| !!! | TTTTTTTATTTGTATAAATT+TGG | - | chr6_3:21953048-21953067 | None:intergenic | 5.0% |
| !! | CAGTGCTGGTGTTATTGCAG+TGG | + | chr6_3:21952184-21952203 | Msa0944880:CDS | 50.0% |
| ACCCTCAAGCTCCAACCTAT+AGG | + | chr6_3:21952843-21952862 | Msa0944880:intron | 50.0% | |
| ! | GCCTATAGGTTGGAGCTTGA+GGG | - | chr6_3:21952847-21952866 | None:intergenic | 50.0% |
| TCAGATACGGGCCTATAGGT+TGG | - | chr6_3:21952857-21952876 | None:intergenic | 50.0% | |
| CTACTCAGATACGGGCCTAT+AGG | - | chr6_3:21952861-21952880 | None:intergenic | 50.0% | |
| CTATAGGCCCGTATCTGAGT+AGG | + | chr6_3:21952859-21952878 | Msa0944880:intron | 50.0% | |
| CCCGTATCTGAGTAGGACTA+AGG | + | chr6_3:21952866-21952885 | Msa0944880:intron | 50.0% | |
| CCAACTGAGTTAAGCTCACG+AGG | - | chr6_3:21953284-21953303 | None:intergenic | 50.0% | |
| CCTCGTGAGCTTAACTCAGT+TGG | + | chr6_3:21953281-21953300 | Msa0944880:intron | 50.0% | |
| CCGATGGATGACTTGAGAGT+AGG | - | chr6_3:21954217-21954236 | None:intergenic | 50.0% | |
| AGTGGTATGGGATGCAGTGC+TGG | + | chr6_3:21952170-21952189 | Msa0944880:CDS | 55.0% | |
| ! | GGCCTATAGGTTGGAGCTTG+AGG | - | chr6_3:21952848-21952867 | None:intergenic | 55.0% |
| AAGATCCGGGGTTCAAACCC+CGG | + | chr6_3:21953332-21953351 | Msa0944880:intron | 55.0% | |
| CATTCGTTGCGCACTCACGT+AGG | + | chr6_3:21954266-21954285 | Msa0944880:CDS | 55.0% | |
| GCGGTAGAGCGGTTCTTGAT+CGG | + | chr6_3:21954552-21954571 | Msa0944880:CDS | 55.0% | |
| TTTGAGCGGCTACGGTCCGA+TGG | - | chr6_3:21954233-21954252 | None:intergenic | 60.0% | |
| CATGCATACGGGCGGTAGAG+CGG | + | chr6_3:21954541-21954560 | Msa0944880:CDS | 60.0% | |
| AGTGGCCGGGGTTTGAACCC+CGG | - | chr6_3:21953340-21953359 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 21951523 | 21955086 | 21951523 | ID=Msa0944880;Name=Msa0944880 |
| chr6_3 | mRNA | 21951523 | 21955086 | 21951523 | ID=Msa0944880-mRNA-1;Parent=Msa0944880;Name=Msa0944880-mRNA-1;_AED=0.01;_eAED=0.01;_QI=53|1|1|1|1|1|2|209|479 |
| chr6_3 | exon | 21951523 | 21952229 | 21951523 | ID=Msa0944880-mRNA-1:exon:6530;Parent=Msa0944880-mRNA-1 |
| chr6_3 | exon | 21954092 | 21955086 | 21954092 | ID=Msa0944880-mRNA-1:exon:6531;Parent=Msa0944880-mRNA-1 |
| chr6_3 | five_prime_UTR | 21951523 | 21951575 | 21951523 | ID=Msa0944880-mRNA-1:five_prime_utr;Parent=Msa0944880-mRNA-1 |
| chr6_3 | CDS | 21951576 | 21952229 | 21951576 | ID=Msa0944880-mRNA-1:cds;Parent=Msa0944880-mRNA-1 |
| chr6_3 | CDS | 21954092 | 21954877 | 21954092 | ID=Msa0944880-mRNA-1:cds;Parent=Msa0944880-mRNA-1 |
| chr6_3 | three_prime_UTR | 21954878 | 21955086 | 21954878 | ID=Msa0944880-mRNA-1:three_prime_utr;Parent=Msa0944880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
