AlfalfaGEDB | Msa0695270

M. sativa cultivar zhongmu-4 / Msa0695270

KEGG: K00924
GO: -
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0695270	XP_013456948.1	98.892	993	11	0	8	1000	7	999	0.0	1993

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0695270	sp\|Q9SGP2\|HSL1_ARATH	70.791	986	279	4	22	1000	13	996	0.0	1429

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0695270	A0A072UMH8	98.892	993	11	0	8	1000	7	999	0.0	1993

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0695270	0.819406	1.180912e-52	-8.615850e-47
Msa0001960	Msa0695270	0.806441	8.213303e-50	-8.615850e-47
Msa0002580	Msa0695270	0.811799	5.844570e-51	-8.615850e-47
Msa0005890	Msa0695270	0.803512	3.364502e-49	-8.615850e-47
Msa0027820	Msa0695270	0.834270	3.301847e-56	-8.615850e-47
Msa0077340	Msa0695270	0.831898	1.285983e-55	-8.615850e-47
Msa0081520	Msa0695270	0.838042	3.636429e-57	-8.615850e-47
Msa0089980	Msa0695270	0.816641	4.980043e-52	-8.615850e-47
Msa0090010	Msa0695270	0.819958	8.837074e-53	-8.615850e-47
Msa0093850	Msa0695270	0.838467	2.825786e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0695270	MtrunA17_Chr4g0046511	98.892	993	11	0	8	1000	7	999	1993
Msa0695270	MtrunA17_Chr2g0282831	73.286	977	238	2	24	1000	18	971	1421
Msa0695270	MtrunA17_Chr2g0324931	60.736	978	368	12	24	996	22	988	1138
Msa0695270	MtrunA17_Chr5g0400701	42.744	1013	509	16	8	969	5	997	764
Msa0695270	MtrunA17_Chr3g0140871	41.675	967	505	15	32	970	27	962	688
Msa0695270	MtrunA17_Chr2g0280191	42.769	975	514	15	7	970	24	965	684
Msa0695270	MtrunA17_Chr5g0400681	41.650	982	484	19	32	970	31	966	677
Msa0695270	MtrunA17_Chr1g0183231	41.194	988	528	20	26	984	24	987	675
Msa0695270	MtrunA17_Chr4g0054521	41.337	987	501	18	32	982	31	975	667
Msa0695270	MtrunA17_Chr6g0487061	40.061	991	544	21	5	968	10	977	651

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0695270	AT1G28440.1	70.791	986	279	4	22	1000	13	996	1429
Msa0695270	AT4G28490.1	58.130	984	389	12	24	992	20	995	1065
Msa0695270	AT5G65710.1	45.118	973	475	16	36	969	36	988	758
Msa0695270	AT5G25930.1	42.399	967	522	20	32	981	30	978	676
Msa0695270	AT4G28650.1	40.217	1012	546	24	1	981	1	984	658
Msa0695270	AT1G09970.1	41.469	926	500	13	56	970	60	954	656
Msa0695270	AT5G65700.1	40.000	990	512	17	40	987	41	990	654
Msa0695270	AT5G65700.2	40.000	990	512	17	40	987	41	990	654
Msa0695270	AT1G09970.2	41.424	927	500	14	56	970	60	955	652
Msa0695270	AT3G49670.1	39.041	1022	539	19	16	998	19	995	644

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Find 314 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATAATAGAGAGAAGT+TGG	0.399688	4_4:+64757026	None:intergenic
AAAATTTCAAGGACTCGAAA+AGG	0.424566	4_4:-64758548	Msa0695270:CDS
AAATCCATGTCCATCATAGC+TGG	0.529626	4_4:-64757943	Msa0695270:CDS
AAATCTTTCTCCCCAAACTC+AGG	0.550190	4_4:+64757401	None:intergenic
AAATTTACCTGCCTCTTGGG+TGG	0.526632	4_4:-64756734	Msa0695270:three_prime_UTR
AAATTTCAAGGACTCGAAAA+GGG	0.553905	4_4:-64758547	Msa0695270:CDS
AACAAGATACAAGATAGCTG+TGG	0.679941	4_4:-64758124	Msa0695270:CDS
AACACCAACTTAAATTTGGT+AGG	0.567490	4_4:+64756870	None:intergenic
AACATCTCTATGAACAATTG+GGG	0.549949	4_4:+64758059	None:intergenic
AACCTCAACTCATACAAATT+TGG	0.259440	4_4:+64759509	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTAACATCTTTAAACCAAGA+AGG	-	chr4_4:64756897-64756916	Msa0695270:three_prime_UTR	30.0%
GTTATTAAAGAGGTTAATGG+AGG	+	chr4_4:64757126-64757145	None:intergenic	30.0%
GGAGTTATTAAAGAGGTTAA+TGG	+	chr4_4:64757129-64757148	None:intergenic	30.0%
GGTTAATGGAGTTATTAAAG+AGG	+	chr4_4:64757136-64757155	None:intergenic	30.0%
AAGAGGAAAAGTTTGGTTAA+TGG	+	chr4_4:64757150-64757169	None:intergenic	30.0%
AGATTTGAAGAGGAAAAGTT+TGG	+	chr4_4:64757157-64757176	None:intergenic	30.0%
AGGTCAAGGTAAATAAGTTT+AGG	+	chr4_4:64757260-64757279	None:intergenic	30.0%
TTATATTTCCAAGTGAAGGT+GGG	+	chr4_4:64757382-64757401	None:intergenic	30.0%
CTAGTTATATTTCCAAGTGA+AGG	+	chr4_4:64757386-64757405	None:intergenic	30.0%
GCTTAAGAAACTTAAGGATT+TGG	-	chr4_4:64757544-64757563	Msa0695270:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	64756662	64760702	64756662	ID=Msa0695270;Name=Msa0695270
chr4_4	mRNA	64756662	64760702	64756662	ID=Msa0695270-mRNA-1;Parent=Msa0695270;Name=Msa0695270-mRNA-1;_AED=0.01;_eAED=0.01;_QI=172\|1\|1\|1\|1\|1\|2\|465\|1000
chr4_4	exon	64756662	64757518	64756662	ID=Msa0695270-mRNA-1:exon:18586;Parent=Msa0695270-mRNA-1
chr4_4	exon	64757920	64760702	64757920	ID=Msa0695270-mRNA-1:exon:18585;Parent=Msa0695270-mRNA-1
chr4_4	five_prime_UTR	64760531	64760702	64760531	ID=Msa0695270-mRNA-1:five_prime_utr;Parent=Msa0695270-mRNA-1
chr4_4	CDS	64757920	64760530	64757920	ID=Msa0695270-mRNA-1:cds;Parent=Msa0695270-mRNA-1
chr4_4	CDS	64757127	64757518	64757127	ID=Msa0695270-mRNA-1:cds;Parent=Msa0695270-mRNA-1
chr4_4	three_prime_UTR	64756662	64757126	64756662	ID=Msa0695270-mRNA-1:three_prime_utr;Parent=Msa0695270-mRNA-1

Gene Sequence

>Msa0695270

ATGGAAAAAAAACAACTTCCTCTGTTCTGCATTATCCTAACAATCTTAACCCTTGCAACAAACGTAACATCTTTAAACCAAGAAGGTTTATACCTCTACCAATTCAAACTCACCTTAGACGATCCAGACTCAACACTCTCTTCATGGAACCCACGAGACACAACACCTTGTAACTGGTACGGTGTACGCTGTGACTCCACAAACACCACCGTAACTGAACTTAATCTCTCCAACACCAACATTCAAGGTCCATTTACAGCCTCAATCCTCTGCCGTTTACCTAATCTCTCCTCCATTAACCTCTTTAATAACTCCATTAACCAAACTTTTCCTCTTCAAATCTCTCTCTGCCAAAATCTCATTCACCTTGATCTCTCTCAGAATCTTCTAACCGGTTCTCTTCCAGAAACTTTACCGCTTCTTCCTAAACTTATTTACCTTGACCTTACCGGTAATAATTTCTCAGGTCCTATACCTTTATCTTTCGGATCATTTAAATCACTTGAAATACTTTCTTTAGTTTCAAATCTTCTAGAAGGTACTATCCCACCTTCACTTGGAAATATAACTAGTTTGAAAATGCTTAACCTCTCTTACAACCCGTTTTATCCGGGTCGGATTCCACCGGAGATTGGTAATTTAACAAACCTTGAAGTGCTTTGGTTAACACAATGCAACCTTGTTGGTGTTATTCCTGAAACACTTGGGAAGCTTAAGAAACTTAAGGATTTGGACCTTGCTTTAAATGATTTATATGGTTCTATTCCGAGTTCGCTCACTGAGTTAACGAGTTTGATGCAGATTGAGTTGTATAATAACTCGTTATCGGGTGAGTTACCGAAGGGAATGGGGAACTTGAGTTCTCTACGGCTTCTTGATGCGTCAATGAATCATTTAACGGGGAGGATTCCGGCTGAGCTTTGTTCATTGCCGTTGGAGAGTTTGAATCTTTATGAGAATCGTTTTGAAGGTGAGTTACCGGCGAGTATAGCGAACTCACCAAATTTGTATGAGTTGAGGTTGTTTGGAAACCGGTTAACTGGAAGGTTGCCGGAGAATTTGGGGAAACGGTCGCCGTTGAGGTGGCTTGATGTTTCGAGTAATCAGTTTTGGGGGAATATTCCGGCGAGTTTGTGTGATTTTGGTGAGTTGGAGGAGGTATTGATGATATATAATTTGTTTACCGGTGAGATTCCGGCGAGTTTGGGGACTTGTCAGAGTTTGACGCGTGTGAGATTGGGTTATAATCGGTTTTCCGGTGAGGTTCCGGCTGGGATCTGGGGTCTTCCTCATGTGTATCTTCTTGAGCTTGCTCATAACTCGTTTTCCGGTTCTATTTCGAAGACTATTGCAGGAGCTGGGAACCTTTCGCTGTTGATATTGTCGAAGAATAATTTATCTGGAACTGTTCCTGATGAGGTTGGGTGGTTGGAAAATCTTGTTGAGTTTTCTGCTAGTGATAATATGTTCACTGGTTCACTTCCTGATAGTTTGGTGAATCTTGGCCAGCTTGGGATTCTTGATTTTCACAACAATAGGCTCTCTGGGGAACTACCAAAGGGGATTCATAGTTGGAAGAAGTTGAATGATTTGAATTTGGCTAACAATGAGATTGGTGGGAAGATTCCTGATGAGATTGGGAGTTTGTCTGTGCTTAATTTTCTTGATCTTTCTAGGAATCAGTTTTCTGGGAAAATCCCTCATGGATTGCAAAATCTGAAGCTTAATCAGCTTAATTTGTCGTATAATCGTTTTTCTGGAGAATTACCCCCTCAATTGGCTAAGGAAATGTATAGGTTAAGTTTCCTTGGGAATCCTGGTTTGTGTGGAGATTTAAAAGGATTGTGTGATGGTAGGAGTGAAGTGAAGAGTTTGGGTTATGTTTGGTTGCTTCGAGCTATTTTTGTTCTTGCTCTTTTGGTGTTCTTAGTTGGTGTTGTTTGGTTTTACTTTAGGTACAAAAATTTCAAGGACTCGAAAAGGGCTATTGATAAATCGAAATGGACTTTGATGTCGTTTCATAAACTGGGTTTTGGCGAAGATGAAATTTTGAATTGTCTTGACGAAGATAGTGTCATTGGAAGTGGTTCTTCCGGTAAGGTTTACAAGGTTGTACTTAACAGTGGAGAAGCTGTTGCTGTGAAGAAGATATGGGGAGGGGCTAGGAAGGAAGTAGAGAGTGGAGATGTTGAGAAAGGTAGGGTTCAAGACAACGCTTTTGATGCAGAGGTTGAAACATTGGGAAAAATTAGACACAAGAACATTGTCAAGCTATGGTGTTGCTGTACCACAAGGGATTGCCAGCTCTTGGTTTATGAGTATATGCAAAATGGTAGTCTTGGTGATTTGCTTCATAGCAGTAAAGGAGGGTTGTTGGATTGGCCAACAAGATACAAGATAGCTGTGGATGCTGCAGATGGACTCTCTTATCTTCATCATGACTGTGTTCCCCCAATTGTTCATAGAGATGTTAAATCTAACAATATCTTGCTGGATGGAGACTTTGGTGCAAGGGTGGCAGATTTTGGACTTGCTAAAGTAGTCGAAACCACTGCGAAAGGAATTAAATCCATGTCCATCATAGCTGGTTCTTGTGGCTATATCGCACCAGAATATGCATACACACTCAAAGTGAACGAGAAGAGCGACATTTATAGTTTTGGTGTTGTTATACTTGAATTAGTTACTGGAAGACGTCCTGTGGATCCTGAGTTTGGGGAGAAAGATTTGGTTAAATGGGTTTGCACTACATTGGATCAGAAAGGTGTAGACCATGTACTTGACTCAAGGCTTGATACATGTTTCAAAGAAGAAATTTGCAAGGTCTTCAACATTGGTCTCATGTGTACTAGTCCTCTTCCAATCAACCGGCCTTCAATGAGAAGAGTAGTGAAGATGTTGCAAGAGGTAGGAATAGAGAACCAAATGAAACCTGCCAAGAAAGATGGTAAATTATCCCCTTATTACTATGATGATGCCTCAGACCATGGAAGTGTTGCTTGA

Protein sequence

>Msa0695270

MEKKQLPLFCIILTILTLATNVTSLNQEGLYLYQFKLTLDDPDSTLSSWNPRDTTPCNWYGVRCDSTNTTVTELNLSNTNIQGPFTASILCRLPNLSSINLFNNSINQTFPLQISLCQNLIHLDLSQNLLTGSLPETLPLLPKLIYLDLTGNNFSGPIPLSFGSFKSLEILSLVSNLLEGTIPPSLGNITSLKMLNLSYNPFYPGRIPPEIGNLTNLEVLWLTQCNLVGVIPETLGKLKKLKDLDLALNDLYGSIPSSLTELTSLMQIELYNNSLSGELPKGMGNLSSLRLLDASMNHLTGRIPAELCSLPLESLNLYENRFEGELPASIANSPNLYELRLFGNRLTGRLPENLGKRSPLRWLDVSSNQFWGNIPASLCDFGELEEVLMIYNLFTGEIPASLGTCQSLTRVRLGYNRFSGEVPAGIWGLPHVYLLELAHNSFSGSISKTIAGAGNLSLLILSKNNLSGTVPDEVGWLENLVEFSASDNMFTGSLPDSLVNLGQLGILDFHNNRLSGELPKGIHSWKKLNDLNLANNEIGGKIPDEIGSLSVLNFLDLSRNQFSGKIPHGLQNLKLNQLNLSYNRFSGELPPQLAKEMYRLSFLGNPGLCGDLKGLCDGRSEVKSLGYVWLLRAIFVLALLVFLVGVVWFYFRYKNFKDSKRAIDKSKWTLMSFHKLGFGEDEILNCLDEDSVIGSGSSGKVYKVVLNSGEAVAVKKIWGGARKEVESGDVEKGRVQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDCQLLVYEYMQNGSLGDLLHSSKGGLLDWPTRYKIAVDAADGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARVADFGLAKVVETTAKGIKSMSIIAGSCGYIAPEYAYTLKVNEKSDIYSFGVVILELVTGRRPVDPEFGEKDLVKWVCTTLDQKGVDHVLDSRLDTCFKEEICKVFNIGLMCTSPLPINRPSMRRVVKMLQEVGIENQMKPAKKDGKLSPYYYDDASDHGSVA*