AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0957680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0957680 MtrunA17_Chr6g0474961 91.765 85 7 0 53 137 159 243 1.12e-42 140
Msa0957680 MtrunA17_Chr6g0474991 91.765 85 7 0 53 137 107 191 1.64e-42 139
Msa0957680 MtrunA17_Chr6g0474871 94.118 85 5 0 53 137 809 893 8.17e-41 144
Msa0957680 MtrunA17_Chr6g0474901 92.941 85 6 0 53 137 810 894 1.58e-40 143
Msa0957680 MtrunA17_Chr6g0474811 92.941 85 6 0 53 137 817 901 3.45e-40 142
Msa0957680 MtrunA17_Chr6g0474861 91.765 85 7 0 53 137 530 614 7.42e-40 140
Msa0957680 MtrunA17_Chr6g0475091 89.286 84 9 0 53 136 825 908 3.57e-37 134
Msa0957680 MtrunA17_Chr6g0475131 63.529 85 21 1 53 137 253 327 1.87e-31 114
Msa0957680 MtrunA17_Chr6g0475181 60.920 87 21 1 51 137 57 130 5.43e-31 107
Msa0957680 MtrunA17_Chr6g0475201 63.218 87 19 1 51 137 816 889 6.96e-30 113
Msa0957680 MtrunA17_Chr6g0474851 95.918 49 2 0 53 101 172 220 1.51e-27 102
Msa0957680 MtrunA17_Chr1g0206261 57.471 87 34 1 51 137 329 412 1.25e-25 99.8
Msa0957680 MtrunA17_Chr8g0347571 53.488 86 40 0 52 137 812 897 4.46e-25 99.4
Msa0957680 MtrunA17_Chr1g0206321 59.302 86 34 1 53 137 75 160 1.23e-23 89.7
Msa0957680 MtrunA17_Chr6g0475111 50.000 90 45 0 48 137 825 914 1.30e-19 83.6
Msa0957680 MtrunA17_Chr1g0206331 52.857 70 30 1 53 119 578 647 1.08e-17 78.2
Msa0957680 MtrunA17_Chr1g0206351 60.000 55 22 0 53 107 596 650 1.72e-17 77.8
Msa0957680 MtrunA17_Chr5g0393981 44.186 86 45 2 53 137 639 722 1.95e-16 74.7
Msa0957680 MtrunA17_Chr1g0206421 47.945 73 38 0 53 125 468 540 1.71e-15 72.0
Msa0957680 MtrunA17_Chr1g0206231 41.176 85 44 1 53 137 589 667 1.83e-14 68.9
Msa0957680 MtrunA17_Chr3g0119041 43.548 62 35 0 53 114 583 644 6.34e-14 67.4
Msa0957680 MtrunA17_Chr1g0206361 43.678 87 48 1 51 137 584 669 9.83e-14 67.0
Msa0957680 MtrunA17_Chr1g0206221 42.857 77 39 1 53 124 68 144 2.00e-13 63.2
Msa0957680 MtrunA17_Chr5g0428511 42.857 70 37 2 51 117 24 93 4.57e-13 61.2
Msa0957680 MtrunA17_Chr5g0394001 50.588 85 42 0 53 137 573 657 5.17e-13 64.7
Msa0957680 MtrunA17_Chr8g0354331 40.000 85 43 3 53 137 343 419 6.88e-13 64.3
Msa0957680 MtrunA17_Chr5g0428551 40.426 94 49 2 51 137 67 160 8.67e-13 61.6
Msa0957680 MtrunA17_Chr2g0318831 41.176 85 37 3 53 137 746 817 4.90e-12 62.0
Msa0957680 MtrunA17_Chr5g0428581 39.474 76 42 1 51 122 284 359 5.14e-12 61.6
Msa0957680 MtrunA17_Chr1g0154311 44.000 75 41 1 49 122 589 663 6.52e-12 61.6
Msa0957680 MtrunA17_Chr1g0154331 40.789 76 41 1 49 120 277 352 1.18e-11 60.8
Msa0957680 MtrunA17_Chr4g0023221 36.585 82 40 2 53 132 971 1042 1.27e-11 60.8
Msa0957680 MtrunA17_Chr8g0354431 60.000 45 18 0 53 97 585 629 1.44e-11 60.8
Msa0957680 MtrunA17_Chr1g0154371 38.356 73 42 2 53 122 598 670 1.82e-11 60.5
Msa0957680 MtrunA17_Chr8g0354391 40.000 85 44 2 53 137 177 254 2.19e-11 59.3
Msa0957680 MtrunA17_Chr1g0206551 43.056 72 37 1 53 120 278 349 2.54e-11 59.7
Msa0957680 MtrunA17_Chr4g0048801 45.070 71 38 1 53 123 761 830 3.14e-11 59.7
Msa0957680 MtrunA17_Chr6g0453561 42.353 85 42 3 53 137 110 187 5.22e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0957680 AT4G23140.1 41.975 81 42 1 35 115 580 655 7.83e-14 67.4
Msa0957680 AT4G23140.2 41.975 81 42 1 35 115 586 661 8.07e-14 67.4
Msa0957680 AT4G11470.1 38.824 85 52 0 53 137 582 666 8.44e-14 67.4
Msa0957680 AT4G11470.2 38.824 85 52 0 53 137 587 671 8.61e-14 67.4
Msa0957680 AT4G23160.1 37.079 89 51 1 35 123 588 671 1.73e-13 66.6
Msa0957680 AT4G23150.1 35.922 103 58 2 35 137 565 659 4.20e-13 65.5
Msa0957680 AT4G11480.1 36.471 85 54 0 53 137 572 656 1.36e-12 63.9
Msa0957680 AT4G11480.3 36.471 85 54 0 53 137 567 651 1.39e-12 63.9
Msa0957680 AT4G11480.4 36.471 85 54 0 53 137 564 648 1.40e-12 63.9
Msa0957680 AT4G23180.1 41.538 65 38 0 50 114 587 651 1.96e-12 63.5
Msa0957680 AT4G21400.8 40.230 87 45 1 51 137 493 572 4.26e-12 62.4
Msa0957680 AT4G23290.1 38.824 85 52 0 53 137 563 647 4.87e-12 62.4
Msa0957680 AT4G21410.1 41.379 87 44 2 51 137 475 554 4.90e-12 62.4
Msa0957680 AT4G21400.7 40.230 87 45 1 51 137 594 673 5.04e-12 62.4
Msa0957680 AT4G21400.1 40.230 87 45 1 51 137 604 683 5.20e-12 62.4
Msa0957680 AT4G23290.2 53.191 47 22 0 53 99 606 652 5.52e-12 62.4
Msa0957680 AT4G21400.2 40.230 87 45 1 51 137 592 671 5.55e-12 62.4
Msa0957680 AT4G21410.3 41.379 87 44 2 51 137 600 679 6.75e-12 62.0

Find 20 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCTGAGAGCTCTGCAAC+TGG 0.355815 6_3:+69693758 None:intergenic
GTCTCATGTTCATCGGAATC+TGG 0.397790 6_3:-69693835 Msa0957680:CDS
GAATGAAAAGGCGAGTGTTA+TGG 0.434353 6_3:-69693884 Msa0957680:CDS
TGAGAATAGTGCAGAACTAT+TGG 0.436071 6_3:+69691369 None:intergenic
GTCATTAAGTGCATTCAGAT+TGG 0.443846 6_3:-69691562 Msa0957680:CDS
ACGATCGAAGGTCTAGCATC+CGG 0.503607 6_3:+69691517 None:intergenic
GATTCGAAAAGAGAATGAAA+AGG 0.522866 6_3:-69693896 None:intergenic
CGATCGAAGGTCTAGCATCC+GGG 0.557087 6_3:+69691518 None:intergenic
CTGCAACTGGCTCGTCGGAG+AGG 0.581724 6_3:+69693771 None:intergenic
TAGTTAAGTCTCATGTTCAT+CGG 0.587472 6_3:-69693842 Msa0957680:CDS
GAGCTCTGCAACTGGCTCGT+CGG 0.599177 6_3:+69693766 None:intergenic
GCAGAGCTCTCAGAGAGAGA+AGG 0.599648 6_3:-69693752 Msa0957680:intron
TGATTCTTGTGCGAGAACGT+CGG 0.608938 6_3:+69691408 None:intergenic
CGGAGAGGATGAAGAACGGT+CGG 0.614781 6_3:+69693786 None:intergenic
GAAGCAACTGTCACGATCGA+AGG 0.616528 6_3:+69691505 None:intergenic
TCATCGGAATCTGGAGATGA+CGG 0.620923 6_3:-69693826 Msa0957680:CDS
TAAAATTTAATAAACTATCG+AGG 0.651539 6_3:+69691316 None:intergenic
ATTATGTGTTCAAAATGACC+CGG 0.665360 6_3:-69691536 Msa0957680:CDS
TCGTCGGAGAGGATGAAGAA+CGG 0.699119 6_3:+69693782 None:intergenic
TCGGAATCTGGAGATGACGG+CGG 0.721792 6_3:-69693823 Msa0957680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAATTTTATGTTAAAAAAT+TGG - chr6_3:69691897-69691916 Msa0957680:intron 10.0%
!! ATATATATATTTATCATCAT+AGG + chr6_3:69693366-69693385 None:intergenic 10.0%
!! GTGAAATTAAATTTAATATT+TGG + chr6_3:69693616-69693635 None:intergenic 10.0%
!! AAATTAGAATGTAAAGATTT+AGG - chr6_3:69692420-69692439 Msa0957680:intron 15.0%
!!! TTTTGATTAAGAAAAAGAAA+AGG + chr6_3:69692758-69692777 None:intergenic 15.0%
!! AAGTATGATTAAATTTCATT+AGG + chr6_3:69692782-69692801 None:intergenic 15.0%
!!! AAAATGTTTTTGTTTTTTGT+TGG + chr6_3:69692911-69692930 None:intergenic 15.0%
!!! ACAAAAAACAAAAACATTTT+TGG - chr6_3:69692911-69692930 Msa0957680:intron 15.0%
!!! TTTTATTTTAGTTGAATTGA+AGG + chr6_3:69692994-69693013 None:intergenic 15.0%
!! AAATTTCTCAATTATTATCT+TGG + chr6_3:69693533-69693552 None:intergenic 15.0%
!!! TTTTTCTAATACTTTTACAC+TGG - chr6_3:69691831-69691850 Msa0957680:intron 20.0%
!! GTTAAAAAATTGGTGAAAAT+TGG - chr6_3:69691907-69691926 Msa0957680:intron 20.0%
!! TGTAGTTAAATAATGCAAAT+AGG - chr6_3:69692067-69692086 Msa0957680:intron 20.0%
!!! CTAAACCTTTAAAAATGTAT+TGG - chr6_3:69692155-69692174 Msa0957680:intron 20.0%
!!! ACATTCCAATACATTTTTAA+AGG + chr6_3:69692163-69692182 None:intergenic 20.0%
!!! ATACTTTTCTTAATAAACCT+TGG - chr6_3:69692710-69692729 Msa0957680:intron 20.0%
!!! TACTTTTCTTAATAAACCTT+GGG - chr6_3:69692711-69692730 Msa0957680:intron 20.0%
!! AAAGAAAAGGAAAATTCAAT+GGG + chr6_3:69692745-69692764 None:intergenic 20.0%
!! AAAAGAAAAGGAAAATTCAA+TGG + chr6_3:69692746-69692765 None:intergenic 20.0%
!!! AATTAGTGATTTGTAAAATG+TGG + chr6_3:69692808-69692827 None:intergenic 20.0%
!! ATGAGATTAAAAAAAATGTG+AGG + chr6_3:69692834-69692853 None:intergenic 20.0%
!!! TTGATTTTAGGTTTGAAAAT+GGG + chr6_3:69692888-69692907 None:intergenic 20.0%
!!! GTGATATCTTATTTTTTCTT+GGG + chr6_3:69693230-69693249 None:intergenic 20.0%
!! AAGAAAAAATAAGATATCAC+CGG - chr6_3:69693230-69693249 Msa0957680:intron 20.0%
!!! TATATTTTCTGATCGAATTT+CGG - chr6_3:69693426-69693445 Msa0957680:intron 20.0%
!!! TAAATTTAATTTCACGTTTC+AGG - chr6_3:69693621-69693640 Msa0957680:intron 20.0%
!!! ATTCTCAAACAATCAATTTT+CGG - chr6_3:69693859-69693878 Msa0957680:CDS 20.0%
! ATTGCTTATATAAAGGTTCT+AGG + chr6_3:69691528-69691547 None:intergenic 25.0%
! CTTTATATAAGCAATTGAAC+CGG - chr6_3:69691533-69691552 Msa0957680:CDS 25.0%
!!! TTGCTGTTTTTTTTCGTTTT+TGG - chr6_3:69691692-69691711 Msa0957680:intron 25.0%
! AAGAAAACATCAAGAAAACA+TGG + chr6_3:69691806-69691825 None:intergenic 25.0%
!! ATGTTTTCTTGATGTTTTCT+TGG - chr6_3:69691805-69691824 Msa0957680:intron 25.0%
! TATTGGAATGTGAGAATTAT+AGG - chr6_3:69692172-69692191 Msa0957680:intron 25.0%
! ATATGAGACATGAAATGAAA+TGG + chr6_3:69692315-69692334 None:intergenic 25.0%
! TAAAGTGCAAGAAATTAAAG+TGG + chr6_3:69692382-69692401 None:intergenic 25.0%
! GTATGTTTAGATGAATGATT+AGG - chr6_3:69692632-69692651 Msa0957680:intron 25.0%
! TGATGTTGTTCATATTTGTT+TGG + chr6_3:69692685-69692704 None:intergenic 25.0%
! AGATTAAAAAAAATGTGAGG+TGG + chr6_3:69692831-69692850 None:intergenic 25.0%
!!! GTTGATTTTAGGTTTGAAAA+TGG + chr6_3:69692889-69692908 None:intergenic 25.0%
!!! GTTTTTTGTTGGTTGATTTT+AGG + chr6_3:69692900-69692919 None:intergenic 25.0%
! AAGTGTTTATTGAACCTAAA+GGG + chr6_3:69693058-69693077 None:intergenic 25.0%
!! AAAGTGTTTATTGAACCTAA+AGG + chr6_3:69693059-69693078 None:intergenic 25.0%
!!! ATCTTATTTTTTCTTGGGAA+GGG + chr6_3:69693225-69693244 None:intergenic 25.0%
!!! TATCTTATTTTTTCTTGGGA+AGG + chr6_3:69693226-69693245 None:intergenic 25.0%
!!! GGTGATATCTTATTTTTTCT+TGG + chr6_3:69693231-69693250 None:intergenic 25.0%
!!! ATTGTTTTATCTTGGTTTTC+GGG + chr6_3:69693289-69693308 None:intergenic 25.0%
!!! CATTGTTTTATCTTGGTTTT+CGG + chr6_3:69693290-69693309 None:intergenic 25.0%
!!! AAGAGATCATTGTTTTATCT+TGG + chr6_3:69693297-69693316 None:intergenic 25.0%
! TCTTAACTCTTTGATTACTA+GGG + chr6_3:69693468-69693487 None:intergenic 25.0%
! TTCTTAACTCTTTGATTACT+AGG + chr6_3:69693469-69693488 None:intergenic 25.0%
!! GAAATTTAATTTCACGTTTC+AGG - chr6_3:69693546-69693565 Msa0957680:intron 25.0%
!! TCAAACACCTATAAGTATTT+TGG - chr6_3:69693588-69693607 Msa0957680:intron 25.0%
TAGTTAAGTCTCATGTTCAT+CGG - chr6_3:69691370-69691389 Msa0957680:CDS 30.0%
!! TTATATAAAGGTTCTAGGAC+CGG + chr6_3:69691523-69691542 None:intergenic 30.0%
CGGTTCAATTGCTTATATAA+AGG + chr6_3:69691535-69691554 None:intergenic 30.0%
ACGAAAAAAAACAGCAAGAA+GGG + chr6_3:69691689-69691708 None:intergenic 30.0%
AACGAAAAAAAACAGCAAGA+AGG + chr6_3:69691690-69691709 None:intergenic 30.0%
GAAAACATGGAAAAATGCTT+TGG + chr6_3:69691793-69691812 None:intergenic 30.0%
TCAAAATCATGTTCAAACAG+TGG + chr6_3:69692000-69692019 None:intergenic 30.0%
TTAGAATCAAGTCTTGGAAT+GGG + chr6_3:69692139-69692158 None:intergenic 30.0%
! TTTAGAATCAAGTCTTGGAA+TGG + chr6_3:69692140-69692159 None:intergenic 30.0%
! AAAGGTTTAGAATCAAGTCT+TGG + chr6_3:69692145-69692164 None:intergenic 30.0%
TGTGAGAATTATAGGTCATA+TGG - chr6_3:69692180-69692199 Msa0957680:intron 30.0%
ATAGAAAATGAGTGCAAACA+TGG + chr6_3:69692233-69692252 None:intergenic 30.0%
AGAGAAACACTAGAACATAA+AGG + chr6_3:69692256-69692275 None:intergenic 30.0%
ATTAAAGTGGAGAAAGAGAT+GGG + chr6_3:69692369-69692388 None:intergenic 30.0%
AATTAAAGTGGAGAAAGAGA+TGG + chr6_3:69692370-69692389 None:intergenic 30.0%
!!! CTTCCATGCTTTTAATTTCT+TGG - chr6_3:69692461-69692480 Msa0957680:intron 30.0%
TTGCCAAGAAATTAAAAGCA+TGG + chr6_3:69692467-69692486 None:intergenic 30.0%
!!! CTTTTAATTTCTTGGCAAAG+AGG - chr6_3:69692469-69692488 Msa0957680:intron 30.0%
! ATTGGCCTAAATACATTCTA+TGG + chr6_3:69692495-69692514 None:intergenic 30.0%
TTTAGGCCAATGATGTAATA+AGG - chr6_3:69692504-69692523 Msa0957680:intron 30.0%
CATTGTCCTTATTACATCAT+TGG + chr6_3:69692513-69692532 None:intergenic 30.0%
CAATGATGTAATAAGGACAA+TGG - chr6_3:69692511-69692530 Msa0957680:intron 30.0%
! TTCTAGCTATATACCTAAAG+TGG + chr6_3:69692583-69692602 None:intergenic 30.0%
GCATGTTTAGATGTATGTTT+AGG - chr6_3:69692606-69692625 Msa0957680:intron 30.0%
GGAATTTGAAGAATAGAAAG+AGG + chr6_3:69692867-69692886 None:intergenic 30.0%
!! ACATTTTTGGAAGAGAACTA+CGG - chr6_3:69692924-69692943 Msa0957680:intron 30.0%
ATTCTAAGTGAAGAATTGGA+GGG + chr6_3:69693035-69693054 None:intergenic 30.0%
AATTTAAAGACGGTTCCTAT+AGG - chr6_3:69693112-69693131 Msa0957680:intron 30.0%
TAACGACTATAGTATCCTAT+AGG + chr6_3:69693130-69693149 None:intergenic 30.0%
ATAGGATACTATAGTCGTTA+TGG - chr6_3:69693130-69693149 Msa0957680:intron 30.0%
TAGGATACTATAGTCGTTAT+GGG - chr6_3:69693131-69693150 Msa0957680:intron 30.0%
!! TAAGATATCACCGGTTTAAA+AGG - chr6_3:69693239-69693258 Msa0957680:intron 30.0%
! TACGTTTGAACCTTTTAAAC+CGG + chr6_3:69693252-69693271 None:intergenic 30.0%
! TTAATTTCACGTTTCAGGTA+TGG - chr6_3:69693551-69693570 Msa0957680:intron 30.0%
TTTGGGTCCAAAATACTTAT+AGG + chr6_3:69693598-69693617 None:intergenic 30.0%
ATTATGTGTTCAAAATGACC+CGG - chr6_3:69693676-69693695 Msa0957680:intron 30.0%
AGAGAAGGGAAATGAACAAA+TGG - chr6_3:69691491-69691510 Msa0957680:CDS 35.0%
AGGGAAATGAACAAATGGAT+TGG - chr6_3:69691496-69691515 Msa0957680:CDS 35.0%
!! AATGAACAAATGGATTGGAC+CGG - chr6_3:69691501-69691520 Msa0957680:CDS 35.0%
! GAAACAAGTTGAAATGAACC+AGG + chr6_3:69691570-69691589 None:intergenic 35.0%
CACTCTTGACCTAAATCTAA+CGG + chr6_3:69691597-69691616 None:intergenic 35.0%
!! AAAAGATTTTGACACACAGG+AGG + chr6_3:69691760-69691779 None:intergenic 35.0%
!! TGCAAAAGATTTTGACACAC+AGG + chr6_3:69691763-69691782 None:intergenic 35.0%
AACAGTGGCTAAGAAGTTAT+AGG + chr6_3:69691985-69692004 None:intergenic 35.0%
TTAAGGCAACATGATTCACT+TGG + chr6_3:69692114-69692133 None:intergenic 35.0%
AAGTCTTGGAATGGGAATTA+AGG + chr6_3:69692131-69692150 None:intergenic 35.0%
GCAACACATGACAATATCAA+AGG + chr6_3:69692289-69692308 None:intergenic 35.0%
AGAGGCCATAGAATGTATTT+AGG - chr6_3:69692487-69692506 Msa0957680:intron 35.0%
! TTTTTAATCTCATGCCCTTG+AGG - chr6_3:69692841-69692860 Msa0957680:intron 35.0%
GATTCTAAGTGAAGAATTGG+AGG + chr6_3:69693036-69693055 None:intergenic 35.0%
AGGGATTCTAAGTGAAGAAT+TGG + chr6_3:69693039-69693058 None:intergenic 35.0%
TCTTCACTTAGAATCCCTTT+AGG - chr6_3:69693041-69693060 Msa0957680:intron 35.0%
GTCATTAAGTGCATTCAGAT+TGG - chr6_3:69693650-69693669 Msa0957680:intron 35.0%
! AAGAAAAACGCAGGTTCTTT+TGG + chr6_3:69693767-69693786 None:intergenic 35.0%
TGAGAATAGTGCAGAACTAT+TGG + chr6_3:69693846-69693865 None:intergenic 35.0%
AGAAGGTCTTAGAGAGAGAA+GGG - chr6_3:69691477-69691496 Msa0957680:CDS 40.0%
TATAAGCAATTGAACCGGAC+CGG - chr6_3:69691538-69691557 Msa0957680:CDS 40.0%
GAAATGAACCAGGATTGAAC+CGG + chr6_3:69691560-69691579 None:intergenic 40.0%
GTTTCCTTGCCGTTAGATTT+AGG - chr6_3:69691585-69691604 Msa0957680:intron 40.0%
TTGACCTAAATCTAACGGCA+AGG + chr6_3:69691592-69691611 None:intergenic 40.0%
GATTTAGGTCAAGAGTGATC+TGG - chr6_3:69691600-69691619 Msa0957680:intron 40.0%
TTTCTTGCTAATTACACCCC+TGG - chr6_3:69691719-69691738 Msa0957680:intron 40.0%
TTCTTGCTAATTACACCCCT+GGG - chr6_3:69691720-69691739 Msa0957680:intron 40.0%
GAATGAAATGGGAACGCTTA+TGG + chr6_3:69692341-69692360 None:intergenic 40.0%
GATGGGATGTGGAATGAAAT+GGG + chr6_3:69692352-69692371 None:intergenic 40.0%
AGATGGGATGTGGAATGAAA+TGG + chr6_3:69692353-69692372 None:intergenic 40.0%
!! TCAATGGGATTTTGATCCCA+AGG + chr6_3:69692730-69692749 None:intergenic 40.0%
AGAATAGAAAGAGGCCTCAA+GGG + chr6_3:69692858-69692877 None:intergenic 40.0%
AAGAATAGAAAGAGGCCTCA+AGG + chr6_3:69692859-69692878 None:intergenic 40.0%
!! TTTTTGGAAGAGAACTACGG+TGG - chr6_3:69692927-69692946 Msa0957680:intron 40.0%
! GGTGGATTTGATCCCTTAAA+CGG - chr6_3:69692945-69692964 Msa0957680:intron 40.0%
GTGGATTTGATCCCTTAAAC+GGG - chr6_3:69692946-69692965 Msa0957680:intron 40.0%
! TGGAGGGAGAAGAATGTTTT+TGG + chr6_3:69693019-69693038 None:intergenic 40.0%
GTCTCATGTTCATCGGAATC+TGG - chr6_3:69691377-69691396 Msa0957680:CDS 45.0%
TCATCGGAATCTGGAGATGA+CGG - chr6_3:69691386-69691405 Msa0957680:CDS 45.0%
GAGAAGGTCTTAGAGAGAGA+AGG - chr6_3:69691476-69691495 Msa0957680:CDS 45.0%
ACATGCACACACACCACTTT+AGG - chr6_3:69692567-69692586 Msa0957680:intron 45.0%
TTGCCTACGTACCCGTTTAA+GGG + chr6_3:69692960-69692979 None:intergenic 45.0%
GCGCGCGTAGAATTTAAAGA+CGG - chr6_3:69693102-69693121 Msa0957680:intron 45.0%
!! TTTCGCTATGGGAAGGTGTT+AGG + chr6_3:69693159-69693178 None:intergenic 45.0%
!! GAGTTGTTTTCGCTATGGGA+AGG + chr6_3:69693166-69693185 None:intergenic 45.0%
AGCAAATCCCTTGAGAATCG+AGG + chr6_3:69693194-69693213 None:intergenic 45.0%
!!! AACGCAGGTTCTTTTGGAGT+TGG + chr6_3:69693761-69693780 None:intergenic 45.0%
! GAACCTGCGTTTTTCTTGCA+TGG - chr6_3:69693770-69693789 Msa0957680:CDS 45.0%
TGATTCTTGTGCGAGAACGT+CGG + chr6_3:69693807-69693826 None:intergenic 45.0%
!!! AATTTTGATAAAAAATATAT+AGG - chr6_3:69691855-69691874 Msa0957680:intron 5.0%
!! TGAAATTAAATTTAATATTT+GGG + chr6_3:69693615-69693634 None:intergenic 5.0%
TCGTCGGAGAGGATGAAGAA+CGG + chr6_3:69691433-69691452 None:intergenic 50.0%
TCCAGAACCCGATGCTTCTT+TGG - chr6_3:69691655-69691674 Msa0957680:intron 50.0%
CCAGAACCCGATGCTTCTTT+GGG - chr6_3:69691656-69691675 Msa0957680:intron 50.0%
AAAACAGCAAGAAGGGACCC+AGG + chr6_3:69691682-69691701 None:intergenic 50.0%
!! TTTTGACACACAGGAGGTGC+AGG + chr6_3:69691754-69691773 None:intergenic 50.0%
GTGGAGAAAGAGATGGGATG+TGG + chr6_3:69692363-69692382 None:intergenic 50.0%
AGTGGTGTGTGTGCATGTGT+CGG + chr6_3:69692565-69692584 None:intergenic 50.0%
GATCCCTTAAACGGGTACGT+AGG - chr6_3:69692954-69692973 Msa0957680:intron 50.0%
CTTGCCTACGTACCCGTTTA+AGG + chr6_3:69692961-69692980 None:intergenic 50.0%
CTTAAACGGGTACGTAGGCA+AGG - chr6_3:69692959-69692978 Msa0957680:intron 50.0%
!! CCGGGAGTTGTTTTCGCTAT+GGG + chr6_3:69693170-69693189 None:intergenic 50.0%
CCCATAGCGAAAACAACTCC+CGG - chr6_3:69693167-69693186 Msa0957680:intron 50.0%
!! TCCGGGAGTTGTTTTCGCTA+TGG + chr6_3:69693171-69693190 None:intergenic 50.0%
ATCCCTTGAGAATCGAGGTC+CGG + chr6_3:69693189-69693208 None:intergenic 50.0%
! CGTTTCAGGTATGGAGACAG+TGG - chr6_3:69693560-69693579 Msa0957680:intron 50.0%
TCAGGTATGGAGACAGTGGA+TGG - chr6_3:69693564-69693583 Msa0957680:intron 50.0%
ACGATCGAAGGTCTAGCATC+CGG + chr6_3:69693698-69693717 None:intergenic 50.0%
GAAGCAACTGTCACGATCGA+AGG + chr6_3:69693710-69693729 None:intergenic 50.0%
CCACCATGCAAGAAAAACGC+AGG + chr6_3:69693776-69693795 None:intergenic 50.0%
! CCTGCGTTTTTCTTGCATGG+TGG - chr6_3:69693773-69693792 Msa0957680:CDS 50.0%
! TCGGAATCTGGAGATGACGG+CGG - chr6_3:69691389-69691408 Msa0957680:CDS 55.0%
CGGAGAGGATGAAGAACGGT+CGG + chr6_3:69691429-69691448 None:intergenic 55.0%
! CTCTCTGAGAGCTCTGCAAC+TGG + chr6_3:69691457-69691476 None:intergenic 55.0%
GCAGAGCTCTCAGAGAGAGA+AGG - chr6_3:69691460-69691479 Msa0957680:CDS 55.0%
GAACCAGGATTGAACCGGTC+CGG + chr6_3:69691555-69691574 None:intergenic 55.0%
CTGGATCAATCCAACGCTCG+TGG - chr6_3:69691619-69691638 Msa0957680:intron 55.0%
!! CCCAAAGAAGCATCGGGTTC+TGG + chr6_3:69691659-69691678 None:intergenic 55.0%
! ACCCAGGCCCAAAGAAGCAT+CGG + chr6_3:69691666-69691685 None:intergenic 55.0%
! GCATGTGTCGGTGCTTGTGT+CGG + chr6_3:69692553-69692572 None:intergenic 55.0%
TCCCGGACCTCGATTCTCAA+GGG - chr6_3:69693184-69693203 Msa0957680:intron 55.0%
TCCCTTGAGAATCGAGGTCC+GGG + chr6_3:69693188-69693207 None:intergenic 55.0%
CGATCGAAGGTCTAGCATCC+GGG + chr6_3:69693697-69693716 None:intergenic 55.0%
!! GAGCTCTGCAACTGGCTCGT+CGG + chr6_3:69691449-69691468 None:intergenic 60.0%
! GAACCGGACCGGTTCAATCC+TGG - chr6_3:69691549-69691568 Msa0957680:CDS 60.0%
! TCCAACGCTCGTGGAGCACT+TGG - chr6_3:69691628-69691647 Msa0957680:intron 60.0%
TCCAAGTGCTCCACGAGCGT+TGG + chr6_3:69691632-69691651 None:intergenic 60.0%
ACCCGATGCTTCTTTGGGCC+TGG - chr6_3:69691661-69691680 Msa0957680:intron 60.0%
!! CCCAGGCCCAAAGAAGCATC+GGG + chr6_3:69691665-69691684 None:intergenic 60.0%
CCCGATGCTTCTTTGGGCCT+GGG - chr6_3:69691662-69691681 Msa0957680:intron 60.0%
GTGCAGGAAGCAAAGCCCAG+GGG + chr6_3:69691738-69691757 None:intergenic 60.0%
GGTGCAGGAAGCAAAGCCCA+GGG + chr6_3:69691739-69691758 None:intergenic 60.0%
AGGTGCAGGAAGCAAAGCCC+AGG + chr6_3:69691740-69691759 None:intergenic 60.0%
CTCCCGGACCTCGATTCTCA+AGG - chr6_3:69693183-69693202 Msa0957680:intron 60.0%
!! CTGCAACTGGCTCGTCGGAG+AGG + chr6_3:69691444-69691463 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 69691330 69693904 69691330 ID=Msa0957680;Name=Msa0957680
chr6_3 mRNA 69691330 69693904 69691330 ID=Msa0957680-mRNA-1;Parent=Msa0957680;Name=Msa0957680-mRNA-1;_AED=0.64;_eAED=0.65;_QI=0|0|0|0.5|1|1|2|0|137
chr6_3 exon 69693753 69693904 69693753 ID=Msa0957680-mRNA-1:exon:12720;Parent=Msa0957680-mRNA-1
chr6_3 exon 69691330 69691591 69691330 ID=Msa0957680-mRNA-1:exon:12719;Parent=Msa0957680-mRNA-1
chr6_3 CDS 69693753 69693904 69693753 ID=Msa0957680-mRNA-1:cds;Parent=Msa0957680-mRNA-1
chr6_3 CDS 69691330 69691591 69691330 ID=Msa0957680-mRNA-1:cds;Parent=Msa0957680-mRNA-1
Gene Sequence

>Msa0957680

ATGAAAAGGCGAGTGTTATGGTGTTTCGTTTCATCAAAAATAGTTAAGTCTCATGTTCATCGGAATCTGGAGATGACGGCGGAGAAGATGAAGTTTCCGACCGTTCTTCATCCTCTCCGACGAGCCAGTTGCAGAGCTCTCAGAGAGAGAAGGTATGAAGTCATTAAGTGCATTCAGATTGGTCTATTATGTGTTCAAAATGACCCGGATGCTAGACCTTCGATCGTGACAGTTGCTTCTTATCTTAGCAGTTATGCAGTTGAATTACCAACTCCAAAAGAACCTGCGTTTTTCTTGCATGGTGGAACTTATTCCGACGTTCTCGCACAAGAATCAAGTTCTACTCAATCAGCCAATAGTTCTGCACTATTCTCAAACAATCAATTTTCGGCAAGTACTTTTATTCCTCGATAG

Protein sequence

>Msa0957680

MKRRVLWCFVSSKIVKSHVHRNLEMTAEKMKFPTVLHPLRRASCRALRERRYEVIKCIQIGLLCVQNDPDARPSIVTVASYLSSYAVELPTPKEPAFFLHGGTYSDVLAQESSSTQSANSSALFSNNQFSASTFIPR*