Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0957680 | sp|Q9C5S9|CRK6_ARATH | 41.975 | 81 | 42 | 1 | 35 | 115 | 580 | 655 | 7.70e-13 | 67.4 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0957680 | A0A396HJC8 | 91.765 | 85 | 7 | 0 | 53 | 137 | 159 | 243 | 5.81e-39 | 140 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0015750 | Msa0957680 | 0.826567 | 2.527023e-54 | -8.615850e-47 |
Msa0016570 | Msa0957680 | 0.808695 | 2.729140e-50 | -8.615850e-47 |
Msa0102070 | Msa0957680 | 0.805524 | 1.280562e-49 | -8.615850e-47 |
Msa0636170 | Msa0957680 | 0.805713 | 1.169032e-49 | -8.615850e-47 |
Msa0678930 | Msa0957680 | 0.835500 | 1.618101e-56 | -8.615850e-47 |
Msa0726140 | Msa0957680 | 0.840345 | 9.195412e-58 | -8.615850e-47 |
Msa0729800 | Msa0957680 | 0.812740 | 3.642136e-51 | -8.615850e-47 |
Msa0733290 | Msa0957680 | 0.824030 | 1.006271e-53 | -8.615850e-47 |
Msa0743810 | Msa0957680 | 0.841422 | 4.796929e-58 | -8.615850e-47 |
Msa0745060 | Msa0957680 | 0.841136 | 5.707015e-58 | -8.615850e-47 |
Msa0767720 | Msa0957680 | 0.805166 | 1.521744e-49 | -8.615850e-47 |
Msa0783160 | Msa0957680 | 0.822959 | 1.792130e-53 | -8.615850e-47 |
Msa0787600 | Msa0957680 | 0.812838 | 3.465616e-51 | -8.615850e-47 |
Msa0811080 | Msa0957680 | 0.827184 | 1.800184e-54 | -8.615850e-47 |
Msa0825860 | Msa0957680 | 0.838757 | 2.379294e-57 | -8.615850e-47 |
Msa0833290 | Msa0957680 | 0.804037 | 2.618473e-49 | -8.615850e-47 |
Msa0142220 | Msa0957680 | 0.820311 | 7.334227e-53 | -8.615850e-47 |
Msa0145750 | Msa0957680 | 0.802120 | 6.523040e-49 | -8.615850e-47 |
Msa0153910 | Msa0957680 | 0.815849 | 7.487611e-52 | -8.615850e-47 |
Msa0227480 | Msa0957680 | 0.804045 | 2.608595e-49 | -8.615850e-47 |
Msa0365500 | Msa0957680 | 0.805221 | 1.482545e-49 | -8.615850e-47 |
Msa0384800 | Msa0957680 | 0.803172 | 3.956816e-49 | -8.615850e-47 |
Msa0406120 | Msa0957680 | 0.809495 | 1.839622e-50 | -8.615850e-47 |
Msa0414410 | Msa0957680 | 0.805427 | 1.342034e-49 | -8.615850e-47 |
Msa0414420 | Msa0957680 | 0.837601 | 4.721021e-57 | -8.615850e-47 |
Msa0438620 | Msa0957680 | 0.801838 | 7.452788e-49 | -8.615850e-47 |
Msa0450000 | Msa0957680 | 0.802824 | 4.670434e-49 | -8.615850e-47 |
Msa0452900 | Msa0957680 | 0.846364 | 2.275168e-59 | -8.615850e-47 |
Msa0453120 | Msa0957680 | 0.807476 | 4.960548e-50 | -8.615850e-47 |
Msa0267000 | Msa0957680 | 0.824541 | 7.632159e-54 | -8.615850e-47 |
Msa0267010 | Msa0957680 | 0.833636 | 4.760390e-56 | -8.615850e-47 |
Msa0304170 | Msa0957680 | 0.805692 | 1.180571e-49 | -8.615850e-47 |
Msa0306460 | Msa0957680 | 0.801099 | 1.056604e-48 | -8.615850e-47 |
Msa0342240 | Msa0957680 | 0.829687 | 4.477812e-55 | -8.615850e-47 |
Msa0360510 | Msa0957680 | 0.811389 | 7.176042e-51 | -8.615850e-47 |
Msa0491590 | Msa0957680 | 0.806479 | 8.065440e-50 | -8.615850e-47 |
Msa0564890 | Msa0957680 | 0.835703 | 1.437915e-56 | -8.615850e-47 |
Msa0846330 | Msa0957680 | 0.828967 | 6.696127e-55 | -8.615850e-47 |
Msa0846350 | Msa0957680 | 0.830409 | 2.984761e-55 | -8.615850e-47 |
Msa0865320 | Msa0957680 | 0.817683 | 2.904393e-52 | -8.615850e-47 |
Msa0885290 | Msa0957680 | 0.824654 | 7.181160e-54 | -8.615850e-47 |
Msa0957680 | Msa0981370 | 0.816470 | 5.439253e-52 | -8.615850e-47 |
Msa0957680 | Msa1016280 | 0.850252 | 1.914706e-60 | -8.615850e-47 |
Msa0957680 | Msa1024240 | 0.809461 | 1.870439e-50 | -8.615850e-47 |
Msa0957680 | Msa1025360 | 0.837170 | 6.086889e-57 | -8.615850e-47 |
Msa0957680 | Msa1025370 | 0.828028 | 1.128853e-54 | -8.615850e-47 |
Msa0957680 | Msa1037200 | 0.801298 | 9.619875e-49 | -8.615850e-47 |
Msa0957680 | Msa1044830 | 0.830901 | 2.261663e-55 | -8.615850e-47 |
Msa0957680 | Msa1044840 | 0.840055 | 1.094886e-57 | -8.615850e-47 |
Msa0957680 | Msa1077460 | 0.816554 | 5.207871e-52 | -8.615850e-47 |
Msa0957680 | Msa1092990 | 0.832303 | 1.020925e-55 | -8.615850e-47 |
Msa0957680 | Msa1096580 | 0.814205 | 1.734640e-51 | -8.615850e-47 |
Msa0957680 | Msa1100980 | 0.813631 | 2.321141e-51 | -8.615850e-47 |
Msa0957680 | Msa1109440 | 0.830901 | 2.262353e-55 | -8.615850e-47 |
Msa0957680 | Msa1121200 | 0.846549 | 2.025747e-59 | -8.615850e-47 |
Msa0957680 | Msa1135740 | 0.803293 | 3.736121e-49 | -8.615850e-47 |
Msa0957680 | Msa1146110 | 0.830236 | 3.290245e-55 | -8.615850e-47 |
Msa0957680 | Msa1150370 | 0.822472 | 2.325932e-53 | -8.615850e-47 |
Msa0957680 | Msa1164120 | 0.820954 | 5.219774e-53 | -8.615850e-47 |
Msa0957680 | Msa1187940 | 0.838790 | 2.332363e-57 | -8.615850e-47 |
Msa0957680 | Msa1187950 | 0.812121 | 4.971315e-51 | -8.615850e-47 |
Msa0957680 | Msa1192640 | 0.844751 | 6.226891e-59 | -8.615850e-47 |
Msa0957680 | Msa1269670 | 0.838489 | 2.790522e-57 | -8.615850e-47 |
Msa0957680 | Msa1270230 | 0.838649 | 2.537105e-57 | -8.615850e-47 |
Msa0957680 | Msa1270240 | 0.824290 | 8.746761e-54 | -8.615850e-47 |
Msa0957680 | Msa1270270 | 0.808346 | 3.239818e-50 | -8.615850e-47 |
Msa0957680 | Msa1283330 | 0.831673 | 1.460638e-55 | -8.615850e-47 |
Msa0957680 | Msa1285930 | 0.850713 | 1.420793e-60 | -8.615850e-47 |
Msa0957680 | Msa1287800 | 0.842252 | 2.897030e-58 | -8.615850e-47 |
Msa0957680 | Msa1287810 | 0.846386 | 2.243645e-59 | -8.615850e-47 |
Msa0957680 | Msa1289430 | 0.824114 | 9.616808e-54 | -8.615850e-47 |
Msa0957680 | Msa1307890 | 0.833340 | 5.642087e-56 | -8.615850e-47 |
Msa0957680 | Msa1320300 | 0.816811 | 4.561465e-52 | -8.615850e-47 |
Msa0957680 | Msa1340590 | 0.800602 | 1.334341e-48 | -8.615850e-47 |
Msa0957680 | Msa1404000 | 0.819990 | 8.686944e-53 | -8.615850e-47 |
Msa0957680 | Msa1433120 | 0.821460 | 3.990903e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0957680 | MtrunA17_Chr6g0474961 | 91.765 | 85 | 7 | 0 | 53 | 137 | 159 | 243 | 1.12e-42 | 140 |
Msa0957680 | MtrunA17_Chr6g0474991 | 91.765 | 85 | 7 | 0 | 53 | 137 | 107 | 191 | 1.64e-42 | 139 |
Msa0957680 | MtrunA17_Chr6g0474871 | 94.118 | 85 | 5 | 0 | 53 | 137 | 809 | 893 | 8.17e-41 | 144 |
Msa0957680 | MtrunA17_Chr6g0474901 | 92.941 | 85 | 6 | 0 | 53 | 137 | 810 | 894 | 1.58e-40 | 143 |
Msa0957680 | MtrunA17_Chr6g0474811 | 92.941 | 85 | 6 | 0 | 53 | 137 | 817 | 901 | 3.45e-40 | 142 |
Msa0957680 | MtrunA17_Chr6g0474861 | 91.765 | 85 | 7 | 0 | 53 | 137 | 530 | 614 | 7.42e-40 | 140 |
Msa0957680 | MtrunA17_Chr6g0475091 | 89.286 | 84 | 9 | 0 | 53 | 136 | 825 | 908 | 3.57e-37 | 134 |
Msa0957680 | MtrunA17_Chr6g0475131 | 63.529 | 85 | 21 | 1 | 53 | 137 | 253 | 327 | 1.87e-31 | 114 |
Msa0957680 | MtrunA17_Chr6g0475181 | 60.920 | 87 | 21 | 1 | 51 | 137 | 57 | 130 | 5.43e-31 | 107 |
Msa0957680 | MtrunA17_Chr6g0475201 | 63.218 | 87 | 19 | 1 | 51 | 137 | 816 | 889 | 6.96e-30 | 113 |
Msa0957680 | MtrunA17_Chr6g0474851 | 95.918 | 49 | 2 | 0 | 53 | 101 | 172 | 220 | 1.51e-27 | 102 |
Msa0957680 | MtrunA17_Chr1g0206261 | 57.471 | 87 | 34 | 1 | 51 | 137 | 329 | 412 | 1.25e-25 | 99.8 |
Msa0957680 | MtrunA17_Chr8g0347571 | 53.488 | 86 | 40 | 0 | 52 | 137 | 812 | 897 | 4.46e-25 | 99.4 |
Msa0957680 | MtrunA17_Chr1g0206321 | 59.302 | 86 | 34 | 1 | 53 | 137 | 75 | 160 | 1.23e-23 | 89.7 |
Msa0957680 | MtrunA17_Chr6g0475111 | 50.000 | 90 | 45 | 0 | 48 | 137 | 825 | 914 | 1.30e-19 | 83.6 |
Msa0957680 | MtrunA17_Chr1g0206331 | 52.857 | 70 | 30 | 1 | 53 | 119 | 578 | 647 | 1.08e-17 | 78.2 |
Msa0957680 | MtrunA17_Chr1g0206351 | 60.000 | 55 | 22 | 0 | 53 | 107 | 596 | 650 | 1.72e-17 | 77.8 |
Msa0957680 | MtrunA17_Chr5g0393981 | 44.186 | 86 | 45 | 2 | 53 | 137 | 639 | 722 | 1.95e-16 | 74.7 |
Msa0957680 | MtrunA17_Chr1g0206421 | 47.945 | 73 | 38 | 0 | 53 | 125 | 468 | 540 | 1.71e-15 | 72.0 |
Msa0957680 | MtrunA17_Chr1g0206231 | 41.176 | 85 | 44 | 1 | 53 | 137 | 589 | 667 | 1.83e-14 | 68.9 |
Msa0957680 | MtrunA17_Chr3g0119041 | 43.548 | 62 | 35 | 0 | 53 | 114 | 583 | 644 | 6.34e-14 | 67.4 |
Msa0957680 | MtrunA17_Chr1g0206361 | 43.678 | 87 | 48 | 1 | 51 | 137 | 584 | 669 | 9.83e-14 | 67.0 |
Msa0957680 | MtrunA17_Chr1g0206221 | 42.857 | 77 | 39 | 1 | 53 | 124 | 68 | 144 | 2.00e-13 | 63.2 |
Msa0957680 | MtrunA17_Chr5g0428511 | 42.857 | 70 | 37 | 2 | 51 | 117 | 24 | 93 | 4.57e-13 | 61.2 |
Msa0957680 | MtrunA17_Chr5g0394001 | 50.588 | 85 | 42 | 0 | 53 | 137 | 573 | 657 | 5.17e-13 | 64.7 |
Msa0957680 | MtrunA17_Chr8g0354331 | 40.000 | 85 | 43 | 3 | 53 | 137 | 343 | 419 | 6.88e-13 | 64.3 |
Msa0957680 | MtrunA17_Chr5g0428551 | 40.426 | 94 | 49 | 2 | 51 | 137 | 67 | 160 | 8.67e-13 | 61.6 |
Msa0957680 | MtrunA17_Chr2g0318831 | 41.176 | 85 | 37 | 3 | 53 | 137 | 746 | 817 | 4.90e-12 | 62.0 |
Msa0957680 | MtrunA17_Chr5g0428581 | 39.474 | 76 | 42 | 1 | 51 | 122 | 284 | 359 | 5.14e-12 | 61.6 |
Msa0957680 | MtrunA17_Chr1g0154311 | 44.000 | 75 | 41 | 1 | 49 | 122 | 589 | 663 | 6.52e-12 | 61.6 |
Msa0957680 | MtrunA17_Chr1g0154331 | 40.789 | 76 | 41 | 1 | 49 | 120 | 277 | 352 | 1.18e-11 | 60.8 |
Msa0957680 | MtrunA17_Chr4g0023221 | 36.585 | 82 | 40 | 2 | 53 | 132 | 971 | 1042 | 1.27e-11 | 60.8 |
Msa0957680 | MtrunA17_Chr8g0354431 | 60.000 | 45 | 18 | 0 | 53 | 97 | 585 | 629 | 1.44e-11 | 60.8 |
Msa0957680 | MtrunA17_Chr1g0154371 | 38.356 | 73 | 42 | 2 | 53 | 122 | 598 | 670 | 1.82e-11 | 60.5 |
Msa0957680 | MtrunA17_Chr8g0354391 | 40.000 | 85 | 44 | 2 | 53 | 137 | 177 | 254 | 2.19e-11 | 59.3 |
Msa0957680 | MtrunA17_Chr1g0206551 | 43.056 | 72 | 37 | 1 | 53 | 120 | 278 | 349 | 2.54e-11 | 59.7 |
Msa0957680 | MtrunA17_Chr4g0048801 | 45.070 | 71 | 38 | 1 | 53 | 123 | 761 | 830 | 3.14e-11 | 59.7 |
Msa0957680 | MtrunA17_Chr6g0453561 | 42.353 | 85 | 42 | 3 | 53 | 137 | 110 | 187 | 5.22e-11 | 57.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0957680 | AT4G23140.1 | 41.975 | 81 | 42 | 1 | 35 | 115 | 580 | 655 | 7.83e-14 | 67.4 |
Msa0957680 | AT4G23140.2 | 41.975 | 81 | 42 | 1 | 35 | 115 | 586 | 661 | 8.07e-14 | 67.4 |
Msa0957680 | AT4G11470.1 | 38.824 | 85 | 52 | 0 | 53 | 137 | 582 | 666 | 8.44e-14 | 67.4 |
Msa0957680 | AT4G11470.2 | 38.824 | 85 | 52 | 0 | 53 | 137 | 587 | 671 | 8.61e-14 | 67.4 |
Msa0957680 | AT4G23160.1 | 37.079 | 89 | 51 | 1 | 35 | 123 | 588 | 671 | 1.73e-13 | 66.6 |
Msa0957680 | AT4G23150.1 | 35.922 | 103 | 58 | 2 | 35 | 137 | 565 | 659 | 4.20e-13 | 65.5 |
Msa0957680 | AT4G11480.1 | 36.471 | 85 | 54 | 0 | 53 | 137 | 572 | 656 | 1.36e-12 | 63.9 |
Msa0957680 | AT4G11480.3 | 36.471 | 85 | 54 | 0 | 53 | 137 | 567 | 651 | 1.39e-12 | 63.9 |
Msa0957680 | AT4G11480.4 | 36.471 | 85 | 54 | 0 | 53 | 137 | 564 | 648 | 1.40e-12 | 63.9 |
Msa0957680 | AT4G23180.1 | 41.538 | 65 | 38 | 0 | 50 | 114 | 587 | 651 | 1.96e-12 | 63.5 |
Msa0957680 | AT4G21400.8 | 40.230 | 87 | 45 | 1 | 51 | 137 | 493 | 572 | 4.26e-12 | 62.4 |
Msa0957680 | AT4G23290.1 | 38.824 | 85 | 52 | 0 | 53 | 137 | 563 | 647 | 4.87e-12 | 62.4 |
Msa0957680 | AT4G21410.1 | 41.379 | 87 | 44 | 2 | 51 | 137 | 475 | 554 | 4.90e-12 | 62.4 |
Msa0957680 | AT4G21400.7 | 40.230 | 87 | 45 | 1 | 51 | 137 | 594 | 673 | 5.04e-12 | 62.4 |
Msa0957680 | AT4G21400.1 | 40.230 | 87 | 45 | 1 | 51 | 137 | 604 | 683 | 5.20e-12 | 62.4 |
Msa0957680 | AT4G23290.2 | 53.191 | 47 | 22 | 0 | 53 | 99 | 606 | 652 | 5.52e-12 | 62.4 |
Msa0957680 | AT4G21400.2 | 40.230 | 87 | 45 | 1 | 51 | 137 | 592 | 671 | 5.55e-12 | 62.4 |
Msa0957680 | AT4G21410.3 | 41.379 | 87 | 44 | 2 | 51 | 137 | 600 | 679 | 6.75e-12 | 62.0 |
Find 20 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTCTGAGAGCTCTGCAAC+TGG | 0.355815 | 6_3:+69693758 | None:intergenic |
GTCTCATGTTCATCGGAATC+TGG | 0.397790 | 6_3:-69693835 | Msa0957680:CDS |
GAATGAAAAGGCGAGTGTTA+TGG | 0.434353 | 6_3:-69693884 | Msa0957680:CDS |
TGAGAATAGTGCAGAACTAT+TGG | 0.436071 | 6_3:+69691369 | None:intergenic |
GTCATTAAGTGCATTCAGAT+TGG | 0.443846 | 6_3:-69691562 | Msa0957680:CDS |
ACGATCGAAGGTCTAGCATC+CGG | 0.503607 | 6_3:+69691517 | None:intergenic |
GATTCGAAAAGAGAATGAAA+AGG | 0.522866 | 6_3:-69693896 | None:intergenic |
CGATCGAAGGTCTAGCATCC+GGG | 0.557087 | 6_3:+69691518 | None:intergenic |
CTGCAACTGGCTCGTCGGAG+AGG | 0.581724 | 6_3:+69693771 | None:intergenic |
TAGTTAAGTCTCATGTTCAT+CGG | 0.587472 | 6_3:-69693842 | Msa0957680:CDS |
GAGCTCTGCAACTGGCTCGT+CGG | 0.599177 | 6_3:+69693766 | None:intergenic |
GCAGAGCTCTCAGAGAGAGA+AGG | 0.599648 | 6_3:-69693752 | Msa0957680:intron |
TGATTCTTGTGCGAGAACGT+CGG | 0.608938 | 6_3:+69691408 | None:intergenic |
CGGAGAGGATGAAGAACGGT+CGG | 0.614781 | 6_3:+69693786 | None:intergenic |
GAAGCAACTGTCACGATCGA+AGG | 0.616528 | 6_3:+69691505 | None:intergenic |
TCATCGGAATCTGGAGATGA+CGG | 0.620923 | 6_3:-69693826 | Msa0957680:CDS |
TAAAATTTAATAAACTATCG+AGG | 0.651539 | 6_3:+69691316 | None:intergenic |
ATTATGTGTTCAAAATGACC+CGG | 0.665360 | 6_3:-69691536 | Msa0957680:CDS |
TCGTCGGAGAGGATGAAGAA+CGG | 0.699119 | 6_3:+69693782 | None:intergenic |
TCGGAATCTGGAGATGACGG+CGG | 0.721792 | 6_3:-69693823 | Msa0957680:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGAATTTTATGTTAAAAAAT+TGG | - | chr6_3:69691897-69691916 | Msa0957680:intron | 10.0% |
!! | ATATATATATTTATCATCAT+AGG | + | chr6_3:69693366-69693385 | None:intergenic | 10.0% |
!! | GTGAAATTAAATTTAATATT+TGG | + | chr6_3:69693616-69693635 | None:intergenic | 10.0% |
!! | AAATTAGAATGTAAAGATTT+AGG | - | chr6_3:69692420-69692439 | Msa0957680:intron | 15.0% |
!!! | TTTTGATTAAGAAAAAGAAA+AGG | + | chr6_3:69692758-69692777 | None:intergenic | 15.0% |
!! | AAGTATGATTAAATTTCATT+AGG | + | chr6_3:69692782-69692801 | None:intergenic | 15.0% |
!!! | AAAATGTTTTTGTTTTTTGT+TGG | + | chr6_3:69692911-69692930 | None:intergenic | 15.0% |
!!! | ACAAAAAACAAAAACATTTT+TGG | - | chr6_3:69692911-69692930 | Msa0957680:intron | 15.0% |
!!! | TTTTATTTTAGTTGAATTGA+AGG | + | chr6_3:69692994-69693013 | None:intergenic | 15.0% |
!! | AAATTTCTCAATTATTATCT+TGG | + | chr6_3:69693533-69693552 | None:intergenic | 15.0% |
!!! | TTTTTCTAATACTTTTACAC+TGG | - | chr6_3:69691831-69691850 | Msa0957680:intron | 20.0% |
!! | GTTAAAAAATTGGTGAAAAT+TGG | - | chr6_3:69691907-69691926 | Msa0957680:intron | 20.0% |
!! | TGTAGTTAAATAATGCAAAT+AGG | - | chr6_3:69692067-69692086 | Msa0957680:intron | 20.0% |
!!! | CTAAACCTTTAAAAATGTAT+TGG | - | chr6_3:69692155-69692174 | Msa0957680:intron | 20.0% |
!!! | ACATTCCAATACATTTTTAA+AGG | + | chr6_3:69692163-69692182 | None:intergenic | 20.0% |
!!! | ATACTTTTCTTAATAAACCT+TGG | - | chr6_3:69692710-69692729 | Msa0957680:intron | 20.0% |
!!! | TACTTTTCTTAATAAACCTT+GGG | - | chr6_3:69692711-69692730 | Msa0957680:intron | 20.0% |
!! | AAAGAAAAGGAAAATTCAAT+GGG | + | chr6_3:69692745-69692764 | None:intergenic | 20.0% |
!! | AAAAGAAAAGGAAAATTCAA+TGG | + | chr6_3:69692746-69692765 | None:intergenic | 20.0% |
!!! | AATTAGTGATTTGTAAAATG+TGG | + | chr6_3:69692808-69692827 | None:intergenic | 20.0% |
!! | ATGAGATTAAAAAAAATGTG+AGG | + | chr6_3:69692834-69692853 | None:intergenic | 20.0% |
!!! | TTGATTTTAGGTTTGAAAAT+GGG | + | chr6_3:69692888-69692907 | None:intergenic | 20.0% |
!!! | GTGATATCTTATTTTTTCTT+GGG | + | chr6_3:69693230-69693249 | None:intergenic | 20.0% |
!! | AAGAAAAAATAAGATATCAC+CGG | - | chr6_3:69693230-69693249 | Msa0957680:intron | 20.0% |
!!! | TATATTTTCTGATCGAATTT+CGG | - | chr6_3:69693426-69693445 | Msa0957680:intron | 20.0% |
!!! | TAAATTTAATTTCACGTTTC+AGG | - | chr6_3:69693621-69693640 | Msa0957680:intron | 20.0% |
!!! | ATTCTCAAACAATCAATTTT+CGG | - | chr6_3:69693859-69693878 | Msa0957680:CDS | 20.0% |
! | ATTGCTTATATAAAGGTTCT+AGG | + | chr6_3:69691528-69691547 | None:intergenic | 25.0% |
! | CTTTATATAAGCAATTGAAC+CGG | - | chr6_3:69691533-69691552 | Msa0957680:CDS | 25.0% |
!!! | TTGCTGTTTTTTTTCGTTTT+TGG | - | chr6_3:69691692-69691711 | Msa0957680:intron | 25.0% |
! | AAGAAAACATCAAGAAAACA+TGG | + | chr6_3:69691806-69691825 | None:intergenic | 25.0% |
!! | ATGTTTTCTTGATGTTTTCT+TGG | - | chr6_3:69691805-69691824 | Msa0957680:intron | 25.0% |
! | TATTGGAATGTGAGAATTAT+AGG | - | chr6_3:69692172-69692191 | Msa0957680:intron | 25.0% |
! | ATATGAGACATGAAATGAAA+TGG | + | chr6_3:69692315-69692334 | None:intergenic | 25.0% |
! | TAAAGTGCAAGAAATTAAAG+TGG | + | chr6_3:69692382-69692401 | None:intergenic | 25.0% |
! | GTATGTTTAGATGAATGATT+AGG | - | chr6_3:69692632-69692651 | Msa0957680:intron | 25.0% |
! | TGATGTTGTTCATATTTGTT+TGG | + | chr6_3:69692685-69692704 | None:intergenic | 25.0% |
! | AGATTAAAAAAAATGTGAGG+TGG | + | chr6_3:69692831-69692850 | None:intergenic | 25.0% |
!!! | GTTGATTTTAGGTTTGAAAA+TGG | + | chr6_3:69692889-69692908 | None:intergenic | 25.0% |
!!! | GTTTTTTGTTGGTTGATTTT+AGG | + | chr6_3:69692900-69692919 | None:intergenic | 25.0% |
! | AAGTGTTTATTGAACCTAAA+GGG | + | chr6_3:69693058-69693077 | None:intergenic | 25.0% |
!! | AAAGTGTTTATTGAACCTAA+AGG | + | chr6_3:69693059-69693078 | None:intergenic | 25.0% |
!!! | ATCTTATTTTTTCTTGGGAA+GGG | + | chr6_3:69693225-69693244 | None:intergenic | 25.0% |
!!! | TATCTTATTTTTTCTTGGGA+AGG | + | chr6_3:69693226-69693245 | None:intergenic | 25.0% |
!!! | GGTGATATCTTATTTTTTCT+TGG | + | chr6_3:69693231-69693250 | None:intergenic | 25.0% |
!!! | ATTGTTTTATCTTGGTTTTC+GGG | + | chr6_3:69693289-69693308 | None:intergenic | 25.0% |
!!! | CATTGTTTTATCTTGGTTTT+CGG | + | chr6_3:69693290-69693309 | None:intergenic | 25.0% |
!!! | AAGAGATCATTGTTTTATCT+TGG | + | chr6_3:69693297-69693316 | None:intergenic | 25.0% |
! | TCTTAACTCTTTGATTACTA+GGG | + | chr6_3:69693468-69693487 | None:intergenic | 25.0% |
! | TTCTTAACTCTTTGATTACT+AGG | + | chr6_3:69693469-69693488 | None:intergenic | 25.0% |
!! | GAAATTTAATTTCACGTTTC+AGG | - | chr6_3:69693546-69693565 | Msa0957680:intron | 25.0% |
!! | TCAAACACCTATAAGTATTT+TGG | - | chr6_3:69693588-69693607 | Msa0957680:intron | 25.0% |
TAGTTAAGTCTCATGTTCAT+CGG | - | chr6_3:69691370-69691389 | Msa0957680:CDS | 30.0% | |
!! | TTATATAAAGGTTCTAGGAC+CGG | + | chr6_3:69691523-69691542 | None:intergenic | 30.0% |
CGGTTCAATTGCTTATATAA+AGG | + | chr6_3:69691535-69691554 | None:intergenic | 30.0% | |
ACGAAAAAAAACAGCAAGAA+GGG | + | chr6_3:69691689-69691708 | None:intergenic | 30.0% | |
AACGAAAAAAAACAGCAAGA+AGG | + | chr6_3:69691690-69691709 | None:intergenic | 30.0% | |
GAAAACATGGAAAAATGCTT+TGG | + | chr6_3:69691793-69691812 | None:intergenic | 30.0% | |
TCAAAATCATGTTCAAACAG+TGG | + | chr6_3:69692000-69692019 | None:intergenic | 30.0% | |
TTAGAATCAAGTCTTGGAAT+GGG | + | chr6_3:69692139-69692158 | None:intergenic | 30.0% | |
! | TTTAGAATCAAGTCTTGGAA+TGG | + | chr6_3:69692140-69692159 | None:intergenic | 30.0% |
! | AAAGGTTTAGAATCAAGTCT+TGG | + | chr6_3:69692145-69692164 | None:intergenic | 30.0% |
TGTGAGAATTATAGGTCATA+TGG | - | chr6_3:69692180-69692199 | Msa0957680:intron | 30.0% | |
ATAGAAAATGAGTGCAAACA+TGG | + | chr6_3:69692233-69692252 | None:intergenic | 30.0% | |
AGAGAAACACTAGAACATAA+AGG | + | chr6_3:69692256-69692275 | None:intergenic | 30.0% | |
ATTAAAGTGGAGAAAGAGAT+GGG | + | chr6_3:69692369-69692388 | None:intergenic | 30.0% | |
AATTAAAGTGGAGAAAGAGA+TGG | + | chr6_3:69692370-69692389 | None:intergenic | 30.0% | |
!!! | CTTCCATGCTTTTAATTTCT+TGG | - | chr6_3:69692461-69692480 | Msa0957680:intron | 30.0% |
TTGCCAAGAAATTAAAAGCA+TGG | + | chr6_3:69692467-69692486 | None:intergenic | 30.0% | |
!!! | CTTTTAATTTCTTGGCAAAG+AGG | - | chr6_3:69692469-69692488 | Msa0957680:intron | 30.0% |
! | ATTGGCCTAAATACATTCTA+TGG | + | chr6_3:69692495-69692514 | None:intergenic | 30.0% |
TTTAGGCCAATGATGTAATA+AGG | - | chr6_3:69692504-69692523 | Msa0957680:intron | 30.0% | |
CATTGTCCTTATTACATCAT+TGG | + | chr6_3:69692513-69692532 | None:intergenic | 30.0% | |
CAATGATGTAATAAGGACAA+TGG | - | chr6_3:69692511-69692530 | Msa0957680:intron | 30.0% | |
! | TTCTAGCTATATACCTAAAG+TGG | + | chr6_3:69692583-69692602 | None:intergenic | 30.0% |
GCATGTTTAGATGTATGTTT+AGG | - | chr6_3:69692606-69692625 | Msa0957680:intron | 30.0% | |
GGAATTTGAAGAATAGAAAG+AGG | + | chr6_3:69692867-69692886 | None:intergenic | 30.0% | |
!! | ACATTTTTGGAAGAGAACTA+CGG | - | chr6_3:69692924-69692943 | Msa0957680:intron | 30.0% |
ATTCTAAGTGAAGAATTGGA+GGG | + | chr6_3:69693035-69693054 | None:intergenic | 30.0% | |
AATTTAAAGACGGTTCCTAT+AGG | - | chr6_3:69693112-69693131 | Msa0957680:intron | 30.0% | |
TAACGACTATAGTATCCTAT+AGG | + | chr6_3:69693130-69693149 | None:intergenic | 30.0% | |
ATAGGATACTATAGTCGTTA+TGG | - | chr6_3:69693130-69693149 | Msa0957680:intron | 30.0% | |
TAGGATACTATAGTCGTTAT+GGG | - | chr6_3:69693131-69693150 | Msa0957680:intron | 30.0% | |
!! | TAAGATATCACCGGTTTAAA+AGG | - | chr6_3:69693239-69693258 | Msa0957680:intron | 30.0% |
! | TACGTTTGAACCTTTTAAAC+CGG | + | chr6_3:69693252-69693271 | None:intergenic | 30.0% |
! | TTAATTTCACGTTTCAGGTA+TGG | - | chr6_3:69693551-69693570 | Msa0957680:intron | 30.0% |
TTTGGGTCCAAAATACTTAT+AGG | + | chr6_3:69693598-69693617 | None:intergenic | 30.0% | |
ATTATGTGTTCAAAATGACC+CGG | - | chr6_3:69693676-69693695 | Msa0957680:intron | 30.0% | |
AGAGAAGGGAAATGAACAAA+TGG | - | chr6_3:69691491-69691510 | Msa0957680:CDS | 35.0% | |
AGGGAAATGAACAAATGGAT+TGG | - | chr6_3:69691496-69691515 | Msa0957680:CDS | 35.0% | |
!! | AATGAACAAATGGATTGGAC+CGG | - | chr6_3:69691501-69691520 | Msa0957680:CDS | 35.0% |
! | GAAACAAGTTGAAATGAACC+AGG | + | chr6_3:69691570-69691589 | None:intergenic | 35.0% |
CACTCTTGACCTAAATCTAA+CGG | + | chr6_3:69691597-69691616 | None:intergenic | 35.0% | |
!! | AAAAGATTTTGACACACAGG+AGG | + | chr6_3:69691760-69691779 | None:intergenic | 35.0% |
!! | TGCAAAAGATTTTGACACAC+AGG | + | chr6_3:69691763-69691782 | None:intergenic | 35.0% |
AACAGTGGCTAAGAAGTTAT+AGG | + | chr6_3:69691985-69692004 | None:intergenic | 35.0% | |
TTAAGGCAACATGATTCACT+TGG | + | chr6_3:69692114-69692133 | None:intergenic | 35.0% | |
AAGTCTTGGAATGGGAATTA+AGG | + | chr6_3:69692131-69692150 | None:intergenic | 35.0% | |
GCAACACATGACAATATCAA+AGG | + | chr6_3:69692289-69692308 | None:intergenic | 35.0% | |
AGAGGCCATAGAATGTATTT+AGG | - | chr6_3:69692487-69692506 | Msa0957680:intron | 35.0% | |
! | TTTTTAATCTCATGCCCTTG+AGG | - | chr6_3:69692841-69692860 | Msa0957680:intron | 35.0% |
GATTCTAAGTGAAGAATTGG+AGG | + | chr6_3:69693036-69693055 | None:intergenic | 35.0% | |
AGGGATTCTAAGTGAAGAAT+TGG | + | chr6_3:69693039-69693058 | None:intergenic | 35.0% | |
TCTTCACTTAGAATCCCTTT+AGG | - | chr6_3:69693041-69693060 | Msa0957680:intron | 35.0% | |
GTCATTAAGTGCATTCAGAT+TGG | - | chr6_3:69693650-69693669 | Msa0957680:intron | 35.0% | |
! | AAGAAAAACGCAGGTTCTTT+TGG | + | chr6_3:69693767-69693786 | None:intergenic | 35.0% |
TGAGAATAGTGCAGAACTAT+TGG | + | chr6_3:69693846-69693865 | None:intergenic | 35.0% | |
AGAAGGTCTTAGAGAGAGAA+GGG | - | chr6_3:69691477-69691496 | Msa0957680:CDS | 40.0% | |
TATAAGCAATTGAACCGGAC+CGG | - | chr6_3:69691538-69691557 | Msa0957680:CDS | 40.0% | |
GAAATGAACCAGGATTGAAC+CGG | + | chr6_3:69691560-69691579 | None:intergenic | 40.0% | |
GTTTCCTTGCCGTTAGATTT+AGG | - | chr6_3:69691585-69691604 | Msa0957680:intron | 40.0% | |
TTGACCTAAATCTAACGGCA+AGG | + | chr6_3:69691592-69691611 | None:intergenic | 40.0% | |
GATTTAGGTCAAGAGTGATC+TGG | - | chr6_3:69691600-69691619 | Msa0957680:intron | 40.0% | |
TTTCTTGCTAATTACACCCC+TGG | - | chr6_3:69691719-69691738 | Msa0957680:intron | 40.0% | |
TTCTTGCTAATTACACCCCT+GGG | - | chr6_3:69691720-69691739 | Msa0957680:intron | 40.0% | |
GAATGAAATGGGAACGCTTA+TGG | + | chr6_3:69692341-69692360 | None:intergenic | 40.0% | |
GATGGGATGTGGAATGAAAT+GGG | + | chr6_3:69692352-69692371 | None:intergenic | 40.0% | |
AGATGGGATGTGGAATGAAA+TGG | + | chr6_3:69692353-69692372 | None:intergenic | 40.0% | |
!! | TCAATGGGATTTTGATCCCA+AGG | + | chr6_3:69692730-69692749 | None:intergenic | 40.0% |
AGAATAGAAAGAGGCCTCAA+GGG | + | chr6_3:69692858-69692877 | None:intergenic | 40.0% | |
AAGAATAGAAAGAGGCCTCA+AGG | + | chr6_3:69692859-69692878 | None:intergenic | 40.0% | |
!! | TTTTTGGAAGAGAACTACGG+TGG | - | chr6_3:69692927-69692946 | Msa0957680:intron | 40.0% |
! | GGTGGATTTGATCCCTTAAA+CGG | - | chr6_3:69692945-69692964 | Msa0957680:intron | 40.0% |
GTGGATTTGATCCCTTAAAC+GGG | - | chr6_3:69692946-69692965 | Msa0957680:intron | 40.0% | |
! | TGGAGGGAGAAGAATGTTTT+TGG | + | chr6_3:69693019-69693038 | None:intergenic | 40.0% |
GTCTCATGTTCATCGGAATC+TGG | - | chr6_3:69691377-69691396 | Msa0957680:CDS | 45.0% | |
TCATCGGAATCTGGAGATGA+CGG | - | chr6_3:69691386-69691405 | Msa0957680:CDS | 45.0% | |
GAGAAGGTCTTAGAGAGAGA+AGG | - | chr6_3:69691476-69691495 | Msa0957680:CDS | 45.0% | |
ACATGCACACACACCACTTT+AGG | - | chr6_3:69692567-69692586 | Msa0957680:intron | 45.0% | |
TTGCCTACGTACCCGTTTAA+GGG | + | chr6_3:69692960-69692979 | None:intergenic | 45.0% | |
GCGCGCGTAGAATTTAAAGA+CGG | - | chr6_3:69693102-69693121 | Msa0957680:intron | 45.0% | |
!! | TTTCGCTATGGGAAGGTGTT+AGG | + | chr6_3:69693159-69693178 | None:intergenic | 45.0% |
!! | GAGTTGTTTTCGCTATGGGA+AGG | + | chr6_3:69693166-69693185 | None:intergenic | 45.0% |
AGCAAATCCCTTGAGAATCG+AGG | + | chr6_3:69693194-69693213 | None:intergenic | 45.0% | |
!!! | AACGCAGGTTCTTTTGGAGT+TGG | + | chr6_3:69693761-69693780 | None:intergenic | 45.0% |
! | GAACCTGCGTTTTTCTTGCA+TGG | - | chr6_3:69693770-69693789 | Msa0957680:CDS | 45.0% |
TGATTCTTGTGCGAGAACGT+CGG | + | chr6_3:69693807-69693826 | None:intergenic | 45.0% | |
!!! | AATTTTGATAAAAAATATAT+AGG | - | chr6_3:69691855-69691874 | Msa0957680:intron | 5.0% |
!! | TGAAATTAAATTTAATATTT+GGG | + | chr6_3:69693615-69693634 | None:intergenic | 5.0% |
TCGTCGGAGAGGATGAAGAA+CGG | + | chr6_3:69691433-69691452 | None:intergenic | 50.0% | |
TCCAGAACCCGATGCTTCTT+TGG | - | chr6_3:69691655-69691674 | Msa0957680:intron | 50.0% | |
CCAGAACCCGATGCTTCTTT+GGG | - | chr6_3:69691656-69691675 | Msa0957680:intron | 50.0% | |
AAAACAGCAAGAAGGGACCC+AGG | + | chr6_3:69691682-69691701 | None:intergenic | 50.0% | |
!! | TTTTGACACACAGGAGGTGC+AGG | + | chr6_3:69691754-69691773 | None:intergenic | 50.0% |
GTGGAGAAAGAGATGGGATG+TGG | + | chr6_3:69692363-69692382 | None:intergenic | 50.0% | |
AGTGGTGTGTGTGCATGTGT+CGG | + | chr6_3:69692565-69692584 | None:intergenic | 50.0% | |
GATCCCTTAAACGGGTACGT+AGG | - | chr6_3:69692954-69692973 | Msa0957680:intron | 50.0% | |
CTTGCCTACGTACCCGTTTA+AGG | + | chr6_3:69692961-69692980 | None:intergenic | 50.0% | |
CTTAAACGGGTACGTAGGCA+AGG | - | chr6_3:69692959-69692978 | Msa0957680:intron | 50.0% | |
!! | CCGGGAGTTGTTTTCGCTAT+GGG | + | chr6_3:69693170-69693189 | None:intergenic | 50.0% |
CCCATAGCGAAAACAACTCC+CGG | - | chr6_3:69693167-69693186 | Msa0957680:intron | 50.0% | |
!! | TCCGGGAGTTGTTTTCGCTA+TGG | + | chr6_3:69693171-69693190 | None:intergenic | 50.0% |
ATCCCTTGAGAATCGAGGTC+CGG | + | chr6_3:69693189-69693208 | None:intergenic | 50.0% | |
! | CGTTTCAGGTATGGAGACAG+TGG | - | chr6_3:69693560-69693579 | Msa0957680:intron | 50.0% |
TCAGGTATGGAGACAGTGGA+TGG | - | chr6_3:69693564-69693583 | Msa0957680:intron | 50.0% | |
ACGATCGAAGGTCTAGCATC+CGG | + | chr6_3:69693698-69693717 | None:intergenic | 50.0% | |
GAAGCAACTGTCACGATCGA+AGG | + | chr6_3:69693710-69693729 | None:intergenic | 50.0% | |
CCACCATGCAAGAAAAACGC+AGG | + | chr6_3:69693776-69693795 | None:intergenic | 50.0% | |
! | CCTGCGTTTTTCTTGCATGG+TGG | - | chr6_3:69693773-69693792 | Msa0957680:CDS | 50.0% |
! | TCGGAATCTGGAGATGACGG+CGG | - | chr6_3:69691389-69691408 | Msa0957680:CDS | 55.0% |
CGGAGAGGATGAAGAACGGT+CGG | + | chr6_3:69691429-69691448 | None:intergenic | 55.0% | |
! | CTCTCTGAGAGCTCTGCAAC+TGG | + | chr6_3:69691457-69691476 | None:intergenic | 55.0% |
GCAGAGCTCTCAGAGAGAGA+AGG | - | chr6_3:69691460-69691479 | Msa0957680:CDS | 55.0% | |
GAACCAGGATTGAACCGGTC+CGG | + | chr6_3:69691555-69691574 | None:intergenic | 55.0% | |
CTGGATCAATCCAACGCTCG+TGG | - | chr6_3:69691619-69691638 | Msa0957680:intron | 55.0% | |
!! | CCCAAAGAAGCATCGGGTTC+TGG | + | chr6_3:69691659-69691678 | None:intergenic | 55.0% |
! | ACCCAGGCCCAAAGAAGCAT+CGG | + | chr6_3:69691666-69691685 | None:intergenic | 55.0% |
! | GCATGTGTCGGTGCTTGTGT+CGG | + | chr6_3:69692553-69692572 | None:intergenic | 55.0% |
TCCCGGACCTCGATTCTCAA+GGG | - | chr6_3:69693184-69693203 | Msa0957680:intron | 55.0% | |
TCCCTTGAGAATCGAGGTCC+GGG | + | chr6_3:69693188-69693207 | None:intergenic | 55.0% | |
CGATCGAAGGTCTAGCATCC+GGG | + | chr6_3:69693697-69693716 | None:intergenic | 55.0% | |
!! | GAGCTCTGCAACTGGCTCGT+CGG | + | chr6_3:69691449-69691468 | None:intergenic | 60.0% |
! | GAACCGGACCGGTTCAATCC+TGG | - | chr6_3:69691549-69691568 | Msa0957680:CDS | 60.0% |
! | TCCAACGCTCGTGGAGCACT+TGG | - | chr6_3:69691628-69691647 | Msa0957680:intron | 60.0% |
TCCAAGTGCTCCACGAGCGT+TGG | + | chr6_3:69691632-69691651 | None:intergenic | 60.0% | |
ACCCGATGCTTCTTTGGGCC+TGG | - | chr6_3:69691661-69691680 | Msa0957680:intron | 60.0% | |
!! | CCCAGGCCCAAAGAAGCATC+GGG | + | chr6_3:69691665-69691684 | None:intergenic | 60.0% |
CCCGATGCTTCTTTGGGCCT+GGG | - | chr6_3:69691662-69691681 | Msa0957680:intron | 60.0% | |
GTGCAGGAAGCAAAGCCCAG+GGG | + | chr6_3:69691738-69691757 | None:intergenic | 60.0% | |
GGTGCAGGAAGCAAAGCCCA+GGG | + | chr6_3:69691739-69691758 | None:intergenic | 60.0% | |
AGGTGCAGGAAGCAAAGCCC+AGG | + | chr6_3:69691740-69691759 | None:intergenic | 60.0% | |
CTCCCGGACCTCGATTCTCA+AGG | - | chr6_3:69693183-69693202 | Msa0957680:intron | 60.0% | |
!! | CTGCAACTGGCTCGTCGGAG+AGG | + | chr6_3:69691444-69691463 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_3 | gene | 69691330 | 69693904 | 69691330 | ID=Msa0957680;Name=Msa0957680 |
chr6_3 | mRNA | 69691330 | 69693904 | 69691330 | ID=Msa0957680-mRNA-1;Parent=Msa0957680;Name=Msa0957680-mRNA-1;_AED=0.64;_eAED=0.65;_QI=0|0|0|0.5|1|1|2|0|137 |
chr6_3 | exon | 69693753 | 69693904 | 69693753 | ID=Msa0957680-mRNA-1:exon:12720;Parent=Msa0957680-mRNA-1 |
chr6_3 | exon | 69691330 | 69691591 | 69691330 | ID=Msa0957680-mRNA-1:exon:12719;Parent=Msa0957680-mRNA-1 |
chr6_3 | CDS | 69693753 | 69693904 | 69693753 | ID=Msa0957680-mRNA-1:cds;Parent=Msa0957680-mRNA-1 |
chr6_3 | CDS | 69691330 | 69691591 | 69691330 | ID=Msa0957680-mRNA-1:cds;Parent=Msa0957680-mRNA-1 |
Gene Sequence |
Protein sequence |