Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0636070 | PNX78693.1 | 86.087 | 115 | 12 | 1 | 67 | 177 | 202 | 316 | 1.68e-36 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0636070 | A0A2K3LVJ8 | 86.087 | 115 | 12 | 1 | 67 | 177 | 202 | 316 | 8.03e-37 | 139 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003640 | Msa0636070 | 0.810427 | 1.158784e-50 | -8.615850e-47 |
| Msa0003890 | Msa0636070 | 0.802239 | 6.165182e-49 | -8.615850e-47 |
| Msa0007440 | Msa0636070 | 0.800588 | 1.343414e-48 | -8.615850e-47 |
| Msa0011960 | Msa0636070 | 0.819510 | 1.118335e-52 | -8.615850e-47 |
| Msa0026710 | Msa0636070 | 0.811011 | 8.663789e-51 | -8.615850e-47 |
| Msa0028660 | Msa0636070 | 0.808509 | 2.990301e-50 | -8.615850e-47 |
| Msa0032090 | Msa0636070 | 0.824108 | 9.648701e-54 | -8.615850e-47 |
| Msa0032430 | Msa0636070 | 0.811204 | 7.869606e-51 | -8.615850e-47 |
| Msa0032580 | Msa0636070 | 0.831382 | 1.723017e-55 | -8.615850e-47 |
| Msa0033110 | Msa0636070 | 0.854021 | 1.624114e-61 | -8.615850e-47 |
| Msa0033260 | Msa0636070 | 0.854146 | 1.494274e-61 | -8.615850e-47 |
| Msa0037540 | Msa0636070 | -0.801347 | 9.399446e-49 | -8.615850e-47 |
| Msa0040690 | Msa0636070 | 0.800671 | 1.291672e-48 | -8.615850e-47 |
| Msa0052640 | Msa0636070 | 0.807830 | 4.172196e-50 | -8.615850e-47 |
| Msa0052770 | Msa0636070 | 0.822732 | 2.023567e-53 | -8.615850e-47 |
| Msa0054480 | Msa0636070 | 0.804525 | 2.071554e-49 | -8.615850e-47 |
| Msa0058300 | Msa0636070 | 0.843392 | 1.441025e-58 | -8.615850e-47 |
| Msa0075960 | Msa0636070 | 0.818903 | 1.537488e-52 | -8.615850e-47 |
| Msa0076320 | Msa0636070 | 0.807429 | 5.076135e-50 | -8.615850e-47 |
| Msa0079380 | Msa0636070 | 0.817825 | 2.697615e-52 | -8.615850e-47 |
| Msa0083310 | Msa0636070 | 0.801705 | 7.935733e-49 | -8.615850e-47 |
| Msa0090360 | Msa0636070 | 0.808069 | 3.712585e-50 | -8.615850e-47 |
| Msa0091410 | Msa0636070 | 0.855942 | 4.495152e-62 | -8.615850e-47 |
| Msa0097780 | Msa0636070 | 0.806145 | 9.481781e-50 | -8.615850e-47 |
| Msa0113750 | Msa0636070 | 0.807183 | 5.723920e-50 | -8.615850e-47 |
| Msa0607050 | Msa0636070 | 0.812991 | 3.209054e-51 | -8.615850e-47 |
| Msa0610430 | Msa0636070 | 0.830173 | 3.409512e-55 | -8.615850e-47 |
| Msa0615490 | Msa0636070 | 0.807602 | 4.664763e-50 | -8.615850e-47 |
| Msa0615710 | Msa0636070 | 0.803759 | 2.991144e-49 | -8.615850e-47 |
| Msa0617640 | Msa0636070 | 0.816429 | 5.556704e-52 | -8.615850e-47 |
| Msa0621490 | Msa0636070 | 0.828601 | 8.208960e-55 | -8.615850e-47 |
| Msa0623790 | Msa0636070 | 0.842301 | 2.810600e-58 | -8.615850e-47 |
| Msa0625720 | Msa0636070 | 0.815041 | 1.132490e-51 | -8.615850e-47 |
| Msa0636070 | Msa0641670 | 0.825712 | 4.036765e-54 | -8.615850e-47 |
| Msa0636070 | Msa0643560 | 0.853710 | 1.996675e-61 | -8.615850e-47 |
| Msa0636070 | Msa0647500 | 0.816462 | 5.461954e-52 | -8.615850e-47 |
| Msa0636070 | Msa0649020 | 0.800520 | 1.386783e-48 | -8.615850e-47 |
| Msa0636070 | Msa0661190 | -0.816713 | 4.798884e-52 | -8.615850e-47 |
| Msa0636070 | Msa0663390 | 0.832144 | 1.118015e-55 | -8.615850e-47 |
| Msa0636070 | Msa0675410 | 0.945714 | 1.818938e-104 | -8.615850e-47 |
| Msa0636070 | Msa0688390 | 0.817015 | 4.106289e-52 | -8.615850e-47 |
| Msa0636070 | Msa0688960 | 0.935384 | 9.224618e-97 | -8.615850e-47 |
| Msa0636070 | Msa0692830 | 0.833206 | 6.091970e-56 | -8.615850e-47 |
| Msa0636070 | Msa0692950 | 0.836448 | 9.301439e-57 | -8.615850e-47 |
| Msa0636070 | Msa0698540 | 0.840499 | 8.382113e-58 | -8.615850e-47 |
| Msa0636070 | Msa0707250 | 0.809189 | 2.139559e-50 | -8.615850e-47 |
| Msa0636070 | Msa0709400 | 0.809560 | 1.781208e-50 | -8.615850e-47 |
| Msa0636070 | Msa0711780 | 0.814861 | 1.241519e-51 | -8.615850e-47 |
| Msa0636070 | Msa0716840 | 0.836819 | 7.481519e-57 | -8.615850e-47 |
| Msa0636070 | Msa0743950 | 0.806669 | 7.351641e-50 | -8.615850e-47 |
| Msa0636070 | Msa0769920 | 0.810797 | 9.639029e-51 | -8.615850e-47 |
| Msa0636070 | Msa0788850 | 0.817950 | 2.527748e-52 | -8.615850e-47 |
| Msa0636070 | Msa0794670 | 0.821395 | 4.131843e-53 | -8.615850e-47 |
| Msa0636070 | Msa0795090 | 0.803271 | 3.774932e-49 | -8.615850e-47 |
| Msa0636070 | Msa0796530 | 0.811238 | 7.736171e-51 | -8.615850e-47 |
| Msa0636070 | Msa0796700 | 0.801712 | 7.910667e-49 | -8.615850e-47 |
| Msa0636070 | Msa0808080 | 0.807399 | 5.152860e-50 | -8.615850e-47 |
| Msa0636070 | Msa0808270 | 0.820047 | 8.429247e-53 | -8.615850e-47 |
| Msa0636070 | Msa0847770 | 0.806534 | 7.852207e-50 | -8.615850e-47 |
| Msa0636070 | Msa0849030 | 0.807063 | 6.068746e-50 | -8.615850e-47 |
| Msa0636070 | Msa0864250 | 0.806704 | 7.229428e-50 | -8.615850e-47 |
| Msa0636070 | Msa0871270 | 0.824040 | 1.000864e-53 | -8.615850e-47 |
| Msa0636070 | Msa0878500 | 0.829334 | 5.457026e-55 | -8.615850e-47 |
| Msa0636070 | Msa0927260 | 0.800714 | 1.266343e-48 | -8.615850e-47 |
| Msa0636070 | Msa0938220 | 0.821128 | 4.759808e-53 | -8.615850e-47 |
| Msa0636070 | Msa0944190 | 0.838923 | 2.154622e-57 | -8.615850e-47 |
| Msa0636070 | Msa0945970 | 0.831487 | 1.623166e-55 | -8.615850e-47 |
| Msa0636070 | Msa0947660 | 0.823966 | 1.041651e-53 | -8.615850e-47 |
| Msa0636070 | Msa0969810 | 0.820321 | 7.298019e-53 | -8.615850e-47 |
| Msa0636070 | Msa0981060 | 0.819463 | 1.146113e-52 | -8.615850e-47 |
| Msa0636070 | Msa0994950 | 0.801813 | 7.543195e-49 | -8.615850e-47 |
| Msa0636070 | Msa0999970 | 0.833416 | 5.401049e-56 | -8.615850e-47 |
| Msa0636070 | Msa1003620 | 0.806750 | 7.067775e-50 | -8.615850e-47 |
| Msa0636070 | Msa1012830 | 0.835160 | 1.972950e-56 | -8.615850e-47 |
| Msa0636070 | Msa1014540 | 0.809132 | 2.201035e-50 | -8.615850e-47 |
| Msa0636070 | Msa1018980 | 0.803474 | 3.425952e-49 | -8.615850e-47 |
| Msa0636070 | Msa1030620 | 0.807529 | 4.835452e-50 | -8.615850e-47 |
| Msa0636070 | Msa1037420 | 0.850267 | 1.896089e-60 | -8.615850e-47 |
| Msa0636070 | Msa1046020 | 0.821014 | 5.056475e-53 | -8.615850e-47 |
| Msa0636070 | Msa1046060 | 0.827656 | 1.386856e-54 | -8.615850e-47 |
| Msa0636070 | Msa1046460 | 0.807567 | 4.746607e-50 | -8.615850e-47 |
| Msa0636070 | Msa1051200 | 0.827575 | 1.450766e-54 | -8.615850e-47 |
| Msa0636070 | Msa1081980 | 0.802780 | 4.768652e-49 | -8.615850e-47 |
| Msa0636070 | Msa1087710 | 0.815192 | 1.048527e-51 | -8.615850e-47 |
| Msa0636070 | Msa1091100 | 0.812459 | 4.195888e-51 | -8.615850e-47 |
| Msa0636070 | Msa1104090 | 0.806132 | 9.540112e-50 | -8.615850e-47 |
| Msa0636070 | Msa1106700 | 0.808649 | 2.791860e-50 | -8.615850e-47 |
| Msa0636070 | Msa1121440 | 0.821819 | 3.295794e-53 | -8.615850e-47 |
| Msa0636070 | Msa1123810 | 0.847506 | 1.107848e-59 | -8.615850e-47 |
| Msa0636070 | Msa1124960 | 0.810976 | 8.818575e-51 | -8.615850e-47 |
| Msa0636070 | Msa1128060 | 0.804387 | 2.213565e-49 | -8.615850e-47 |
| Msa0636070 | Msa1134090 | 0.804616 | 1.982725e-49 | -8.615850e-47 |
| Msa0636070 | Msa1137700 | 0.805436 | 1.336293e-49 | -8.615850e-47 |
| Msa0636070 | Msa1162270 | 0.820873 | 5.449727e-53 | -8.615850e-47 |
| Msa0636070 | Msa1167340 | 0.825214 | 5.296010e-54 | -8.615850e-47 |
| Msa0636070 | Msa1173140 | 0.820796 | 5.675493e-53 | -8.615850e-47 |
| Msa0636070 | Msa1181250 | 0.812434 | 4.247149e-51 | -8.615850e-47 |
| Msa0636070 | Msa1181330 | 0.802336 | 5.889423e-49 | -8.615850e-47 |
| Msa0636070 | Msa1203250 | 0.805774 | 1.135081e-49 | -8.615850e-47 |
| Msa0636070 | Msa1208880 | 0.825559 | 4.388789e-54 | -8.615850e-47 |
| Msa0636070 | Msa1210020 | 0.809136 | 2.196021e-50 | -8.615850e-47 |
| Msa0636070 | Msa1211890 | 0.811672 | 6.228627e-51 | -8.615850e-47 |
| Msa0636070 | Msa1231840 | 0.823143 | 1.623080e-53 | -8.615850e-47 |
| Msa0636070 | Msa1245930 | 0.813177 | 2.920561e-51 | -8.615850e-47 |
| Msa0636070 | Msa1253020 | 0.808269 | 3.364523e-50 | -8.615850e-47 |
| Msa0636070 | Msa1254730 | 0.801760 | 7.733069e-49 | -8.615850e-47 |
| Msa0636070 | Msa1256250 | 0.804690 | 1.913914e-49 | -8.615850e-47 |
| Msa0636070 | Msa1259060 | 0.804466 | 2.131649e-49 | -8.615850e-47 |
| Msa0636070 | Msa1275360 | 0.802893 | 4.519633e-49 | -8.615850e-47 |
| Msa0636070 | Msa1280320 | 0.802535 | 5.356859e-49 | -8.615850e-47 |
| Msa0636070 | Msa1287460 | 0.821215 | 4.546266e-53 | -8.615850e-47 |
| Msa0636070 | Msa1291890 | 0.808773 | 2.626395e-50 | -8.615850e-47 |
| Msa0636070 | Msa1294820 | 0.807705 | 4.436919e-50 | -8.615850e-47 |
| Msa0636070 | Msa1302640 | 0.806446 | 8.192946e-50 | -8.615850e-47 |
| Msa0636070 | Msa1306560 | 0.810269 | 1.253835e-50 | -8.615850e-47 |
| Msa0636070 | Msa1306860 | 0.803971 | 2.701815e-49 | -8.615850e-47 |
| Msa0636070 | Msa1340470 | 0.807863 | 4.105432e-50 | -8.615850e-47 |
| Msa0636070 | Msa1353330 | 0.813503 | 2.476789e-51 | -8.615850e-47 |
| Msa0636070 | Msa1361520 | 0.820076 | 8.300984e-53 | -8.615850e-47 |
| Msa0636070 | Msa1375380 | 0.826252 | 3.004264e-54 | -8.615850e-47 |
| Msa0636070 | Msa1385770 | 0.869358 | 3.287739e-66 | -8.615850e-47 |
| Msa0636070 | Msa1386780 | 0.814629 | 1.397445e-51 | -8.615850e-47 |
| Msa0636070 | Msa1389800 | 0.818289 | 2.118330e-52 | -8.615850e-47 |
| Msa0636070 | Msa1391410 | 0.824844 | 6.476459e-54 | -8.615850e-47 |
| Msa0636070 | Msa1393570 | 0.811609 | 6.425332e-51 | -8.615850e-47 |
| Msa0636070 | Msa1394290 | 0.810422 | 1.161789e-50 | -8.615850e-47 |
| Msa0636070 | Msa1400580 | 0.813055 | 3.105639e-51 | -8.615850e-47 |
| Msa0636070 | Msa1403340 | 0.814367 | 1.597230e-51 | -8.615850e-47 |
| Msa0636070 | Msa1409240 | 0.868331 | 7.067461e-66 | -8.615850e-47 |
| Msa0636070 | Msa1410100 | 0.801955 | 7.053106e-49 | -8.615850e-47 |
| Msa0636070 | Msa1415640 | 0.807058 | 6.083166e-50 | -8.615850e-47 |
| Msa0636070 | Msa1419800 | -0.800968 | 1.123597e-48 | -8.615850e-47 |
| Msa0636070 | Msa1420990 | 0.804919 | 1.713991e-49 | -8.615850e-47 |
| Msa0636070 | Msa1424750 | 0.803463 | 3.445282e-49 | -8.615850e-47 |
| Msa0636070 | Msa1426030 | 0.832629 | 8.476677e-56 | -8.615850e-47 |
| Msa0636070 | Msa1432420 | 0.847690 | 9.859754e-60 | -8.615850e-47 |
| Msa0636070 | Msa1433390 | 0.806547 | 7.803203e-50 | -8.615850e-47 |
| Msa0636070 | Msa1434140 | 0.869002 | 4.290598e-66 | -8.615850e-47 |
| Msa0636070 | Msa1439550 | 0.829400 | 5.258588e-55 | -8.615850e-47 |
| Msa0636070 | Msa1443850 | 0.804343 | 2.261173e-49 | -8.615850e-47 |
| Msa0636070 | Msa1454480 | 0.829358 | 5.382944e-55 | -8.615850e-47 |
| Msa0636070 | Msa1457920 | 0.814782 | 1.292908e-51 | -8.615850e-47 |
| Msa0636070 | Msa1466540 | 0.808866 | 2.509145e-50 | -8.615850e-47 |
| Msa0127050 | Msa0636070 | 0.814972 | 1.173291e-51 | -8.615850e-47 |
| Msa0129190 | Msa0636070 | -0.808461 | 3.061538e-50 | -8.615850e-47 |
| Msa0136070 | Msa0636070 | 0.841390 | 4.892309e-58 | -8.615850e-47 |
| Msa0136100 | Msa0636070 | 0.805155 | 1.530046e-49 | -8.615850e-47 |
| Msa0137840 | Msa0636070 | 0.805426 | 1.342441e-49 | -8.615850e-47 |
| Msa0138630 | Msa0636070 | 0.807829 | 4.174265e-50 | -8.615850e-47 |
| Msa0140650 | Msa0636070 | 0.804336 | 2.268877e-49 | -8.615850e-47 |
| Msa0145440 | Msa0636070 | 0.804441 | 2.156750e-49 | -8.615850e-47 |
| Msa0145730 | Msa0636070 | 0.826042 | 3.370636e-54 | -8.615850e-47 |
| Msa0150820 | Msa0636070 | 0.812172 | 4.846580e-51 | -8.615850e-47 |
| Msa0159180 | Msa0636070 | 0.809469 | 1.863040e-50 | -8.615850e-47 |
| Msa0159340 | Msa0636070 | 0.840645 | 7.677226e-58 | -8.615850e-47 |
| Msa0160550 | Msa0636070 | 0.831636 | 1.492086e-55 | -8.615850e-47 |
| Msa0165660 | Msa0636070 | 0.803991 | 2.676150e-49 | -8.615850e-47 |
| Msa0171540 | Msa0636070 | 0.813166 | 2.936954e-51 | -8.615850e-47 |
| Msa0172070 | Msa0636070 | 0.817220 | 3.692201e-52 | -8.615850e-47 |
| Msa0172970 | Msa0636070 | 0.827004 | 1.987887e-54 | -8.615850e-47 |
| Msa0184040 | Msa0636070 | 0.807611 | 4.644576e-50 | -8.615850e-47 |
| Msa0184780 | Msa0636070 | 0.808799 | 2.593442e-50 | -8.615850e-47 |
| Msa0189320 | Msa0636070 | 0.803693 | 3.086861e-49 | -8.615850e-47 |
| Msa0193120 | Msa0636070 | 0.816677 | 4.889596e-52 | -8.615850e-47 |
| Msa0211150 | Msa0636070 | 0.807188 | 5.710913e-50 | -8.615850e-47 |
| Msa0220720 | Msa0636070 | 0.810287 | 1.242569e-50 | -8.615850e-47 |
| Msa0228070 | Msa0636070 | 0.802816 | 4.688096e-49 | -8.615850e-47 |
| Msa0229380 | Msa0636070 | 0.801687 | 8.005466e-49 | -8.615850e-47 |
| Msa0369050 | Msa0636070 | 0.810767 | 9.787248e-51 | -8.615850e-47 |
| Msa0383800 | Msa0636070 | 0.835506 | 1.612449e-56 | -8.615850e-47 |
| Msa0385580 | Msa0636070 | 0.821389 | 4.144840e-53 | -8.615850e-47 |
| Msa0397540 | Msa0636070 | 0.809289 | 2.036637e-50 | -8.615850e-47 |
| Msa0402650 | Msa0636070 | 0.815443 | 9.220642e-52 | -8.615850e-47 |
| Msa0402790 | Msa0636070 | 0.807367 | 5.234099e-50 | -8.615850e-47 |
| Msa0432770 | Msa0636070 | 0.802186 | 6.323394e-49 | -8.615850e-47 |
| Msa0440750 | Msa0636070 | 0.804459 | 2.138146e-49 | -8.615850e-47 |
| Msa0442190 | Msa0636070 | 0.830387 | 3.021674e-55 | -8.615850e-47 |
| Msa0479970 | Msa0636070 | 0.800254 | 1.570727e-48 | -8.615850e-47 |
| Msa0481530 | Msa0636070 | 0.829271 | 5.652658e-55 | -8.615850e-47 |
| Msa0241390 | Msa0636070 | 0.836752 | 7.784304e-57 | -8.615850e-47 |
| Msa0242410 | Msa0636070 | 0.801519 | 8.664504e-49 | -8.615850e-47 |
| Msa0260680 | Msa0636070 | 0.831982 | 1.226023e-55 | -8.615850e-47 |
| Msa0262310 | Msa0636070 | 0.801456 | 8.925897e-49 | -8.615850e-47 |
| Msa0279220 | Msa0636070 | 0.819566 | 1.086067e-52 | -8.615850e-47 |
| Msa0279240 | Msa0636070 | 0.854128 | 1.512995e-61 | -8.615850e-47 |
| Msa0280090 | Msa0636070 | 0.827788 | 1.289473e-54 | -8.615850e-47 |
| Msa0298700 | Msa0636070 | 0.802380 | 5.767444e-49 | -8.615850e-47 |
| Msa0299870 | Msa0636070 | 0.826496 | 2.627072e-54 | -8.615850e-47 |
| Msa0309770 | Msa0636070 | 0.850419 | 1.718667e-60 | -8.615850e-47 |
| Msa0318980 | Msa0636070 | 0.857591 | 1.470326e-62 | -8.615850e-47 |
| Msa0333030 | Msa0636070 | 0.816170 | 6.349489e-52 | -8.615850e-47 |
| Msa0337240 | Msa0636070 | 0.812332 | 4.470609e-51 | -8.615850e-47 |
| Msa0340380 | Msa0636070 | 0.819239 | 1.289298e-52 | -8.615850e-47 |
| Msa0345970 | Msa0636070 | 0.801637 | 8.196460e-49 | -8.615850e-47 |
| Msa0487800 | Msa0636070 | 0.807779 | 4.279474e-50 | -8.615850e-47 |
| Msa0502880 | Msa0636070 | 0.849062 | 4.114793e-60 | -8.615850e-47 |
| Msa0504020 | Msa0636070 | 0.803773 | 2.970526e-49 | -8.615850e-47 |
| Msa0510350 | Msa0636070 | 0.834407 | 3.051482e-56 | -8.615850e-47 |
| Msa0529890 | Msa0636070 | 0.816366 | 5.740048e-52 | -8.615850e-47 |
| Msa0541360 | Msa0636070 | 0.953972 | 8.397039e-112 | -8.615850e-47 |
| Msa0541410 | Msa0636070 | 0.923759 | 1.738985e-89 | -8.615850e-47 |
| Msa0548240 | Msa0636070 | 0.812000 | 5.283657e-51 | -8.615850e-47 |
| Msa0554920 | Msa0636070 | 0.800193 | 1.616480e-48 | -8.615850e-47 |
| Msa0555450 | Msa0636070 | 0.805322 | 1.411478e-49 | -8.615850e-47 |
| Msa0556060 | Msa0636070 | 0.801147 | 1.032953e-48 | -8.615850e-47 |
| Msa0585560 | Msa0636070 | 0.822763 | 1.990448e-53 | -8.615850e-47 |
| Msa0596800 | Msa0636070 | 0.800071 | 1.711890e-48 | -8.615850e-47 |
| Msa0598720 | Msa0636070 | 0.804797 | 1.817716e-49 | -8.615850e-47 |
| Msa0598810 | Msa0636070 | 0.808739 | 2.670813e-50 | -8.615850e-47 |
| Msa0598860 | Msa0636070 | 0.804059 | 2.590577e-49 | -8.615850e-47 |
| Msa0602390 | Msa0636070 | 0.811646 | 6.308185e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0636070 | MtrunA17_Chr4g0018731 | 66.667 | 177 | 42 | 5 | 1 | 165 | 1 | 172 | 2.61e-40 | 134 |
| Msa0636070 | MtrunA17_Chr1g0168301 | 81.897 | 116 | 17 | 1 | 66 | 177 | 210 | 325 | 5.07e-19 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 43 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGAGTGTTTAAGACTAAC+AGG | 0.286414 | 4_3:+25866461 | Msa0636070:CDS |
| ATCATCAACTGACAGTGATT+CGG | 0.382705 | 4_3:+25866699 | Msa0636070:CDS |
| AAAGGAGGAGGAGGGAGCAC+AGG | 0.386258 | 4_3:+25866512 | Msa0636070:CDS |
| TCATCAACTGACAGTGATTC+GGG | 0.386672 | 4_3:+25866700 | Msa0636070:CDS |
| GATTCGGGTGATGGATATAA+TGG | 0.404972 | 4_3:+25866715 | Msa0636070:CDS |
| ACCATGGAGATGATGATTAG+AGG | 0.412561 | 4_3:+25866788 | Msa0636070:CDS |
| TGGATATAATGGTTCAAGTA+AGG | 0.433386 | 4_3:+25866726 | Msa0636070:CDS |
| CTATATTCATCACTATCATC+TGG | 0.440092 | 4_3:-25866556 | None:intergenic |
| GAGAGGTTCTTATAGAAAGA+AGG | 0.453802 | 4_3:+25866368 | Msa0636070:intron |
| TTGAGAGAGCTATTGCTAAA+GGG | 0.463888 | 4_3:+25866330 | Msa0636070:CDS |
| GCTAGTGATTCAGATGGTTC+CGG | 0.468678 | 4_3:+25866487 | Msa0636070:CDS |
| ACTGACAGTGATTCGGGTGA+TGG | 0.486358 | 4_3:+25866706 | Msa0636070:CDS |
| CTCCCTCCTCCTCCTTTCAC+CGG | 0.487250 | 4_3:-25866506 | None:intergenic |
| GTAGGAAAGAGAAGAGGAGA+AGG | 0.494224 | 4_3:+25866596 | Msa0636070:CDS |
| ACAAAGATGCTGACCGAAAG+AGG | 0.498522 | 4_3:+25866415 | Msa0636070:CDS |
| ATTCAGATGGTTCCGGTGAA+AGG | 0.502557 | 4_3:+25866494 | Msa0636070:CDS |
| GAGCTCAGAAGAGGAGGAAG+AGG | 0.513498 | 4_3:+25866271 | Msa0636070:CDS |
| ATTGAGAGAGCTATTGCTAA+AGG | 0.513599 | 4_3:+25866329 | Msa0636070:CDS |
| TCCTCTAATCATCATCTCCA+TGG | 0.523954 | 4_3:-25866789 | None:intergenic |
| GTTCCGGTGAAAGGAGGAGG+AGG | 0.525308 | 4_3:+25866503 | Msa0636070:CDS |
| ATGAATATAGACACAAGAAA+AGG | 0.532593 | 4_3:+25866569 | Msa0636070:CDS |
| GGATATAATGGTTCAAGTAA+GGG | 0.549938 | 4_3:+25866727 | Msa0636070:CDS |
| ATGGTTCCGGTGAAAGGAGG+AGG | 0.558346 | 4_3:+25866500 | Msa0636070:CDS |
| TAATGGTTCAAGTAAGGGTA+GGG | 0.560844 | 4_3:+25866732 | Msa0636070:CDS |
| TGTTGAGAGCTCAGAAGAGG+AGG | 0.561377 | 4_3:+25866265 | Msa0636070:CDS |
| GACACAAGAAAAGGAAGAGT+AGG | 0.567421 | 4_3:+25866578 | Msa0636070:CDS |
| TTCTGATTCTGAAACATCTG+AGG | 0.573778 | 4_3:+25866636 | Msa0636070:CDS |
| GGGGAAGTTAGTGAGAAGAG+AGG | 0.575217 | 4_3:+25866351 | Msa0636070:CDS |
| AGAGAGGTAGAGAAAAGAGA+AGG | 0.579127 | 4_3:+25866442 | Msa0636070:CDS |
| ATAATGGTTCAAGTAAGGGT+AGG | 0.582111 | 4_3:+25866731 | Msa0636070:CDS |
| TGAGAGAGCTATTGCTAAAG+GGG | 0.588008 | 4_3:+25866331 | Msa0636070:CDS |
| GGAAGAGTAGGAAAGAGAAG+AGG | 0.590104 | 4_3:+25866590 | Msa0636070:CDS |
| GGGAGCACAGGAGAAGCATG+AGG | 0.590249 | 4_3:+25866524 | Msa0636070:CDS |
| CAATGTTGAGAGCTCAGAAG+AGG | 0.592360 | 4_3:+25866262 | None:intergenic |
| AAGAGGAGGAGACGCCACCA+TGG | 0.594257 | 4_3:+25866772 | Msa0636070:CDS |
| CAGATGGTTCCGGTGAAAGG+AGG | 0.617536 | 4_3:+25866497 | Msa0636070:CDS |
| CATCTGAGGATTCTACTTCG+CGG | 0.617958 | 4_3:+25866650 | Msa0636070:CDS |
| AGGGAAGCTAGTGATTCAGA+TGG | 0.649064 | 4_3:+25866481 | Msa0636070:CDS |
| GGAGCACAGGAGAAGCATGA+GGG | 0.656858 | 4_3:+25866525 | Msa0636070:CDS |
| TTCCGGTGAAAGGAGGAGGA+GGG | 0.666380 | 4_3:+25866504 | Msa0636070:CDS |
| AGGAGTGTTTAAGACTAACA+GGG | 0.683554 | 4_3:+25866462 | Msa0636070:CDS |
| TCTAATCATCATCTCCATGG+TGG | 0.691101 | 4_3:-25866786 | None:intergenic |
| GAGAGAGCTATTGCTAAAGG+GGG | 0.696345 | 4_3:+25866332 | Msa0636070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCAAAAAATCAGAAAAG+AGG | + | chr4_3:25866755-25866774 | Msa0636070:CDS | 20.0% |
| ! | ATGAATATAGACACAAGAAA+AGG | + | chr4_3:25866569-25866588 | Msa0636070:CDS | 25.0% |
| CTATATTCATCACTATCATC+TGG | - | chr4_3:25866559-25866578 | None:intergenic | 30.0% | |
| TGGATATAATGGTTCAAGTA+AGG | + | chr4_3:25866726-25866745 | Msa0636070:CDS | 30.0% | |
| GGATATAATGGTTCAAGTAA+GGG | + | chr4_3:25866727-25866746 | Msa0636070:CDS | 30.0% | |
| TCAAAAAATCAGAAAAGAGG+AGG | + | chr4_3:25866758-25866777 | Msa0636070:CDS | 30.0% | |
| ATTGAGAGAGCTATTGCTAA+AGG | + | chr4_3:25866329-25866348 | Msa0636070:CDS | 35.0% | |
| TTGAGAGAGCTATTGCTAAA+GGG | + | chr4_3:25866330-25866349 | Msa0636070:CDS | 35.0% | |
| GAGAGGTTCTTATAGAAAGA+AGG | + | chr4_3:25866368-25866387 | Msa0636070:intron | 35.0% | |
| ! | TACCTCTCTTTTTCCTCTTT+CGG | - | chr4_3:25866431-25866450 | None:intergenic | 35.0% |
| !! | AAGGAGTGTTTAAGACTAAC+AGG | + | chr4_3:25866461-25866480 | Msa0636070:CDS | 35.0% |
| !! | AGGAGTGTTTAAGACTAACA+GGG | + | chr4_3:25866462-25866481 | Msa0636070:CDS | 35.0% |
| !! | TTCTGATTCTGAAACATCTG+AGG | + | chr4_3:25866636-25866655 | Msa0636070:CDS | 35.0% |
| ATCATCAACTGACAGTGATT+CGG | + | chr4_3:25866699-25866718 | Msa0636070:CDS | 35.0% | |
| ATAATGGTTCAAGTAAGGGT+AGG | + | chr4_3:25866731-25866750 | Msa0636070:CDS | 35.0% | |
| TAATGGTTCAAGTAAGGGTA+GGG | + | chr4_3:25866732-25866751 | Msa0636070:CDS | 35.0% | |
| TGAGAGAGCTATTGCTAAAG+GGG | + | chr4_3:25866331-25866350 | Msa0636070:CDS | 40.0% | |
| AGAGAGGTAGAGAAAAGAGA+AGG | + | chr4_3:25866442-25866461 | Msa0636070:CDS | 40.0% | |
| GACACAAGAAAAGGAAGAGT+AGG | + | chr4_3:25866578-25866597 | Msa0636070:CDS | 40.0% | |
| TCATCAACTGACAGTGATTC+GGG | + | chr4_3:25866700-25866719 | Msa0636070:CDS | 40.0% | |
| !! | GATTCGGGTGATGGATATAA+TGG | + | chr4_3:25866715-25866734 | Msa0636070:CDS | 40.0% |
| GAGAGAGCTATTGCTAAAGG+GGG | + | chr4_3:25866332-25866351 | Msa0636070:CDS | 45.0% | |
| ACAAAGATGCTGACCGAAAG+AGG | + | chr4_3:25866415-25866434 | Msa0636070:CDS | 45.0% | |
| GACCGAAAGAGGAAAAAGAG+AGG | + | chr4_3:25866426-25866445 | Msa0636070:CDS | 45.0% | |
| AGGGAAGCTAGTGATTCAGA+TGG | + | chr4_3:25866481-25866500 | Msa0636070:CDS | 45.0% | |
| GCTAGTGATTCAGATGGTTC+CGG | + | chr4_3:25866487-25866506 | Msa0636070:CDS | 45.0% | |
| ATTCAGATGGTTCCGGTGAA+AGG | + | chr4_3:25866494-25866513 | Msa0636070:CDS | 45.0% | |
| GGAAGAGTAGGAAAGAGAAG+AGG | + | chr4_3:25866590-25866609 | Msa0636070:CDS | 45.0% | |
| GTAGGAAAGAGAAGAGGAGA+AGG | + | chr4_3:25866596-25866615 | Msa0636070:CDS | 45.0% | |
| CATCTGAGGATTCTACTTCG+CGG | + | chr4_3:25866650-25866669 | Msa0636070:CDS | 45.0% | |
| TGTTGAGAGCTCAGAAGAGG+AGG | + | chr4_3:25866265-25866284 | Msa0636070:CDS | 50.0% | |
| GGGGAAGTTAGTGAGAAGAG+AGG | + | chr4_3:25866351-25866370 | Msa0636070:CDS | 50.0% | |
| ! | ACTGACAGTGATTCGGGTGA+TGG | + | chr4_3:25866706-25866725 | Msa0636070:CDS | 50.0% |
| GAGCTCAGAAGAGGAGGAAG+AGG | + | chr4_3:25866271-25866290 | Msa0636070:CDS | 55.0% | |
| CAGATGGTTCCGGTGAAAGG+AGG | + | chr4_3:25866497-25866516 | Msa0636070:CDS | 55.0% | |
| ATGGTTCCGGTGAAAGGAGG+AGG | + | chr4_3:25866500-25866519 | Msa0636070:CDS | 55.0% | |
| TTCCGGTGAAAGGAGGAGGA+GGG | + | chr4_3:25866504-25866523 | Msa0636070:CDS | 55.0% | |
| ! | GGAGCACAGGAGAAGCATGA+GGG | + | chr4_3:25866525-25866544 | Msa0636070:CDS | 55.0% |
| GTTCCGGTGAAAGGAGGAGG+AGG | + | chr4_3:25866503-25866522 | Msa0636070:CDS | 60.0% | |
| CTCCCTCCTCCTCCTTTCAC+CGG | - | chr4_3:25866509-25866528 | None:intergenic | 60.0% | |
| ! | AAAGGAGGAGGAGGGAGCAC+AGG | + | chr4_3:25866512-25866531 | Msa0636070:CDS | 60.0% |
| ! | GGGAGCACAGGAGAAGCATG+AGG | + | chr4_3:25866524-25866543 | Msa0636070:CDS | 60.0% |
| AAGAGGAGGAGACGCCACCA+TGG | + | chr4_3:25866772-25866791 | Msa0636070:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 25866264 | 25866807 | 25866264 | ID=Msa0636070;Name=Msa0636070 |
| chr4_3 | mRNA | 25866264 | 25866807 | 25866264 | ID=Msa0636070-mRNA-1;Parent=Msa0636070;Name=Msa0636070-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0|0|1|0|0|2|0|177 |
| chr4_3 | exon | 25866264 | 25866372 | 25866264 | ID=Msa0636070-mRNA-1:exon:6498;Parent=Msa0636070-mRNA-1 |
| chr4_3 | exon | 25866383 | 25866807 | 25866383 | ID=Msa0636070-mRNA-1:exon:6499;Parent=Msa0636070-mRNA-1 |
| chr4_3 | CDS | 25866264 | 25866372 | 25866264 | ID=Msa0636070-mRNA-1:cds;Parent=Msa0636070-mRNA-1 |
| chr4_3 | CDS | 25866383 | 25866807 | 25866383 | ID=Msa0636070-mRNA-1:cds;Parent=Msa0636070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
