AlfalfaGEDB | Msa0920610

M. sativa cultivar zhongmu-4 / Msa0920610

KEGG: K11423
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009506 GO:0009987 GO:0012505 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0030054 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00856.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0920610	XP_024641127.1	88.791	339	10	2	1	311	1	339	0.0	613

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0920610	sp\|Q945S8\|ASHH3_ARATH	57.300	363	101	9	1	309	1	363	2.09e-118	348

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0920610	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002490	Msa0920610	0.824078	9.806252e-54	-8.615850e-47
Msa0004860	Msa0920610	0.805646	1.207080e-49	-8.615850e-47
Msa0004920	Msa0920610	0.808869	2.505389e-50	-8.615850e-47
Msa0017510	Msa0920610	0.814816	1.270343e-51	-8.615850e-47
Msa0020930	Msa0920610	0.810572	1.078440e-50	-8.615850e-47
Msa0029270	Msa0920610	0.800044	1.733334e-48	-8.615850e-47
Msa0031340	Msa0920610	0.815404	9.404852e-52	-8.615850e-47
Msa0032090	Msa0920610	0.851608	7.943885e-61	-8.615850e-47
Msa0032430	Msa0920610	0.845771	3.298265e-59	-8.615850e-47
Msa0040450	Msa0920610	0.818974	1.480857e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0920610	MtrunA17_Chr6g0477001	88.791	339	10	2	1	311	1	339	0.0	613
Msa0920610	MtrunA17_Chr2g0305371	43.363	226	94	4	28	225	255	474	6.92e-53	181
Msa0920610	MtrunA17_Chr1g0201621	36.574	216	105	5	42	225	11	226	1.79e-31	122
Msa0920610	MtrunA17_Chr1g0201311	36.574	216	105	5	42	225	11	226	2.81e-31	122
Msa0920610	MtrunA17_Chr3g0125251	33.188	229	119	6	28	224	1240	1466	3.67e-27	112
Msa0920610	MtrunA17_Chr5g0403241	34.211	152	79	2	84	214	1325	1476	2.08e-16	80.1
Msa0920610	MtrunA17_Chr4g0075321	34.959	123	69	1	84	195	882	1004	2.75e-15	76.6
Msa0920610	MtrunA17_Chr8g0373821	33.103	145	88	1	84	219	359	503	7.07e-15	75.1
Msa0920610	MtrunA17_Chr5g0399801	31.618	136	71	3	86	199	891	1026	5.08e-12	66.6
Msa0920610	MtrunA17_Chr7g0255181	25.676	148	96	1	86	219	519	666	1.55e-11	65.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0920610	AT2G44150.1	57.300	363	101	9	1	309	1	363	2.13e-119	348
Msa0920610	AT3G59960.1	50.151	331	115	8	1	283	1	329	2.42e-83	254
Msa0920610	AT3G59960.3	57.915	259	78	4	1	230	1	257	1.78e-81	248
Msa0920610	AT3G59960.2	57.915	259	78	4	1	230	1	257	1.78e-81	248
Msa0920610	AT3G59960.4	57.915	259	78	4	1	230	1	257	1.78e-81	248
Msa0920610	AT4G30860.1	40.637	251	112	5	10	229	227	471	3.57e-53	181
Msa0920610	AT1G76710.2	35.556	225	113	4	33	225	7	231	4.07e-31	122
Msa0920610	AT1G76710.1	35.556	225	113	4	33	225	7	231	4.07e-31	122
Msa0920610	AT1G76710.4	35.556	225	113	4	33	225	7	231	4.38e-31	122
Msa0920610	AT1G76710.3	35.556	225	113	4	33	225	7	231	4.39e-31	122

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Find 93 sgRNAs with CRISPR-Local

Find 534 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGCTTACCAGTCTGC+AGG	0.545839	6_2:+55923256	None:intergenic
AAACATGCGAACAGAGGCTT+TGG	0.435383	6_2:-55928281	Msa0920610:CDS
AAAGGATACTGCGCTTTATA+TGG	0.211128	6_2:+55929377	None:intergenic
AAGAACAATACAGATCCTAC+AGG	0.587745	6_2:+55930304	None:intergenic
AAGGATACTGCGCTTTATAT+GGG	0.477321	6_2:+55929378	None:intergenic
AATTGAGTAAGCAATTTGAA+TGG	0.521092	6_2:+55923101	None:intergenic
AATTTCTCTTGTTAGAGTGA+AGG	0.541362	6_2:-55930464	Msa0920610:five_prime_UTR
ACAGATTTGGGATTATTAAA+TGG	0.239891	6_2:-55922910	Msa0920610:intron
ACCTACCAAGCCTAAATTAG+TGG	0.455934	6_2:-55927433	Msa0920610:CDS
ACCTGATATGCCACTAATTT+AGG	0.249497	6_2:+55927423	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTTCTCTTGTTAGAGTGA+AGG	-	chr6_2:55921503-55921522	Msa0920610:three_prime_UTR	30.0%
ATTTCTCTTGTTAGAGTGAA+GGG	-	chr6_2:55921504-55921523	Msa0920610:three_prime_UTR	30.0%
TGATACAAACTAAATCCTGT+AGG	-	chr6_2:55921648-55921667	Msa0920610:three_prime_UTR	30.0%
AGTTATGAAAATGCGGTTAT+TGG	-	chr6_2:55921760-55921779	Msa0920610:three_prime_UTR	30.0%
CAAATTGTTCTTCATGCTAT+AGG	-	chr6_2:55922089-55922108	Msa0920610:intron	30.0%
AATATACGGAACTCAATAGA+AGG	+	chr6_2:55922205-55922224	None:intergenic	30.0%
TCACTATATGTATGTGCTTA+TGG	-	chr6_2:55922359-55922378	Msa0920610:intron	30.0%
TCTGATAAACAGAGAATCAA+AGG	+	chr6_2:55922458-55922477	None:intergenic	30.0%
TTCCAGATTCGATTAAAAAC+AGG	-	chr6_2:55922553-55922572	Msa0920610:CDS	30.0%
AATCTGACCAACACTAATAA+AGG	+	chr6_2:55922611-55922630	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	55921480	55930509	55921480	ID=Msa0920610;Name=Msa0920610
chr6_2	mRNA	55921480	55930509	55921480	ID=Msa0920610-mRNA-1;Parent=Msa0920610;Name=Msa0920610-mRNA-1;_AED=0.09;_eAED=0.09;_QI=678\|0.90\|1\|1\|0.81\|0.75\|12\|445\|311
chr6_2	exon	55921480	55921895	55921480	ID=Msa0920610-mRNA-1:exon:8360;Parent=Msa0920610-mRNA-1
chr6_2	exon	55922483	55922583	55922483	ID=Msa0920610-mRNA-1:exon:8359;Parent=Msa0920610-mRNA-1
chr6_2	exon	55922883	55922928	55922883	ID=Msa0920610-mRNA-1:exon:8358;Parent=Msa0920610-mRNA-1
chr6_2	exon	55923058	55923142	55923058	ID=Msa0920610-mRNA-1:exon:8357;Parent=Msa0920610-mRNA-1
chr6_2	exon	55923268	55923295	55923268	ID=Msa0920610-mRNA-1:exon:8356;Parent=Msa0920610-mRNA-1
chr6_2	exon	55927425	55927527	55927425	ID=Msa0920610-mRNA-1:exon:8355;Parent=Msa0920610-mRNA-1
chr6_2	exon	55928144	55928315	55928144	ID=Msa0920610-mRNA-1:exon:8354;Parent=Msa0920610-mRNA-1
chr6_2	exon	55928417	55928495	55928417	ID=Msa0920610-mRNA-1:exon:8353;Parent=Msa0920610-mRNA-1
chr6_2	exon	55928759	55928858	55928759	ID=Msa0920610-mRNA-1:exon:8352;Parent=Msa0920610-mRNA-1
chr6_2	exon	55929051	55929156	55929051	ID=Msa0920610-mRNA-1:exon:8351;Parent=Msa0920610-mRNA-1
chr6_2	exon	55929386	55929512	55929386	ID=Msa0920610-mRNA-1:exon:8350;Parent=Msa0920610-mRNA-1
chr6_2	exon	55929814	55930509	55929814	ID=Msa0920610-mRNA-1:exon:8349;Parent=Msa0920610-mRNA-1
chr6_2	five_prime_UTR	55929832	55930509	55929832	ID=Msa0920610-mRNA-1:five_prime_utr;Parent=Msa0920610-mRNA-1
chr6_2	CDS	55929814	55929831	55929814	ID=Msa0920610-mRNA-1:cds;Parent=Msa0920610-mRNA-1
chr6_2	CDS	55929386	55929512	55929386	ID=Msa0920610-mRNA-1:cds;Parent=Msa0920610-mRNA-1
chr6_2	CDS	55929051	55929156	55929051	ID=Msa0920610-mRNA-1:cds;Parent=Msa0920610-mRNA-1
chr6_2	CDS	55928759	55928858	55928759	ID=Msa0920610-mRNA-1:cds;Parent=Msa0920610-mRNA-1
chr6_2	CDS	55928417	55928495	55928417	ID=Msa0920610-mRNA-1:cds;Parent=Msa0920610-mRNA-1
chr6_2	CDS	55928144	55928315	55928144	ID=Msa0920610-mRNA-1:cds;Parent=Msa0920610-mRNA-1
chr6_2	CDS	55927425	55927527	55927425	ID=Msa0920610-mRNA-1:cds;Parent=Msa0920610-mRNA-1
chr6_2	CDS	55923268	55923295	55923268	ID=Msa0920610-mRNA-1:cds;Parent=Msa0920610-mRNA-1
chr6_2	CDS	55923058	55923142	55923058	ID=Msa0920610-mRNA-1:cds;Parent=Msa0920610-mRNA-1
chr6_2	CDS	55922883	55922928	55922883	ID=Msa0920610-mRNA-1:cds;Parent=Msa0920610-mRNA-1
chr6_2	CDS	55922512	55922583	55922512	ID=Msa0920610-mRNA-1:cds;Parent=Msa0920610-mRNA-1
chr6_2	three_prime_UTR	55922483	55922511	55922483	ID=Msa0920610-mRNA-1:three_prime_utr;Parent=Msa0920610-mRNA-1
chr6_2	three_prime_UTR	55921480	55921895	55921480	ID=Msa0920610-mRNA-1:three_prime_utr;Parent=Msa0920610-mRNA-1

Gene Sequence

>Msa0920610

ATGCCCATCATGAAAAAGAATTCTGAGCAGAATCGTTTTGAAGCTGTATTCACGAAGCTGATGAACAATCTTGGTGAAACTGTTGACTTTGAACTTCCAGATTCGATTAAAAACAGGACAACGCAGTACACCCATATAAAGCGCAATATATATCTCACTAAGAAGGGCAAGAGAAAGAGTGATGATGGTATATTCTGTTCTTGCGCATCTTCTGATTCTACTGCTGTATGTGGTAGAGATTGCCACTGTGGGATGCTTCTGTCTAGCTGTTCTTCAGGCTGCAAATGTGGGATCTCATGTCTCAACAAAGCTTTTCAGCACCGTCCTATTAAAAAGATGAAATTAATCAAGACTGAGAAATGTGGATCTGGAATTGTGGCAGATGAAGATATAAAGCATGGGGAGTTTGTAATTGAATATGTCGGAGAAGTTATCGATGATAAAACATGCGAACAGAGGCTTTGGAATATGAAAGATCGTGGGGAAACAAACTTCTACTTATGTGAAATCAATCGAGATATGGTGATAGATGCGACAAATAAAGGAAACAAGTCAAGATACATCAACCATAGTTGCTGCCCGAATACTGAGATGCAGAAATGGTTTGTTCAATTTGGTGCAGATCAAGATTGCCACTGTGGTGCTGTTCAGTGTAGGCGTAAGCTGGGTGCGCGACCTACCAAGCCTAAATTAGTGGCATATCAGGTTTATCAGAATGGAGGCCTGCAGACTGGTAGTTCTCGGGTTGTTGACCATTCAAATTGCTTACTCAATTGCATCGATGAAGTTATTATGATAAAACAACTTGGAAATGTGAGATTTGGGATTATTAAATGGTTCGATGAGTATTCTCGAAAACACAAGATCATGTTCGAGGATGGTTGTGTTGAAATATATGACATGTCAAAAGAAGATTGGGAACTAGTGAGATTGTGA

Protein sequence

>Msa0920610

MPIMKKNSEQNRFEAVFTKLMNNLGETVDFELPDSIKNRTTQYTHIKRNIYLTKKGKRKSDDGIFCSCASSDSTAVCGRDCHCGMLLSSCSSGCKCGISCLNKAFQHRPIKKMKLIKTEKCGSGIVADEDIKHGEFVIEYVGEVIDDKTCEQRLWNMKDRGETNFYLCEINRDMVIDATNKGNKSRYINHSCCPNTEMQKWFVQFGADQDCHCGAVQCRRKLGARPTKPKLVAYQVYQNGGLQTGSSRVVDHSNCLLNCIDEVIMIKQLGNVRFGIIKWFDEYSRKHKIMFEDGCVEIYDMSKEDWELVRL*