Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541410 | PNX78693.1 | 86.087 | 115 | 12 | 1 | 25 | 135 | 202 | 316 | 1.16e-36 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541410 | A0A2K3LVJ8 | 86.087 | 115 | 12 | 1 | 25 | 135 | 202 | 316 | 5.55e-37 | 137 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011960 | Msa0541410 | 0.804305 | 2.302442e-49 | -8.615850e-47 |
| Msa0025730 | Msa0541410 | 0.804731 | 1.876611e-49 | -8.615850e-47 |
| Msa0028660 | Msa0541410 | 0.833042 | 6.692062e-56 | -8.615850e-47 |
| Msa0029270 | Msa0541410 | 0.803525 | 3.344353e-49 | -8.615850e-47 |
| Msa0032090 | Msa0541410 | 0.816079 | 6.653305e-52 | -8.615850e-47 |
| Msa0032430 | Msa0541410 | 0.814625 | 1.400874e-51 | -8.615850e-47 |
| Msa0032580 | Msa0541410 | 0.827061 | 1.925793e-54 | -8.615850e-47 |
| Msa0033110 | Msa0541410 | 0.831045 | 2.085547e-55 | -8.615850e-47 |
| Msa0033260 | Msa0541410 | 0.831523 | 1.590455e-55 | -8.615850e-47 |
| Msa0037540 | Msa0541410 | -0.800430 | 1.446478e-48 | -8.615850e-47 |
| Msa0037570 | Msa0541410 | -0.805004 | 1.645355e-49 | -8.615850e-47 |
| Msa0040690 | Msa0541410 | 0.803991 | 2.676761e-49 | -8.615850e-47 |
| Msa0052770 | Msa0541410 | 0.808672 | 2.759873e-50 | -8.615850e-47 |
| Msa0055180 | Msa0541410 | 0.801496 | 8.759648e-49 | -8.615850e-47 |
| Msa0058300 | Msa0541410 | 0.817671 | 2.922252e-52 | -8.615850e-47 |
| Msa0076320 | Msa0541410 | 0.821785 | 3.356243e-53 | -8.615850e-47 |
| Msa0079380 | Msa0541410 | 0.804775 | 1.837011e-49 | -8.615850e-47 |
| Msa0084380 | Msa0541410 | 0.803362 | 3.615502e-49 | -8.615850e-47 |
| Msa0091410 | Msa0541410 | 0.834514 | 2.867979e-56 | -8.615850e-47 |
| Msa0127050 | Msa0541410 | 0.822587 | 2.187500e-53 | -8.615850e-47 |
| Msa0129190 | Msa0541410 | -0.809212 | 2.115280e-50 | -8.615850e-47 |
| Msa0136070 | Msa0541410 | 0.815056 | 1.124061e-51 | -8.615850e-47 |
| Msa0145440 | Msa0541410 | 0.803132 | 4.033889e-49 | -8.615850e-47 |
| Msa0145730 | Msa0541410 | 0.800964 | 1.125596e-48 | -8.615850e-47 |
| Msa0150300 | Msa0541410 | 0.810216 | 1.287262e-50 | -8.615850e-47 |
| Msa0150820 | Msa0541410 | 0.812992 | 3.207023e-51 | -8.615850e-47 |
| Msa0159340 | Msa0541410 | 0.800025 | 1.749280e-48 | -8.615850e-47 |
| Msa0160550 | Msa0541410 | 0.830280 | 3.210631e-55 | -8.615850e-47 |
| Msa0165660 | Msa0541410 | 0.800323 | 1.521221e-48 | -8.615850e-47 |
| Msa0169310 | Msa0541410 | 0.809582 | 1.761823e-50 | -8.615850e-47 |
| Msa0172070 | Msa0541410 | 0.819965 | 8.801269e-53 | -8.615850e-47 |
| Msa0172970 | Msa0541410 | 0.821447 | 4.018501e-53 | -8.615850e-47 |
| Msa0184780 | Msa0541410 | 0.829268 | 5.660467e-55 | -8.615850e-47 |
| Msa0189320 | Msa0541410 | 0.811021 | 8.623436e-51 | -8.615850e-47 |
| Msa0192510 | Msa0541410 | 0.802966 | 4.364745e-49 | -8.615850e-47 |
| Msa0193120 | Msa0541410 | 0.801128 | 1.042283e-48 | -8.615850e-47 |
| Msa0211150 | Msa0541410 | 0.802189 | 6.314224e-49 | -8.615850e-47 |
| Msa0220720 | Msa0541410 | 0.800795 | 1.218910e-48 | -8.615850e-47 |
| Msa0229380 | Msa0541410 | 0.801660 | 8.106579e-49 | -8.615850e-47 |
| Msa0366890 | Msa0541410 | 0.808467 | 3.052584e-50 | -8.615850e-47 |
| Msa0369050 | Msa0541410 | 0.801531 | 8.617953e-49 | -8.615850e-47 |
| Msa0383800 | Msa0541410 | 0.853756 | 1.935687e-61 | -8.615850e-47 |
| Msa0385580 | Msa0541410 | 0.840176 | 1.018240e-57 | -8.615850e-47 |
| Msa0402650 | Msa0541410 | 0.800462 | 1.424931e-48 | -8.615850e-47 |
| Msa0434180 | Msa0541410 | 0.811562 | 6.578848e-51 | -8.615850e-47 |
| Msa0440750 | Msa0541410 | 0.804352 | 2.251694e-49 | -8.615850e-47 |
| Msa0442190 | Msa0541410 | 0.804672 | 1.930750e-49 | -8.615850e-47 |
| Msa0479970 | Msa0541410 | 0.805556 | 1.261020e-49 | -8.615850e-47 |
| Msa0481530 | Msa0541410 | 0.817883 | 2.617153e-52 | -8.615850e-47 |
| Msa0241390 | Msa0541410 | 0.854407 | 1.256687e-61 | -8.615850e-47 |
| Msa0260680 | Msa0541410 | 0.834022 | 3.811709e-56 | -8.615850e-47 |
| Msa0262310 | Msa0541410 | 0.802608 | 5.174412e-49 | -8.615850e-47 |
| Msa0264150 | Msa0541410 | 0.804830 | 1.789240e-49 | -8.615850e-47 |
| Msa0279240 | Msa0541410 | 0.829825 | 4.143850e-55 | -8.615850e-47 |
| Msa0280090 | Msa0541410 | 0.826060 | 3.337912e-54 | -8.615850e-47 |
| Msa0299870 | Msa0541410 | 0.808174 | 3.526011e-50 | -8.615850e-47 |
| Msa0309770 | Msa0541410 | 0.843414 | 1.421977e-58 | -8.615850e-47 |
| Msa0318980 | Msa0541410 | 0.835857 | 1.314400e-56 | -8.615850e-47 |
| Msa0333030 | Msa0541410 | 0.805018 | 1.634147e-49 | -8.615850e-47 |
| Msa0337240 | Msa0541410 | 0.800595 | 1.339061e-48 | -8.615850e-47 |
| Msa0502880 | Msa0541410 | 0.835023 | 2.135877e-56 | -8.615850e-47 |
| Msa0510350 | Msa0541410 | 0.837201 | 5.978762e-57 | -8.615850e-47 |
| Msa0529890 | Msa0541410 | 0.809427 | 1.902190e-50 | -8.615850e-47 |
| Msa0541360 | Msa0541410 | 0.933543 | 1.598529e-95 | -8.615850e-47 |
| Msa0541410 | Msa0548240 | 0.825246 | 5.204951e-54 | -8.615850e-47 |
| Msa0541410 | Msa0585560 | 0.813122 | 3.002838e-51 | -8.615850e-47 |
| Msa0541410 | Msa0598720 | 0.809928 | 1.484547e-50 | -8.615850e-47 |
| Msa0541410 | Msa0598810 | 0.806593 | 7.629776e-50 | -8.615850e-47 |
| Msa0541410 | Msa0602390 | 0.815262 | 1.011641e-51 | -8.615850e-47 |
| Msa0541410 | Msa0607050 | 0.823725 | 1.186401e-53 | -8.615850e-47 |
| Msa0541410 | Msa0610430 | 0.811430 | 7.029583e-51 | -8.615850e-47 |
| Msa0541410 | Msa0617640 | 0.818376 | 2.024502e-52 | -8.615850e-47 |
| Msa0541410 | Msa0621490 | 0.835361 | 1.754421e-56 | -8.615850e-47 |
| Msa0541410 | Msa0623790 | 0.844979 | 5.405344e-59 | -8.615850e-47 |
| Msa0541410 | Msa0625720 | 0.808310 | 3.297954e-50 | -8.615850e-47 |
| Msa0541410 | Msa0636070 | 0.923759 | 1.738985e-89 | -8.615850e-47 |
| Msa0541410 | Msa0641670 | 0.815470 | 9.092946e-52 | -8.615850e-47 |
| Msa0541410 | Msa0643560 | 0.853521 | 2.261866e-61 | -8.615850e-47 |
| Msa0541410 | Msa0647500 | 0.829481 | 5.025508e-55 | -8.615850e-47 |
| Msa0541410 | Msa0649490 | 0.810679 | 1.022440e-50 | -8.615850e-47 |
| Msa0541410 | Msa0661190 | -0.825338 | 4.950164e-54 | -8.615850e-47 |
| Msa0541410 | Msa0663390 | 0.824048 | 9.968279e-54 | -8.615850e-47 |
| Msa0541410 | Msa0675410 | 0.974016 | 2.032077e-137 | -8.615850e-47 |
| Msa0541410 | Msa0688960 | 0.942421 | 7.410827e-102 | -8.615850e-47 |
| Msa0541410 | Msa0689260 | 0.802208 | 6.255055e-49 | -8.615850e-47 |
| Msa0541410 | Msa0690150 | 0.817901 | 2.592855e-52 | -8.615850e-47 |
| Msa0541410 | Msa0691900 | 0.807954 | 3.926629e-50 | -8.615850e-47 |
| Msa0541410 | Msa0692830 | 0.806047 | 9.943120e-50 | -8.615850e-47 |
| Msa0541410 | Msa0692950 | 0.815267 | 1.008932e-51 | -8.615850e-47 |
| Msa0541410 | Msa0698540 | 0.800065 | 1.716070e-48 | -8.615850e-47 |
| Msa0541410 | Msa0709400 | 0.824127 | 9.549782e-54 | -8.615850e-47 |
| Msa0541410 | Msa0711780 | 0.816062 | 6.711551e-52 | -8.615850e-47 |
| Msa0541410 | Msa0716840 | 0.825775 | 3.900907e-54 | -8.615850e-47 |
| Msa0541410 | Msa0743950 | 0.808998 | 2.350889e-50 | -8.615850e-47 |
| Msa0541410 | Msa0769920 | 0.804519 | 2.078125e-49 | -8.615850e-47 |
| Msa0541410 | Msa0788850 | 0.835153 | 1.980236e-56 | -8.615850e-47 |
| Msa0541410 | Msa0794670 | 0.816294 | 5.956559e-52 | -8.615850e-47 |
| Msa0541410 | Msa0796700 | 0.808463 | 3.058918e-50 | -8.615850e-47 |
| Msa0541410 | Msa0808080 | 0.801448 | 8.962712e-49 | -8.615850e-47 |
| Msa0541410 | Msa0808270 | 0.836964 | 6.870220e-57 | -8.615850e-47 |
| Msa0541410 | Msa0847770 | 0.818113 | 2.321639e-52 | -8.615850e-47 |
| Msa0541410 | Msa0864250 | 0.808053 | 3.741013e-50 | -8.615850e-47 |
| Msa0541410 | Msa0871270 | 0.815295 | 9.946787e-52 | -8.615850e-47 |
| Msa0541410 | Msa0878500 | 0.819925 | 8.992121e-53 | -8.615850e-47 |
| Msa0541410 | Msa0938220 | 0.813079 | 3.069274e-51 | -8.615850e-47 |
| Msa0541410 | Msa0944190 | 0.832645 | 8.399177e-56 | -8.615850e-47 |
| Msa0541410 | Msa0945970 | 0.835510 | 1.609559e-56 | -8.615850e-47 |
| Msa0541410 | Msa0947660 | 0.813193 | 2.897849e-51 | -8.615850e-47 |
| Msa0541410 | Msa0981060 | 0.823284 | 1.504944e-53 | -8.615850e-47 |
| Msa0541410 | Msa0999970 | 0.823411 | 1.405132e-53 | -8.615850e-47 |
| Msa0541410 | Msa1003620 | 0.804197 | 2.424384e-49 | -8.615850e-47 |
| Msa0541410 | Msa1012830 | 0.818488 | 1.909512e-52 | -8.615850e-47 |
| Msa0541410 | Msa1014540 | 0.806244 | 9.037209e-50 | -8.615850e-47 |
| Msa0541410 | Msa1030620 | 0.816769 | 4.660748e-52 | -8.615850e-47 |
| Msa0541410 | Msa1037420 | 0.828362 | 9.377025e-55 | -8.615850e-47 |
| Msa0541410 | Msa1046020 | 0.829853 | 4.079523e-55 | -8.615850e-47 |
| Msa0541410 | Msa1046060 | 0.835314 | 1.803413e-56 | -8.615850e-47 |
| Msa0541410 | Msa1051200 | 0.810452 | 1.144787e-50 | -8.615850e-47 |
| Msa0541410 | Msa1081980 | 0.813736 | 2.200435e-51 | -8.615850e-47 |
| Msa0541410 | Msa1087710 | 0.803263 | 3.790208e-49 | -8.615850e-47 |
| Msa0541410 | Msa1091100 | 0.820559 | 6.433710e-53 | -8.615850e-47 |
| Msa0541410 | Msa1121440 | 0.808553 | 2.926351e-50 | -8.615850e-47 |
| Msa0541410 | Msa1123810 | 0.821626 | 3.652371e-53 | -8.615850e-47 |
| Msa0541410 | Msa1124960 | 0.826629 | 2.442329e-54 | -8.615850e-47 |
| Msa0541410 | Msa1128060 | 0.816116 | 6.528546e-52 | -8.615850e-47 |
| Msa0541410 | Msa1134090 | 0.809321 | 2.004674e-50 | -8.615850e-47 |
| Msa0541410 | Msa1162270 | 0.811949 | 5.419244e-51 | -8.615850e-47 |
| Msa0541410 | Msa1167340 | 0.812526 | 4.056401e-51 | -8.615850e-47 |
| Msa0541410 | Msa1173140 | 0.809903 | 1.502919e-50 | -8.615850e-47 |
| Msa0541410 | Msa1181250 | 0.803773 | 2.971100e-49 | -8.615850e-47 |
| Msa0541410 | Msa1206670 | 0.804199 | 2.422218e-49 | -8.615850e-47 |
| Msa0541410 | Msa1210020 | 0.810315 | 1.225222e-50 | -8.615850e-47 |
| Msa0541410 | Msa1253020 | 0.821035 | 5.000628e-53 | -8.615850e-47 |
| Msa0541410 | Msa1254730 | 0.800898 | 1.161389e-48 | -8.615850e-47 |
| Msa0541410 | Msa1256250 | 0.821522 | 3.862100e-53 | -8.615850e-47 |
| Msa0541410 | Msa1287460 | 0.817315 | 3.514585e-52 | -8.615850e-47 |
| Msa0541410 | Msa1294820 | 0.804140 | 2.491844e-49 | -8.615850e-47 |
| Msa0541410 | Msa1353980 | 0.805740 | 1.153553e-49 | -8.615850e-47 |
| Msa0541410 | Msa1358250 | 0.806580 | 7.676282e-50 | -8.615850e-47 |
| Msa0541410 | Msa1361520 | 0.805667 | 1.194991e-49 | -8.615850e-47 |
| Msa0541410 | Msa1374120 | 0.812356 | 4.419082e-51 | -8.615850e-47 |
| Msa0541410 | Msa1382620 | 0.806513 | 7.930937e-50 | -8.615850e-47 |
| Msa0541410 | Msa1385770 | 0.858124 | 1.021517e-62 | -8.615850e-47 |
| Msa0541410 | Msa1386780 | 0.821180 | 4.630941e-53 | -8.615850e-47 |
| Msa0541410 | Msa1391410 | 0.828369 | 9.343751e-55 | -8.615850e-47 |
| Msa0541410 | Msa1392780 | 0.811760 | 5.957628e-51 | -8.615850e-47 |
| Msa0541410 | Msa1394290 | 0.813076 | 3.073115e-51 | -8.615850e-47 |
| Msa0541410 | Msa1403340 | 0.802895 | 4.514941e-49 | -8.615850e-47 |
| Msa0541410 | Msa1409240 | 0.857504 | 1.560955e-62 | -8.615850e-47 |
| Msa0541410 | Msa1420990 | 0.807913 | 4.006194e-50 | -8.615850e-47 |
| Msa0541410 | Msa1426030 | 0.823157 | 1.610942e-53 | -8.615850e-47 |
| Msa0541410 | Msa1432420 | 0.852569 | 4.236465e-61 | -8.615850e-47 |
| Msa0541410 | Msa1434140 | 0.855865 | 4.733922e-62 | -8.615850e-47 |
| Msa0541410 | Msa1439550 | 0.803577 | 3.261740e-49 | -8.615850e-47 |
| Msa0541410 | Msa1440950 | 0.801546 | 8.555706e-49 | -8.615850e-47 |
| Msa0541410 | Msa1452240 | 0.804896 | 1.733600e-49 | -8.615850e-47 |
| Msa0541410 | Msa1453780 | -0.810863 | 9.327574e-51 | -8.615850e-47 |
| Msa0541410 | Msa1454480 | 0.811096 | 8.305427e-51 | -8.615850e-47 |
| Msa0541410 | Msa1457920 | 0.821585 | 3.734399e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541410 | MtrunA17_Chr4g0018731 | 78.846 | 104 | 16 | 2 | 24 | 123 | 71 | 172 | 5.24e-27 | 99.0 |
| Msa0541410 | MtrunA17_Chr1g0168301 | 81.897 | 116 | 17 | 1 | 24 | 135 | 210 | 325 | 3.64e-19 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 34 sgRNAs with CRISPR-Local
Find 35 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGAGTGTTTAAGACTAAC+AGG | 0.286414 | 4_1:-25284657 | Msa0541410:CDS |
| ATCATCAACTGACAGTGATT+CGG | 0.382705 | 4_1:-25284419 | Msa0541410:CDS |
| AAAGGAGGAGGAGGGAGCAC+AGG | 0.386258 | 4_1:-25284606 | Msa0541410:CDS |
| TCATCAACTGACAGTGATTC+GGG | 0.386672 | 4_1:-25284418 | Msa0541410:CDS |
| GATTCGGGTGATGGATATAA+TGG | 0.404972 | 4_1:-25284403 | Msa0541410:CDS |
| ACCATGGAGATGATGATTAG+AGG | 0.412561 | 4_1:-25284330 | None:intergenic |
| TGGATATAATGGTTCAAGTA+AGG | 0.433386 | 4_1:-25284392 | Msa0541410:CDS |
| CTATATTCATCACTATCATC+TGG | 0.440092 | 4_1:+25284562 | None:intergenic |
| GCTAGTGATTCAGATGGTTC+CGG | 0.468678 | 4_1:-25284631 | Msa0541410:CDS |
| ACTGACAGTGATTCGGGTGA+TGG | 0.486358 | 4_1:-25284412 | Msa0541410:CDS |
| CTCCCTCCTCCTCCTTTCAC+CGG | 0.487250 | 4_1:+25284612 | None:intergenic |
| GTAGGAAAGAGAAGAGGAGA+AGG | 0.494224 | 4_1:-25284522 | Msa0541410:CDS |
| ACAAAGATGCTGACCGAAAG+AGG | 0.498522 | 4_1:-25284703 | Msa0541410:CDS |
| ATTCAGATGGTTCCGGTGAA+AGG | 0.502557 | 4_1:-25284624 | Msa0541410:CDS |
| TCCTCTAATCATCATCTCCA+TGG | 0.523954 | 4_1:+25284329 | None:intergenic |
| GTTCCGGTGAAAGGAGGAGG+AGG | 0.525308 | 4_1:-25284615 | Msa0541410:CDS |
| ATGAATATAGACACAAGAAA+AGG | 0.532593 | 4_1:-25284549 | Msa0541410:CDS |
| GGATATAATGGTTCAAGTAA+GGG | 0.549938 | 4_1:-25284391 | Msa0541410:CDS |
| ATGGTTCCGGTGAAAGGAGG+AGG | 0.558346 | 4_1:-25284618 | Msa0541410:CDS |
| TAATGGTTCAAGTAAGGGTA+GGG | 0.560844 | 4_1:-25284386 | Msa0541410:CDS |
| GACACAAGAAAAGGAAGAGT+AGG | 0.567421 | 4_1:-25284540 | Msa0541410:CDS |
| TTCTGATTCTGAAACATCTG+AGG | 0.573778 | 4_1:-25284482 | Msa0541410:CDS |
| AGAGAGGTAGAGAAAAGAGA+AGG | 0.579127 | 4_1:-25284676 | Msa0541410:CDS |
| ATAATGGTTCAAGTAAGGGT+AGG | 0.582111 | 4_1:-25284387 | Msa0541410:CDS |
| GGAAGAGTAGGAAAGAGAAG+AGG | 0.590104 | 4_1:-25284528 | Msa0541410:CDS |
| GGGAGCACAGGAGAAGCATG+AGG | 0.590249 | 4_1:-25284594 | Msa0541410:CDS |
| AAGAGGAGGAGACGCCACCA+TGG | 0.594257 | 4_1:-25284346 | Msa0541410:CDS |
| CAGATGGTTCCGGTGAAAGG+AGG | 0.617536 | 4_1:-25284621 | Msa0541410:CDS |
| CATCTGAGGATTCTACTTCG+CGG | 0.617958 | 4_1:-25284468 | Msa0541410:CDS |
| AGGGAAGCTAGTGATTCAGA+TGG | 0.649064 | 4_1:-25284637 | Msa0541410:CDS |
| GGAGCACAGGAGAAGCATGA+GGG | 0.656858 | 4_1:-25284593 | Msa0541410:CDS |
| TTCCGGTGAAAGGAGGAGGA+GGG | 0.666380 | 4_1:-25284614 | Msa0541410:CDS |
| AGGAGTGTTTAAGACTAACA+GGG | 0.683554 | 4_1:-25284656 | Msa0541410:CDS |
| TCTAATCATCATCTCCATGG+TGG | 0.691101 | 4_1:+25284332 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCAAAAAATCAGAAAAG+AGG | - | chr4_1:25284688-25284707 | Msa0541410:CDS | 20.0% |
| ! | ATGAATATAGACACAAGAAA+AGG | - | chr4_1:25284502-25284521 | Msa0541410:CDS | 25.0% |
| CTATATTCATCACTATCATC+TGG | + | chr4_1:25284492-25284511 | None:intergenic | 30.0% | |
| TGGATATAATGGTTCAAGTA+AGG | - | chr4_1:25284659-25284678 | Msa0541410:CDS | 30.0% | |
| GGATATAATGGTTCAAGTAA+GGG | - | chr4_1:25284660-25284679 | Msa0541410:CDS | 30.0% | |
| TCAAAAAATCAGAAAAGAGG+AGG | - | chr4_1:25284691-25284710 | Msa0541410:CDS | 30.0% | |
| ! | TACCTCTCTTTTTCCTCTTT+CGG | + | chr4_1:25284364-25284383 | None:intergenic | 35.0% |
| !! | AAGGAGTGTTTAAGACTAAC+AGG | - | chr4_1:25284394-25284413 | Msa0541410:CDS | 35.0% |
| !! | AGGAGTGTTTAAGACTAACA+GGG | - | chr4_1:25284395-25284414 | Msa0541410:CDS | 35.0% |
| !! | TTCTGATTCTGAAACATCTG+AGG | - | chr4_1:25284569-25284588 | Msa0541410:CDS | 35.0% |
| ATCATCAACTGACAGTGATT+CGG | - | chr4_1:25284632-25284651 | Msa0541410:CDS | 35.0% | |
| ATAATGGTTCAAGTAAGGGT+AGG | - | chr4_1:25284664-25284683 | Msa0541410:CDS | 35.0% | |
| TAATGGTTCAAGTAAGGGTA+GGG | - | chr4_1:25284665-25284684 | Msa0541410:CDS | 35.0% | |
| AGAGAGGTAGAGAAAAGAGA+AGG | - | chr4_1:25284375-25284394 | Msa0541410:CDS | 40.0% | |
| GACACAAGAAAAGGAAGAGT+AGG | - | chr4_1:25284511-25284530 | Msa0541410:CDS | 40.0% | |
| TCATCAACTGACAGTGATTC+GGG | - | chr4_1:25284633-25284652 | Msa0541410:CDS | 40.0% | |
| !! | GATTCGGGTGATGGATATAA+TGG | - | chr4_1:25284648-25284667 | Msa0541410:CDS | 40.0% |
| ACAAAGATGCTGACCGAAAG+AGG | - | chr4_1:25284348-25284367 | Msa0541410:CDS | 45.0% | |
| GACCGAAAGAGGAAAAAGAG+AGG | - | chr4_1:25284359-25284378 | Msa0541410:CDS | 45.0% | |
| AGGGAAGCTAGTGATTCAGA+TGG | - | chr4_1:25284414-25284433 | Msa0541410:CDS | 45.0% | |
| GCTAGTGATTCAGATGGTTC+CGG | - | chr4_1:25284420-25284439 | Msa0541410:CDS | 45.0% | |
| ATTCAGATGGTTCCGGTGAA+AGG | - | chr4_1:25284427-25284446 | Msa0541410:CDS | 45.0% | |
| GGAAGAGTAGGAAAGAGAAG+AGG | - | chr4_1:25284523-25284542 | Msa0541410:CDS | 45.0% | |
| GTAGGAAAGAGAAGAGGAGA+AGG | - | chr4_1:25284529-25284548 | Msa0541410:CDS | 45.0% | |
| CATCTGAGGATTCTACTTCG+CGG | - | chr4_1:25284583-25284602 | Msa0541410:CDS | 45.0% | |
| ! | ACTGACAGTGATTCGGGTGA+TGG | - | chr4_1:25284639-25284658 | Msa0541410:CDS | 50.0% |
| CAGATGGTTCCGGTGAAAGG+AGG | - | chr4_1:25284430-25284449 | Msa0541410:CDS | 55.0% | |
| ATGGTTCCGGTGAAAGGAGG+AGG | - | chr4_1:25284433-25284452 | Msa0541410:CDS | 55.0% | |
| TTCCGGTGAAAGGAGGAGGA+GGG | - | chr4_1:25284437-25284456 | Msa0541410:CDS | 55.0% | |
| ! | GGAGCACAGGAGAAGCATGA+GGG | - | chr4_1:25284458-25284477 | Msa0541410:CDS | 55.0% |
| GTTCCGGTGAAAGGAGGAGG+AGG | - | chr4_1:25284436-25284455 | Msa0541410:CDS | 60.0% | |
| CTCCCTCCTCCTCCTTTCAC+CGG | + | chr4_1:25284442-25284461 | None:intergenic | 60.0% | |
| ! | AAAGGAGGAGGAGGGAGCAC+AGG | - | chr4_1:25284445-25284464 | Msa0541410:CDS | 60.0% |
| ! | GGGAGCACAGGAGAAGCATG+AGG | - | chr4_1:25284457-25284476 | Msa0541410:CDS | 60.0% |
| AAGAGGAGGAGACGCCACCA+TGG | - | chr4_1:25284705-25284724 | Msa0541410:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 25284333 | 25284740 | 25284333 | ID=Msa0541410;Name=Msa0541410 |
| chr4_1 | mRNA | 25284333 | 25284740 | 25284333 | ID=Msa0541410-mRNA-1;Parent=Msa0541410;Name=Msa0541410-mRNA-1;_AED=0.39;_eAED=0.56;_QI=0|-1|0|1|-1|1|1|0|135 |
| chr4_1 | exon | 25284333 | 25284740 | 25284333 | ID=Msa0541410-mRNA-1:exon:6795;Parent=Msa0541410-mRNA-1 |
| chr4_1 | CDS | 25284333 | 25284740 | 25284333 | ID=Msa0541410-mRNA-1:cds;Parent=Msa0541410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
