Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1034860 | XP_003625185.1 | 100.000 | 168 | 0 | 0 | 1 | 168 | 108 | 275 | 1.04e-116 | 341 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1034860 | sp|Q9FL54|DNAJ6_ARATH | 69.461 | 167 | 47 | 2 | 1 | 163 | 116 | 282 | 3.55e-68 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1034860 | A2Q3D3 | 100.000 | 168 | 0 | 0 | 1 | 168 | 108 | 275 | 4.96e-117 | 341 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa1034860 | 0.800480 | 1.413290e-48 | -8.615850e-47 |
| Msa0017950 | Msa1034860 | 0.800260 | 1.566495e-48 | -8.615850e-47 |
| Msa0077340 | Msa1034860 | 0.844773 | 6.143479e-59 | -8.615850e-47 |
| Msa0077560 | Msa1034860 | 0.812509 | 4.090057e-51 | -8.615850e-47 |
| Msa0081390 | Msa1034860 | 0.810922 | 9.056922e-51 | -8.615850e-47 |
| Msa0081450 | Msa1034860 | 0.804682 | 1.921363e-49 | -8.615850e-47 |
| Msa0081520 | Msa1034860 | 0.817022 | 4.091462e-52 | -8.615850e-47 |
| Msa0093850 | Msa1034860 | 0.836143 | 1.112262e-56 | -8.615850e-47 |
| Msa0094780 | Msa1034860 | 0.832103 | 1.144166e-55 | -8.615850e-47 |
| Msa0106620 | Msa1034860 | 0.813679 | 2.264980e-51 | -8.615850e-47 |
| Msa0106710 | Msa1034860 | 0.802494 | 5.461933e-49 | -8.615850e-47 |
| Msa0611210 | Msa1034860 | 0.823113 | 1.649834e-53 | -8.615850e-47 |
| Msa0624900 | Msa1034860 | 0.820053 | 8.404297e-53 | -8.615850e-47 |
| Msa0651550 | Msa1034860 | 0.818475 | 1.922225e-52 | -8.615850e-47 |
| Msa0674480 | Msa1034860 | 0.824483 | 7.878620e-54 | -8.615850e-47 |
| Msa0693340 | Msa1034860 | -0.803628 | 3.184076e-49 | -8.615850e-47 |
| Msa0709440 | Msa1034860 | 0.807543 | 4.801425e-50 | -8.615850e-47 |
| Msa0795750 | Msa1034860 | 0.804670 | 1.932801e-49 | -8.615850e-47 |
| Msa0795870 | Msa1034860 | 0.829138 | 6.086915e-55 | -8.615850e-47 |
| Msa0833530 | Msa1034860 | 0.824132 | 9.526339e-54 | -8.615850e-47 |
| Msa0833650 | Msa1034860 | 0.828107 | 1.080199e-54 | -8.615850e-47 |
| Msa0125360 | Msa1034860 | 0.825441 | 4.679993e-54 | -8.615850e-47 |
| Msa0133280 | Msa1034860 | 0.809008 | 2.339094e-50 | -8.615850e-47 |
| Msa0173690 | Msa1034860 | 0.808687 | 2.739926e-50 | -8.615850e-47 |
| Msa0173890 | Msa1034860 | 0.805326 | 1.408943e-49 | -8.615850e-47 |
| Msa0192480 | Msa1034860 | 0.803672 | 3.117583e-49 | -8.615850e-47 |
| Msa0221000 | Msa1034860 | 0.823508 | 1.333650e-53 | -8.615850e-47 |
| Msa0223230 | Msa1034860 | 0.812051 | 5.148692e-51 | -8.615850e-47 |
| Msa0225860 | Msa1034860 | 0.800648 | 1.305870e-48 | -8.615850e-47 |
| Msa0237210 | Msa1034860 | 0.808379 | 3.187529e-50 | -8.615850e-47 |
| Msa0372810 | Msa1034860 | 0.804668 | 1.934530e-49 | -8.615850e-47 |
| Msa0378720 | Msa1034860 | 0.810011 | 1.424676e-50 | -8.615850e-47 |
| Msa0378970 | Msa1034860 | 0.803396 | 3.556298e-49 | -8.615850e-47 |
| Msa0408380 | Msa1034860 | 0.819712 | 1.005419e-52 | -8.615850e-47 |
| Msa0428580 | Msa1034860 | 0.801339 | 9.434375e-49 | -8.615850e-47 |
| Msa0430000 | Msa1034860 | 0.802890 | 4.527035e-49 | -8.615850e-47 |
| Msa0474730 | Msa1034860 | 0.811029 | 8.588428e-51 | -8.615850e-47 |
| Msa0481890 | Msa1034860 | 0.805734 | 1.156811e-49 | -8.615850e-47 |
| Msa1000920 | Msa1034860 | 0.809150 | 2.181592e-50 | -8.615850e-47 |
| Msa1034860 | Msa1072940 | 0.845303 | 4.417662e-59 | -8.615850e-47 |
| Msa1034860 | Msa1074900 | 0.895065 | 1.364736e-75 | -8.615850e-47 |
| Msa1034860 | Msa1089450 | 0.811877 | 5.618787e-51 | -8.615850e-47 |
| Msa1034860 | Msa1125990 | 0.803451 | 3.464350e-49 | -8.615850e-47 |
| Msa1034860 | Msa1127590 | 0.808106 | 3.646026e-50 | -8.615850e-47 |
| Msa1034860 | Msa1132840 | 0.826430 | 2.724186e-54 | -8.615850e-47 |
| Msa1034860 | Msa1145810 | 0.821622 | 3.661978e-53 | -8.615850e-47 |
| Msa1034860 | Msa1155170 | -0.800924 | 1.146843e-48 | -8.615850e-47 |
| Msa1034860 | Msa1160920 | 0.838091 | 3.533253e-57 | -8.615850e-47 |
| Msa1034860 | Msa1162230 | 0.907120 | 7.142862e-81 | -8.615850e-47 |
| Msa1034860 | Msa1171290 | 0.813192 | 2.898716e-51 | -8.615850e-47 |
| Msa1034860 | Msa1192570 | 0.801081 | 1.065497e-48 | -8.615850e-47 |
| Msa1034860 | Msa1200890 | 0.810163 | 1.321562e-50 | -8.615850e-47 |
| Msa1034860 | Msa1218450 | 0.802231 | 6.188272e-49 | -8.615850e-47 |
| Msa1034860 | Msa1225860 | -0.812018 | 5.235844e-51 | -8.615850e-47 |
| Msa1034860 | Msa1340200 | 0.830481 | 2.866694e-55 | -8.615850e-47 |
| Msa1034860 | Msa1356830 | 0.807794 | 4.246877e-50 | -8.615850e-47 |
| Msa1034860 | Msa1383530 | 0.805306 | 1.422804e-49 | -8.615850e-47 |
| Msa1034860 | Msa1389900 | 0.807427 | 5.081063e-50 | -8.615850e-47 |
| Msa1034860 | Msa1405460 | 0.832752 | 7.901785e-56 | -8.615850e-47 |
| Msa1034860 | Msa1437940 | 0.802951 | 4.396780e-49 | -8.615850e-47 |
| Msa1034860 | Msa1440310 | 0.821237 | 4.491916e-53 | -8.615850e-47 |
| Msa1034860 | Msa1440880 | 0.829567 | 4.788369e-55 | -8.615850e-47 |
| Msa1034860 | Msa1449930 | 0.806241 | 9.053115e-50 | -8.615850e-47 |
| Msa1034860 | Msa1464090 | 0.821291 | 4.365183e-53 | -8.615850e-47 |
| Msa0240900 | Msa1034860 | 0.812341 | 4.451476e-51 | -8.615850e-47 |
| Msa0274980 | Msa1034860 | 0.809122 | 2.211532e-50 | -8.615850e-47 |
| Msa0281470 | Msa1034860 | 0.833402 | 5.443560e-56 | -8.615850e-47 |
| Msa0300320 | Msa1034860 | 0.805878 | 1.079046e-49 | -8.615850e-47 |
| Msa0307270 | Msa1034860 | 0.858955 | 5.774081e-63 | -8.615850e-47 |
| Msa0315690 | Msa1034860 | 0.819634 | 1.047867e-52 | -8.615850e-47 |
| Msa0320500 | Msa1034860 | 0.812486 | 4.138788e-51 | -8.615850e-47 |
| Msa0322900 | Msa1034860 | 0.812123 | 4.967636e-51 | -8.615850e-47 |
| Msa0337700 | Msa1034860 | 0.807842 | 4.148427e-50 | -8.615850e-47 |
| Msa0341690 | Msa1034860 | 0.849608 | 2.898463e-60 | -8.615850e-47 |
| Msa0361910 | Msa1034860 | 0.809153 | 2.177571e-50 | -8.615850e-47 |
| Msa0500650 | Msa1034860 | 0.814272 | 1.676207e-51 | -8.615850e-47 |
| Msa0529030 | Msa1034860 | 0.829085 | 6.270288e-55 | -8.615850e-47 |
| Msa0534720 | Msa1034860 | 0.814472 | 1.514185e-51 | -8.615850e-47 |
| Msa0580370 | Msa1034860 | 0.826429 | 2.725840e-54 | -8.615850e-47 |
| Msa0581470 | Msa1034860 | 0.801733 | 7.833111e-49 | -8.615850e-47 |
| Msa0583360 | Msa1034860 | -0.810471 | 1.134107e-50 | -8.615850e-47 |
| Msa0921000 | Msa1034860 | 0.812561 | 3.984574e-51 | -8.615850e-47 |
| Msa0934140 | Msa1034860 | 0.802635 | 5.108919e-49 | -8.615850e-47 |
| Msa0959520 | Msa1034860 | 0.809226 | 2.100783e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1034860 | MtrunA17_Chr7g0258061 | 100.000 | 168 | 0 | 0 | 1 | 168 | 108 | 275 | 9.55e-121 | 341 |
| Msa1034860 | MtrunA17_Chr1g0173931 | 78.049 | 164 | 36 | 0 | 1 | 164 | 125 | 288 | 1.08e-83 | 248 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1034860 | AT3G12170.1 | 71.429 | 154 | 44 | 0 | 1 | 154 | 98 | 251 | 5.95e-78 | 233 |
| Msa1034860 | AT3G12170.2 | 71.429 | 154 | 44 | 0 | 1 | 154 | 134 | 287 | 2.87e-77 | 232 |
| Msa1034860 | AT5G06910.1 | 69.461 | 167 | 47 | 2 | 1 | 163 | 116 | 282 | 3.61e-69 | 211 |
Find 41 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTTGCCTTCCTCTTTAA+AGG | 0.137096 | 7_1:+70572322 | None:intergenic |
| ATACTTCCTTAGCCCATTTC+TGG | 0.179895 | 7_1:+70572368 | None:intergenic |
| TAATTCTGCAGGAGAATTAA+AGG | 0.256912 | 7_1:-70572404 | Msa1034860:intron |
| CATTATCTCTTCTGTTAATC+AGG | 0.294365 | 7_1:-70573369 | Msa1034860:five_prime_UTR |
| CAACAAAAGCCTACCAGAAA+TGG | 0.329929 | 7_1:-70572381 | Msa1034860:CDS |
| AATTCCTCTTCAGAGGGTTC+TGG | 0.332420 | 7_1:+70572101 | None:intergenic |
| ACTGACCTTTCCTCTCATTT+CGG | 0.368205 | 7_1:+70572174 | None:intergenic |
| TAAAGGACTTGTGGGTGGTT+TGG | 0.373974 | 7_1:+70572339 | None:intergenic |
| TTCCTCTTTAAAGGACTTGT+GGG | 0.398805 | 7_1:+70572331 | None:intergenic |
| CTCTTCTGTTAATCAGGATC+TGG | 0.401294 | 7_1:-70573363 | Msa1034860:five_prime_UTR |
| ACTTGACTCACACCGATTCA+AGG | 0.428801 | 7_1:-70572977 | Msa1034860:CDS |
| CTTCCTCTTTAAAGGACTTG+TGG | 0.442578 | 7_1:+70572330 | None:intergenic |
| GCGTCTCTAGTATCAAAGTA+TGG | 0.472145 | 7_1:-70572137 | Msa1034860:CDS |
| AACAAAAGCCTACCAGAAAT+GGG | 0.487122 | 7_1:-70572380 | Msa1034860:CDS |
| TTTCAAAACAATGTACAAGA+AGG | 0.494913 | 7_1:-70573312 | Msa1034860:intron |
| TAATTTCTGCGGATCTACTC+TGG | 0.500867 | 7_1:-70571907 | Msa1034860:three_prime_UTR |
| TATGTGCAATGTAGTGTGAC+TGG | 0.506719 | 7_1:-70571874 | Msa1034860:three_prime_UTR |
| CATCAAGAATGTCCTTGAAT+CGG | 0.509603 | 7_1:+70572965 | None:intergenic |
| CTCTTTAAAGGACTTGTGGG+TGG | 0.519289 | 7_1:+70572334 | None:intergenic |
| AGTACAAGGGGAATATGAAA+AGG | 0.520113 | 7_1:-70573120 | Msa1034860:intron |
| CTTGATGAGGCTATAGCTGC+TGG | 0.521762 | 7_1:-70572949 | Msa1034860:intron |
| CACCCACAAGTCCTTTAAAG+AGG | 0.526019 | 7_1:-70572333 | Msa1034860:CDS |
| AGCTTCAAATTCCTCTTCAG+AGG | 0.534350 | 7_1:+70572094 | None:intergenic |
| GGAGTTTGAAGCAAACTACC+GGG | 0.541480 | 7_1:-70573185 | Msa1034860:CDS |
| CACAAGTCCTTTAAAGAGGA+AGG | 0.544290 | 7_1:-70572329 | Msa1034860:CDS |
| GCTTCAAATTCCTCTTCAGA+GGG | 0.547917 | 7_1:+70572095 | None:intergenic |
| AGGAGTTTGAAGCAAACTAC+CGG | 0.550523 | 7_1:-70573186 | Msa1034860:CDS |
| ACATTTGATTACTACATGAA+AGG | 0.552769 | 7_1:+70571945 | None:intergenic |
| GTAATCAAATGTTAGTGTAA+TGG | 0.563971 | 7_1:-70571934 | Msa1034860:three_prime_UTR |
| TTCCTTAGCCCATTTCTGGT+AGG | 0.565926 | 7_1:+70572372 | None:intergenic |
| TCTGTTAATCAGGATCTGGC+AGG | 0.566964 | 7_1:-70573359 | Msa1034860:five_prime_UTR |
| GTAATGGTTGTTAATTTCTG+CGG | 0.570495 | 7_1:-70571918 | Msa1034860:three_prime_UTR |
| AGCCTACCAGAAATGGGCTA+AGG | 0.571998 | 7_1:-70572374 | Msa1034860:CDS |
| GGTCACTGAAGCTGATATTG+AGG | 0.586002 | 7_1:-70573206 | Msa1034860:CDS |
| TTGTGTGAAGTGTGAGAACA+TGG | 0.609468 | 7_1:-70571976 | Msa1034860:three_prime_UTR |
| TATCACAACGCCGAAATGAG+AGG | 0.612937 | 7_1:-70572184 | Msa1034860:CDS |
| TATGCCAGAACCCTCTGAAG+AGG | 0.616007 | 7_1:-70572105 | Msa1034860:CDS |
| ATTCAAGGACATTCTTGATG+AGG | 0.621008 | 7_1:-70572962 | Msa1034860:CDS |
| CAACGCCGAAATGAGAGGAA+AGG | 0.636406 | 7_1:-70572179 | Msa1034860:CDS |
| TCTCTAGTATCAAAGTATGG+TGG | 0.654748 | 7_1:-70572134 | Msa1034860:CDS |
| GAGTTTGAAGCAAACTACCG+GGG | 0.707683 | 7_1:-70573184 | Msa1034860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTAAGAGTATTAATTGT+TGG | + | chr7_1:70572665-70572684 | None:intergenic | 15.0% |
| !! | AACAATTAATACTCTTAAAT+TGG | - | chr7_1:70572664-70572683 | Msa1034860:intron | 15.0% |
| !!! | AATTTAAGAGTATTAATTGT+TGG | + | chr7_1:70572665-70572684 | None:intergenic | 15.0% |
| !! | AACAATTAATACTCTTAAAT+TGG | - | chr7_1:70572664-70572683 | Msa1034860:intron | 15.0% |
| !!! | AAGAAAGCATTATTAATTTG+TGG | - | chr7_1:70572144-70572163 | Msa1034860:CDS | 20.0% |
| !!! | CCATAGAAAAGTATTTATAA+TGG | + | chr7_1:70572773-70572792 | None:intergenic | 20.0% |
| !!! | CCATTATAAATACTTTTCTA+TGG | - | chr7_1:70572770-70572789 | Msa1034860:intron | 20.0% |
| !!! | TTAATTGATTTACTCTGTAA+TGG | - | chr7_1:70572970-70572989 | Msa1034860:CDS | 20.0% |
| !!! | AAGAAAGCATTATTAATTTG+TGG | - | chr7_1:70572144-70572163 | Msa1034860:CDS | 20.0% |
| !!! | CCATAGAAAAGTATTTATAA+TGG | + | chr7_1:70572773-70572792 | None:intergenic | 20.0% |
| !!! | CCATTATAAATACTTTTCTA+TGG | - | chr7_1:70572770-70572789 | Msa1034860:intron | 20.0% |
| !!! | TTAATTGATTTACTCTGTAA+TGG | - | chr7_1:70572970-70572989 | Msa1034860:CDS | 20.0% |
| ! | TTTCAAAACAATGTACAAGA+AGG | - | chr7_1:70571928-70571947 | Msa1034860:three_prime_UTR | 25.0% |
| ! | TTTAGTCAGATATTTGGTAT+AGG | - | chr7_1:70572348-70572367 | Msa1034860:CDS | 25.0% |
| ! | AATTAGCATATTAACTCCTT+TGG | - | chr7_1:70572486-70572505 | Msa1034860:intron | 25.0% |
| ! | CTTTCTTAGAAAAATACCAA+AGG | + | chr7_1:70572505-70572524 | None:intergenic | 25.0% |
| ! | TTAGAGAATAGATAAATGTC+CGG | - | chr7_1:70572611-70572630 | Msa1034860:intron | 25.0% |
| ! | ACATCATTATCTATGTTAAC+CGG | + | chr7_1:70572633-70572652 | None:intergenic | 25.0% |
| ! | TTTGCTTAAATACCAAAATC+TGG | - | chr7_1:70572744-70572763 | Msa1034860:intron | 25.0% |
| ! | CATTAAACAAACAATCATCA+AGG | + | chr7_1:70572810-70572829 | None:intergenic | 25.0% |
| ! | ATTTGACCTATAAAAAGCAA+TGG | + | chr7_1:70573005-70573024 | None:intergenic | 25.0% |
| !!! | TGATTGCTTTGATTTTTTTG+AGG | + | chr7_1:70573200-70573219 | None:intergenic | 25.0% |
| ! | ACATTTGATTACTACATGAA+AGG | + | chr7_1:70573298-70573317 | None:intergenic | 25.0% |
| ! | GTAATCAAATGTTAGTGTAA+TGG | - | chr7_1:70573306-70573325 | Msa1034860:intron | 25.0% |
| ! | TTTCAAAACAATGTACAAGA+AGG | - | chr7_1:70571928-70571947 | Msa1034860:three_prime_UTR | 25.0% |
| ! | TTTAGTCAGATATTTGGTAT+AGG | - | chr7_1:70572348-70572367 | Msa1034860:CDS | 25.0% |
| ! | AATTAGCATATTAACTCCTT+TGG | - | chr7_1:70572486-70572505 | Msa1034860:intron | 25.0% |
| ! | CTTTCTTAGAAAAATACCAA+AGG | + | chr7_1:70572505-70572524 | None:intergenic | 25.0% |
| ! | TTAGAGAATAGATAAATGTC+CGG | - | chr7_1:70572611-70572630 | Msa1034860:intron | 25.0% |
| ! | ACATCATTATCTATGTTAAC+CGG | + | chr7_1:70572633-70572652 | None:intergenic | 25.0% |
| ! | TTTGCTTAAATACCAAAATC+TGG | - | chr7_1:70572744-70572763 | Msa1034860:intron | 25.0% |
| ! | CATTAAACAAACAATCATCA+AGG | + | chr7_1:70572810-70572829 | None:intergenic | 25.0% |
| ! | ATTTGACCTATAAAAAGCAA+TGG | + | chr7_1:70573005-70573024 | None:intergenic | 25.0% |
| !!! | TGATTGCTTTGATTTTTTTG+AGG | + | chr7_1:70573200-70573219 | None:intergenic | 25.0% |
| ! | ACATTTGATTACTACATGAA+AGG | + | chr7_1:70573298-70573317 | None:intergenic | 25.0% |
| ! | GTAATCAAATGTTAGTGTAA+TGG | - | chr7_1:70573306-70573325 | Msa1034860:intron | 25.0% |
| CATTATCTCTTCTGTTAATC+AGG | - | chr7_1:70571871-70571890 | Msa1034860:three_prime_UTR | 30.0% | |
| !!! | GCATTAGTCATTTTTGTAAG+AGG | - | chr7_1:70572170-70572189 | Msa1034860:CDS | 30.0% |
| TATCTGACTAAAACCTTGTT+CGG | + | chr7_1:70572340-70572359 | None:intergenic | 30.0% | |
| !! | CAAGGTTTTAGTCAGATATT+TGG | - | chr7_1:70572342-70572361 | Msa1034860:CDS | 30.0% |
| CTAAAAGCAAATTAACTGCA+AGG | + | chr7_1:70572454-70572473 | None:intergenic | 30.0% | |
| !!! | CTTGCAGTTAATTTGCTTTT+AGG | - | chr7_1:70572452-70572471 | Msa1034860:intron | 30.0% |
| !! | TTTACTTGGTCTTGATGATT+TGG | + | chr7_1:70572533-70572552 | None:intergenic | 30.0% |
| !!! | CGAGTATTGTGAGTATTTTT+TGG | + | chr7_1:70572591-70572610 | None:intergenic | 30.0% |
| GGTCTATGTTTCTTATAACT+AGG | - | chr7_1:70572685-70572704 | Msa1034860:intron | 30.0% | |
| !!! | TTATAATGGACTCCAGATTT+TGG | + | chr7_1:70572759-70572778 | None:intergenic | 30.0% |
| TAATGTTCTCTTAATTCTGC+AGG | - | chr7_1:70572825-70572844 | Msa1034860:intron | 30.0% | |
| TAATTCTGCAGGAGAATTAA+AGG | - | chr7_1:70572836-70572855 | Msa1034860:intron | 30.0% | |
| TTAATAGAACAAGCAAAACC+CGG | + | chr7_1:70572954-70572973 | None:intergenic | 30.0% | |
| !!! | ACTGATCCATTGCTTTTTAT+AGG | - | chr7_1:70572996-70573015 | Msa1034860:CDS | 30.0% |
| GTAATGGTTGTTAATTTCTG+CGG | - | chr7_1:70573322-70573341 | Msa1034860:exon | 30.0% | |
| CATTATCTCTTCTGTTAATC+AGG | - | chr7_1:70571871-70571890 | Msa1034860:three_prime_UTR | 30.0% | |
| !!! | GCATTAGTCATTTTTGTAAG+AGG | - | chr7_1:70572170-70572189 | Msa1034860:CDS | 30.0% |
| TATCTGACTAAAACCTTGTT+CGG | + | chr7_1:70572340-70572359 | None:intergenic | 30.0% | |
| !! | CAAGGTTTTAGTCAGATATT+TGG | - | chr7_1:70572342-70572361 | Msa1034860:CDS | 30.0% |
| CTAAAAGCAAATTAACTGCA+AGG | + | chr7_1:70572454-70572473 | None:intergenic | 30.0% | |
| !!! | CTTGCAGTTAATTTGCTTTT+AGG | - | chr7_1:70572452-70572471 | Msa1034860:intron | 30.0% |
| !! | TTTACTTGGTCTTGATGATT+TGG | + | chr7_1:70572533-70572552 | None:intergenic | 30.0% |
| !!! | CGAGTATTGTGAGTATTTTT+TGG | + | chr7_1:70572591-70572610 | None:intergenic | 30.0% |
| GGTCTATGTTTCTTATAACT+AGG | - | chr7_1:70572685-70572704 | Msa1034860:intron | 30.0% | |
| !!! | TTATAATGGACTCCAGATTT+TGG | + | chr7_1:70572759-70572778 | None:intergenic | 30.0% |
| TAATGTTCTCTTAATTCTGC+AGG | - | chr7_1:70572825-70572844 | Msa1034860:intron | 30.0% | |
| TAATTCTGCAGGAGAATTAA+AGG | - | chr7_1:70572836-70572855 | Msa1034860:intron | 30.0% | |
| TTAATAGAACAAGCAAAACC+CGG | + | chr7_1:70572954-70572973 | None:intergenic | 30.0% | |
| !!! | ACTGATCCATTGCTTTTTAT+AGG | - | chr7_1:70572996-70573015 | Msa1034860:CDS | 30.0% |
| GTAATGGTTGTTAATTTCTG+CGG | - | chr7_1:70573322-70573341 | Msa1034860:exon | 30.0% | |
| !! | GTTGTTTTGTAATGAACCAC+AGG | - | chr7_1:70572013-70572032 | Msa1034860:exon | 35.0% |
| ! | TGAGCTGTACAAAAAGTACA+AGG | - | chr7_1:70572106-70572125 | Msa1034860:CDS | 35.0% |
| ! | GAGCTGTACAAAAAGTACAA+GGG | - | chr7_1:70572107-70572126 | Msa1034860:CDS | 35.0% |
| ! | AGCTGTACAAAAAGTACAAG+GGG | - | chr7_1:70572108-70572127 | Msa1034860:CDS | 35.0% |
| AGTACAAGGGGAATATGAAA+AGG | - | chr7_1:70572120-70572139 | Msa1034860:CDS | 35.0% | |
| CATCAAGAATGTCCTTGAAT+CGG | + | chr7_1:70572278-70572297 | None:intergenic | 35.0% | |
| ATTCAAGGACATTCTTGATG+AGG | - | chr7_1:70572278-70572297 | Msa1034860:intron | 35.0% | |
| ! | TAACTAGATTTTGCCGAACA+AGG | - | chr7_1:70572324-70572343 | Msa1034860:intron | 35.0% |
| AAAAGCAAGTCAGTAGATAG+TGG | - | chr7_1:70572424-70572443 | Msa1034860:intron | 35.0% | |
| AAAGCAAGTCAGTAGATAGT+GGG | - | chr7_1:70572425-70572444 | Msa1034860:intron | 35.0% | |
| !! | GACCAAGTAAAAGCATTTGA+AGG | - | chr7_1:70572542-70572561 | Msa1034860:intron | 35.0% |
| ! | CTCCTTCAAATGCTTTTACT+TGG | + | chr7_1:70572547-70572566 | None:intergenic | 35.0% |
| AACAAAAGCCTACCAGAAAT+GGG | - | chr7_1:70572860-70572879 | Msa1034860:intron | 35.0% | |
| ! | TTCCTCTTTAAAGGACTTGT+GGG | + | chr7_1:70572912-70572931 | None:intergenic | 35.0% |
| TACTTTGCCTTCCTCTTTAA+AGG | + | chr7_1:70572921-70572940 | None:intergenic | 35.0% | |
| TCTCTAGTATCAAAGTATGG+TGG | - | chr7_1:70573106-70573125 | Msa1034860:intron | 35.0% | |
| TGCACAGAAAAAGTTGGAAA+AGG | - | chr7_1:70573168-70573187 | Msa1034860:CDS | 35.0% | |
| GCACAGAAAAAGTTGGAAAA+GGG | - | chr7_1:70573169-70573188 | Msa1034860:CDS | 35.0% | |
| !! | GTTGTTTTGTAATGAACCAC+AGG | - | chr7_1:70572013-70572032 | Msa1034860:exon | 35.0% |
| ! | TGAGCTGTACAAAAAGTACA+AGG | - | chr7_1:70572106-70572125 | Msa1034860:CDS | 35.0% |
| ! | GAGCTGTACAAAAAGTACAA+GGG | - | chr7_1:70572107-70572126 | Msa1034860:CDS | 35.0% |
| ! | AGCTGTACAAAAAGTACAAG+GGG | - | chr7_1:70572108-70572127 | Msa1034860:CDS | 35.0% |
| AGTACAAGGGGAATATGAAA+AGG | - | chr7_1:70572120-70572139 | Msa1034860:CDS | 35.0% | |
| CATCAAGAATGTCCTTGAAT+CGG | + | chr7_1:70572278-70572297 | None:intergenic | 35.0% | |
| ATTCAAGGACATTCTTGATG+AGG | - | chr7_1:70572278-70572297 | Msa1034860:intron | 35.0% | |
| ! | TAACTAGATTTTGCCGAACA+AGG | - | chr7_1:70572324-70572343 | Msa1034860:intron | 35.0% |
| AAAAGCAAGTCAGTAGATAG+TGG | - | chr7_1:70572424-70572443 | Msa1034860:intron | 35.0% | |
| AAAGCAAGTCAGTAGATAGT+GGG | - | chr7_1:70572425-70572444 | Msa1034860:intron | 35.0% | |
| !! | GACCAAGTAAAAGCATTTGA+AGG | - | chr7_1:70572542-70572561 | Msa1034860:intron | 35.0% |
| ! | CTCCTTCAAATGCTTTTACT+TGG | + | chr7_1:70572547-70572566 | None:intergenic | 35.0% |
| AACAAAAGCCTACCAGAAAT+GGG | - | chr7_1:70572860-70572879 | Msa1034860:intron | 35.0% | |
| ! | TTCCTCTTTAAAGGACTTGT+GGG | + | chr7_1:70572912-70572931 | None:intergenic | 35.0% |
| TACTTTGCCTTCCTCTTTAA+AGG | + | chr7_1:70572921-70572940 | None:intergenic | 35.0% | |
| TCTCTAGTATCAAAGTATGG+TGG | - | chr7_1:70573106-70573125 | Msa1034860:intron | 35.0% | |
| TGCACAGAAAAAGTTGGAAA+AGG | - | chr7_1:70573168-70573187 | Msa1034860:CDS | 35.0% | |
| GCACAGAAAAAGTTGGAAAA+GGG | - | chr7_1:70573169-70573188 | Msa1034860:CDS | 35.0% | |
| CTCTTCTGTTAATCAGGATC+TGG | - | chr7_1:70571877-70571896 | Msa1034860:three_prime_UTR | 40.0% | |
| TACCACAATGCATCAGGAAA+GGG | + | chr7_1:70571976-70571995 | None:intergenic | 40.0% | |
| ATACCACAATGCATCAGGAA+AGG | + | chr7_1:70571977-70571996 | None:intergenic | 40.0% | |
| CATGTATACCACAATGCATC+AGG | + | chr7_1:70571982-70572001 | None:intergenic | 40.0% | |
| ! | AGGAGTTTGAAGCAAACTAC+CGG | - | chr7_1:70572054-70572073 | Msa1034860:CDS | 40.0% |
| ATAGGTCTTAGTTTCTACGC+AGG | - | chr7_1:70572366-70572385 | Msa1034860:CDS | 40.0% | |
| CAACAAAAGCCTACCAGAAA+TGG | - | chr7_1:70572859-70572878 | Msa1034860:intron | 40.0% | |
| ATACTTCCTTAGCCCATTTC+TGG | + | chr7_1:70572875-70572894 | None:intergenic | 40.0% | |
| ! | CTTCCTCTTTAAAGGACTTG+TGG | + | chr7_1:70572913-70572932 | None:intergenic | 40.0% |
| ! | CACAAGTCCTTTAAAGAGGA+AGG | - | chr7_1:70572911-70572930 | Msa1034860:intron | 40.0% |
| !! | GGCAAAGTAAGTTGATCAAC+CGG | - | chr7_1:70572932-70572951 | Msa1034860:intron | 40.0% |
| !! | GCAAAGTAAGTTGATCAACC+GGG | - | chr7_1:70572933-70572952 | Msa1034860:intron | 40.0% |
| ACTGACCTTTCCTCTCATTT+CGG | + | chr7_1:70573069-70573088 | None:intergenic | 40.0% | |
| GCGTCTCTAGTATCAAAGTA+TGG | - | chr7_1:70573103-70573122 | Msa1034860:intron | 40.0% | |
| GCTTCAAATTCCTCTTCAGA+GGG | + | chr7_1:70573148-70573167 | None:intergenic | 40.0% | |
| AGCTTCAAATTCCTCTTCAG+AGG | + | chr7_1:70573149-70573168 | None:intergenic | 40.0% | |
| TGAAGCTGCACAGAAAAAGT+TGG | - | chr7_1:70573162-70573181 | Msa1034860:CDS | 40.0% | |
| TTGTGTGAAGTGTGAGAACA+TGG | - | chr7_1:70573264-70573283 | Msa1034860:intron | 40.0% | |
| TAATTTCTGCGGATCTACTC+TGG | - | chr7_1:70573333-70573352 | Msa1034860:five_prime_UTR | 40.0% | |
| TATGTGCAATGTAGTGTGAC+TGG | - | chr7_1:70573366-70573385 | Msa1034860:five_prime_UTR | 40.0% | |
| CTCTTCTGTTAATCAGGATC+TGG | - | chr7_1:70571877-70571896 | Msa1034860:three_prime_UTR | 40.0% | |
| TACCACAATGCATCAGGAAA+GGG | + | chr7_1:70571976-70571995 | None:intergenic | 40.0% | |
| ATACCACAATGCATCAGGAA+AGG | + | chr7_1:70571977-70571996 | None:intergenic | 40.0% | |
| CATGTATACCACAATGCATC+AGG | + | chr7_1:70571982-70572001 | None:intergenic | 40.0% | |
| ! | AGGAGTTTGAAGCAAACTAC+CGG | - | chr7_1:70572054-70572073 | Msa1034860:CDS | 40.0% |
| ATAGGTCTTAGTTTCTACGC+AGG | - | chr7_1:70572366-70572385 | Msa1034860:CDS | 40.0% | |
| CAACAAAAGCCTACCAGAAA+TGG | - | chr7_1:70572859-70572878 | Msa1034860:intron | 40.0% | |
| ATACTTCCTTAGCCCATTTC+TGG | + | chr7_1:70572875-70572894 | None:intergenic | 40.0% | |
| ! | CTTCCTCTTTAAAGGACTTG+TGG | + | chr7_1:70572913-70572932 | None:intergenic | 40.0% |
| ! | CACAAGTCCTTTAAAGAGGA+AGG | - | chr7_1:70572911-70572930 | Msa1034860:intron | 40.0% |
| !! | GGCAAAGTAAGTTGATCAAC+CGG | - | chr7_1:70572932-70572951 | Msa1034860:intron | 40.0% |
| !! | GCAAAGTAAGTTGATCAACC+GGG | - | chr7_1:70572933-70572952 | Msa1034860:intron | 40.0% |
| ACTGACCTTTCCTCTCATTT+CGG | + | chr7_1:70573069-70573088 | None:intergenic | 40.0% | |
| GCGTCTCTAGTATCAAAGTA+TGG | - | chr7_1:70573103-70573122 | Msa1034860:intron | 40.0% | |
| GCTTCAAATTCCTCTTCAGA+GGG | + | chr7_1:70573148-70573167 | None:intergenic | 40.0% | |
| AGCTTCAAATTCCTCTTCAG+AGG | + | chr7_1:70573149-70573168 | None:intergenic | 40.0% | |
| TGAAGCTGCACAGAAAAAGT+TGG | - | chr7_1:70573162-70573181 | Msa1034860:CDS | 40.0% | |
| TTGTGTGAAGTGTGAGAACA+TGG | - | chr7_1:70573264-70573283 | Msa1034860:intron | 40.0% | |
| TAATTTCTGCGGATCTACTC+TGG | - | chr7_1:70573333-70573352 | Msa1034860:five_prime_UTR | 40.0% | |
| TATGTGCAATGTAGTGTGAC+TGG | - | chr7_1:70573366-70573385 | Msa1034860:five_prime_UTR | 40.0% | |
| TCTGTTAATCAGGATCTGGC+AGG | - | chr7_1:70571881-70571900 | Msa1034860:three_prime_UTR | 45.0% | |
| ACCACAATGCATCAGGAAAG+GGG | + | chr7_1:70571975-70571994 | None:intergenic | 45.0% | |
| ATATCAGCTTCAGTGACCTG+TGG | + | chr7_1:70572032-70572051 | None:intergenic | 45.0% | |
| GGTCACTGAAGCTGATATTG+AGG | - | chr7_1:70572034-70572053 | Msa1034860:CDS | 45.0% | |
| ! | GGAGTTTGAAGCAAACTACC+GGG | - | chr7_1:70572055-70572074 | Msa1034860:CDS | 45.0% |
| ! | GAGTTTGAAGCAAACTACCG+GGG | - | chr7_1:70572056-70572075 | Msa1034860:CDS | 45.0% |
| ! | TTTTCTCTGAGTCAGAACCC+CGG | + | chr7_1:70572076-70572095 | None:intergenic | 45.0% |
| !! | ACTTGACTCACACCGATTCA+AGG | - | chr7_1:70572263-70572282 | Msa1034860:intron | 45.0% |
| !! | TTCCTTAGCCCATTTCTGGT+AGG | + | chr7_1:70572871-70572890 | None:intergenic | 45.0% |
| TAAAGGACTTGTGGGTGGTT+TGG | + | chr7_1:70572904-70572923 | None:intergenic | 45.0% | |
| ! | CTCTTTAAAGGACTTGTGGG+TGG | + | chr7_1:70572909-70572928 | None:intergenic | 45.0% |
| ! | CACCCACAAGTCCTTTAAAG+AGG | - | chr7_1:70572907-70572926 | Msa1034860:intron | 45.0% |
| TATCACAACGCCGAAATGAG+AGG | - | chr7_1:70573056-70573075 | Msa1034860:intron | 45.0% | |
| AATTCCTCTTCAGAGGGTTC+TGG | + | chr7_1:70573142-70573161 | None:intergenic | 45.0% | |
| TCTGTTAATCAGGATCTGGC+AGG | - | chr7_1:70571881-70571900 | Msa1034860:three_prime_UTR | 45.0% | |
| ACCACAATGCATCAGGAAAG+GGG | + | chr7_1:70571975-70571994 | None:intergenic | 45.0% | |
| ATATCAGCTTCAGTGACCTG+TGG | + | chr7_1:70572032-70572051 | None:intergenic | 45.0% | |
| GGTCACTGAAGCTGATATTG+AGG | - | chr7_1:70572034-70572053 | Msa1034860:CDS | 45.0% | |
| ! | GGAGTTTGAAGCAAACTACC+GGG | - | chr7_1:70572055-70572074 | Msa1034860:CDS | 45.0% |
| ! | GAGTTTGAAGCAAACTACCG+GGG | - | chr7_1:70572056-70572075 | Msa1034860:CDS | 45.0% |
| ! | TTTTCTCTGAGTCAGAACCC+CGG | + | chr7_1:70572076-70572095 | None:intergenic | 45.0% |
| !! | ACTTGACTCACACCGATTCA+AGG | - | chr7_1:70572263-70572282 | Msa1034860:intron | 45.0% |
| !! | TTCCTTAGCCCATTTCTGGT+AGG | + | chr7_1:70572871-70572890 | None:intergenic | 45.0% |
| TAAAGGACTTGTGGGTGGTT+TGG | + | chr7_1:70572904-70572923 | None:intergenic | 45.0% | |
| ! | CTCTTTAAAGGACTTGTGGG+TGG | + | chr7_1:70572909-70572928 | None:intergenic | 45.0% |
| ! | CACCCACAAGTCCTTTAAAG+AGG | - | chr7_1:70572907-70572926 | Msa1034860:intron | 45.0% |
| TATCACAACGCCGAAATGAG+AGG | - | chr7_1:70573056-70573075 | Msa1034860:intron | 45.0% | |
| AATTCCTCTTCAGAGGGTTC+TGG | + | chr7_1:70573142-70573161 | None:intergenic | 45.0% | |
| TCCCCTTTCCTGATGCATTG+TGG | - | chr7_1:70571971-70571990 | Msa1034860:three_prime_UTR | 50.0% | |
| CTTGATGAGGCTATAGCTGC+TGG | - | chr7_1:70572291-70572310 | Msa1034860:intron | 50.0% | |
| TGAGGCTATAGCTGCTGGTA+AGG | - | chr7_1:70572296-70572315 | Msa1034860:intron | 50.0% | |
| GAGGCTATAGCTGCTGGTAA+GGG | - | chr7_1:70572297-70572316 | Msa1034860:intron | 50.0% | |
| !! | AGCCTACCAGAAATGGGCTA+AGG | - | chr7_1:70572866-70572885 | Msa1034860:intron | 50.0% |
| CAACGCCGAAATGAGAGGAA+AGG | - | chr7_1:70573061-70573080 | Msa1034860:intron | 50.0% | |
| ! | TATGCCAGAACCCTCTGAAG+AGG | - | chr7_1:70573135-70573154 | Msa1034860:CDS | 50.0% |
| TCCCCTTTCCTGATGCATTG+TGG | - | chr7_1:70571971-70571990 | Msa1034860:three_prime_UTR | 50.0% | |
| CTTGATGAGGCTATAGCTGC+TGG | - | chr7_1:70572291-70572310 | Msa1034860:intron | 50.0% | |
| TGAGGCTATAGCTGCTGGTA+AGG | - | chr7_1:70572296-70572315 | Msa1034860:intron | 50.0% | |
| GAGGCTATAGCTGCTGGTAA+GGG | - | chr7_1:70572297-70572316 | Msa1034860:intron | 50.0% | |
| !! | AGCCTACCAGAAATGGGCTA+AGG | - | chr7_1:70572866-70572885 | Msa1034860:intron | 50.0% |
| CAACGCCGAAATGAGAGGAA+AGG | - | chr7_1:70573061-70573080 | Msa1034860:intron | 50.0% | |
| ! | TATGCCAGAACCCTCTGAAG+AGG | - | chr7_1:70573135-70573154 | Msa1034860:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 70571863 | 70573399 | 70571863 | ID=Msa1034860;Name=Msa1034860 |
| chr7_1 | mRNA | 70571863 | 70573399 | 70571863 | ID=Msa1034860-mRNA-1;Parent=Msa1034860;Name=Msa1034860-mRNA-1;_AED=0.06;_eAED=0.06;_QI=75|1|1|1|1|1|5|168|168 |
| chr7_1 | exon | 70571863 | 70572244 | 70571863 | ID=Msa1034860-mRNA-1:exon:16890;Parent=Msa1034860-mRNA-1 |
| chr7_1 | exon | 70572325 | 70572415 | 70572325 | ID=Msa1034860-mRNA-1:exon:16889;Parent=Msa1034860-mRNA-1 |
| chr7_1 | exon | 70572950 | 70573032 | 70572950 | ID=Msa1034860-mRNA-1:exon:16888;Parent=Msa1034860-mRNA-1 |
| chr7_1 | exon | 70573121 | 70573227 | 70573121 | ID=Msa1034860-mRNA-1:exon:16887;Parent=Msa1034860-mRNA-1 |
| chr7_1 | exon | 70573313 | 70573399 | 70573313 | ID=Msa1034860-mRNA-1:exon:16886;Parent=Msa1034860-mRNA-1 |
| chr7_1 | five_prime_UTR | 70573325 | 70573399 | 70573325 | ID=Msa1034860-mRNA-1:five_prime_utr;Parent=Msa1034860-mRNA-1 |
| chr7_1 | CDS | 70573313 | 70573324 | 70573313 | ID=Msa1034860-mRNA-1:cds;Parent=Msa1034860-mRNA-1 |
| chr7_1 | CDS | 70573121 | 70573227 | 70573121 | ID=Msa1034860-mRNA-1:cds;Parent=Msa1034860-mRNA-1 |
| chr7_1 | CDS | 70572950 | 70573032 | 70572950 | ID=Msa1034860-mRNA-1:cds;Parent=Msa1034860-mRNA-1 |
| chr7_1 | CDS | 70572325 | 70572415 | 70572325 | ID=Msa1034860-mRNA-1:cds;Parent=Msa1034860-mRNA-1 |
| chr7_1 | CDS | 70572031 | 70572244 | 70572031 | ID=Msa1034860-mRNA-1:cds;Parent=Msa1034860-mRNA-1 |
| chr7_1 | three_prime_UTR | 70571863 | 70572030 | 70571863 | ID=Msa1034860-mRNA-1:three_prime_utr;Parent=Msa1034860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
